HHsearch alignment for GI: 254780277 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=97.28  E-value=0.00033  Score=49.30  Aligned_cols=74  Identities=9%  Similarity=0.013  Sum_probs=33.4

Q ss_pred             EEEEEECC-CCCHHHHCCHH----HHCCC----CCCCHHHHHHHHHHHHHHHHCCCC---EEEECCEEHHHHHHHHHHHH
Q ss_conf             99997274-88713240865----21667----987975886489999999970997---99568901665899999999
Q gi|254780277|r   61 FAVIFDYP-AVTFRNEIYPD----YKANR----PKIPEMLLPQLPLVRLATQAFGIP---AIEIQGFEADDIIATYTYIA  128 (976)
Q Consensus        61 ~~v~fD~~-~~tfR~~~~~~----YKa~R----~~~p~~l~~q~~~i~~~l~~~gi~---~~~~~~~EADDviatla~~~  128 (976)
T Consensus        32 tiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l---~i~~~~i~~ltG---~~~~~~r~~~w  105 (764)
T PRK13766         32 TLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFL---NIDPEKIVVLTG---EISPEKRAALW  105 (764)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHC---CCCCCEEEEEEC---CCCHHHHHHHH
T ss_conf             899959986689999999999997489889998588889999999999970---999552899988---87827689986


Q ss_pred             HHCCCCEEEECCCC
Q ss_conf             84899499986870
Q gi|254780277|r  129 EKEGFAVTIISTDK  142 (976)
Q Consensus       129 ~~~~~~v~i~s~Dk  142 (976)
T Consensus       106 --~~~~Viv~TPQv  117 (764)
T PRK13766        106 --EKAKVIVATPQV  117 (764)
T ss_pred             --CCCCEEEECCHH
T ss_conf             --079999999089