HHsearch alignment for GI: 254780277 and conserved domain: cd06148
>cd06148 Egl_like_exo The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs.
Probab=99.60 E-value=4.7e-15 Score=128.41 Aligned_cols=175 Identities=16% Similarity=0.169 Sum_probs=127.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999986685232332224331100124420102577665443455023137443334565001788999974444202
Q gi|254780277|r 379 QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458 (976)
Q Consensus 379 ~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~lle 458 (976)
T Consensus 2 ~ai~~L~~~~vi~iD~E~~~~~~~-g~l~LiQiat~~~~--------vyl~D~~~~~----------~~~~~~~Lk~iLe 62 (197)
T cd06148 2 EAIIHLKKQKVIGLDCEGVNLGRK-GKLCLVQIATRTGQ--------IYLFDILKLG----------SIVFINGLKDILE 62 (197)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCC-CCEEEEEEEECCCC--------EEEEECCCCC----------CHHHHHHHHHHHC
T ss_conf 589998759999998886788989-98879999648998--------8999616676----------3445689999956
Q ss_pred CCCCHHHHCCCCHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCC-------CCCCHHHHHHHHCCCCCCCCCCCC----CC
Q ss_conf 22100110032123788986-1886664210023455431687-------667724667762244422335654----32
Q gi|254780277|r 459 NEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGR-------SSHDIASIAQKWLSYTRKEILKSR----KS 526 (976)
Q Consensus 459 ~~~i~kIgHN~KfD~~~L~~-~GI~l~~i~DTmlaayLLdp~~-------~~~~L~~la~~yL~~~~~e~~~~~----k~ 526 (976)
T Consensus 63 ~~~I~KV~H~~r~D~~~L~~~~gi~~~nvfDTqiA~~ll~~~~~~~~~~~~~~sl~~l~~~~l~~~~~~~~~~~~~~~~~ 142 (197)
T cd06148 63 SKKILKVIHDCRRDSDALYHQYGIKLNNVFDTQVADALLQEQETGGFNPDRVISLVQLLDKYLYISISLKEDVKKLMRED 142 (197)
T ss_pred CCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 99823999610999999999709970670319999999753131476775641599999999576401778778887506
Q ss_pred CCCCHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100000-01233332221111124567763222100013457886
Q gi|254780277|r 527 SIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 (976)
Q Consensus 527 ~~~~~~i~-~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~i 572 (976)
T Consensus 143 ~s~W~~RPLt~~ql~YAa~DV~yL~~L~~~L~~~Li~~~~~~~~~~~ 189 (197)
T cd06148 143 PKFWALRPLTEDMIRYAALDVLCLLPLYYAMLDALISKFLKAVFKYL 189 (197)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55446799999999999998999999999999999999999999998