HHsearch alignment for GI: 254780277 and conserved domain: pfam01367

>pfam01367 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold.
Probab=99.97  E-value=1.2e-30  Score=242.10  Aligned_cols=100  Identities=52%  Similarity=0.777  Sum_probs=96.4

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf             98878777787518743589987763602499898413678999864542001122322003578999765543203564
Q gi|254780277|r  174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV  253 (976)
Q Consensus       174 v~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~gsle~i~~~~d~i~~~k~~~~l~~~~e~a~ls~~L~tL~~Dv  253 (976)
T Consensus         1 v~P~q~~d~~aL~GD~sDnIPGv~GiG~KtA~~Ll~~~gsle~i~~n~d~i~~-k~~~~l~~~~~~~~lsr~L~tL~~dv   79 (100)
T pfam01367         1 LTPEQIIDYKALVGDSSDNIPGVPGIGEKTAAKLLKEYGSLENIYENLDKLKG-KLREKLLNGKEDAFLSRKLATIKTDV   79 (100)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             98899999999929764588999998816899999981989999981987179-99999997899999999871511489


Q ss_pred             CCCCCHHHHCCCCCCHHHHHH
Q ss_conf             224763552126767688998
Q gi|254780277|r  254 PITIPLEHLILEDCNGPRLIS  274 (976)
Q Consensus       254 pl~~~~~~l~~~~~d~~~l~~  274 (976)
T Consensus        80 ~l~~~~~~l~~~~~d~~~L~e  100 (100)
T pfam01367        80 PLELTLEDLRLKPPDKEELIE  100 (100)
T ss_pred             CCCCCHHHCCCCCCCHHHHCC
T ss_conf             899999990478999888549