RPSBLAST alignment for GI: 254780277 and conserved domain: TIGR00593

>gnl|CDD|161944 TIGR00593, pola, DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 887
 Score =  823 bits (2129), Expect = 0.0
 Identities = 382/977 (39%), Positives = 549/977 (56%), Gaps = 101/977 (10%)

Query: 7   LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63
           L L+DG S  +RA++A    PL + K  G P NA+ GF  ML KLL    KE   ++ AV
Sbjct: 1   LLLIDGHSLAFRAYFALKNKPLTNSK--GEPTNAVYGFTKMLLKLL----KEEKPTYVAV 54

Query: 64  IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123
            FD    TFR+E Y +YKANR   PE L+ Q+PL++    A GIP +E++G+EADD+IAT
Sbjct: 55  AFDSGTPTFRHEAYAEYKANRAPTPEELIEQIPLIKELLDALGIPILEVEGYEADDVIAT 114

Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKWGIPPEKMV 180
               AEKEG+ V IIS DKDL+QLVS    +          +I  E+V++K+G+ P+++V
Sbjct: 115 LAKQAEKEGYEVRIISGDKDLLQLVSDNVKVLIPKGKTSFTEITPEYVVEKYGVTPDQLV 174

Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240
            L+AL GDS DNIPG+ GIG KTAA LLQE+G+LENI  N  +IK  K RE ++ + E A
Sbjct: 175 DLKALVGDSSDNIPGVKGIGEKTAAKLLQEFGSLENIYENLDQIKSAKMREKLIAHKEDA 234

Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300
            LS++L  + TDVP+ + LE L L + +  RL + L                        
Sbjct: 235 FLSKELATIVTDVPLEVDLEDLRLSEPDRERLYALL------------------------ 270

Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKT--SQFSSLSDQTSKINSEQTPQKLFLERLQKL 358
                             E++  + +    +  S + D  + + +E+T      E    L
Sbjct: 271 -----------------QELEFKSLLDRLENLESPVIDDHAPVLTEKTSCAKESEEAAPL 313

Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418
           +                       +   +G      + + +     K +A+A +T +Q  
Sbjct: 314 A--------------------NPAEKAEVG----GFVLERLLDQLKKALALAFATENQSY 349

Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478
              +  E   I L    + D                ++  NE   KIGH+ K+   +L R
Sbjct: 350 VA-YASEADGIPLLTILTDDK-------------FARWLLNEQIKKIGHDAKFLMHLLKR 395

Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537
            GI + G   D ML +Y+LD  + S  + ++A+++L        K              +
Sbjct: 396 EGIELGGVIFDTMLAAYLLDPAQVST-LDTLARRYLVEELILDEKIGGKLAKFAFPPLEE 454

Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597
             E+    +    +L   L  +L   KLL +Y  ++ P+  V+++ME TGI++D D L++
Sbjct: 455 ATEYLARRAAATKRLAEELLKELDENKLLSLYREIELPLSKVLAEMEKTGIKVDADYLQE 514

Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657
           +S E  + +  LEE IY+L+GE+FN++SPKQLG++LF KL  P G KTKTG + T A  L
Sbjct: 515 LSQEFGEEIADLEEEIYELAGEEFNINSPKQLGEVLFEKLGLPVGKKTKTG-YSTDADVL 573

Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717
           E++    +PII  ILE+RQL+K+KSTY D LP  +N  T R+HT ++   T TGRL+S  
Sbjct: 574 EKLRE-KHPIIALILEYRQLTKLKSTYVDGLPELVNPDTGRIHTTFNQTGTATGRLSSSN 632

Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777
           PNLQNIPI+++ G+KIR+AF++     LISADYSQIELR+LAH+++   L + F+N  DI
Sbjct: 633 PNLQNIPIRSEEGRKIRKAFVAEKGWLLISADYSQIELRVLAHLSQDENLIEAFQNGEDI 692

Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837
           H   A+ +FGV IE V+P MRR AKTINF ++YG+S F LA +L I R EA ++I+RYF 
Sbjct: 693 HTETASRLFGVEIEDVTPNMRRIAKTINFGVVYGMSAFGLAQELGISRKEAKEFIERYFA 752

Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897
           R+PG+ +YIE T    R+ GYVET+FGRR +  +INS   ++R   ER AINAPIQGSAA
Sbjct: 753 RYPGVKDYIENTVEEARKKGYVETLFGRRRYIPDINSRNRNVREAAERMAINAPIQGSAA 812

Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957
           DI + AMI + K L++ KL  ++LLQ+HDEL+FE PEEE    + ++   ME A      
Sbjct: 813 DIMKIAMIKLDKRLKERKLKARLLLQVHDELIFEAPEEEAEEVAALVKEVMEHA----YP 868

Query: 958 LRVPLKVNIKVSNNWQE 974
           L VPL+V +    NW E
Sbjct: 869 LAVPLEVEVGTGKNWGE 885