HHsearch alignment for GI: 254780277 and conserved domain: smart00479
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases.
Probab=98.67 E-value=4.6e-08 Score=77.43 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=99.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEC-CC---C------CCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 52323322243311001244201025776654434550231-37---4------43334565001788999974444202
Q gi|254780277|r 389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI-DL---S------VHTSQDSTGKNTLTKEILSYLKKFFE 458 (976)
Q Consensus 389 ~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yi-p~---~------~~~~~d~~~~~~~~~evl~~L~~lle 458 (976)
T Consensus 2 ~v~~D~ETTGl~~~~~~Iieigav~~~~~~~~--~~~~~~i~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l~ 79 (169)
T smart00479 2 LVVIDCETTGLDPGKDEIIEIAAVDVDGGRII--VVFDTYVKPDRPITDYATEIHGITPEMLDDAPTFEEVLEELLEFLK 79 (169)
T ss_pred EEEEEEECCCCCCCCCEEEEEEEEEEECCEEE--EEEEEEECCCCCCCHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHC
T ss_conf 99999852799999986999999999999887--8889887999999989986318472120458669999999998604
Q ss_pred CCCCHHHHCCCCHHHHHHHH----CCCCC--C-CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 22100110032123788986----18866--6-42100234554316876677246677622444223356543222100
Q gi|254780277|r 459 NEHFLKIGHNIKYDKLVLHR----YGISM--R-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531 (976)
Q Consensus 459 ~~~i~kIgHN~KfD~~~L~~----~GI~l--~-~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~ 531 (976)
T Consensus 80 ~~~-~v~~~~~~fD~~~L~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~-~~~L~~l~~~~~i-~~-------------- 142 (169)
T smart00479 80 GKI-LVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGR-KYSLKKLAERLGL-EV-------------- 142 (169)
T ss_pred CCC-CHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-CHHHHHHHHHCCC-CC--------------
T ss_conf 874-510367999999999999981899886652462999999975885-4589999998599-98--------------
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 000012333322211111245677632221
Q gi|254780277|r 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI 561 (976)
Q Consensus 532 ~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~ 561 (976)
T Consensus 143 ----~~~~H~Al~Da~~t~~v~~~l~~~~~ 168 (169)
T smart00479 143 ----IGRAHRALDDARATAKLFKKLVERLL 168 (169)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf ----99992979999999999999997724