HHsearch alignment for GI: 254780277 and conserved domain: TIGR03491
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=90.87 E-value=0.76 Score=24.76 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=76.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCHHHH
Q ss_conf 852323322243311001244201025776654434550231374433345650017889999744442022-2100110
Q gi|254780277|r 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIG 466 (976)
Q Consensus 388 ~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~lle~-~~i~kIg 466 (976)
T Consensus 285 gdlffDiEg~P-d~~leYL~G~~~~~~~~~-------~~~f~~f~A~~~~~-------E~~~~~~f~~~l~~~p~-~~Iy 348 (457)
T TIGR03491 285 GELIFDIESDP-DENLDYLHGFLVVDKGQE-------NEKYRPFLAEDPNT-------EELAWQQFLQLLQSYPD-APIY 348 (457)
T ss_pred CCEEEEECCCC-CCCCCEEEEEEEECCCCC-------CCEEEEHHCCCCHH-------HHHHHHHHHHHHHHCCC-CEEE
T ss_conf 63798505689-988776899997248887-------75054200489357-------89999999999986899-6599
Q ss_pred CCCCHHHHHHHH----CCCCCC-------CCCCHHH--HHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC---
Q ss_conf 032123788986----188666-------4210023--455431687667724667762244422335654322210---
Q gi|254780277|r 467 HNIKYDKLVLHR----YGISMR-------GFEDIML--MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI--- 530 (976)
Q Consensus 467 HN~KfD~~~L~~----~GI~l~-------~i~DTml--aayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~--- 530 (976)
T Consensus 349 HY~~yE~~al~rLa~~~~~~e~evd~ll~r~VDL~~vvr~~~~~p-~~sysLK~ve~-~~gf~w~~~~~~g~~si~~y~~ 426 (457)
T TIGR03491 349 HYGETEKDSLRRLAKRYGTPEAEIEELLKRFVDIHTIVRRSWILP-IESYSLKSIAR-WLGFEWRQKEASGAKSLLWYRQ 426 (457)
T ss_pred EECHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEHHHHHHCEEECC-CCCCCHHHHHH-HCCCCCCCCCCCHHHHHHHHHH
T ss_conf 845487999999998719986999999987610699760158837-99875999998-7197445799887999999999
Q ss_pred -----HHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----00000123333222111112456776
Q gi|254780277|r 531 -----DKISDSQVQEHAIENSNVILQLWLLL 556 (976)
Q Consensus 531 -----~~i~~e~~~~Yaa~Da~~t~~L~~~l 556 (976)
T Consensus 427 w~~t~d~~~l~~I~~YN~dDC~aT~~l~~WL 457 (457)
T TIGR03491 427 WKKTGDRRLLERILRYNEDDCRATWIVADWL 457 (457)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9975889999999998489999999999659