HHsearch alignment for GI: 254780277 and conserved domain: smart00482
>smart00482 POLAc DNA polymerase A domain.
Probab=100.00 E-value=0 Score=440.99 Aligned_cols=206 Identities=54% Similarity=0.855 Sum_probs=202.3
Q ss_pred CCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 22243024248994899963265443687665103777873406988899999898099968899888863025135644
Q gi|254780277|r 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 (976)
Q Consensus 730 g~~iR~~F~a~~g~~lv~aDySQiElRilA~ls~D~~l~~af~~g~DiH~~tA~~vf~~~~~~vt~~~R~~aK~infgi~ 809 (976)
T Consensus 1 g~~~R~~f~a~~G~~lv~aD~sqiE~Rv~A~la~D~~l~~~~~~g~D~h~~~A~~~f~~~~~~~~~~~R~~aK~~~~g~~ 80 (206)
T smart00482 1 GREIRRAFVAPPGYVLVSADYSQIELRILAHLSGDENLLEAFNNGGDIHSKTAAQVFGVPEEEVTKELRRAAKAINFGII 80 (206)
T ss_pred CCHHHCEEECCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCHHHHHHHCHHHHHHH
T ss_conf 90432267679999999988668999999998298779998743898689999996498801157566988567888665
Q ss_pred HCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEECCCCCEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 07770356788199989999999999998888999999999999984988827787601898758837888778787701
Q gi|254780277|r 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 (976)
Q Consensus 810 YG~~~~~La~~l~is~~eA~~~i~~yf~~~p~v~~~~~~~~~~a~~~gyv~T~~GRrr~~p~i~s~~~~~r~~aeR~a~N 889 (976)
T Consensus 81 YG~G~~~la~~~g~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~~~~~g~v~t~~Gr~~~~~~~~~~~~~~~~~~~~~~~N 160 (206)
T smart00482 81 YGMGAKGLAEQLGISEAEAKELIKAYFARFPGVKRYIKRTLEEARRKGYVTTLFGRRRYIPDIDSRNPVLRAAAERAAVN 160 (206)
T ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEECCCCCEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 18651102455188999999999999997835999999999999877966678887776787687565455357876607
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCHH
Q ss_conf 3456538999999999999999865998189997263899955987
Q gi|254780277|r 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 (976)
Q Consensus 890 ~~iQGsaAdi~k~am~~i~~~~~~~~~~~~~ilqVHDElv~ev~~~ 935 (976)
T Consensus 161 ~~vQgtaadi~~~al~~~~~~~~~~~~~~~iv~~VHDeiv~evp~e 206 (206)
T smart00482 161 APIQGSAADILKLAMIKMDEALKEKGLRARLLLQVHDELVFEVPEE 206 (206)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCC
T ss_conf 1022899999999999999999853999779985360259961899