HHsearch alignment for GI: 254780277 and conserved domain: PTZ00166
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional.
Probab=97.61 E-value=0.00054 Score=47.73 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=99.8
Q ss_pred HHCCCCCCCCCCCCCC------CCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCC-CCCCCC-CCHHHHHHHHHHH
Q ss_conf 8668523233222433------1100124420102577665443455023137443334-565001-7889999744442
Q gi|254780277|r 385 ETIGSASFKIITDTMD------AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ-DSTGKN-TLTKEILSYLKKF 456 (976)
Q Consensus 385 ~~~~~ia~DtETt~ld------~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~-d~~~~~-~~~~evl~~L~~l 456 (976)
T Consensus 288 aPlrilSfDIEC~~~~G~gFP~~~~DpVIqIs~~~~~~g~~~~~~~-~~~ftl~~C~~I~g~~V~~F~tE~eLL~aF~~f 366 (1081)
T PTZ00166 288 PPIRILSFDIECIKLDGKGFPEANNDPVIQISSVLHTHGDPLDSCK-NFIFTLKECASLAGANVLWFDNEKTLLLAWNDF 366 (1081)
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCC-CEEEECCCCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 8816999867845888998989999957998579881478887646-446674787788997799709999999999999
Q ss_pred H--CCCCCHHHHCCC-CHHHHHHHH----CCCC----------------------------------CCC--CCCHHHHH
Q ss_conf 0--222100110032-123788986----1886----------------------------------664--21002345
Q gi|254780277|r 457 F--ENEHFLKIGHNI-KYDKLVLHR----YGIS----------------------------------MRG--FEDIMLMS 493 (976)
Q Consensus 457 l--e~~~i~kIgHN~-KfD~~~L~~----~GI~----------------------------------l~~--i~DTmlaa 493 (976)
T Consensus 367 i~~~DPDII-TGYNI~nFDlpYLl~Ra~~L~i~~f~~lgRlk~~~~~~~~~~~~s~a~G~~~~k~i~i~GRv~~Dl~~~v 445 (1081)
T PTZ00166 367 IIAVDPDFL-TGYNIINFDLPYLLNRATALNLKKFKFLTRIKSVKSTVKDSIFSSNQFGTHENKEINIEGRILFDVYDLI 445 (1081)
T ss_pred HHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCEEEEEHHHHH
T ss_conf 987099899-9668788888999999999588643323611577652202656655556665506867578996469999
Q ss_pred HHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC-CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5431687667724667762244422335654322-210000001233332221111124567763222100013457886
Q gi|254780277|r 494 YVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 (976)
Q Consensus 494 yLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~-~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~i 572 (976)
T Consensus 446 ~-r~~kL~SYkLntVs~~fLgeqKeDV~~~~I~~l~~~~~e~r~rla~YClkDa~L~lrL~~KL~~l~n~~EMArV---t 521 (1081)
T PTZ00166 446 R-RDYKLKSYSLNYVSFEFLKEQKEDVHYSTINKLQNGNPEDRKRIASYCLKDSILPLRLIDKLLLLYNYIEMARV---T 521 (1081)
T ss_pred H-HHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_conf 8-75587857688899998188753379999999981493788999999899899999999999899999999999---7
Q ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 07501233221014310058999986
Q gi|254780277|r 573 DKPMIDVVSQMEITGIQIDQDLLKQV 598 (976)
Q Consensus 573 E~Pl~~vLa~ME~~Gi~vD~~~L~~l 598 (976)
T Consensus 522 gVPl~~ll~r--GQQIRV~S~LLr~a 545 (1081)
T PTZ00166 522 GTPIKYLLTR--GQQIKVTSQIYRKC 545 (1081)
T ss_pred CCCHHHHHCC--CCHHHHHHHHHHHH
T ss_conf 8879998106--52374899999998