HHsearch alignment for GI: 254780277 and conserved domain: cd05785
>cd05785 DNA_polB_like2_exo A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=97.59 E-value=0.00017 Score=51.36 Aligned_cols=149 Identities=15% Similarity=0.269 Sum_probs=81.2
Q ss_pred HHCCCCCCCCCCCCCCCC--------CCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 866852323322243311--------001244201025776654434550231374433345650017889999744442
Q gi|254780277|r 385 ETIGSASFKIITDTMDAF--------HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456 (976)
Q Consensus 385 ~~~~~ia~DtETt~ld~~--------~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~l 456 (976)
T Consensus 7 ~~lr~lsfDIE~~~~~g~~~p~p~~~~d~Ii~I~~~~~~~~~~--------v~~~----------~~~~E~~lL~~F~~~ 68 (207)
T cd05785 7 DDLRRLQLDIETYSLPGFFFSNPDRGDDRIIIVALRDNRGWEE--------VLHA----------EDAAEKELLEELVAI 68 (207)
T ss_pred HHEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCEE--------EEEE----------CCCCHHHHHHHHHHH
T ss_conf 0405999999747889977999888999789999885899779--------8762----------699999999999999
Q ss_pred HC--CCCCHHHHCCC-CHHHHHHHH----CCCCCC------------------------------C--CCCHHHHHHHH-
Q ss_conf 02--22100110032-123788986----188666------------------------------4--21002345543-
Q gi|254780277|r 457 FE--NEHFLKIGHNI-KYDKLVLHR----YGISMR------------------------------G--FEDIMLMSYVL- 496 (976)
Q Consensus 457 le--~~~i~kIgHN~-KfD~~~L~~----~GI~l~------------------------------~--i~DTmlaayLL- 496 (976)
T Consensus 69 i~~~dPDII-tGyNi~~FD~pYL~~Ra~~~~i~~~lgR~~~~~~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k~~~ 147 (207)
T cd05785 69 IRERDPDVI-EGHNIFRFDLPYLRRRCRRHGVPLAIGRDGSIPRQRPSRFRFAERLIDYPRYDIPGRHVIDTYFLVQLFD 147 (207)
T ss_pred HHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEECCCCCCEEEEEECCEEEEEHHHHHHHHC
T ss_conf 987399999-8679877588999999999599722257898744640302122355530499873648865499998642
Q ss_pred --CCCCCCCCHHHHHHHHCCCCCCCCCCC-CCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf --168766772466776224442233565-432221000000123333222111112456
Q gi|254780277|r 497 --DSGRSSHDIASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLW 553 (976)
Q Consensus 497 --dp~~~~~~L~~la~~yL~~~~~e~~~~-~k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~ 553 (976)
T Consensus 148 ~~~~~L~SY~L~~Va~~-~~l~~~~k~~~~~~~i~~~~~~d~~~l~~Yni~Dv~~t~~La 206 (207)
T cd05785 148 VSSRDLPSYGLKAVAKH-FGLASPDRTYIDGRQIAEVWRSDPARLLAYALDDVRETEGLA 206 (207)
T ss_pred CCCCCCCCCCHHHHHHH-HHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 11146776528999998-731366656388999999995298999998299999999860