HHsearch alignment for GI: 254780277 and conserved domain: cd06147
>cd06147 Rrp6p_like_exo Yeast Rrp6p and its human homolog, the Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome.
Probab=99.78 E-value=1.5e-18 Score=153.89 Aligned_cols=172 Identities=17% Similarity=0.251 Sum_probs=138.7
Q ss_pred CCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 65035479999999999998668523233222433110012442010257766544345502313744333456500178
Q gi|254780277|r 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445 (976)
Q Consensus 366 ~~y~~I~~~~~L~~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~ 445 (976)
T Consensus 3 ~p~~~Idt~~~L~~~~~~L~~~~~ialDtE~~~~~~~~~~l~LiQiat~~~---------~yliD~l~------------ 61 (192)
T cd06147 3 TPLTFVDTEEKLEELVEKLKNCKEIAVDLEHHSYRSYLGFTCLMQISTREE---------DYIVDTLK------------ 61 (192)
T ss_pred CCEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEECCCC---------CEEEEECC------------
T ss_conf 873998899999999999826996999797378856998279999950998---------87987434------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 899997444420222100110032123788986-1886664210023455431687667724667762244422335654
Q gi|254780277|r 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 (976)
Q Consensus 446 ~~evl~~L~~lle~~~i~kIgHN~KfD~~~L~~-~GI~l~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~ 524 (976)
T Consensus 62 l~~~~~~L~~ll~~~~I~KV~H~~~~Dl~~L~~~~gi~~~n~fDT~iaa~~l~~~--~~sL~~Lv~~~lg~~l~K---~~ 136 (192)
T cd06147 62 LRDDMHILNEVFTDPNILKVFHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLP--RHSLAYLLQKYCNVDADK---KY 136 (192)
T ss_pred CCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHCCCCCC---CC
T ss_conf 3003799999975988379985578779999998589876604289999984888--111999999993958873---23
Q ss_pred CCCCCCHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3222100000-012333322211111245677632221000
Q gi|254780277|r 525 KSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 (976)
Q Consensus 525 k~~~~~~~i~-~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~ 564 (976)
T Consensus 137 -q~SdW~~RPLs~~Ql~YAA~Dv~~Ll~ly~~L~~~L~e~~ 176 (192)
T cd06147 137 -QLADWRIRPLPEEMIKYAREDTHYLLYIYDRLRNELLERA 176 (192)
T ss_pred -EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -1143799989999999999999999999999999999842