HHsearch alignment for GI: 254780277 and conserved domain: PRK10829
>PRK10829 ribonuclease D; Provisional.
Probab=99.64 E-value=2.2e-15 Score=130.81 Aligned_cols=177 Identities=13% Similarity=0.052 Sum_probs=141.7
Q ss_pred CCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCH
Q ss_conf 50354799999999999986685232332224331100124420102577665443455023137443334565001788
Q gi|254780277|r 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446 (976)
Q Consensus 367 ~y~~I~~~~~L~~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~ 446 (976)
T Consensus 2 ~y~~I~t~~~L~~~~~~l~~~~~iavDTEf~r~~ty~p~l~LiQi~~~~~---------~~lIDpl~~------------ 60 (373)
T PRK10829 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEQ---------LALIDPLGI------------ 60 (373)
T ss_pred EEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEEEEECCC---------EEEEECCCC------------
T ss_conf 15997989999999999707991898577456777898458999851896---------799947877------------
Q ss_pred HHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99997444420222100110032123788986-18866642100234554316876677246677622444223356543
Q gi|254780277|r 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 (976)
Q Consensus 447 ~evl~~L~~lle~~~i~kIgHN~KfD~~~L~~-~GI~l~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k 525 (976)
T Consensus 61 -~dl~~l~~ll~~~~i~kv~Haa~qDle~l~~~~g~~p~~iFDTQiAa~~lg~~-~~~gy~~Lv~~~l~v~l~----K~~ 134 (373)
T PRK10829 61 -TDWSPFKALLRDPSITKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRP-LSWGFASMVEEYSGVALD----KSE 134 (373)
T ss_pred -CCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCC----CCC
T ss_conf -77699999970988416520642159999998198874077648899865786-555899999999396656----664
Q ss_pred CCCCCHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 222100000-012333322211111245677632221000134578
Q gi|254780277|r 526 SSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 (976)
Q Consensus 526 ~~~~~~~i~-~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~ 570 (976)
T Consensus 135 ~~sDW~~RPLs~~ql~YA~~DV~yL~~l~~~L~~~l~~~~r~~w~~ 180 (373)
T PRK10829 135 SRTDWLARPLSERQCEYAAADVWYLLPIAAKLMVETEAAGWLPAAL 180 (373)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 6275788999989999999999999999999999998357558999