RPSBLAST alignment for GI: 254780277 and conserved domain: TIGR03674

>gnl|CDD|163388 TIGR03674, fen_arch, flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA. Length = 338

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 10/89 (11%)

Query: 150 PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209
           P   +Y  VK E I++E V+ + GI  E+++ +  L G   D   G+ GIG KTA  L++
Sbjct: 197 PGKNIYVEVKPELIELEEVLSELGITREQLIDIAILVG--TDYNEGVKGIGPKTALKLIK 254

Query: 210 EYGNLENILINASRIKQKKRRENILEYAE 238
           E+G+LE +L        K R E+I  Y E
Sbjct: 255 EHGDLEKVL--------KARGEDIENYDE 275