HHsearch alignment for GI: 254780277 and conserved domain: pfam09281

>pfam09281 Taq-exonuc Taq polymerase, exonuclease. Members of this family are found in prokaryotic Taq DNA polymerase, where they assume a ribonuclease H-like motif. The domain confers 5'-3' exonuclease activity to the polymerase.

Probab=95.66  E-value=0.015  Score=37.24  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             CHHHHHH-HHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHH
Q ss_conf             1237889-861886664210023455431687667724667762244422335654322210000001233332221111
Q gi|254780277|r  470 KYDKLVL-HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV  548 (976)
Q Consensus       470 KfD~~~L-~~~GI~l~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~i~~e~~~~Yaa~Da~~  548 (976)
T Consensus        70 AKdLAvla~~eG~~v~PGDDPmLlAYLlDPsNT--~p~~varRY~ggeW~e---------------------Da~~RA~~  126 (138)
T pfam09281        70 AKALAAHLSVRGTVVEPGDDPLLVAYLLDPANT--NMPGVARRYLGGEWPE---------------------DAATRAAI  126 (138)
T ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCC--CCHHHHHHHCCCCCCC---------------------CHHHHHHH
T ss_conf             999999987026656999860278765085678--8215667623888875---------------------67888999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             124567763222
Q gi|254780277|r  549 ILQLWLLLRPKL  560 (976)
Q Consensus       549 t~~L~~~l~~~L  560 (976)
T Consensus       127 t~rL~~~L~~rl  138 (138)
T pfam09281       127 TERLLRNLPPRL  138 (138)
T ss_pred             HHHHHHHCCCCC
T ss_conf             999998510019