HHsearch alignment for GI: 254780277 and conserved domain: TIGR00575
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=92.27 E-value=0.086 Score=31.65 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=33.1
Q ss_pred EHHHHHHHHHCC-----CCHHHHH--HHHHHCCCH-HHCCH---HHHHH--HHHHHH-HHHHCCCHHHHHH
Q ss_conf 037778734069-----8889999--989809996-88998---88863--025135-6440777035678
Q gi|254780277|r 763 KITPLYQVFENS-----LDIHRMV--AAEIFGVNI-EKVSP---QMRRH--AKTINF-SIIYGISPFRLAT 819 (976)
Q Consensus 763 ~D~~l~~af~~g-----~DiH~~t--A~~vf~~~~-~~vt~---~~R~~--aK~inf-gi~YG~~~~~La~ 819 (976)
T Consensus 461 G~~~I~~LfE~~Lv~~~~DLY~L~~k~~~Ll~le~~~g~~sa~nLl~aIe~sK~~pl~RlL~aLGIr~VG~ 531 (706)
T TIGR00575 461 GEKVIEQLFEEKLVRSVADLYALKEKLEDLLELEGKFGEKSAQNLLSAIEKSKKKPLARLLFALGIRHVGE 531 (706)
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 38999999872666785666577889999870640355688999999999852104899998628603579