>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit; InterPro: IPR006309 These represent DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease region as described in IPR006055 from INTERPRO. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are not included in this set of sequences, as they are smaller proteins.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.

Probab=98.75 E-value=3.1e-08 Score=78.68 Aligned_cols=144 Identities=17% Similarity=0.250 Sum_probs=90.5 Q ss_pred CCCCCCCCCCCCCCC-----C-CCCCCE---EECCCCCCCCCCCCCCEECCCCCCCCCC-----------CCCCCCC-HH Q ss_conf 523233222433110-----0-124420---1025776654434550231374433345-----------6500178-89 Q gi|254780277|r 389 SASFKIITDTMDAFH-----S-KPIAIA---ISTLDQKDDTSFKVETIFIDLSVHTSQD-----------STGKNTL-TK 447 (976) Q Consensus 389 ~ia~DtETt~ld~~~-----~-~ivGis---ls~~~~~~~~~~~~~~~yip~~~~~~~d-----------~~~~~~~-~~ 447 (976) T Consensus 2 ~IiLDTETTGl~~~~G~~~~GhRivEIGavE~vnr~----~tG~~fH~Y~~P~Rd~p~eA~kVHGiT~efL~dKnaP~Fk 77 (246) T TIGR01406 2 EIILDTETTGLDPKGGLPYIGHRIVEIGAVELVNRM----LTGKNFHVYVKPERDIPAEAAKVHGITDEFLKDKNAPKFK 77 (246) T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEECCC----CCCCCEEEEECCCCCCHHHCEECCCCCHHHHCCCCCCCHH T ss_conf 267115556877667768568626888218567350----3887312433688877300210137646884688989525 Q ss_pred HHHHHHHHHHCCCCCHHHHCCCCHHHHHH----HHCC---CC-CC---CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCC Q ss_conf 99974444202221001100321237889----8618---86-66---42100234554316876677246677622444 Q gi|254780277|r 448 EILSYLKKFFENEHFLKIGHNIKYDKLVL----HRYG---IS-MR---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516 (976) Q Consensus 448 evl~~L~~lle~~~i~kIgHN~KfD~~~L----~~~G---I~-l~---~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~ 516 (976) T Consensus 78 ~Ia~~Fl~Fi~~~~L--vIHNA~FD~gFlN~EL~~Lg~~~~~~~~~~~~~~DTL~mAR~~FPG~-~~sLDALCkRf~-vD 153 (246) T TIGR01406 78 EIADEFLDFIKGSEL--VIHNAAFDVGFLNYELERLGLKEIKKISDFCRVIDTLAMARERFPGK-RNSLDALCKRFK-VD 153 (246) T ss_pred HHHHHHHHHHCCCEE--EEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHC-CC T ss_conf 789999998459889--99757021678999998728732100013667865689997237898-664678774304-25 Q ss_pred CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 22335654322210000001233332221111124567763 Q gi|254780277|r 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 (976) Q Consensus 517 ~~e~~~~~k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~ 557 (976) T Consensus 154 -----ns------------~R~LHGAL~DA~LLAeVYl~lt 177 (246) T TIGR01406 154 -----NS------------HRQLHGALLDAELLAEVYLALT 177 (246) T ss_pred -----CC------------CCHHHHHHHHHHHHHHHHHHHC T ss_conf -----00------------0213478999999999999862

HHsearch alignment for GI: 254780277 and conserved domain: TIGR01406