RPSBLAST alignment for GI: 254780277 and conserved domain: cd08640

>gnl|CDD|176477 cd08640, DNA_pol_A_plastid_like, DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the repair of errors occurring during replication. DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the repair of errors occurring during replication. Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). The three-dimensional structure of plastid DNA polymerase has substantial similarity to Pol I. The structure of Pol I resembles in overall morphology a cupped human right hand, with fingers (which bind an incoming nucleotide and interact with the single-stranded template), palm (which harbors the catalytic amino acid residues and also binds an incoming dNTP) and thumb (which binds double-stranded DNA) subdomains. Length = 371
 Score =  256 bits (656), Expect = 2e-68
 Identities = 119/330 (36%), Positives = 173/330 (52%), Gaps = 26/330 (7%)

Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727
           I+ + E + +S + ST+   L   +N  T R+H   ++ +T TGRL+S  PNLQN P   
Sbjct: 45  IEALKEIKSISTLLSTFIIPLQELLNDSTGRIHCSLNI-NTETGRLSSRNPNLQNQPALE 103

Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787
               KIR+AFI+ P   LI ADYSQ+ELR+LAH+ +   + + F    D H   A+ ++ 
Sbjct: 104 KDRYKIRKAFIASPGNTLIVADYSQLELRLLAHMTRCKSMIEAFNAGGDFHSRTASGMYP 163

Query: 788 VNIEKVSPQM-----------------------RRHAKTINFSIIYGISPFRLATQLRIP 824
              E V+                          RR AK +NFSI YG +   LA   ++ 
Sbjct: 164 HVAEAVANGEVLLEWKSEGKPPAPLLKDKFKSERRKAKVLNFSIAYGKTAHGLAKDWKVK 223

Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884
             EA   +  ++   P + ++ +KTK   R+ GY  T+ GR  +  +I S     R   E
Sbjct: 224 LKEAERTVDAWYSDRPEVEQWQKKTKKEARERGYTRTLLGRYRYLPDIKSRNRKKRGHAE 283

Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944
           RAAIN PIQGSAADI  +AM+ ++++L   +L  K+LLQIHDE++ E PEE+   A +I+
Sbjct: 284 RAAINTPIQGSAADIAMKAMLRIYRNLRLKRLGWKLLLQIHDEVILEGPEEKADEALKIV 343

Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974
              ME        L VPL+V+  V  NW E
Sbjct: 344 KDCMENP--FFGPLDVPLEVDGSVGYNWYE 371