HHsearch alignment for GI: 254780277 and conserved domain: cd00007
>cd00007 35EXOc 3'-5' exonuclease. The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).
Probab=99.89 E-value=1.5e-23 Score=190.45 Aligned_cols=151 Identities=28% Similarity=0.465 Sum_probs=127.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHC
Q ss_conf 85232332224331100124420102577665443455023137443334565001788999974444202221001100
Q gi|254780277|r 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 (976)
Q Consensus 388 ~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~lle~~~i~kIgH 467 (976)
T Consensus 1 ~~ia~D~Et~~l~~~~~~i~~iql~~~~~---------~~yi~~~~~~-----------~~~~~~l~~~l~~~~i~Kv~h 60 (155)
T cd00007 1 KEVAFDTETTGLNYHRGKLVGIQIATAGE---------AAYIPDELEL-----------EEDLEALKELLEDEDITKVGH 60 (155)
T ss_pred CEEEEECCCCCCCCCCCCEEEEEEEECCC---------EEEEEECCCC-----------HHHHHHHHHHHHCCCCCEEEE
T ss_conf 98999898799977888099999998993---------5999814755-----------246999999982999738987
Q ss_pred CCCHHHHHHHHCCCCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHHCCHHHHHHHH
Q ss_conf 321237889861886664-2100234554316876677246677622444223---356543222100000012333322
Q gi|254780277|r 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAI 543 (976)
Q Consensus 468 N~KfD~~~L~~~GI~l~~-i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e---~~~~~k~~~~~~~i~~e~~~~Yaa 543 (976)
T Consensus 61 n~k~D~~~L~~~~~~~~~~~~Dt~iaa~ll~~~~~~~~L~~l~~~~l~~~~~k~~~~~~~~--~~~~~~~l~~~~~~YAa 138 (155)
T cd00007 61 DAKFDLVVLARDGIELPGNIFDTMLAAYLLNPGEGSHSLDDLAKEYLGIELDKDEQIYGKG--AKTFARPLSEELLEYAA 138 (155)
T ss_pred CCCHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCC--CCCCCCCCHHHHHHHHH
T ss_conf 3400099998628601350114999999847785523699999998398767488861776--54444799899999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 21111124567763222
Q gi|254780277|r 544 ENSNVILQLWLLLRPKL 560 (976)
Q Consensus 544 ~Da~~t~~L~~~l~~~L 560 (976)
T Consensus 139 ~D~~~~~~l~~~l~~~l 155 (155)
T cd00007 139 EDADALLRLYEKLLEEL 155 (155)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999659