HHsearch alignment for GI: 254780277 and conserved domain: pfam01367
>pfam01367 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold.
Probab=99.97 E-value=1.2e-30 Score=242.10 Aligned_cols=100 Identities=52% Similarity=0.777 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 98878777787518743589987763602499898413678999864542001122322003578999765543203564
Q gi|254780277|r 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDV 253 (976)
Q Consensus 174 v~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~gsle~i~~~~d~i~~~k~~~~l~~~~e~a~ls~~L~tL~~Dv 253 (976)
T Consensus 1 v~P~q~~d~~aL~GD~sDnIPGv~GiG~KtA~~Ll~~~gsle~i~~n~d~i~~-k~~~~l~~~~~~~~lsr~L~tL~~dv 79 (100)
T pfam01367 1 LTPEQIIDYKALVGDSSDNIPGVPGIGEKTAAKLLKEYGSLENIYENLDKLKG-KLREKLLNGKEDAFLSRKLATIKTDV 79 (100)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98899999999929764588999998816899999981989999981987179-99999997899999999871511489
Q ss_pred CCCCCHHHHCCCCCCHHHHHH
Q ss_conf 224763552126767688998
Q gi|254780277|r 254 PITIPLEHLILEDCNGPRLIS 274 (976)
Q Consensus 254 pl~~~~~~l~~~~~d~~~l~~ 274 (976)
T Consensus 80 ~l~~~~~~l~~~~~d~~~L~e 100 (100)
T pfam01367 80 PLELTLEDLRLKPPDKEELIE 100 (100)
T ss_pred CCCCCHHHCCCCCCCHHHHCC
T ss_conf 899999990478999888549