HHsearch alignment for GI: 254780277 and conserved domain: smart00482

>smart00482 POLAc DNA polymerase A domain.
Probab=100.00  E-value=0  Score=440.99  Aligned_cols=206  Identities=54%  Similarity=0.855  Sum_probs=202.3

Q ss_pred             CCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf             22243024248994899963265443687665103777873406988899999898099968899888863025135644
Q gi|254780277|r  730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII  809 (976)
Q Consensus       730 g~~iR~~F~a~~g~~lv~aDySQiElRilA~ls~D~~l~~af~~g~DiH~~tA~~vf~~~~~~vt~~~R~~aK~infgi~  809 (976)
T Consensus         1 g~~~R~~f~a~~G~~lv~aD~sqiE~Rv~A~la~D~~l~~~~~~g~D~h~~~A~~~f~~~~~~~~~~~R~~aK~~~~g~~   80 (206)
T smart00482        1 GREIRRAFVAPPGYVLVSADYSQIELRILAHLSGDENLLEAFNNGGDIHSKTAAQVFGVPEEEVTKELRRAAKAINFGII   80 (206)
T ss_pred             CCHHHCEEECCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCHHHHHHHCHHHHHHH
T ss_conf             90432267679999999988668999999998298779998743898689999996498801157566988567888665


Q ss_pred             HCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEECCCCCEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             07770356788199989999999999998888999999999999984988827787601898758837888778787701
Q gi|254780277|r  810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN  889 (976)
Q Consensus       810 YG~~~~~La~~l~is~~eA~~~i~~yf~~~p~v~~~~~~~~~~a~~~gyv~T~~GRrr~~p~i~s~~~~~r~~aeR~a~N  889 (976)
T Consensus        81 YG~G~~~la~~~g~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~~~~~g~v~t~~Gr~~~~~~~~~~~~~~~~~~~~~~~N  160 (206)
T smart00482       81 YGMGAKGLAEQLGISEAEAKELIKAYFARFPGVKRYIKRTLEEARRKGYVTTLFGRRRYIPDIDSRNPVLRAAAERAAVN  160 (206)
T ss_pred             CCCCCCCHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf             18651102455188999999999999997835999999999999877966678887776787687565455357876607


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCHH
Q ss_conf             3456538999999999999999865998189997263899955987
Q gi|254780277|r  890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE  935 (976)
Q Consensus       890 ~~iQGsaAdi~k~am~~i~~~~~~~~~~~~~ilqVHDElv~ev~~~  935 (976)
T Consensus       161 ~~vQgtaadi~~~al~~~~~~~~~~~~~~~iv~~VHDeiv~evp~e  206 (206)
T smart00482      161 APIQGSAADILKLAMIKMDEALKEKGLRARLLLQVHDELVFEVPEE  206 (206)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCC
T ss_conf             1022899999999999999999853999779985360259961899