HHsearch alignment for GI: 254780277 and conserved domain: smart00279

>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.

Probab=99.31  E-value=1.1e-12  Score=111.20  Aligned_cols=36  Identities=53%  Similarity=0.854  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             878777787518743589987763602499898413
Q gi|254780277|r  176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY  211 (976)
Q Consensus       176 p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~  211 (976)
T Consensus         1 p~q~~d~~~L~GD~sDnipGV~GIG~ktA~~ll~~~   36 (36)
T smart00279        1 PEQLIDYAILVGDYSDNIPGVKGIGPKTALKLLREF   36 (36)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             907889999818764688999974789999999859