HHsearch alignment for GI: 254780277 and conserved domain: smart00484
>smart00484 XPGI Xeroderma pigmentosum G I-region. domain in nucleases
Probab=91.17 E-value=0.77 Score=24.71 Aligned_cols=66 Identities=30% Similarity=0.376 Sum_probs=49.6
Q ss_pred HCCCCEEEECCEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHEECCCCEEEEECCCC------CEECHHHHHHHHCC
Q ss_conf 709979956890166589999999984899499986870121223797599966788------35389999888489
Q gi|254780277|r 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGI 174 (976)
Q Consensus 104 ~~gi~~~~~~~~EADDviatla~~~~~~~~~v~i~s~DkD~~Qlv~~~v~~~~~~~~------~~~~~~~v~~~~gv 174 (976)
T Consensus 2 l~Gipyi~Ap~-Eaea~ca~L~~~----g~vd~v~s~D~D~l~~G~~~~ir~~~~~~~~~~~~~~~~l~~il~~L~l 73 (73)
T smart00484 2 LMGIPYIVAPY-EAEAQCAYLAKS----GLVDAIITEDSDLLLFGAPRLYRNLFFSGKKKLEFRIIDLESVLKELGL 73 (73)
T ss_pred CCCCCEEECCC-CHHHHHHHHHHC----CCEEEEECCCHHHHHHCCCEEEEECCCCCCCCCCEEEEEHHHHHHHCCC
T ss_conf 46963697697-899999999988----9889997262664764976402312335884355499889999976489