RPSBLAST alignment for GI: 254780277 and conserved domain: TIGR00593
>gnl|CDD|161944 TIGR00593, pola, DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 887
Score = 823 bits (2129), Expect = 0.0
Identities = 382/977 (39%), Positives = 549/977 (56%), Gaps = 101/977 (10%)
Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
L L+DG S +RA++A PL + K G P NA+ GF ML KLL KE ++ AV
Sbjct: 1 LLLIDGHSLAFRAYFALKNKPLTNSK--GEPTNAVYGFTKMLLKLL----KEEKPTYVAV 54
Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
FD TFR+E Y +YKANR PE L+ Q+PL++ A GIP +E++G+EADD+IAT
Sbjct: 55 AFDSGTPTFRHEAYAEYKANRAPTPEELIEQIPLIKELLDALGIPILEVEGYEADDVIAT 114
Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKWGIPPEKMV 180
AEKEG+ V IIS DKDL+QLVS + +I E+V++K+G+ P+++V
Sbjct: 115 LAKQAEKEGYEVRIISGDKDLLQLVSDNVKVLIPKGKTSFTEITPEYVVEKYGVTPDQLV 174
Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
L+AL GDS DNIPG+ GIG KTAA LLQE+G+LENI N +IK K RE ++ + E A
Sbjct: 175 DLKALVGDSSDNIPGVKGIGEKTAAKLLQEFGSLENIYENLDQIKSAKMREKLIAHKEDA 234
Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
LS++L + TDVP+ + LE L L + + RL + L
Sbjct: 235 FLSKELATIVTDVPLEVDLEDLRLSEPDRERLYALL------------------------ 270
Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKT--SQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
E++ + + + S + D + + +E+T E L
Sbjct: 271 -----------------QELEFKSLLDRLENLESPVIDDHAPVLTEKTSCAKESEEAAPL 313
Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
+ + +G + + + K +A+A +T +Q
Sbjct: 314 A--------------------NPAEKAEVG----GFVLERLLDQLKKALALAFATENQSY 349
Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
+ E I L + D ++ NE KIGH+ K+ +L R
Sbjct: 350 VA-YASEADGIPLLTILTDDK-------------FARWLLNEQIKKIGHDAKFLMHLLKR 395
Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
GI + G D ML +Y+LD + S + ++A+++L K +
Sbjct: 396 EGIELGGVIFDTMLAAYLLDPAQVST-LDTLARRYLVEELILDEKIGGKLAKFAFPPLEE 454
Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
E+ + +L L +L KLL +Y ++ P+ V+++ME TGI++D D L++
Sbjct: 455 ATEYLARRAAATKRLAEELLKELDENKLLSLYREIELPLSKVLAEMEKTGIKVDADYLQE 514
Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
+S E + + LEE IY+L+GE+FN++SPKQLG++LF KL P G KTKTG + T A L
Sbjct: 515 LSQEFGEEIADLEEEIYELAGEEFNINSPKQLGEVLFEKLGLPVGKKTKTG-YSTDADVL 573
Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
E++ +PII ILE+RQL+K+KSTY D LP +N T R+HT ++ T TGRL+S
Sbjct: 574 EKLRE-KHPIIALILEYRQLTKLKSTYVDGLPELVNPDTGRIHTTFNQTGTATGRLSSSN 632
Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
PNLQNIPI+++ G+KIR+AF++ LISADYSQIELR+LAH+++ L + F+N DI
Sbjct: 633 PNLQNIPIRSEEGRKIRKAFVAEKGWLLISADYSQIELRVLAHLSQDENLIEAFQNGEDI 692
Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
H A+ +FGV IE V+P MRR AKTINF ++YG+S F LA +L I R EA ++I+RYF
Sbjct: 693 HTETASRLFGVEIEDVTPNMRRIAKTINFGVVYGMSAFGLAQELGISRKEAKEFIERYFA 752
Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
R+PG+ +YIE T R+ GYVET+FGRR + +INS ++R ER AINAPIQGSAA
Sbjct: 753 RYPGVKDYIENTVEEARKKGYVETLFGRRRYIPDINSRNRNVREAAERMAINAPIQGSAA 812
Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
DI + AMI + K L++ KL ++LLQ+HDEL+FE PEEE + ++ ME A
Sbjct: 813 DIMKIAMIKLDKRLKERKLKARLLLQVHDELIFEAPEEEAEEVAALVKEVMEHA----YP 868
Query: 958 LRVPLKVNIKVSNNWQE 974
L VPL+V + NW E
Sbjct: 869 LAVPLEVEVGTGKNWGE 885