Query gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 212
No_of_seqs 119 out of 5778
Neff 8.2
Searched_HMMs 39220
Date Tue May 24 15:20:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780278.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01295 phosphoglyceromutase; 100.0 0 0 396.1 16.0 205 1-205 1-205 (206)
2 TIGR01258 pgm_1 phosphoglycera 100.0 0 0 377.7 9.6 209 3-211 1-237 (248)
3 PRK01112 phosphoglyceromutase; 100.0 0 0 369.3 14.2 201 1-204 1-227 (228)
4 PRK07238 bifunctional RNase H/ 100.0 0 0 360.2 14.9 196 2-204 174-371 (375)
5 PRK13463 phosphatase PhoE; Pro 100.0 0 0 351.9 14.5 196 1-203 1-198 (203)
6 PRK03482 phosphoglycerate muta 100.0 0 0 336.1 14.5 187 1-195 1-187 (215)
7 PTZ00123 phosphoglycerate muta 100.0 0 0 332.2 10.6 198 15-212 1-223 (235)
8 PRK13462 acid phosphatase; Pro 100.0 0 0 325.7 14.5 194 3-210 6-200 (203)
9 COG0588 GpmA Phosphoglycerate 100.0 0 0 319.2 11.2 203 3-205 2-229 (230)
10 TIGR03162 ribazole_cobC alpha- 100.0 0 0 309.6 10.8 177 5-190 1-177 (177)
11 COG0406 phoE Broad specificity 100.0 0 0 296.8 14.9 191 1-196 1-191 (208)
12 KOG0235 consensus 100.0 2.8E-45 0 288.8 12.5 196 3-198 6-204 (214)
13 smart00855 PGAM Phosphoglycera 100.0 1.9E-39 4.9E-44 253.7 9.0 154 4-165 1-155 (155)
14 pfam00300 PGAM Phosphoglycerat 100.0 1.5E-38 3.9E-43 248.4 8.9 155 4-165 1-155 (155)
15 cd07067 HP_PGM_like Histidine 100.0 3.1E-35 8E-40 228.8 13.1 146 4-197 1-146 (153)
16 PTZ00322 6-phosphofructo-2-kin 100.0 1E-32 2.6E-37 213.9 10.2 185 2-192 419-624 (664)
17 KOG0234 consensus 100.0 5.8E-30 1.5E-34 197.6 12.9 189 3-203 240-428 (438)
18 cd07040 HP Histidine phosphata 100.0 5.6E-30 1.4E-34 197.7 11.1 144 4-195 1-144 (153)
19 PTZ00122 phosphoglycerate muta 99.9 4.2E-26 1.1E-30 174.7 12.2 172 3-202 104-281 (296)
20 KOG4609 consensus 99.9 5.1E-22 1.3E-26 150.5 9.6 171 2-200 94-267 (284)
21 KOG3734 consensus 99.8 2E-19 5.2E-24 135.1 9.4 171 1-175 11-219 (272)
22 KOG4754 consensus 99.8 2.1E-19 5.5E-24 134.9 8.1 182 3-188 15-220 (248)
23 PRK10848 phosphohistidine phos 99.8 3.2E-18 8.2E-23 128.0 10.1 142 4-197 2-143 (159)
24 COG2062 SixA Phosphohistidine 99.7 4.3E-17 1.1E-21 121.3 10.5 142 3-195 2-143 (163)
25 TIGR00249 sixA phosphohistidin 99.6 8.8E-15 2.3E-19 107.6 8.2 148 4-196 2-158 (169)
26 PRK06193 hypothetical protein; 99.5 2.5E-13 6.3E-18 99.0 9.6 142 4-196 49-195 (211)
27 cd07061 HP_HAP_like Histidine 97.2 0.00043 1.1E-08 44.2 3.8 59 5-74 6-74 (242)
28 pfam00328 Acid_phosphat_A Hist 97.0 0.001 2.7E-08 42.0 4.2 47 28-74 55-110 (330)
29 KOG3720 consensus 96.5 0.0047 1.2E-07 38.1 4.7 67 5-73 38-127 (411)
30 PRK10173 glucose-1-phosphatase 96.3 0.0096 2.4E-07 36.2 5.2 71 3-73 33-128 (413)
31 PRK10172 phosphoanhydride phos 95.4 0.038 9.7E-07 32.7 5.4 71 3-73 32-126 (432)
32 KOG1057 consensus 93.7 0.06 1.5E-06 31.5 3.0 46 28-73 511-571 (1018)
33 KOG1382 consensus 81.8 1.6 4E-05 23.1 3.2 49 27-75 131-184 (467)
34 TIGR01382 PfpI intracellular p 62.3 1.8 4.5E-05 22.8 -0.4 142 42-211 20-176 (189)
35 COG1121 ZnuC ABC-type Mn/Zn tr 53.3 5.3 0.00013 20.0 0.7 20 141-160 180-199 (254)
36 TIGR02275 DHB_AMP_lig 2,3-dihy 51.3 15 0.00039 17.3 2.8 21 24-44 20-40 (534)
37 cd03169 GATase1_PfpI_1 Type 1 48.1 9.4 0.00024 18.5 1.4 59 120-180 80-138 (180)
38 COG1245 Predicted ATPase, RNas 46.3 23 0.00058 16.2 3.1 41 125-167 240-280 (591)
39 COG0529 CysC Adenylylsulfate k 44.5 18 0.00047 16.8 2.4 62 26-89 69-134 (197)
40 PRK01544 bifunctional N5-gluta 44.0 25 0.00063 16.0 3.0 17 27-43 165-181 (503)
41 PRK10481 hypothetical protein; 43.8 10 0.00027 18.2 1.1 13 1-13 1-13 (224)
42 cd03235 ABC_Metallic_Cations A 42.3 6.6 0.00017 19.4 -0.2 21 142-162 174-194 (213)
43 TIGR01751 crot-CoA-red crotony 42.0 7.2 0.00018 19.2 -0.0 62 88-157 144-205 (409)
44 cd03226 ABC_cobalt_CbiO_domain 41.3 9.8 0.00025 18.4 0.6 23 140-162 166-188 (205)
45 cd03236 ABC_RNaseL_inhibitor_d 40.2 11 0.00028 18.1 0.7 35 129-165 170-204 (255)
46 pfam00762 Ferrochelatase Ferro 40.1 29 0.00073 15.7 6.1 35 26-60 62-100 (312)
47 PRK13543 cytochrome c biogenes 38.6 12 0.00031 17.9 0.7 25 138-162 175-199 (214)
48 pfam07302 AroM AroM protein. T 36.7 16 0.0004 17.2 1.0 11 92-102 33-43 (221)
49 COG3933 Transcriptional antite 36.0 33 0.00085 15.3 4.1 79 3-84 109-196 (470)
50 PRK07199 phosphoribosylpyropho 34.6 33 0.00085 15.3 2.4 36 39-76 150-185 (301)
51 TIGR02935 probable nitrogen fi 33.7 7.5 0.00019 19.1 -1.0 89 90-183 17-113 (140)
52 cd03269 ABC_putative_ATPase Th 33.3 12 0.00031 17.9 0.0 23 138-160 166-188 (210)
53 KOG2884 consensus 32.4 38 0.00098 14.9 3.4 42 33-74 90-133 (259)
54 TIGR02082 metH methionine synt 32.0 39 0.00099 14.9 2.8 130 28-178 91-221 (1265)
55 TIGR02344 chap_CCT_gamma T-com 30.7 24 0.00062 16.1 1.2 80 22-115 281-361 (527)
56 PRK13539 cytochrome c biogenes 30.6 17 0.00044 17.0 0.4 22 139-160 165-186 (206)
57 PRK11637 hypothetical protein; 30.1 17 0.00044 17.0 0.3 55 116-175 306-360 (404)
58 TIGR00972 3a0107s01c2 phosphat 27.9 27 0.00068 15.8 1.0 20 140-160 184-203 (248)
59 PRK13542 consensus 27.1 22 0.00056 16.3 0.5 22 139-160 186-207 (224)
60 cd03238 ABC_UvrA The excision 26.8 22 0.00056 16.3 0.4 14 147-160 136-149 (176)
61 TIGR01979 sufS cysteine desulf 26.6 36 0.00093 15.0 1.5 164 27-206 144-345 (409)
62 pfam06787 UPF0254 Uncharacteri 26.6 48 0.0012 14.3 2.7 12 151-162 99-110 (160)
63 PRK11231 fecE iron-dicitrate t 25.5 24 0.00061 16.1 0.4 22 141-162 179-200 (255)
64 TIGR01544 HAD-SF-IE HAD-superf 25.4 51 0.0013 14.2 2.4 79 73-170 75-166 (287)
65 pfam02500 DNA_pack_N Probable 25.4 34 0.00088 15.2 1.2 15 160-174 199-213 (276)
66 cd03266 ABC_NatA_sodium_export 24.5 30 0.00075 15.6 0.7 20 141-160 177-196 (218)
67 TIGR02194 GlrX_NrdH Glutaredox 24.4 51 0.0013 14.2 1.9 58 36-102 11-68 (72)
68 pfam02450 LACT Lecithin:choles 24.3 45 0.0012 14.5 1.7 29 129-160 100-128 (382)
69 cd03230 ABC_DR_subfamily_A Thi 24.2 27 0.00069 15.8 0.5 21 141-161 136-156 (173)
70 smart00195 DSPc Dual specifici 24.1 54 0.0014 14.0 2.0 50 126-179 58-113 (138)
71 PRK13540 cytochrome c biogenes 23.7 28 0.00071 15.7 0.5 21 141-161 168-188 (200)
72 TIGR03608 L_ocin_972_ABC putat 23.4 30 0.00075 15.6 0.6 17 146-162 180-196 (206)
73 PRK13544 consensus 23.2 30 0.00077 15.5 0.6 25 138-162 164-188 (208)
74 PRK13548 hmuV hemin importer A 22.9 26 0.00066 15.9 0.2 21 142-162 182-202 (257)
75 COG3910 Predicted ATPase [Gene 22.7 58 0.0015 13.9 3.1 20 143-162 171-190 (233)
76 cd03268 ABC_BcrA_bacitracin_re 22.0 32 0.00083 15.3 0.5 21 140-160 166-186 (208)
77 cd03225 ABC_cobalt_CbiO_domain 21.7 32 0.00081 15.4 0.4 22 141-162 175-196 (211)
78 PRK13538 cytochrome c biogenes 21.2 45 0.0011 14.5 1.1 23 140-162 169-191 (204)
79 pfam09370 TIM-br_sig_trns TIM- 21.2 36 0.00092 15.1 0.7 36 125-164 191-226 (268)
80 PRK12270 kgd alpha-ketoglutara 21.2 62 0.0016 13.7 3.9 53 118-178 525-579 (1234)
81 pfam07431 DUF1512 Protein of u 20.9 50 0.0013 14.2 1.3 34 129-162 319-352 (356)
82 cd03218 ABC_YhbG The ABC trans 20.6 29 0.00073 15.6 0.0 21 141-161 174-194 (232)
83 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 20.5 38 0.00097 14.9 0.6 20 142-161 184-203 (224)
84 cd03215 ABC_Carb_Monos_II This 20.4 35 0.00089 15.1 0.4 21 141-161 145-165 (182)
No 1
>PRK01295 phosphoglyceromutase; Provisional
Probab=100.00 E-value=0 Score=396.05 Aligned_cols=205 Identities=59% Similarity=0.989 Sum_probs=196.3
Q ss_pred CCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 98589999567611102684204757555989899999999998751888427742332243100011221001332122
Q gi|254780278|r 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITP 80 (212)
Q Consensus 1 M~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~ 80 (212)
|+++|||||||||+||..+||||+.|+|||+.|++||+.+|+.|++.++.||.+|||||+||+|||++|++.++...+++
T Consensus 1 M~~~L~LvRHGeT~~N~~~r~qG~~D~~Lte~G~~QA~~~~~~L~~~~~~~d~iysSpL~RA~~TA~~I~~~lg~~~~~v 80 (206)
T PRK01295 1 MSRLLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELGQPGLET 80 (206)
T ss_pred CCEEEEEEECCCCHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 97079999799994675396638999996989999999999999976997788997812578999999999827889983
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCH
Q ss_conf 22210144434310111235688621101200102333321123112356553101001210000023324115646806
Q gi|254780278|r 81 IYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 81 ~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~ 160 (212)
..+++|+|++||.|||++.+|+.++||++...+|+++++++||+|||+.|+++|+.+++.+.+.+...++++|||||||+
T Consensus 81 ~~d~~LrE~~fG~wEG~~~~ei~~~~~~~~~~~~~~~~~~~pP~GES~~~~~~Rv~~~~~~~i~~~~~~g~~VLvVsHG~ 160 (206)
T PRK01295 81 IRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGN 160 (206)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 75575254775334699899999867899999865346789959613999999988999999999987799699995857
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 999999998589977863231799619999988999688997137
Q gi|254780278|r 161 SLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIMR 205 (212)
Q Consensus 161 ~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~~~~~~~~ 205 (212)
+||+|+++++|+++++++++.++||.+++|+++.|++++++.++-
T Consensus 161 ~iR~l~~~~~gl~~e~~~~l~i~~G~~~v~~~~~~~~~~~~~~~~ 205 (206)
T PRK01295 161 SLRALIMVLDGLTPEQILKLELATGVPIVYRLNADSTVASKEVLA 205 (206)
T ss_pred HHHHHHHHHCCCCHHHHHHEECCCCCEEEEEECCCCCEEEEEECC
T ss_conf 999999998098989996305889987999986999873444046
No 2
>TIGR01258 pgm_1 phosphoglycerate mutase 1 family; InterPro: IPR005952 Most members of this family are phosphoglycerate mutase (5.4.2.1 from EC). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. 2-phospho-D-glycerate + 2,3-diphosphoglycerate = 3-phospho-D-glycerate + 2,3-diphosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (5.4.2.4 from EC). ; GO: 0016868 intramolecular transferase activity phosphotransferases, 0006096 glycolysis.
Probab=100.00 E-value=0 Score=377.73 Aligned_cols=209 Identities=46% Similarity=0.718 Sum_probs=202.5
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 58999956761110268420475755598989999999999875188842774233224310001122100133212222
Q gi|254780278|r 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIY 82 (212)
Q Consensus 3 ~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~ 82 (212)
.+|.|||||||+||..|+|+||+|++||+.|.+.|+..|+.|+++++.||.+|||=|+||++|+.++++++++..||+..
T Consensus 1 ~kLVLvRHGeSeWN~~NlFTGW~Dv~L~~kG~~EA~~AG~lLke~g~~FD~ayTS~LkRAI~Tl~~~L~~ldq~WlPV~k 80 (248)
T TIGR01258 1 MKLVLVRHGESEWNKENLFTGWVDVELTEKGQEEAKRAGKLLKEEGYEFDIAYTSLLKRAIHTLNIVLDELDQLWLPVKK 80 (248)
T ss_pred CCEEEEECCCCHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCEECCCCC
T ss_conf 93057765863220025754444178685228999999999996599876211012678999999999985880113102
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC---------------------------CCHHHHHHHHHH
Q ss_conf 21014443431011123568862110120010233332112---------------------------311235655310
Q gi|254780278|r 83 DDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP---------------------------GGESLRDTVARV 135 (212)
Q Consensus 83 ~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p---------------------------~GES~~~~~~Rv 135 (212)
.=+|||+|||+++||+++|..+||+++.+..||++||++|| -+||+.++.+||
T Consensus 81 sWRLNERHYGaLQGLnK~ETa~KYGeeQV~~WRRSfDv~PPpld~~d~~~psi~~D~RYa~~~~~~lP~tEsLk~T~~Rv 160 (248)
T TIGR01258 81 SWRLNERHYGALQGLNKAETAAKYGEEQVKIWRRSFDVPPPPLDEKDPRSPSIGKDPRYAGLDPKVLPLTESLKDTVARV 160 (248)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 24233440331379887999976060103012213578517898887767655678310057743577555778899650
Q ss_pred CCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEE-ECCCCCCCC
Q ss_conf 1001210000023324115646806999999998589977863231799619999988999688997-137822015
Q gi|254780278|r 136 LAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKN-IMRGQSPAE 211 (212)
Q Consensus 136 ~~~~~~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~~~~~-~~~~~~p~~ 211 (212)
.++|.+.|.+.+.+|++||||+||+.+|+|+.||.+++.+++++++||||.+.+|+|+.+.+++++. ++++.+.+.
T Consensus 161 lPYW~d~I~p~l~~GK~VLI~AHGNSLRALvKhL~~~Sd~~Il~LNIPTGiPLvyeLd~~l~p~~~~~YLgD~~~~~ 237 (248)
T TIGR01258 161 LPYWNDEIAPELKSGKRVLIAAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDEELKPVKKYRYLGDEEAAA 237 (248)
T ss_pred CCCHHHEEHHHHHCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHCCCCCCEECCCCCCCCHHHHH
T ss_conf 65311110135446897999822804899999861279468850459875533410001377201576688989999
No 3
>PRK01112 phosphoglyceromutase; Provisional
Probab=100.00 E-value=0 Score=369.34 Aligned_cols=201 Identities=43% Similarity=0.708 Sum_probs=184.4
Q ss_pred CCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCC------
Q ss_conf 98589999567611102684204757555989899999999998751888427742332243100011221001------
Q gi|254780278|r 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEIN------ 74 (212)
Q Consensus 1 M~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~------ 74 (212)
|+ +|||||||||+||..+|||||+|+|||+.|++||+.+|+.|++ +.||+||||||+||+|||++++....
T Consensus 1 M~-~l~LvRHGeTewN~~~r~~G~~D~pLte~G~~qA~~ag~~L~~--~~~d~iysS~L~RA~~TA~iil~~~~~~~i~~ 77 (228)
T PRK01112 1 MA-LLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIIAGCKIKD--LPIDCIFTSTLVRSLMTALLAMTNHSSGKIPY 77 (228)
T ss_pred CC-EEEEEECCCCHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98-7999989899578769058999997189999999999998308--99899997972999999999997431245552
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf --------------------332122222101444343101112356886211012001023333211231123565531
Q gi|254780278|r 75 --------------------QQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVAR 134 (212)
Q Consensus 75 --------------------~~~~~~~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~R 134 (212)
...+|+..+.+|+|++||.|||++++|+.++||++.+..|+++++++||+|||+.|+++|
T Consensus 78 i~~~~~~~~~~~~~~~~~~~~~~ipi~~~~~L~Er~yG~~eG~~~~e~~~~~g~e~~~~wr~~~~~~pP~GESl~dv~~R 157 (228)
T PRK01112 78 IVHEDDDRKWMSRIYSDEEPNQMIPLFQSSALNERMYGELQGKNKAETAEQFGEEQVKLWRRSYKIAPPGGESLEDTGQR 157 (228)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 01311344333101112233445652304003124467677989999999965898877564246799797789999999
Q ss_pred HCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 0100121000002332411564680699999999858997786323179961999998899968899713
Q gi|254780278|r 135 VLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIM 204 (212)
Q Consensus 135 v~~~~~~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~~~~~~~ 204 (212)
+.++|.+.|.+...++++|||||||++||+|++++.+++.+++.++.+|||.+.+|+|+.+.-+..+.++
T Consensus 158 v~~~~~~~I~~~~~~g~nVLIVaHG~~iRali~~l~~ls~e~i~~l~ip~g~p~vy~~d~~~~~~~~~~~ 227 (228)
T PRK01112 158 TLPYFQERILPHLQQGKNVFISAHGNSLRSLIMDLEKLSEEEVLSLELPTGVPIVYEWDGQKFEKHKEVL 227 (228)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEECCCCCEECCCCC
T ss_conf 9999999878999779969999077799999999858999999545078897489997599745114038
No 4
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=100.00 E-value=0 Score=360.17 Aligned_cols=196 Identities=28% Similarity=0.386 Sum_probs=176.8
Q ss_pred CCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 85899995676111026842047575559898999999999987518884277423322431000112210013321222
Q gi|254780278|r 2 NRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPI 81 (212)
Q Consensus 2 ~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~ 81 (212)
.+||||||||||+||.++||||+.|+|||+.|++||+.++++|++. .++|+||||||+||+|||++|++.++ +++.
T Consensus 174 pTrl~LVRHGeT~~N~~~r~qG~~D~pLTe~Gr~QA~~la~~La~~-~~iDaIySSPL~RA~eTAe~Ia~~lg---l~v~ 249 (375)
T PRK07238 174 PTRLLLLRHGQTELSVQRRYSGRGNPELTELGRRQAAAAARYLAGR-GGIDAVVSSPLQRAYDTAEAAAKALG---LDVT 249 (375)
T ss_pred CEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCC-CCCCEEEECCHHHHHHHHHHHHHHCC---CCCE
T ss_conf 8599998588887655675247999987878999999999998466-99888998973999999999998519---9927
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHH
Q ss_conf 22101444343101112356886211012001023333211231123565531010012100000233241156468069
Q gi|254780278|r 82 YDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNS 161 (212)
Q Consensus 82 ~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ 161 (212)
++++|+|++||.|||++++|+.++||+.+..|+ .+.++.||||||+.++.+|+..++.+++. .+.+++|+||||+++
T Consensus 250 ~d~~LrE~dfG~WEG~t~~Ei~~~~Pe~~~~W~-~dp~~~pPgGES~~~v~~Rv~~al~~i~~--~h~G~tVlVVsHggv 326 (375)
T PRK07238 250 VDDDLIETDFGAWEGLTFAEAAERDPELHRRWL-ADTSVAPPGGESFDDVARRVRRARDRIIA--EYPGATVLVVSHVTP 326 (375)
T ss_pred ECHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEECHHH
T ss_conf 873101378885358818999877999999876-08899995996899999999999999998--789993999968599
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCC-EE-EEEEC
Q ss_conf 999999985899778632317996199999889996-88-99713
Q gi|254780278|r 162 LRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADAS-IV-SKNIM 204 (212)
Q Consensus 162 ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~-~~-~~~~~ 204 (212)
||++++++++.|+..+++|.++||+++++++..++. .+ ..|-.
T Consensus 327 IR~ll~~aLg~p~~~~~r~~ld~aSiSvi~~~~dG~~~lr~~NDt 371 (375)
T PRK07238 327 IKTLLRLALDAGPGVLYRLHLDLASLSIAEFYPDGAASVRLVNDT 371 (375)
T ss_pred HHHHHHHHHCCCHHHHCEEEECCCEEEEEEEECCCCEEEEEEECC
T ss_conf 999999997879889343211686189999957985578887210
No 5
>PRK13463 phosphatase PhoE; Provisional
Probab=100.00 E-value=0 Score=351.90 Aligned_cols=196 Identities=21% Similarity=0.365 Sum_probs=177.1
Q ss_pred CCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 98589999567611102684204757555989899999999998751888427742332243100011221001332122
Q gi|254780278|r 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITP 80 (212)
Q Consensus 1 M~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~ 80 (212)
|+++|||||||||+||..+++||+.|+|||+.|++||+.+|+.|++ .+|++||||||+||+|||++|+... .+|+
T Consensus 1 M~t~iylvRHGeT~~N~~~~~qG~~D~~Lt~~G~~QA~~l~~~l~~--~~~~~i~sSpl~Ra~eTA~~i~~~~---~l~i 75 (203)
T PRK13463 1 MKTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMKD--LSIHAIYSSPSERTLHTAELIKGER---DIPI 75 (203)
T ss_pred CCEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCC--CCCCEEECCCCCCCHHHHHHHHHCC---CCCE
T ss_conf 9538999768988330278078999998399999999999876147--8878898078657899999998537---9977
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCH
Q ss_conf 22210144434310111235688621101200102333321123112356553101001210000023324115646806
Q gi|254780278|r 81 IYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 81 ~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~ 160 (212)
..+++|+|++||.|||++.+|+.++||+.+..+|..+..+.+|+|||+.++.+|+..++.+++. ...+++|||||||+
T Consensus 76 ~~~~~L~E~~~G~weG~~~~e~~~~~p~~~~~~~~~~~~~~~~~GEs~~~~~~Rv~~~l~~i~~--~~~~~~vlvVsHg~ 153 (203)
T PRK13463 76 IADEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLE--KHKGESILIVSHAA 153 (203)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEECHH
T ss_conf 8770411278873369918999987999999986291226899998999999999999999998--88989199993979
Q ss_pred HHHHHHHHHHCCCHHHHHC-CCCCCCEEEEEEECCC-CCEEEEEE
Q ss_conf 9999999985899778632-3179961999998899-96889971
Q gi|254780278|r 161 SLRSLIMVLEKITVDDIPK-VTIGTGEAFVYQLGAD-ASIVSKNI 203 (212)
Q Consensus 161 ~ir~l~~~l~~~~~~~~~~-~~i~~g~~~i~~~~~~-~~~~~~~~ 203 (212)
+||+++++++|++.+.+++ ..++||++++++++.+ ..+..+|-
T Consensus 154 ~ir~ll~~~lg~~~~~~~~~~~~~n~sisvi~~~~g~~~l~~~nd 198 (203)
T PRK13463 154 AAKLLVGHFAGIEIENVWDDPFMHSASLSIIEFEDGKGEVKQFAD 198 (203)
T ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEEEECCEEEEEEECC
T ss_conf 999999998198978972568876767999999899699999813
No 6
>PRK03482 phosphoglycerate mutase; Provisional
Probab=100.00 E-value=0 Score=336.13 Aligned_cols=187 Identities=23% Similarity=0.314 Sum_probs=169.5
Q ss_pred CCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 98589999567611102684204757555989899999999998751888427742332243100011221001332122
Q gi|254780278|r 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITP 80 (212)
Q Consensus 1 M~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~ 80 (212)
|. +|||||||||+||..++++|+.|+|||+.|++||+.++++|++ ..+|.||||||+||+|||++|++..+ +++
T Consensus 1 M~-~i~LvRHGet~~N~~~~~qG~~D~pLt~~G~~QA~~l~~~l~~--~~id~iysSpL~Ra~qTA~~i~~~~~---~~~ 74 (215)
T PRK03482 1 ML-QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERARE--LGITHIISSDLGRTRRTAEIIAQACG---CDI 74 (215)
T ss_pred CC-EEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHHHHCC---CCC
T ss_conf 98-8999969988654466664899996699999999999877643--69878996986689999999998609---984
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCH
Q ss_conf 22210144434310111235688621101200102333321123112356553101001210000023324115646806
Q gi|254780278|r 81 IYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 81 ~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~ 160 (212)
+.+++|+|++||.|||++.+++...++.....++..+.+..+|+|||+.++.+|+..++++++. ...+++|+|||||+
T Consensus 75 ~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~v~~Rv~~~l~~i~~--~~~g~~vlvVsHg~ 152 (215)
T PRK03482 75 IFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIPEGESMQELSDRVHAALESCLE--LPQGSRPLLVSHGI 152 (215)
T ss_pred CCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEECHH
T ss_conf 0171344440573458867786354799999874089656789997899999999999999999--78999699998969
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 99999999858997786323179961999998899
Q gi|254780278|r 161 SLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195 (212)
Q Consensus 161 ~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~ 195 (212)
+||+++++++|++...++++.++||++++++++.+
T Consensus 153 vir~ll~~~Lg~~~~~~~~~~i~N~Sit~i~y~~~ 187 (215)
T PRK03482 153 ALGCLVSTILGLPAWAERRLRLRNCSISRVDYQES 187 (215)
T ss_pred HHHHHHHHHHCCCHHHCCCEEECCCEEEEEEEECC
T ss_conf 99999999968995226214633888999998689
No 7
>PTZ00123 phosphoglycerate mutase I; Provisional
Probab=100.00 E-value=0 Score=332.24 Aligned_cols=198 Identities=41% Similarity=0.709 Sum_probs=191.3
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 10268420475755598989999999999875188842774233224310001122100133212222210144434310
Q gi|254780278|r 15 WNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDDALNERDYGHI 94 (212)
Q Consensus 15 ~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~~~L~E~~~G~~ 94 (212)
||..++||||+|+|||+.|++||+.+|+.|++.++.||.+|||+|+||++||++|++.++...+|+..+.+|+|++||.|
T Consensus 1 WN~~n~ftGw~Dv~Lt~~G~~qA~~ag~~Lk~~~~~fd~~~TS~L~RA~~Ta~iIL~~l~~~~ipi~~~wrLNERhYG~L 80 (235)
T PTZ00123 1 WNKENRFTGWTDVDLSEKGVQEAREAGELLKEEGFRFDVVYTSVLKRAIKTANIVLETLNQLWVPVTKTWRLNERHYGAL 80 (235)
T ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEECCHHHHCCCHHH
T ss_conf 96426344888899598999999999999997599889898561199999999999730567887144201211211444
Q ss_pred HHHHHHHHHHHCCHHHHHHCCCCCCCCCC-------------------------CCHHHHHHHHHHCCHHHHHHHCCCCC
Q ss_conf 11123568862110120010233332112-------------------------31123565531010012100000233
Q gi|254780278|r 95 AGMNKDDVCNKWGAEQVHLWRRSYSVAPP-------------------------GGESLRDTVARVLAYYVQFILPLILQ 149 (212)
Q Consensus 95 eG~~~~e~~~~~~~~~~~~~~~~~~~~~p-------------------------~GES~~~~~~Rv~~~~~~~i~~~~~~ 149 (212)
+|++++|+.++|+++.+..|+++|+.+|| +|||+.|+.+|+.++|.+.|.+....
T Consensus 81 ~GlnK~e~~~k~G~eqv~~WRRsyd~~PP~~~~~~~~~~~~d~~y~~~~~~~lP~gESLkd~~~Rv~p~~~~~I~p~l~~ 160 (235)
T PTZ00123 81 QGLNKSETAKKYGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYADVPKDALPNTESLKDTVERVLPYWEDHIAPDIKA 160 (235)
T ss_pred HCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 23542999997599999999860678998677667446322843326983348886629999999788899997999834
Q ss_pred CCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 241156468069999999985899778632317996199999889996889971378220159
Q gi|254780278|r 150 NKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIMRGQSPAEK 212 (212)
Q Consensus 150 ~~~vliVsHg~~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~~~~~~~~~~~p~~~ 212 (212)
|++||||+||++||+|++++.+++.+++.++++|||.+.+|+||.+..++++.++.+.+.++|
T Consensus 161 gk~VLIVaHGNsLRaLvk~L~~isd~~I~~l~iptg~Plvye~d~~~~~~~~~yl~d~~~~~~ 223 (235)
T PTZ00123 161 GKPVLVAAHGNSLRALVKYLDNMSEADILELNIPTGVPLVYEFDENLKVIKKYYLLDEEELKA 223 (235)
T ss_pred CCCEEEEEECHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 795899973757999999984899999742457888717999589898566722789999999
No 8
>PRK13462 acid phosphatase; Provisional
Probab=100.00 E-value=0 Score=325.68 Aligned_cols=194 Identities=22% Similarity=0.340 Sum_probs=166.8
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 58999956761110268420475755598989999999999875188842774233224310001122100133212222
Q gi|254780278|r 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIY 82 (212)
Q Consensus 3 ~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~ 82 (212)
.||||||||||+||..++|+|++|+|||+.|++||+.+|+.|++..+..+.||||||+||+|||+++... + ..+
T Consensus 6 ~rl~LvRHGeT~~N~~~r~~G~~D~~Lt~~G~~QA~~~~~~L~~~~~~~~~i~sS~L~Ra~~TA~~~~~~-----~-~~~ 79 (203)
T PRK13462 6 HRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRRALDTAELAGLT-----V-DEV 79 (203)
T ss_pred CEEEEEECCCCHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHCCC-----C-CCC
T ss_conf 8899996988847755877289999879999999999999986189999989759539999999985776-----5-531
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 21014443431011123568862110120010233332112311235655310100121000002332411564680699
Q gi|254780278|r 83 DDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 83 ~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~i 162 (212)
+++|+|++||.|||++.+|+.+.+|+.. .|. ..+|+|||+.++.+|+..++++++. ..++++|+|||||++|
T Consensus 80 ~~~L~E~~~G~weG~~~~ei~~~~p~~~--~~~----~~~P~GES~~~~~~Rv~~~l~~i~~--~~~~~~vlvVsHg~~i 151 (203)
T PRK13462 80 SELLAEWDYGSYEGLTTPQIRESEPDWL--VWT----HGCPGGESVAQVNERADRAVALALE--HMESRDVVFVSHGHFS 151 (203)
T ss_pred CHHHHHCCCCCCCCCCHHHHHHHCCCCE--EEC----CCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCEEEEEECCHHH
T ss_conf 4456521687613654899986494313--433----6899997899999999999999998--7799818999484899
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCC-CEEEEEECCCCCCC
Q ss_conf 9999998589977863231799619999988999-68899713782201
Q gi|254780278|r 163 RSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADA-SIVSKNIMRGQSPA 210 (212)
Q Consensus 163 r~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~-~~~~~~~~~~~~p~ 210 (212)
|+++++++++|.+.+++|.++||++++++++.+. .+...|-..+..|.
T Consensus 152 R~ll~~~lg~~~~~~~~~~~~n~sisv~~~~~g~~~l~~ln~t~H~~~~ 200 (203)
T PRK13462 152 RAVITRWVELPLAEGSRFAMPTASIAICGFEHGVRQLSALGLTGHPQPI 200 (203)
T ss_pred HHHHHHHHCCCHHHHHEEECCCCEEEEEEEECCCEEEEEEECCCCCCCC
T ss_conf 9999999597975700775279828999987893556653254698999
No 9
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=319.21 Aligned_cols=203 Identities=50% Similarity=0.794 Sum_probs=196.3
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 58999956761110268420475755598989999999999875188842774233224310001122100133212222
Q gi|254780278|r 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIY 82 (212)
Q Consensus 3 ~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~ 82 (212)
.+|+|+|||||+||..|+|+||.|++||+.|++||...|+.|++.++.||.+|||-|+||++|+.+++++++...+|+..
T Consensus 2 ~~Lvl~RHGqSeWN~~NlFtGW~Dv~LtekG~~EA~~ag~llk~~~~~~dia~TS~L~RAi~T~~i~L~e~d~~~ipv~k 81 (230)
T COG0588 2 MKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVIK 81 (230)
T ss_pred CEEEEEECCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 55899955702442137542366067563429999999899997598712441378999999999886354156761656
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC---------------------CC----HHHHHHHHHHCC
Q ss_conf 21014443431011123568862110120010233332112---------------------31----123565531010
Q gi|254780278|r 83 DDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP---------------------GG----ESLRDTVARVLA 137 (212)
Q Consensus 83 ~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p---------------------~G----ES~~~~~~Rv~~ 137 (212)
+-+|+|++||.++|+++++..++|+++++..|+++|+.+|| +| ||+.++.+|+.+
T Consensus 82 swrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~Rv~P 161 (230)
T COG0588 82 SWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLP 161 (230)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 78861020045434785999998728999999984479989766454123233533333443478753149999998636
Q ss_pred HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 01210000023324115646806999999998589977863231799619999988999688997137
Q gi|254780278|r 138 YYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIMR 205 (212)
Q Consensus 138 ~~~~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~~~~~~~~ 205 (212)
+|.+.|.+...+|++|+||+||.++|+|++++.+++.+++.++++|||.+.+|+++.|..+++..++.
T Consensus 162 yw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld~~l~~~~~~yL~ 229 (230)
T COG0588 162 YWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLKVISAYYLG 229 (230)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 78887568875798699992662599999998479988852012689995799987997570434668
No 10
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=100.00 E-value=0 Score=309.63 Aligned_cols=177 Identities=26% Similarity=0.434 Sum_probs=160.1
Q ss_pred EEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 99995676111026842047575559898999999999987518884277423322431000112210013321222221
Q gi|254780278|r 5 LVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDD 84 (212)
Q Consensus 5 i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~~ 84 (212)
|||||||||+||.++++ |+.|+|||+.|++||+.+|+.|++ .+++.|||||++||+|||+++++.++ .++++++
T Consensus 1 i~lvRHGqt~~n~~~~~-g~~D~~Lt~~G~~QA~~l~~~l~~--~~~~~i~sSpl~Ra~qTA~~i~~~~~---~~~~~~~ 74 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKLAD--VPFDAVYSSPLSRCRELAEILAERRG---LPIIKDP 74 (177)
T ss_pred CEEECCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCC--CCCCEEEECCCHHHHHHHHHHHHHCC---CCEEECH
T ss_conf 98975886867677868-998987899999999999988649--99898998980899999999998528---9722377
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHH
Q ss_conf 01444343101112356886211012001023333211231123565531010012100000233241156468069999
Q gi|254780278|r 85 ALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRS 164 (212)
Q Consensus 85 ~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~ 164 (212)
+|+|++||.|+|++++++.++|++ +..+|.++.++.+|+|||+.++++|+..++++++. ..++++|+|||||++|++
T Consensus 75 ~L~E~~~G~~eg~~~~~l~~~~~~-~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~~~~l~~--~~~~~~vlvVsHg~~i~~ 151 (177)
T TIGR03162 75 RLREMDFGDWEGRSWDEIPEAYPE-LDAWAADWQHARPPGGESFADFYQRVSEFLEELLK--AEEGDNVLIVTHGGVIRA 151 (177)
T ss_pred HHHHCCCCCCCCCCHHHHHHHCHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HHCCCCEEEEECHHHHHH
T ss_conf 675302586569989999887888-99987283347999996899999999999999999--845996599827899999
Q ss_pred HHHHHHCCCHHHHHCCCCCCCEEEEE
Q ss_conf 99998589977863231799619999
Q gi|254780278|r 165 LIMVLEKITVDDIPKVTIGTGEAFVY 190 (212)
Q Consensus 165 l~~~l~~~~~~~~~~~~i~~g~~~i~ 190 (212)
++++++|+|.+.+++|.++||+++++
T Consensus 152 l~~~~lgl~~~~~~~~~i~n~sit~l 177 (177)
T TIGR03162 152 LLAHLLGLPLEQWWSFDVEYGSITLI 177 (177)
T ss_pred HHHHHHCCCHHHHHHCCCCCCCEEEC
T ss_conf 99999692999985186799855649
No 11
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=100.00 E-value=0 Score=296.83 Aligned_cols=191 Identities=32% Similarity=0.553 Sum_probs=174.3
Q ss_pred CCCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 98589999567611102684204757555989899999999998751888427742332243100011221001332122
Q gi|254780278|r 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITP 80 (212)
Q Consensus 1 M~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~ 80 (212)
|..+|||||||||.||..++++|+.|+|||+.|++||+.+++.|+.....++.|||||++||+|||+++++.++ +++
T Consensus 1 ~~~~i~lvRHGqt~~n~~~~~~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sS~l~Ra~~TA~~~a~~~~---~~~ 77 (208)
T COG0406 1 MMMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKRAQQTAEPLAEELG---LPL 77 (208)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCC---CCC
T ss_conf 97479998489866654467478899996877999999999998646789776882754419999999998729---973
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCH
Q ss_conf 22210144434310111235688621101200102333321123112356553101001210000023324115646806
Q gi|254780278|r 81 IYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 81 ~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~ 160 (212)
..+++|+|++||.|||++.+|+.+++|.....+..+++.+.+|+|||+.++..|+..++.++... ..+++|+|||||+
T Consensus 78 ~~~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~i~~~~~~--~~~~~vlvVsHg~ 155 (208)
T COG0406 78 EVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRS--PPGNNVLVVSHGG 155 (208)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--CCCCEEEEEECHH
T ss_conf 24533243676435798889998607788862124842258998844999999999999999985--5898599998949
Q ss_pred HHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf 999999998589977863231799619999988999
Q gi|254780278|r 161 SLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADA 196 (212)
Q Consensus 161 ~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~ 196 (212)
+||+|++++++.+.....++.++||++++++++.+.
T Consensus 156 ~ir~l~~~~~~~~~~~~~~~~~~~~si~~l~~~~~~ 191 (208)
T COG0406 156 VIRALLAYLLGLDLEELWRLRLDNASVTVLEFDDGR 191 (208)
T ss_pred HHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 999999997289911455246898649999976985
No 12
>KOG0235 consensus
Probab=100.00 E-value=2.8e-45 Score=288.84 Aligned_cols=196 Identities=39% Similarity=0.657 Sum_probs=182.2
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 58999956761110268420475755598989999999999875188842774233224310001122100133212222
Q gi|254780278|r 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIY 82 (212)
Q Consensus 3 ~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~ 82 (212)
.+++|||||||+||.+|+||||.|.+||+.|.+||+.+++.|.+.++.++.+|||||+||+|||+++++..++..+|+..
T Consensus 6 ~~lvlvRHGes~wN~e~~~~G~~D~~Lte~G~~qA~~~~~~l~~~~~~~~~~~tS~l~RakqT~~~il~~~~~~~~pv~~ 85 (214)
T KOG0235 6 FRLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAKQTAELILEELKQKKVPVLY 85 (214)
T ss_pred EEEEEEECCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 38999716822445407515552576576649999999998875387656785277888999999998862667763672
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHH-HHCCCC--CCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 21014443431011123568862110120-010233--332112311235655310100121000002332411564680
Q gi|254780278|r 83 DDALNERDYGHIAGMNKDDVCNKWGAEQV-HLWRRS--YSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHG 159 (212)
Q Consensus 83 ~~~L~E~~~G~~eG~~~~e~~~~~~~~~~-~~~~~~--~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg 159 (212)
+.+|+|++||.++|+++.|+.++++++.. ..|+.. ....+|.|||+.++.+|+.++|.+.|.+...++++|+||+||
T Consensus 86 ~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHG 165 (214)
T KOG0235 86 TWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHG 165 (214)
T ss_pred CHHHCHHHHCCCCCCCHHHHHHHCCHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 12235354054237317999977051001331233047767799876689999998898987656540478679997585
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCE
Q ss_conf 699999999858997786323179961999998899968
Q gi|254780278|r 160 NSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASI 198 (212)
Q Consensus 160 ~~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~ 198 (212)
.++|+++.++.|++.+....+++++|.+.+++++.+...
T Consensus 166 nsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ld~~~~~ 204 (214)
T KOG0235 166 NSLRAIVKHLEGISDEAIKELNLPTGVPIVYELDKNKIP 204 (214)
T ss_pred HHHHHHHHHHHCCCHHHHHHEECCCCCCEEEECCCCCCC
T ss_conf 789999999826887666540145677269972555300
No 13
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=100.00 E-value=1.9e-39 Score=253.72 Aligned_cols=154 Identities=36% Similarity=0.569 Sum_probs=133.1
Q ss_pred EEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 89999567611102684204757555989899999999998751-88842774233224310001122100133212222
Q gi|254780278|r 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQ-GMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIY 82 (212)
Q Consensus 4 ~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~-~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~ 82 (212)
||||||||||++|..++++|+.|+|||+.|++||+.++++|++. +..+++||||||+||+|||+++++..+. + .+
T Consensus 1 ~i~lvRHg~s~~n~~~~~~g~~d~~Lt~~G~~Qa~~l~~~l~~~~~~~~~~i~sSpl~R~~qTa~~i~~~~~~---~-~~ 76 (155)
T smart00855 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLGRLRFDVIYSSPLLRARETAEALAIALGL---G-EV 76 (155)
T ss_pred CEEEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCC---C-CC
T ss_conf 9899808988331058656999988397899999999999997369998989979758999999999987387---7-74
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 21014443431011123568862110120010233332112311235655310100121000002332411564680699
Q gi|254780278|r 83 DDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 83 ~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~i 162 (212)
++.|+|+++|.|+|++..++.+.++... .....+.+|+|||+.+++.|+..++.+++.....++++|||||||++|
T Consensus 77 ~~~L~E~~~g~~~g~~~~~~~~~~~~~~----~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~~~ilivtHg~~i 152 (155)
T smart00855 77 DPRLRERDYGAWEGLTKEEERAKAWTRP----ADWLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVI 152 (155)
T ss_pred CCCCEECCCCCCCCCCHHHHHHHHHHHH----HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 6022367786446995899998765766----323567999996199999999999999998864798829999656989
Q ss_pred HHH
Q ss_conf 999
Q gi|254780278|r 163 RSL 165 (212)
Q Consensus 163 r~l 165 (212)
|++
T Consensus 153 r~l 155 (155)
T smart00855 153 RAL 155 (155)
T ss_pred HHC
T ss_conf 559
No 14
>pfam00300 PGAM Phosphoglycerate mutase family. Y019_MYCTU and YK23_YEAST are not included in the Prosite entry. However these sequences are significantly similar and contain identical active site residues.
Probab=100.00 E-value=1.5e-38 Score=248.42 Aligned_cols=155 Identities=35% Similarity=0.610 Sum_probs=141.1
Q ss_pred EEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 89999567611102684204757555989899999999998751888427742332243100011221001332122222
Q gi|254780278|r 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYD 83 (212)
Q Consensus 4 ~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~ 83 (212)
+|||||||||+||..++++|+.|++||+.|++||+.+|++|+ +..++.|||||++||+|||+++++..+ +++.++
T Consensus 1 ~i~lvRHg~~~~n~~~~~~g~~d~~Lt~~G~~QA~~~~~~l~--~~~~~~i~~Sp~~Ra~qTa~~i~~~~~---~~~~~~ 75 (155)
T pfam00300 1 RLYLVRHGETEWNVEGRLQGDTDSPLTEEGREQARALGKRLK--GIPFDRIYSSPLLRAIQTAEILAEALG---LPIIVD 75 (155)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CCCCCEEEECCCHHHHHHHHHHHHHCC---CCCCCC
T ss_conf 989972898861326575499998769899999999999964--899998997976689999999987524---443454
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHH
Q ss_conf 10144434310111235688621101200102333321123112356553101001210000023324115646806999
Q gi|254780278|r 84 DALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLR 163 (212)
Q Consensus 84 ~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir 163 (212)
+.|+|+++|.++|++.+++...|+.....++.....+.+|+|||+.++..|+..++.+++. ..++++|+|||||++|+
T Consensus 76 ~~l~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~--~~~~~~ilivsHg~~i~ 153 (155)
T pfam00300 76 PRLRERDFGDWEGLTFEEIKAEFPEELRAWLEDPADFRPPGGESLADVYERVEAALEELLA--KHPGGNVLIVSHGGVIR 153 (155)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEECHHHHH
T ss_conf 5523565774579989999988789999998487545899996899999999999999998--78999899885469897
Q ss_pred HH
Q ss_conf 99
Q gi|254780278|r 164 SL 165 (212)
Q Consensus 164 ~l 165 (212)
++
T Consensus 154 ~l 155 (155)
T pfam00300 154 AL 155 (155)
T ss_pred HC
T ss_conf 69
No 15
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=100.00 E-value=3.1e-35 Score=228.79 Aligned_cols=146 Identities=40% Similarity=0.640 Sum_probs=129.9
Q ss_pred EEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 89999567611102684204757555989899999999998751888427742332243100011221001332122222
Q gi|254780278|r 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYD 83 (212)
Q Consensus 4 ~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~ 83 (212)
+|||||||||+||..++++|+.|+|||+.|++||+.++++|++.+..+|.|||||++||+|||+++++.+ ..++++.+
T Consensus 1 ~i~liRHG~t~~n~~~~~~g~~D~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~~Spl~Ra~qTa~~i~~~~--~~~~~~~~ 78 (153)
T cd07067 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEEL--PGLPVEVD 78 (153)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHC--CCCCEEEC
T ss_conf 9999948776523266975889998698899999999988774078789899475399999999999866--89980688
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHH
Q ss_conf 10144434310111235688621101200102333321123112356553101001210000023324115646806999
Q gi|254780278|r 84 DALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLR 163 (212)
Q Consensus 84 ~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir 163 (212)
++|+| +|+..++.+++.. ..+++|+|||||++|+
T Consensus 79 ~~L~E--------------------------------------------~R~~~~l~~l~~~--~~~~~ilvVsHg~~ir 112 (153)
T cd07067 79 PRLRE--------------------------------------------ARVLPALEELIAP--HDGKNVLIVSHGGVLR 112 (153)
T ss_pred CCCCC--------------------------------------------CCHHHHHHHHHHH--CCCCCEEEEECHHHHH
T ss_conf 88780--------------------------------------------3637799999856--6899689995639999
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 9999985899778632317996199999889996
Q gi|254780278|r 164 SLIMVLEKITVDDIPKVTIGTGEAFVYQLGADAS 197 (212)
Q Consensus 164 ~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~ 197 (212)
++++++++.+...+..+.++||++++++++.++.
T Consensus 113 ~l~~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~ 146 (153)
T cd07067 113 ALLAYLLGLSDEDILRLNLPNGSISVLELDENGG 146 (153)
T ss_pred HHHHHHHCCCHHHHHHCCCCCCEEEEEEEECCCC
T ss_conf 9999995959899842617998389999989997
No 16
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=1e-32 Score=213.89 Aligned_cols=185 Identities=21% Similarity=0.210 Sum_probs=149.8
Q ss_pred CCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCHHHHHHC-------
Q ss_conf 8589999567611102684204757555989899999999998751-88842774233224310001122100-------
Q gi|254780278|r 2 NRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQ-GMVFDAAFSSSLKRAQDTCQIILQEI------- 73 (212)
Q Consensus 2 ~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~-~~~~~~i~sSpl~Ra~qTa~~i~~~~------- 73 (212)
.+.|||.||||+++|..||+.| |++||++|++-|+++++++... +..--.+|+|-++||+|||+.+.++.
T Consensus 419 PRsIYLTRHGESe~NL~GRIGG--DS~LSeRG~~YA~AL~~yf~~e~~~~~l~VwtS~~kRtiqTa~~~~ee~i~~~~~~ 496 (664)
T PTZ00322 419 PMNLYLTRAGEYVDLLSGRIGG--NSRLTERGRAYSRALFEYFQKEISTTSFTVMSSCAKRCTETVHYFAEESILQQSTA 496 (664)
T ss_pred CCEEEEECCCCCHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7338885477635432676466--77677407999999999997553355325558878888999998875034434564
Q ss_pred -------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHH-HHHCCHHHHHHHC
Q ss_conf -------13321222221014443431011123568862110120010233332112311235655-3101001210000
Q gi|254780278|r 74 -------NQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTV-ARVLAYYVQFILP 145 (212)
Q Consensus 74 -------~~~~~~~~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~-~Rv~~~~~~~i~~ 145 (212)
.....++...+.|+|++.|..||++++|+.++||+++...-.++|.+++|+|||+.+.. .|..+. |.+
T Consensus 497 ~~~~~~~Pal~~~~~~wk~LneidaGvCegmtyeeI~~~~Pe~fa~rdqDkY~yRyP~GEs~~q~~~~RLEPv----Ime 572 (664)
T PTZ00322 497 SAASSQSPSLNCRVLYFPTLDDINHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPH----IHD 572 (664)
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCHH----HHH
T ss_conf 2112457444672776201266777654441599999878799986542863121799861799998740213----014
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHCCCH-----HHHHCCCCCCCEEEEEEE
Q ss_conf 02332411564680699999999858997-----786323179961999998
Q gi|254780278|r 146 LILQNKSILVVAHGNSLRSLIMVLEKITV-----DDIPKVTIGTGEAFVYQL 192 (212)
Q Consensus 146 ~~~~~~~vliVsHg~~ir~l~~~l~~~~~-----~~~~~~~i~~g~~~i~~~ 192 (212)
....+.+||||+|.+++|+|++|+..... .+..++.||--++.-+++
T Consensus 573 le~~~~~VLVi~HqavlrcL~aYF~~~~~~~~apq~a~~idip~e~v~kir~ 624 (664)
T PTZ00322 573 IQASTTPVLVVSHLHLLQGLYSYFVTDGDNIVAPQNAYKIDIPFEHVIKIRM 624 (664)
T ss_pred HHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCEEECCCHHHEEEEEE
T ss_conf 3424797799985999999999941579976556644354465467578877
No 17
>KOG0234 consensus
Probab=99.97 E-value=5.8e-30 Score=197.57 Aligned_cols=189 Identities=25% Similarity=0.328 Sum_probs=161.8
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 58999956761110268420475755598989999999999875188842774233224310001122100133212222
Q gi|254780278|r 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIY 82 (212)
Q Consensus 3 ~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~ 82 (212)
++|||+||||+++|..+++.| |++|++.|.+-|+.+.+++.++...--.+|||+++||+|||+.+.- . ..+..
T Consensus 240 R~i~l~r~geS~~n~~grigg--ds~ls~~g~~ya~~l~~f~~~~~~~dl~vwts~~~rti~ta~~l~~----~-~~~~~ 312 (438)
T KOG0234 240 RTIYLTRHGESEFNVEGRIGG--DSPLSERGSQYAKSLIKFVEEQSSSDLDVWTSQRKRTIQTAEGLKL----D-YSVEQ 312 (438)
T ss_pred CEEEEEECCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCC----C-HHHHH
T ss_conf 159998637776665555678--6412588899999988877652256750135568887646752586----4-26665
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 21014443431011123568862110120010233332112311235655310100121000002332411564680699
Q gi|254780278|r 83 DDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 83 ~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~i 162 (212)
...|+|++.|..+|++++|+.++||++....-++.+.+++|+|||+.|+..|..+. |++...+.. |+|++|..+|
T Consensus 313 ~~~Ldei~ag~~~g~t~eeI~~~~p~e~~~r~~dky~yry~~gESy~D~v~RlePv----ImElEr~~~-Vlvi~Hqavi 387 (438)
T KOG0234 313 WKALDEIDAGVCEGLTYEEIETNYPEEFALRDKDKYRYRYPGGESYSDLVQRLEPV----IMELERQEN-VLVITHQAVI 387 (438)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCEEECCCCCCHHHHHHHHHHH----HHHHHHCCC-EEEEECHHHH
T ss_conf 76507002665355459999875826552023773000068877878998863147----675340164-7999638999
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 99999985899778632317996199999889996889971
Q gi|254780278|r 163 RSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNI 203 (212)
Q Consensus 163 r~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~~~~~~ 203 (212)
|||++++++.+....+.+.++...+..+++++-+..+....
T Consensus 388 rcll~Yf~~~~~~e~p~l~~plhtv~~l~~~~y~~~~e~~~ 428 (438)
T KOG0234 388 RCLLAYFLNCSPVELPYLTVPLHTVIKLTPDAYGTTVESIR 428 (438)
T ss_pred HHHHHHHHCCCHHHCCCCCCCCEEEEEEEECCCCCEEEEEE
T ss_conf 99999972498766665334450679974224564368862
No 18
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.97 E-value=5.6e-30 Score=197.66 Aligned_cols=144 Identities=35% Similarity=0.542 Sum_probs=121.4
Q ss_pred EEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 89999567611102684204757555989899999999998751888427742332243100011221001332122222
Q gi|254780278|r 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYD 83 (212)
Q Consensus 4 ~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~ 83 (212)
+|||+|||||++|..++++|+.|.|||+.|++||+.+|+.|+.....++.|||||++||+|||+++++.++ ..+++..+
T Consensus 1 ~i~liRHG~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~~~~~~~i~sSp~~R~~~Ta~~~~~~~~-~~~~i~~~ 79 (153)
T cd07040 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGLF-EGLPVEVD 79 (153)
T ss_pred CEEEECCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCC-CCCCEEEC
T ss_conf 98998589872765589628899985978999999999999965999889991777999999999998759-99987974
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHH
Q ss_conf 10144434310111235688621101200102333321123112356553101001210000023324115646806999
Q gi|254780278|r 84 DALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLR 163 (212)
Q Consensus 84 ~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir 163 (212)
+. .|+..++.+++......+++++|||||++|+
T Consensus 80 ~~-----------------------------------------------~r~~~~~~~~~~~~~~~~~~ilivsH~~~i~ 112 (153)
T cd07040 80 PR-----------------------------------------------ARVLNALLELLARHLLDGKNVLIVSHGGTIR 112 (153)
T ss_pred HH-----------------------------------------------HHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 78-----------------------------------------------8899999999998644798399993649999
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 99999858997786323179961999998899
Q gi|254780278|r 164 SLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195 (212)
Q Consensus 164 ~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~ 195 (212)
++++++.+.+...+..+.+++|++.++++..+
T Consensus 113 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (153)
T cd07040 113 ALLAALLGLSDEEILSLNLPNGSILVLELDEC 144 (153)
T ss_pred HHHHHHHCCCHHHHHHCCCCCCEEEEEEEECC
T ss_conf 99999969298996102479985999999899
No 19
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.94 E-value=4.2e-26 Score=174.67 Aligned_cols=172 Identities=23% Similarity=0.260 Sum_probs=126.7
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCCHHHHHHCCCCC
Q ss_conf 5899995676111026842047575---55989899999999998751--888427742332243100011221001332
Q gi|254780278|r 3 RRLVLVRHGQSEWNIKNLFTGLRNP---PLTSIGMSEANEIGKLLAKQ--GMVFDAAFSSSLKRAQDTCQIILQEINQQH 77 (212)
Q Consensus 3 ~~i~liRHGet~~n~~~~~~G~~D~---~Lt~~G~~QA~~~~~~l~~~--~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~ 77 (212)
++|+|||||| ++.+ +..|. -||+.|.+||..+|++|++. +..+..||.|+|.||+|||++|.+.+ +.
T Consensus 104 rhIILVRHGQ--Y~~~----~~~De~~r~LT~lG~~QA~~TGkrL~e~~~~~~v~~I~hS~MtRAqETA~IIsk~l--P~ 175 (296)
T PTZ00122 104 KQIILVRHGQ--YIRS----AKKDEEAKVLTKEGCKQAEETGKKLKQILNEKKVSVIYHSDLIRAKETATIISKYF--PG 175 (296)
T ss_pred EEEEEEECCC--CCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHC--CC
T ss_conf 4589984140--1257----89816664567888999999989999985688568999337508889999999878--99
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHC-CCCCCCCEEEE
Q ss_conf 12222210144434310111235688621101200102333321123112356553101001210000-02332411564
Q gi|254780278|r 78 ITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILP-LILQNKSILVV 156 (212)
Q Consensus 78 ~~~~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~-~~~~~~~vliV 156 (212)
+++..++.|+| |-+.. |++....|+ |...| +..=..|+..+++.-+.. ....+.--+||
T Consensus 176 v~l~~d~lL~E-------G~Pi~------P~Pp~~~wk------p~~~~-~~~D~aRIEaAFrkYFhRp~~~~DsyeiiV 235 (296)
T PTZ00122 176 AKLINDPNLNE-------GTPYA------PDPSPRGSK------FDIGE-IVKDKKRINKAYETYFYKPGGSEDEYQLVI 235 (296)
T ss_pred CCCCCCHHHHC-------CCCCC------CCCCCCCCC------CCHHH-HHCCHHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 82247833304-------99989------999977777------54466-743608899999976137888887379998
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 6806999999998589977863231799619999988999688997
Q gi|254780278|r 157 AHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKN 202 (212)
Q Consensus 157 sHg~~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~~~~~ 202 (212)
+||.|||.++|..+.+|++.|.++.+.||+++.+.+..+|.+.-+.
T Consensus 236 cHaNVIRYfvcRALQlPpeaWLR~sl~h~sITwi~I~p~G~Vslr~ 281 (296)
T PTZ00122 236 CHGNVIRYFLCRALQYPLFAWLRFSSYNCGITWLVLDDEGSVVLRE 281 (296)
T ss_pred EEHHHHHHHHHHHHCCCHHHHEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 4027899999998618806624501378755999984899689998
No 20
>KOG4609 consensus
Probab=99.87 E-value=5.1e-22 Score=150.50 Aligned_cols=171 Identities=24% Similarity=0.375 Sum_probs=122.5
Q ss_pred CCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 85899995676111026842047575559898999999999987518884277423322431000112210013321222
Q gi|254780278|r 2 NRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPI 81 (212)
Q Consensus 2 ~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~ 81 (212)
++.||||||||-. .. |..+ .||++|++||+.+|+.|++.+++||.+..|.|.||.+||.+|++.+. +.+...
T Consensus 94 tRhI~LiRHgeY~--~~----g~~~-hLTelGReQAE~tGkRL~elglk~d~vv~StM~RA~ETadIIlk~l~-d~lk~~ 165 (284)
T KOG4609 94 TRHIFLIRHGEYH--VD----GSLE-HLTELGREQAELTGKRLAELGLKFDKVVASTMVRATETADIILKHLP-DDLKRV 165 (284)
T ss_pred HCEEEEEECCCEE--CC----CCHH-HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEE
T ss_conf 1048999413012--06----8601-13134278888876789873876634122432246788889997579-862131
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHH---CCCCCCCCEEEECC
Q ss_conf 221014443431011123568862110120010233332112311235655310100121000---00233241156468
Q gi|254780278|r 82 YDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFIL---PLILQNKSILVVAH 158 (212)
Q Consensus 82 ~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~---~~~~~~~~vliVsH 158 (212)
.-+.|+| |-++. |++....|+-..--...+| .|+..++...+. ....++.-.+||+|
T Consensus 166 s~~ll~E-------GaP~p------pdPp~k~wrp~~~qy~rdg-------aRIEaafRryfhRA~p~QeedSy~liV~H 225 (284)
T KOG4609 166 SCPLLRE-------GAPYP------PDPPVKHWRPLDPQYYRDG-------ARIEAAFRRYFHRASPSQEEDSYELIVCH 225 (284)
T ss_pred CCCCCCC-------CCCCC------CCCCCCCCCCCCHHHHHCC-------HHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 2642356-------89999------8898555775576764023-------67899999887626833246627999730
Q ss_pred CHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCEEE
Q ss_conf 069999999985899778632317996199999889996889
Q gi|254780278|r 159 GNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVS 200 (212)
Q Consensus 159 g~~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~~~~ 200 (212)
++|||.++|..+..|.+.|.++++++|+++.+.+...|.+.-
T Consensus 226 aNVIRY~icRALq~PpegWlR~nlnh~SiTWlti~PsG~vsv 267 (284)
T KOG4609 226 ANVIRYFICRALQFPPEGWLRMNLNHCSITWLTISPSGHVSV 267 (284)
T ss_pred CCHHHHHHHHHHCCCCCHHHEECCCCCCEEEEEECCCCCEEE
T ss_conf 322244333441379404312114675157899715786789
No 21
>KOG3734 consensus
Probab=99.80 E-value=2e-19 Score=135.08 Aligned_cols=171 Identities=25% Similarity=0.364 Sum_probs=123.5
Q ss_pred CCCEEEEEECCCCHHHH-----------C-CCC---------------CCC----CCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 98589999567611102-----------6-842---------------047----5755598989999999999875188
Q gi|254780278|r 1 MNRRLVLVRHGQSEWNI-----------K-NLF---------------TGL----RNPPLTSIGMSEANEIGKLLAKQGM 49 (212)
Q Consensus 1 M~~~i~liRHGet~~n~-----------~-~~~---------------~G~----~D~~Lt~~G~~QA~~~~~~l~~~~~ 49 (212)
+.+.|+++||||...|. . ++| .|+ .|+|||+.|..|++.+|+.|.+.++
T Consensus 11 ~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a~~ 90 (272)
T KOG3734 11 VPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNAGI 90 (272)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 78438998762000333422666652177887678776677666555567556756887220147999999999996689
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHCC-CCCCCCCCCCCCCCCCC----CCHHHH-HHHHHHHHCCHHHHHHCCCC-CCCCC
Q ss_conf 8427742332243100011221001-33212222210144434----310111-23568862110120010233-33211
Q gi|254780278|r 50 VFDAAFSSSLKRAQDTCQIILQEIN-QQHITPIYDDALNERDY----GHIAGM-NKDDVCNKWGAEQVHLWRRS-YSVAP 122 (212)
Q Consensus 50 ~~~~i~sSpl~Ra~qTa~~i~~~~~-~~~~~~~~~~~L~E~~~----G~~eG~-~~~e~~~~~~~~~~~~~~~~-~~~~~ 122 (212)
.++++||||..||+|||..+.+.++ ...+.+.++|.|-|+.. |.+..+ +..|+....+. ...-..+ +...+
T Consensus 91 ~i~~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~--VD~~y~P~~~~~~ 168 (272)
T KOG3734 91 AIDVIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFP--VDLNYDPVYKETP 168 (272)
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHCHHCCEEEEECCHHCCHHHHCCCCCCCCCCCHHHHHCCCCC--CCCCCCHHHHHCC
T ss_conf 76614528825678889999986232107268746232352230455888876798897253898--6666652665335
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHH
Q ss_conf 23112356553101001210000023324115646806999999998589977
Q gi|254780278|r 123 PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVD 175 (212)
Q Consensus 123 p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~ 175 (212)
-.+||++++.+|+...+.+++.+ ..+.++|||+||..+.+..+.+.|++..
T Consensus 169 ~~~es~e~~~~R~~~~~k~i~~k--~~~~~lLIV~H~~sv~~~~~~l~~~~~~ 219 (272)
T KOG3734 169 RWGESLEDCNDRIQKVFKAIADK--YPNENLLIVAHGSSVDTCSAQLQGLPVR 219 (272)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEECCCHHHHHHHHHCCCCCE
T ss_conf 63235899999999999999985--6898669996361598999986279855
No 22
>KOG4754 consensus
Probab=99.79 E-value=2.1e-19 Score=134.94 Aligned_cols=182 Identities=21% Similarity=0.274 Sum_probs=125.5
Q ss_pred CEEEEEECCCCHHHHCCC-----C--CCCCCCCCCHHHHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCHHHHHHC
Q ss_conf 589999567611102684-----2--04757555989899999999998751888--42774233224310001122100
Q gi|254780278|r 3 RRLVLVRHGQSEWNIKNL-----F--TGLRNPPLTSIGMSEANEIGKLLAKQGMV--FDAAFSSSLKRAQDTCQIILQEI 73 (212)
Q Consensus 3 ~~i~liRHGet~~n~~~~-----~--~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~--~~~i~sSpl~Ra~qTa~~i~~~~ 73 (212)
|+||||||||-..|..+- | --+.|+.||+.||+|+..+++.+...++. ++.|+||||+||.||+.+.....
T Consensus 15 KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~~f~~~ 94 (248)
T KOG4754 15 KTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVIAFGGY 94 (248)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCE
T ss_conf 17999732520025674322455520100463248777999999861032454577614999466999999999871451
Q ss_pred ----CCCCCCCCCCCCC----CCCCCCCHH---HHHHHHHHHHCCHHHHHHCCCCC--CCCCCCCHHHHHHHHHHCCHHH
Q ss_conf ----1332122222101----444343101---11235688621101200102333--3211231123565531010012
Q gi|254780278|r 74 ----NQQHITPIYDDAL----NERDYGHIA---GMNKDDVCNKWGAEQVHLWRRSY--SVAPPGGESLRDTVARVLAYYV 140 (212)
Q Consensus 74 ----~~~~~~~~~~~~L----~E~~~G~~e---G~~~~e~~~~~~~~~~~~~~~~~--~~~~p~GES~~~~~~Rv~~~~~ 140 (212)
+...+|+.+.|.| +| ..|.|. |.+.++..+-||..-+....... -+.|.=-|+..+...|-..+++
T Consensus 95 ~~e~g~~~~p~~vsp~~i~~~rE-~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~re~~~ 173 (248)
T KOG4754 95 LAEDGEDPAPVKVSPPFIAVCRE-TLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSREFLE 173 (248)
T ss_pred ECCCCCCCCCEEECCHHHHHHHH-HHCCCCCCCCCHHHHHHHHCCCCCCEEECCCCCHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 11578767763643338888898-70887664422067888636566622212676620067623567888776899999
Q ss_pred HHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHH-C-CCCCCCEEE
Q ss_conf 10000023324115646806999999998589977863-2-317996199
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIP-K-VTIGTGEAF 188 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~~~~-~-~~i~~g~~~ 188 (212)
.+.. ...+-+.||||++.|+.++..+.+--..++- . ....||...
T Consensus 174 ~l~~---r~ek~iavvths~fl~~llk~i~k~cd~dv~~~~~~~~Nce~r 220 (248)
T KOG4754 174 WLAK---RPEKEIAVVTHSGFLRSLLKKIQKDCDPDVKPEILSFSNCEHR 220 (248)
T ss_pred HHHH---CCCCEEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCC
T ss_conf 9972---8543279997017999999985453374424255436777677
No 23
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.77 E-value=3.2e-18 Score=127.97 Aligned_cols=142 Identities=20% Similarity=0.234 Sum_probs=97.8
Q ss_pred EEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 89999567611102684204757555989899999999998751888427742332243100011221001332122222
Q gi|254780278|r 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYD 83 (212)
Q Consensus 4 ~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~ 83 (212)
+|||+|||+++++.. ...|-|||+.|++||+.+|++|++.+..+|.|+|||+.||+|||+++++.++.+ ..+++
T Consensus 2 ~L~l~RHg~A~~~~~----~D~~RpLT~~G~~~a~~~a~~l~~~~~~~d~vl~Sp~~RA~QTa~i~~~~~~~~-~~~~~- 75 (159)
T PRK10848 2 QVFIMRHGDAALDAA----SDSVRPLTTCGCDESRLMANWLKGQKVDIERVLVSPFLRAEQTLEVVGDCLNLP-ASAEV- 75 (159)
T ss_pred EEEEEECCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCC-CCCEE-
T ss_conf 799997875478898----944589898899999999999996599988899774288999999999873998-42046-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHH
Q ss_conf 10144434310111235688621101200102333321123112356553101001210000023324115646806999
Q gi|254780278|r 84 DALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLR 163 (212)
Q Consensus 84 ~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir 163 (212)
+.++ .|+|.. ..+ ..++..+ .+ ...++|+||+|.-.+.
T Consensus 76 --~~~L--------------------------------~P~~~~-~~v----~~~l~~l-~~--~~~~~vllVGH~P~ls 113 (159)
T PRK10848 76 --LPEL--------------------------------TPCGDV-GLV----SAYLQAL-AN--EGVASVLVISHLPLVG 113 (159)
T ss_pred --CCCC--------------------------------CCCCCH-HHH----HHHHHHH-HH--CCCCEEEEEECCCCHH
T ss_conf --2566--------------------------------889998-999----9999987-42--5776389980587699
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 9999985899778632317996199999889996
Q gi|254780278|r 164 SLIMVLEKITVDDIPKVTIGTGEAFVYQLGADAS 197 (212)
Q Consensus 164 ~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~ 197 (212)
.+++.+.+.... ..+++|++..++++.++.
T Consensus 114 ~lv~~L~~g~~~----~~f~ta~ia~i~~d~~g~ 143 (159)
T PRK10848 114 YLVAELCPGETP----PMFTTSAIACVTLDESGK 143 (159)
T ss_pred HHHHHHHCCCCC----CCCCCEEEEEEEECCCCC
T ss_conf 999998089876----762871489999758997
No 24
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.73 E-value=4.3e-17 Score=121.31 Aligned_cols=142 Identities=27% Similarity=0.343 Sum_probs=100.2
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 58999956761110268420475755598989999999999875188842774233224310001122100133212222
Q gi|254780278|r 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIY 82 (212)
Q Consensus 3 ~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~ 82 (212)
.+|||+|||+++|...+. ...|-|||+.|+++|..+|++|+..++.+|.|+|||..||+|||+++++.++ ... .+
T Consensus 2 ~~L~LmRHgkA~~~~~~~--~D~dR~Lt~~G~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v~~~~~-~~~-~~- 76 (163)
T COG2062 2 MRLYLMRHGKAEWAAPGI--ADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLG-EKK-VE- 76 (163)
T ss_pred CEEEEEECCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHC-CCC-CE-
T ss_conf 247876223335568888--7746768888899999999999866999887994705889999999998608-565-34-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 21014443431011123568862110120010233332112311235655310100121000002332411564680699
Q gi|254780278|r 83 DDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 83 ~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~i 162 (212)
.+.|+-| +|.+ ..+ ...++. ......++++|+|.-.+
T Consensus 77 --~~~~l~p--------------------------------~~d~-~~~----l~~l~~----~~d~v~~vllVgH~P~l 113 (163)
T COG2062 77 --VFEELLP--------------------------------NGDP-GTV----LDYLEA----LGDGVGSVLLVGHNPLL 113 (163)
T ss_pred --ECCCCCC--------------------------------CCCH-HHH----HHHHHH----HCCCCCEEEEECCCCCH
T ss_conf --6136588--------------------------------9998-999----999997----31347659997888569
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 999999858997786323179961999998899
Q gi|254780278|r 163 RSLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195 (212)
Q Consensus 163 r~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~ 195 (212)
-.+...+.+. .-....++++++-+++++..
T Consensus 114 ~~l~~~L~~~---~~~~~~fptsgia~l~~~~~ 143 (163)
T COG2062 114 EELALLLAGG---ARLPVKFPTSGIAVLEFDGK 143 (163)
T ss_pred HHHHHHHCCC---CCCCCCCCCCCEEEEEECCC
T ss_conf 9999987665---43566777642799996564
No 25
>TIGR00249 sixA phosphohistidine phosphatase SixA; InterPro: IPR004449 Phosphohistidine phosphatase SixA (3.1.3 from EC) from Escherichia coli exhibits phosphatase activity towards the HPT domain of the ArcB sensor involved in the multistep his-asp phosphorelay.; GO: 0008969 phosphohistidine phosphatase activity.
Probab=99.57 E-value=8.8e-15 Score=107.58 Aligned_cols=148 Identities=24% Similarity=0.306 Sum_probs=95.2
Q ss_pred EEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-----CCCEEEEECCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 899995676111026842047575559898999999999987518-----884277423322431000112210013321
Q gi|254780278|r 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQG-----MVFDAAFSSSLKRAQDTCQIILQEINQQHI 78 (212)
Q Consensus 4 ~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~-----~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~ 78 (212)
+|||+|||+..-....+- ..+-+||..|.+|++..|++|+..+ +.+|+||+||+.||.||++++.+.++.+ +
T Consensus 2 ~lylmrHG~A~~~~~di~--D~~R~Lt~~G~~~~~~~A~~L~~~~stlviv~~dril~SP~~RA~qT~~~v~~~~~le-L 78 (169)
T TIGR00249 2 ELYLMRHGKAKLKAADIS--DKERQLTKEGVDEAERVAQWLKKAGSTLVIVELDRILVSPLVRAEQTAEIVADALDLE-L 78 (169)
T ss_pred EEEEEECCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCC-C
T ss_conf 146640785533267987--9876665001068889999998628758898776453087441789999999870874-6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECC
Q ss_conf 22222101444343101112356886211012001023333211231123565531010012100000233241156468
Q gi|254780278|r 79 TPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAH 158 (212)
Q Consensus 79 ~~~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsH 158 (212)
+.. +-.|+|++.- .|+-.-+...++.+ .....+.|+||+|
T Consensus 79 ~~~---------~e~~~~L~P~----------------------------~di~~G~~~~le~l---~~~gv~sv~lvgH 118 (169)
T TIGR00249 79 ESE---------AEVLEGLTPL----------------------------GDIGLGVADYLEKL---KEEGVKSVLLVGH 118 (169)
T ss_pred CCH---------HHCCCCCCCC----------------------------CCCHHHHHHHHHHH---HCCCCEEEEEECC
T ss_conf 311---------1003688873----------------------------31102089999875---2068468998506
Q ss_pred CHHHHHHHHHHHCC-CHH-HHHCCCCCCCEEEEEE--ECCCC
Q ss_conf 06999999998589-977-8632317996199999--88999
Q gi|254780278|r 159 GNSLRSLIMVLEKI-TVD-DIPKVTIGTGEAFVYQ--LGADA 196 (212)
Q Consensus 159 g~~ir~l~~~l~~~-~~~-~~~~~~i~~g~~~i~~--~~~~~ 196 (212)
---+.-+..+|... +++ +.. .+..|.+..+. .+.+.
T Consensus 119 lP~l~~l~~~L~~g~~P~~~~~--~f~~g~i~~~~Ps~d~~~ 158 (169)
T TIGR00249 119 LPLLGELAAYLLSGRNPDLDLI--VFTAGAIALLLPSWDERK 158 (169)
T ss_pred CCHHHHHHHHHCCCCCCCCCCE--EEECCEEEEEECCCCCCC
T ss_conf 3028999998438989886631--330452578512555888
No 26
>PRK06193 hypothetical protein; Provisional
Probab=99.49 E-value=2.5e-13 Score=99.01 Aligned_cols=142 Identities=18% Similarity=0.236 Sum_probs=88.1
Q ss_pred EEEEEECCCCH-HHHC--C-CCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 89999567611-1026--8-420-47575559898999999999987518884277423322431000112210013321
Q gi|254780278|r 4 RLVLVRHGQSE-WNIK--N-LFT-GLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHI 78 (212)
Q Consensus 4 ~i~liRHGet~-~n~~--~-~~~-G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~ 78 (212)
.++++||+.|+ ...+ + .+. -.+--.||+.|++||+.+|+.++..+++++.|||||.-||++||++. +|.
T Consensus 49 ~vl~~RHa~a~pg~gDp~~f~l~dCsTQRnLs~~Gr~qA~~iG~~~~~~~I~i~~V~SS~wCRc~eTA~la---fg~--- 122 (211)
T PRK06193 49 YVIYFRHAATDKDYADQATPELDDCSTQRQLSAEGRQQAKAIGEAFRALDIPIGKVISSEYCRAWETAQLA---FGR--- 122 (211)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHH---HCC---
T ss_conf 89999767778999998888843022447878899999999999999859982708775647259999998---377---
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECC
Q ss_conf 22222101444343101112356886211012001023333211231123565531010012100000233241156468
Q gi|254780278|r 79 TPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAH 158 (212)
Q Consensus 79 ~~~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsH 158 (212)
++..+.|+=..++.. . -+.......++... +...-..+.++++|+|
T Consensus 123 -~~~~~~Ln~~~~~~~--------------------------~---~~~~~~~~~~l~~l----l~~~p~~G~N~VlVtH 168 (211)
T PRK06193 123 -AEKNDALNFPPSEDY--------------------------T---PSQVEAMKANLLPL----LTTPPAPGTNTVLVGH 168 (211)
T ss_pred -CCCCCCCCCCCCCCC--------------------------C---HHHHHHHHHHHHHH----HHCCCCCCCEEEEEEC
T ss_conf -754502156765556--------------------------8---87899999999998----6058989974899968
Q ss_pred CHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf 06999999998589977863231799619999988999
Q gi|254780278|r 159 GNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADA 196 (212)
Q Consensus 159 g~~ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~ 196 (212)
...|.++.+ + ..++.|.+++++-..++
T Consensus 169 qvni~alTG----i-------~P~~eG~~vV~~P~g~g 195 (211)
T PRK06193 169 DDNFEAATG----I-------YPVPEGIAYVFEPDGGQ 195 (211)
T ss_pred CCCHHHHHC----C-------CCCCCCEEEEEEECCCC
T ss_conf 751877728----7-------77888729999547999
No 27
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=97.17 E-value=0.00043 Score=44.21 Aligned_cols=59 Identities=29% Similarity=0.307 Sum_probs=45.1
Q ss_pred EEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--------C--EEEEECCCCCCCCCCHHHHHHCC
Q ss_conf 9999567611102684204757555989899999999998751888--------4--27742332243100011221001
Q gi|254780278|r 5 LVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMV--------F--DAAFSSSLKRAQDTCQIILQEIN 74 (212)
Q Consensus 5 i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~--------~--~~i~sSpl~Ra~qTa~~i~~~~~ 74 (212)
..+.|||.-. .| .||..|.+|+..+|++|++.-.. . -.++||...||++||+.++.++=
T Consensus 6 ~vi~RHG~R~-------PG----qLT~~G~~q~~~lG~~lR~rY~~~~~~~~~~~~~v~~rST~~~Rt~~Sa~~~l~Glf 74 (242)
T cd07061 6 QVLSRHGDRY-------PG----ELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLF 74 (242)
T ss_pred EEEEECCCCC-------CH----HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 9996479999-------52----133999999999999999987775667578876489997896299999999999858
No 28
>pfam00328 Acid_phosphat_A Histidine acid phosphatase.
Probab=96.98 E-value=0.001 Score=41.96 Aligned_cols=47 Identities=26% Similarity=0.200 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHHHCC-------CCC--EEEEECCCCCCCCCCHHHHHHCC
Q ss_conf 559898999999999987518-------884--27742332243100011221001
Q gi|254780278|r 28 PLTSIGMSEANEIGKLLAKQG-------MVF--DAAFSSSLKRAQDTCQIILQEIN 74 (212)
Q Consensus 28 ~Lt~~G~~QA~~~~~~l~~~~-------~~~--~~i~sSpl~Ra~qTa~~i~~~~~ 74 (212)
.||+.|.+|...+|+.|++.- ... -.++||...||++||+.++.++-
T Consensus 55 ~LT~~G~~q~~~lG~~lr~~Y~~ll~~~~~~~~i~~rSt~~~Rti~Sa~a~l~Gl~ 110 (330)
T pfam00328 55 QLTPEGRQQAFELGRYLRQRYGGLLPDGYPPSEVYIRSSDSNRTLASAQAFLAGLF 110 (330)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 22499999999999999999887576767856279997996199999999999708
No 29
>KOG3720 consensus
Probab=96.49 E-value=0.0047 Score=38.06 Aligned_cols=67 Identities=28% Similarity=0.463 Sum_probs=45.9
Q ss_pred EEEEECCC-CH----HHHCCC----C--CCCCCCCCCHHHHHHHHHHHHHHHH---CCCCC-------E--EEEECCCCC
Q ss_conf 99995676-11----102684----2--0475755598989999999999875---18884-------2--774233224
Q gi|254780278|r 5 LVLVRHGQ-SE----WNIKNL----F--TGLRNPPLTSIGMSEANEIGKLLAK---QGMVF-------D--AAFSSSLKR 61 (212)
Q Consensus 5 i~liRHGe-t~----~n~~~~----~--~G~~D~~Lt~~G~~QA~~~~~~l~~---~~~~~-------~--~i~sSpl~R 61 (212)
-.+-|||. |- +..+-. | .||. .||+.|.+|+..+|++|++ ...+| + .|.||+.-|
T Consensus 38 ~~i~RHGdRaP~~~~yp~dp~~~~~~~~~G~G--qLT~~G~~Q~~~LG~~LR~rYvr~~~fL~~~y~~~ev~iRStd~nR 115 (411)
T KOG3720 38 QVIFRHGDRAPVDTPYPLDPFKEEDFWPRGWG--QLTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKEVYIRSTDVNR 115 (411)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEECCCCHH
T ss_conf 99850687886546788985544345887713--2027899999999999998761223558754484246886368228
Q ss_pred CCCCCHHHHHHC
Q ss_conf 310001122100
Q gi|254780278|r 62 AQDTCQIILQEI 73 (212)
Q Consensus 62 a~qTa~~i~~~~ 73 (212)
|+.||+.++..+
T Consensus 116 tl~SAqs~laGl 127 (411)
T KOG3720 116 TLMSAQSVLAGL 127 (411)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999741
No 30
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=96.27 E-value=0.0096 Score=36.25 Aligned_cols=71 Identities=28% Similarity=0.322 Sum_probs=45.9
Q ss_pred CEEEEEECCC---CHHH--HCCCCCC-----CC--CCCCCHHHHHHHHHHHHH----HHHCCCCCE---------EEEEC
Q ss_conf 5899995676---1110--2684204-----75--755598989999999999----875188842---------77423
Q gi|254780278|r 3 RRLVLVRHGQ---SEWN--IKNLFTG-----LR--NPPLTSIGMSEANEIGKL----LAKQGMVFD---------AAFSS 57 (212)
Q Consensus 3 ~~i~liRHGe---t~~n--~~~~~~G-----~~--D~~Lt~~G~~QA~~~~~~----l~~~~~~~~---------~i~sS 57 (212)
+-++|.|||= ++.| .-..+++ |. +-.||+.|..-....|++ |.+.+.-.. .+|.+
T Consensus 33 kVVilSRHGvRaP~~~~~~~L~~~T~~~WP~W~v~~G~LT~rG~~l~~~mG~y~r~~l~~~gLl~~~~CP~~~~V~v~An 112 (413)
T PRK10173 33 QVLMMSRHNLRAPLANNGSVLEQSTPNKWPAWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGLVKSGECPPPDTVYAYAN 112 (413)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECC
T ss_conf 99999726778998888788864287889989899756457789999999999999998749877789959770899728
Q ss_pred CCCCCCCCCHHHHHHC
Q ss_conf 3224310001122100
Q gi|254780278|r 58 SLKRAQDTCQIILQEI 73 (212)
Q Consensus 58 pl~Ra~qTa~~i~~~~ 73 (212)
+++|++.||+.+++.+
T Consensus 113 s~QRT~aTaqaf~~G~ 128 (413)
T PRK10173 113 SLQRTVATAQFFITGA 128 (413)
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 4186799999998424
No 31
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=95.44 E-value=0.038 Score=32.71 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=45.7
Q ss_pred CEEEEEECCC---CHHHH-CCCCCC--CC--C---CCCCHHHHHHHHHHHHHHH----HCCCCC---------EEEEECC
Q ss_conf 5899995676---11102-684204--75--7---5559898999999999987----518884---------2774233
Q gi|254780278|r 3 RRLVLVRHGQ---SEWNI-KNLFTG--LR--N---PPLTSIGMSEANEIGKLLA----KQGMVF---------DAAFSSS 58 (212)
Q Consensus 3 ~~i~liRHGe---t~~n~-~~~~~G--~~--D---~~Lt~~G~~QA~~~~~~l~----~~~~~~---------~~i~sSp 58 (212)
+=++|-|||= |..+. -..++. |. | -.||+.|..-...+|+++. ..+.-. -.+|.++
T Consensus 32 kVVilSRHGvRaPt~~~~~L~~~T~~~WP~W~v~~G~LT~rG~~l~~~mG~y~r~~l~~~gLL~~~~CP~~~~V~v~Ans 111 (432)
T PRK10172 32 SVVIVSRHGVRAPTKATQLMQDVTPDAWPQWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQPGQVAIIADV 111 (432)
T ss_pred EEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC
T ss_conf 99999735877898872346641888799898998655566899999999999999997488766789596828999486
Q ss_pred CCCCCCCCHHHHHHC
Q ss_conf 224310001122100
Q gi|254780278|r 59 LKRAQDTCQIILQEI 73 (212)
Q Consensus 59 l~Ra~qTa~~i~~~~ 73 (212)
++|++.||+.+++.+
T Consensus 112 ~QRT~aTaqaf~~Gl 126 (432)
T PRK10172 112 DERTRKTGEAFLAGL 126 (432)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 077799999998436
No 32
>KOG1057 consensus
Probab=93.73 E-value=0.06 Score=31.54 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCC---------------CEEEEECCCCCCCCCCHHHHHHC
Q ss_conf 55989899999999998751888---------------42774233224310001122100
Q gi|254780278|r 28 PLTSIGMSEANEIGKLLAKQGMV---------------FDAAFSSSLKRAQDTCQIILQEI 73 (212)
Q Consensus 28 ~Lt~~G~~QA~~~~~~l~~~~~~---------------~~~i~sSpl~Ra~qTa~~i~~~~ 73 (212)
.||..|+.||.++|+++...-.. --.||+|.-.|-+.||+.+++++
T Consensus 511 elT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgL 571 (1018)
T KOG1057 511 ELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGL 571 (1018)
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 7262357659999999974188877742010014453241268547506788899999899
No 33
>KOG1382 consensus
Probab=81.78 E-value=1.6 Score=23.11 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCCCCCCCCHHHHHHCCC
Q ss_conf 555989899999999998751-----8884277423322431000112210013
Q gi|254780278|r 27 PPLTSIGMSEANEIGKLLAKQ-----GMVFDAAFSSSLKRAQDTCQIILQEINQ 75 (212)
Q Consensus 27 ~~Lt~~G~~QA~~~~~~l~~~-----~~~~~~i~sSpl~Ra~qTa~~i~~~~~~ 75 (212)
..|...|+..|.++++.+-+. +...-.|+++-.+|+.+||+.++.++..
T Consensus 131 ~~l~~~g~~~a~R~~r~f~~~y~~~~n~~~y~i~tt~~~R~~dSA~~F~~GLfg 184 (467)
T KOG1382 131 DQLEDEGRMLAKRLARRFPALYYELENPTVYNINTTASQRVVDSAQAFAYGLFG 184 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 665566888999999999999986348866875201017778999999965213
No 34
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)). The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=62.34 E-value=1.8 Score=22.84 Aligned_cols=142 Identities=17% Similarity=0.230 Sum_probs=80.5
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCHH-HHH------HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHC
Q ss_conf 998751888427742332243100011-221------0013321222221014443431011123568862110120010
Q gi|254780278|r 42 KLLAKQGMVFDAAFSSSLKRAQDTCQI-ILQ------EINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLW 114 (212)
Q Consensus 42 ~~l~~~~~~~~~i~sSpl~Ra~qTa~~-i~~------~~~~~~~~~~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~ 114 (212)
+.|++.|.. ....||-.++..+..- |-+ .-......+.+|..+.|++- +++
T Consensus 20 ~~l~~~G~~--V~~v~~g~~~g~~v~~aihdfeGdqty~~~~g~~v~vd~~~~~v~~----------------~~Y---- 77 (189)
T TIGR01382 20 KRLKEAGHE--VTVVSIGKEAGTIVGDAIHDFEGDQTYTEKHGYSVTVDATIDDVDP----------------EDY---- 77 (189)
T ss_pred HHHHHCCCE--EEEEEECCEECCEEECEEECCCCCCCCCCCCCEEEEEECCEECCCH----------------HHC----
T ss_conf 999856988--9898316500232201101156763213478816887441214785----------------256----
Q ss_pred CCCCCCCCCCCHH-HHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHC--C--CCCCCEEEE
Q ss_conf 2333321123112-3565531010012100000233241156468069999999985899778632--3--179961999
Q gi|254780278|r 115 RRSYSVAPPGGES-LRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPK--V--TIGTGEAFV 189 (212)
Q Consensus 115 ~~~~~~~~p~GES-~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~~~~~--~--~i~~g~~~i 189 (212)
.-.-.|||-+ ..-++ ...-+.+++.++..+|+.|..++||..+=+-..-+-|........ . .+.|++.-.
T Consensus 78 ---Dal~ipGG~a~~e~LR--~d~~~~~lvR~f~e~gK~vaaIChgp~lLi~A~VlrGkk~T~y~aPei~~d~~nAGaey 152 (189)
T TIGR01382 78 ---DALVIPGGRASPEYLR--LDEKVIRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTAYPAPEIIDDVKNAGAEY 152 (189)
T ss_pred ---CEEEEECCCCCCCCCC--CCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCEECCCEEEECCCCCCHHHHHHCCEEE
T ss_conf ---4789717735600014--87689999999841788199984530000025510375375339986215565286116
Q ss_pred EEECCCCCEEEEE---ECCCCCCCC
Q ss_conf 9988999688997---137822015
Q gi|254780278|r 190 YQLGADASIVSKN---IMRGQSPAE 211 (212)
Q Consensus 190 ~~~~~~~~~~~~~---~~~~~~p~~ 211 (212)
.+.. +..++..| ++-...|++
T Consensus 153 ~D~~-~~~V~d~nGWt~itar~p~~ 176 (189)
T TIGR01382 153 VDIR-EVVVVDANGWTLITARVPAD 176 (189)
T ss_pred EECC-CCEEECCCCEEEEECCCCHH
T ss_conf 7878-74145488517994288112
No 35
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=53.34 E-value=5.3 Score=20.02 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=13.3
Q ss_pred HHHHCCCCCCCCEEEECCCH
Q ss_conf 10000023324115646806
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~ 160 (212)
+++.+...+|.+|++|+|.-
T Consensus 180 ~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 180 DLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred HHHHHHHHCCCEEEEEECCC
T ss_conf 99999987898899995881
No 36
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase; InterPro: IPR011963 Siderophores are low molecular weight iron-chelating compounds synthesised by many bacteria to aid in the aquisition of this vital trace element . Proteins in this entry are adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores. These proteins belong to the AMP-binding family and are mostly thought to activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. One of these proteins, however, is believed to differ in function, activating salicylate rather than DHB. The crystal structure of 2,3-dihydroxybenzoate-AMP ligase (P40871 from SWISSPROT) from Bacillus subtilis has been examined . This protein is composed of a large N-terminal domain (~420 aa) and a more compact C-terminal domain (~110 aa), with an overall "hammer-and-anvil" fold similar to that of firefly luciferase . The active site is located in a deep compartment located at the interface of the domains, with a p-loop thought to be involved in catalysis located at the entrance to the cavity. Relatively little conformational change was observed during catalysis.; GO: 0008668 (23-dihydroxybenzoyl)adenylate synthase activity, 0019290 siderophore biosynthetic process.
Probab=51.33 E-value=15 Score=17.29 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=14.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 757555989899999999998
Q gi|254780278|r 24 LRNPPLTSIGMSEANEIGKLL 44 (212)
Q Consensus 24 ~~D~~Lt~~G~~QA~~~~~~l 44 (212)
|.|-|||+.=.+||+..++.+
T Consensus 20 W~dkpLtD~L~~~A~~~Pdai 40 (534)
T TIGR02275 20 WQDKPLTDILEKQAARRPDAI 40 (534)
T ss_pred CCCCCHHHHHHHHHHCCCCCE
T ss_conf 588608899999983289943
No 37
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=48.12 E-value=9.4 Score=18.53 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 2112311235655310100121000002332411564680699999999858997786323
Q gi|254780278|r 120 VAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180 (212)
Q Consensus 120 ~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~~~~~~ 180 (212)
.-.|||-.... -|..+-+.+++.+....++.|..|+||..+-+-...+.|.....++.+
T Consensus 80 i~iPGG~g~~~--l~~d~~~~~li~~~~~~gK~iaaIChgp~~L~~agll~Gk~~T~~~~~ 138 (180)
T cd03169 80 LVIPGGRAPEY--LRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPAC 138 (180)
T ss_pred EEECCCCCHHH--HHCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEECCCH
T ss_conf 99899822877--711979999999999819969977816899987696589878826856
No 38
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=46.28 E-value=23 Score=16.23 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 1123565531010012100000233241156468069999999
Q gi|254780278|r 125 GESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIM 167 (212)
Q Consensus 125 GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~l~~ 167 (212)
--|+.|+.+|+..+ ++|.+....++.|+||-|...+-=.++
T Consensus 240 psSyLDi~qRl~~a--r~Irel~~~~k~ViVVEHDLavLD~ls 280 (591)
T COG1245 240 PSSYLDIRQRLNAA--RVIRELAEDGKYVIVVEHDLAVLDYLS 280 (591)
T ss_pred CCCCCCHHHHHHHH--HHHHHHHCCCCEEEEEECHHHHHHHHH
T ss_conf 84110599998799--999998626986999933478998765
No 39
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=44.53 E-value=18 Score=16.78 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=37.7
Q ss_pred CCCCCHHHHHH----HHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 75559898999----99999998751888427742332243100011221001332122222101444
Q gi|254780278|r 26 NPPLTSIGMSE----ANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDDALNER 89 (212)
Q Consensus 26 D~~Lt~~G~~Q----A~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~~~L~E~ 89 (212)
|-+-|..++.+ ....++.|.+.+.-.-..+.||+...+|-|.-+... ...+.+.++--|.++
T Consensus 69 dLgFs~edR~eniRRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~vc 134 (197)
T COG0529 69 DLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGE--GEFIEVYVDTPLEVC 134 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHHHHCC--CCEEEEEECCCHHHH
T ss_conf 889786789999999999999998789089997517309999999997276--862899957989999
No 40
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=43.97 E-value=25 Score=16.03 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=9.1
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 55598989999999999
Q gi|254780278|r 27 PPLTSIGMSEANEIGKL 43 (212)
Q Consensus 27 ~~Lt~~G~~QA~~~~~~ 43 (212)
+++|+...+.|+.-+..
T Consensus 165 vDIS~~AL~vAk~Na~~ 181 (503)
T PRK01544 165 TDISLDAIEVAKSNAIK 181 (503)
T ss_pred EECCHHHHHHHHHHHHH
T ss_conf 98989999999999998
No 41
>PRK10481 hypothetical protein; Provisional
Probab=43.82 E-value=10 Score=18.24 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=8.5
Q ss_pred CCCEEEEEECCCC
Q ss_conf 9858999956761
Q gi|254780278|r 1 MNRRLVLVRHGQS 13 (212)
Q Consensus 1 M~~~i~liRHGet 13 (212)
|++||=+|-=||+
T Consensus 1 m~~~ig~vTIGQs 13 (224)
T PRK10481 1 MSASLAILTIGQS 13 (224)
T ss_pred CCCEEEEEEECCC
T ss_conf 9616999995479
No 42
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=42.31 E-value=6.6 Score=19.44 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=13.9
Q ss_pred HHHCCCCCCCCEEEECCCHHH
Q ss_conf 000002332411564680699
Q gi|254780278|r 142 FILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 142 ~i~~~~~~~~~vliVsHg~~i 162 (212)
++.+...++.+|++|||-.-.
T Consensus 174 ~i~~l~~~g~tii~vtHdl~~ 194 (213)
T cd03235 174 LLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred HHHHHHHCCCEEEEEECCHHH
T ss_conf 999999689999999079899
No 43
>TIGR01751 crot-CoA-red crotonyl-CoA reductase; InterPro: IPR010085 Crotonyl-CoA reductase is responsible for the conversion of crotonyl-CoA to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate , . In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae ..
Probab=41.97 E-value=7.2 Score=19.22 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEC
Q ss_conf 4434310111235688621101200102333321123112356553101001210000023324115646
Q gi|254780278|r 88 ERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVA 157 (212)
Q Consensus 88 E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVs 157 (212)
|.+||.|.-...=+-.+=+|.+....|++..-+...++=-|+++..+-- ...++|++|||=.
T Consensus 144 ETn~GsfA~~alV~~~Ql~PKPkhLtWEEaAc~~L~~~TAYRqL~g~~p--------~~~KpGD~VLIWG 205 (409)
T TIGR01751 144 ETNYGSFAEFALVKDYQLLPKPKHLTWEEAACLLLTGATAYRQLVGWKP--------AEVKPGDNVLIWG 205 (409)
T ss_pred ECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--------CCCCCCCCEEEEC
T ss_conf 6788541234344023687876788869998521013445544206877--------7668888379842
No 44
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=41.33 E-value=9.8 Score=18.42 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=15.0
Q ss_pred HHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 21000002332411564680699
Q gi|254780278|r 140 VQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 140 ~~~i~~~~~~~~~vliVsHg~~i 162 (212)
.+++.+...++.+|+++||-.-.
T Consensus 166 ~~ll~~l~~~g~tvi~itHdl~~ 188 (205)
T cd03226 166 GELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred HHHHHHHHHCCCEEEEEECCHHH
T ss_conf 99999999799999998039899
No 45
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=40.23 E-value=11 Score=18.12 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=20.2
Q ss_pred HHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHHH
Q ss_conf 5655310100121000002332411564680699999
Q gi|254780278|r 129 RDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSL 165 (212)
Q Consensus 129 ~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~l 165 (212)
.|...|. .+.++|.+...++.+|++|||-...-.-
T Consensus 170 LD~~~~~--~v~~li~~L~~~G~Tvi~vtHDl~~~~~ 204 (255)
T cd03236 170 LDIKQRL--NAARLIRELAEDDNYVLVVEHDLAVLDY 204 (255)
T ss_pred CCHHHHH--HHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 8999999--9999999999789999999078999998
No 46
>pfam00762 Ferrochelatase Ferrochelatase.
Probab=40.14 E-value=29 Score=15.65 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCE----EEEECCCC
Q ss_conf 755598989999999999875188842----77423322
Q gi|254780278|r 26 NPPLTSIGMSEANEIGKLLAKQGMVFD----AAFSSSLK 60 (212)
Q Consensus 26 D~~Lt~~G~~QA~~~~~~l~~~~~~~~----~i~sSpl~ 60 (212)
-+||...-.+|++.+.+.|...+.++. .-|..|..
T Consensus 62 ~SPl~~~t~~q~~~L~~~l~~~~~~~~V~~amry~~P~i 100 (312)
T pfam00762 62 GSPLNVITRAQAEALQKRLGERGADVKVYLAMRYGPPSI 100 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
T ss_conf 885899999999999999871499953898855689977
No 47
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.56 E-value=12 Score=17.88 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.3
Q ss_pred HHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 0121000002332411564680699
Q gi|254780278|r 138 YYVQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 138 ~~~~~i~~~~~~~~~vliVsHg~~i 162 (212)
.+.+++......+..|+++||..-.
T Consensus 175 ~l~~~l~~~~~~g~tvl~~tHd~~~ 199 (214)
T PRK13543 175 LVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999999998679999999199899
No 48
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=36.71 E-value=16 Score=17.22 Aligned_cols=11 Identities=18% Similarity=0.903 Sum_probs=4.0
Q ss_pred CCHHHHHHHHH
Q ss_conf 31011123568
Q gi|254780278|r 92 GHIAGMNKDDV 102 (212)
Q Consensus 92 G~~eG~~~~e~ 102 (212)
|.++|++.+|+
T Consensus 33 GaLDgls~~eI 43 (221)
T pfam07302 33 GALDGLSREEI 43 (221)
T ss_pred CCCCCCCHHHH
T ss_conf 35579999999
No 49
>COG3933 Transcriptional antiterminator [Transcription]
Probab=35.96 E-value=33 Score=15.26 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=52.9
Q ss_pred CEEEEEECCCCHHH----HCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHC
Q ss_conf 58999956761110----2684204-----75755598989999999999875188842774233224310001122100
Q gi|254780278|r 3 RRLVLVRHGQSEWN----IKNLFTG-----LRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEI 73 (212)
Q Consensus 3 ~~i~liRHGet~~n----~~~~~~G-----~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~ 73 (212)
-+++++-||.|+.. ..++.-| ..|-||+-.=..-++++.+++++....--.+.=++|.--..-+..+.+.+
T Consensus 109 v~vIiiAHG~sTASSmaevanrLL~~~~~~aiDMPLdvsp~~vle~l~e~~k~~~~~~GlllLVDMGSL~~f~~~i~~~~ 188 (470)
T COG3933 109 VKVIIIAHGYSTASSMAEVANRLLGEEIFIAIDMPLDVSPSDVLEKLKEYLKERDYRSGLLLLVDMGSLTSFGSIISEEF 188 (470)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 36999725864078899999998632530134687767889999999999984475674599982530878999999986
Q ss_pred CCCCCCCCCCC
Q ss_conf 13321222221
Q gi|254780278|r 74 NQQHITPIYDD 84 (212)
Q Consensus 74 ~~~~~~~~~~~ 84 (212)
| +|+.+-+
T Consensus 189 ~---ipv~~i~ 196 (470)
T COG3933 189 G---IPVKVIP 196 (470)
T ss_pred C---CCEEEEE
T ss_conf 8---9649970
No 50
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=34.57 E-value=33 Score=15.25 Aligned_cols=36 Identities=3% Similarity=0.016 Sum_probs=21.0
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCC
Q ss_conf 99999875188842774233224310001122100133
Q gi|254780278|r 39 EIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQ 76 (212)
Q Consensus 39 ~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~ 76 (212)
.++++++.. . .+.+..||=..+.+-|+.+++.+|.+
T Consensus 150 ~l~~~i~~~-~-~~~vvVsPD~G~~~ra~~~a~~lg~~ 185 (301)
T PRK07199 150 AIAAWIRAH-V-PKPLLIGPDSESEQWVSAVAGRAGAP 185 (301)
T ss_pred HHHHHHHHH-C-CCCEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 789999851-8-77536788877799999999865998
No 51
>TIGR02935 probable nitrogen fixation protein. Members of this protein family, called DUF269 by pfam03270, are strictly limited to nitrogen-fixing species, although not universal among them. The gene typically is found next to the nifX gene (see TIGRFAMs model TIGR02663).
Probab=33.65 E-value=7.5 Score=19.08 Aligned_cols=89 Identities=18% Similarity=0.290 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCC-C---CCEEEECCCHHHHHH
Q ss_conf 343101112356886211012001023333211231123565531010012100000233-2---411564680699999
Q gi|254780278|r 90 DYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQ-N---KSILVVAHGNSLRSL 165 (212)
Q Consensus 90 ~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~-~---~~vliVsHg~~ir~l 165 (212)
.||.|++++.+++.+.|--...+. +. -|--|+.-.++..|+..|...+-+.-..+ | .+++=.+|-|.-|++
T Consensus 17 tyG~w~~~sDe~lL~pfIvtke~r-r~----ipi~gdpDp~tl~Ri~~Fy~Ava~~IEk~TG~m~~~~~~l~hEGFGr~l 91 (140)
T TIGR02935 17 TYGAWEGKSDAELLAPYIVTKEER-RE----IPIIGDPDPETLWRIELFYNAVALAIEKRTGLMASPMMKLHHEGFGRVL 91 (140)
T ss_pred CCCCCCCCCHHHHHHHHCCCHHHH-CC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEE
T ss_conf 766546798799987661799884-33----8877898989999999999999999999868821246416877752378
Q ss_pred HH--HH--HCCCHHHHHCCCCC
Q ss_conf 99--98--58997786323179
Q gi|254780278|r 166 IM--VL--EKITVDDIPKVTIG 183 (212)
Q Consensus 166 ~~--~l--~~~~~~~~~~~~i~ 183 (212)
+. .| ....+.+..+|-++
T Consensus 92 l~~GrLvvv~k~LRDvhRFGF~ 113 (140)
T TIGR02935 92 LIAGRLVVVNKTMRDVHRFGFD 113 (140)
T ss_pred EEECCEEEEEHHHHHHHHCCCC
T ss_conf 8846188751777787741877
No 52
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.31 E-value=12 Score=17.86 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=15.0
Q ss_pred HHHHHHHCCCCCCCCEEEECCCH
Q ss_conf 01210000023324115646806
Q gi|254780278|r 138 YYVQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 138 ~~~~~i~~~~~~~~~vliVsHg~ 160 (212)
.+.+++.+...++.+|+++||-.
T Consensus 166 ~i~~~i~~~~~~g~til~ssH~l 188 (210)
T cd03269 166 LLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred HHHHHHHHHHHCCCEEEEECCCH
T ss_conf 99999999996898999988848
No 53
>KOG2884 consensus
Probab=32.37 E-value=38 Score=14.90 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCHHHHHHCC
Q ss_conf 8999999999987518--88427742332243100011221001
Q gi|254780278|r 33 GMSEANEIGKLLAKQG--MVFDAAFSSSLKRAQDTCQIILQEIN 74 (212)
Q Consensus 33 G~~QA~~~~~~l~~~~--~~~~~i~sSpl~Ra~qTa~~i~~~~~ 74 (212)
|+++|+.+-++-...+ ..+-++..||..-...-...+++.+.
T Consensus 90 ~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlk 133 (259)
T KOG2884 90 GIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLK 133 (259)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 89999999871038886369999936832233899999999987
No 54
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=32.03 E-value=39 Score=14.87 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 55989899999999998751888427742332243100011221001332122222101444343101112356886211
Q gi|254780278|r 28 PLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWG 107 (212)
Q Consensus 28 ~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~e~~~~~~ 107 (212)
.|+..|=+=|+++|..+......--+.+-..|-=+-.|+++ =|-+.+|.+|-+. ++++...|.
T Consensus 91 ~~N~~gA~lAr~vA~E~~~~~p~kpRfVAGs~GPtnkt~tl---------sPdVe~P~FRnvt--------yD~L~~AY~ 153 (1265)
T TIGR02082 91 DLNFKGAKLARRVADEFTALTPEKPRFVAGSLGPTNKTATL---------SPDVERPEFRNVT--------YDELVDAYK 153 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC---------CCCCCCCCCCCCC--------HHHHHHHHH
T ss_conf 98799999999998776410889865887315775557745---------8888877887578--------798999999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHH-HHCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 01200102333321123112356553-101001210000023324115646806999999998589977863
Q gi|254780278|r 108 AEQVHLWRRSYSVAPPGGESLRDTVA-RVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIP 178 (212)
Q Consensus 108 ~~~~~~~~~~~~~~~p~GES~~~~~~-Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~~~~ 178 (212)
+...-....+.|.-. -|+..|+.+ |+.=|-.+.+ ...++..+=|+.||.+.-..=..|.|...+.+.
T Consensus 154 e~~~gL~dGGvDllL--iET~fDtLnaKAAlfA~~~~--F~~~g~~lPi~iSGti~d~sGr~LsGqt~~Af~ 221 (1265)
T TIGR02082 154 EQIKGLLDGGVDLLL--IETVFDTLNAKAALFAAETV--FEEKGRELPIMISGTIVDTSGRTLSGQTLEAFL 221 (1265)
T ss_pred HHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHH
T ss_conf 999987732603547--74799999999999999999--997289787688602622768720262089999
No 55
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit; InterPro: IPR012719 The TCP-1 protein , (Tailless Complex Polypeptide 1) was first identified in mice where it is especially abundant in testis but present in all cell types. It has since been found and characterised in many other animal species, as well as in yeast, plants and protists. TCP-1 is a highly conserved protein of about 60 kDa (556 to 560 residues) which participates in a hetero-oligomeric 900 kDa double-torus shaped particle with 6 to 8 other different subunits. These subunits, the chaperonin containing TCP-1 (CCT) subunit beta, gamma, delta, epsilon, zeta and eta are evolutionary related to TCP-1 itself , . The CCT is known to act as a molecular chaperone for tubulin, actin and probably some other proteins. The TCP-1 family of proteins are weakly, but significantly , related to the cpn60/groEL chaperonin family (see IPR001844 from INTERPRO). Proteins in this entry consist exclusively of the CCT gamma chain from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=30.74 E-value=24 Score=16.09 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=51.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCH-HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 0475755598989999999999875188842774233224310001-122100133212222210144434310111235
Q gi|254780278|r 22 TGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQ-IILQEINQQHITPIYDDALNERDYGHIAGMNKD 100 (212)
Q Consensus 22 ~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~-~i~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ 100 (212)
.-..|.-+||.|...-.+ +||...+ .|-++|-+.|=. .|++..|.. -+-.-+.|+|-|.|.=-|| .
T Consensus 281 ~~KPD~ViTEKGvSDLAq--HYL~K~n-------i~aiRR~RKtDnnRiaR~~GA~--IVnR~Eel~E~DvGt~cGL--F 347 (527)
T TIGR02344 281 AVKPDLVITEKGVSDLAQ--HYLLKAN-------ISAIRRVRKTDNNRIARACGAT--IVNRPEELRESDVGTGCGL--F 347 (527)
T ss_pred HHCCCEEEECCCCHHHHH--HHHHHCC-------CEEEEECCCCCHHHHHHHHCCE--EECCCCCCEECCCCCCCCE--E
T ss_conf 418988996276026899--9998679-------2288602313014667750871--5256110510444676540--3
Q ss_pred HHHHHCCHHHHHHCC
Q ss_conf 688621101200102
Q gi|254780278|r 101 DVCNKWGAEQVHLWR 115 (212)
Q Consensus 101 e~~~~~~~~~~~~~~ 115 (212)
|+ ++.+++||.+..
T Consensus 348 e~-~kiGDeYf~F~~ 361 (527)
T TIGR02344 348 EV-KKIGDEYFTFLT 361 (527)
T ss_pred EE-EECCCHHHHHHH
T ss_conf 32-102114668852
No 56
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.63 E-value=17 Score=16.95 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHHHCCCCCCCCEEEECCCH
Q ss_conf 1210000023324115646806
Q gi|254780278|r 139 YVQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 139 ~~~~i~~~~~~~~~vliVsHg~ 160 (212)
+.+++.+...++.+|+++||--
T Consensus 165 v~~~i~~~~~~g~tiIi~tH~p 186 (206)
T PRK13539 165 FAELIRAHLAQGGIVIAATHIP 186 (206)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999999995899999993898
No 57
>PRK11637 hypothetical protein; Provisional
Probab=30.10 E-value=17 Score=16.98 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCHH
Q ss_conf 333321123112356553101001210000023324115646806999999998589977
Q gi|254780278|r 116 RSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVD 175 (212)
Q Consensus 116 ~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~l~~~l~~~~~~ 175 (212)
.+.++..|.|.+...+..-...+. ......+++|||-||+-...+++|+-.+...
T Consensus 306 ~GidI~a~~Gt~V~Av~~G~Vv~a-----~~~~gyG~~ViIdHG~g~~TlYah~s~l~v~ 360 (404)
T PRK11637 306 KGMVIGASEGTEVKAIADGRVILA-----DWLQGYGLVVVVEHGKGDMSLYGYNQSALVS 360 (404)
T ss_pred CCEEEECCCCCEEEEECCEEEEEE-----EECCCCCCEEEEECCCCCEEECCCCCCCCCC
T ss_conf 875875699980541017699991-----1408888579998699465715288958889
No 58
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=27.95 E-value=27 Score=15.83 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=12.4
Q ss_pred HHHHHCCCCCCCCEEEECCCH
Q ss_conf 210000023324115646806
Q gi|254780278|r 140 VQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 140 ~~~i~~~~~~~~~vliVsHg~ 160 (212)
+++|.+ .+++=+||||||..
T Consensus 184 EeLi~e-Lk~~YTivIVTHnM 203 (248)
T TIGR00972 184 EELIQE-LKKKYTIVIVTHNM 203 (248)
T ss_pred HHHHHH-HHHCCEEEEEECCH
T ss_conf 999998-76529799881775
No 59
>PRK13542 consensus
Probab=27.15 E-value=22 Score=16.33 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=14.5
Q ss_pred HHHHHHCCCCCCCCEEEECCCH
Q ss_conf 1210000023324115646806
Q gi|254780278|r 139 YVQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 139 ~~~~i~~~~~~~~~vliVsHg~ 160 (212)
+.+++.+...++..++|+||-.
T Consensus 186 l~~~i~~~~~~g~tvIi~tH~l 207 (224)
T PRK13542 186 FHTLLDEHLRRGGMAVVATHQL 207 (224)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999999996899899995887
No 60
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.76 E-value=22 Score=16.33 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=10.9
Q ss_pred CCCCCCEEEECCCH
Q ss_conf 23324115646806
Q gi|254780278|r 147 ILQNKSILVVAHGN 160 (212)
Q Consensus 147 ~~~~~~vliVsHg~ 160 (212)
..++.+|++|||-.
T Consensus 136 ~~~g~TvI~vtHd~ 149 (176)
T cd03238 136 IDLGNTVILIEHNL 149 (176)
T ss_pred HHCCCEEEEEECCH
T ss_conf 98799899994787
No 61
>TIGR01979 sufS cysteine desulfurases, SufS subfamily; InterPro: IPR010970 Cysteine desulphurases are pyridoxal-phosphate enzymes which catalyse the removal of sulphur from L-cysteine to form L-alanine and elemental sulphur. These enzymes have been shown to play an important role in the biosynthesis of iron-sulphur clusters, thionucleosides in tRNA, thiamine, biotin, lipoate and molydopterin This entry represents a subfamily of NifS-related cysteine desulphurases that are often involved in iron-sulphur cluster formation, which is needed for nitrogen fixation and other vital functions . Many of these enzymes, in addition to cysteine desulphurase activity, also show selenocysteine lyase activity where L-selenocysteine is converted to L-alanine and selenide . Some of these enzymes are much more specific for selenocysteine than cysteine and are thus believed to function in selenium metabolism rather than sulphur metabolism. Structural studies of the E. coli and Synechocystis enzymes indicate that they are homodimers which show a similar fold to other members of the alpha family of pyridoxal-phosphate enzymes .; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=26.63 E-value=36 Score=15.04 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCC-----------CCCCCCCCCCCHH
Q ss_conf 55598989999999999875188842774233224310001122100133212222-----------2101444343101
Q gi|254780278|r 27 PPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIY-----------DDALNERDYGHIA 95 (212)
Q Consensus 27 ~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~-----------~~~L~E~~~G~~e 95 (212)
.||++.|.-+...+-+.|.++-.-......|.-.=|+.=.+.|++.......++.+ |-..-.+||=.|.
T Consensus 144 ~~l~~~G~ld~~~l~~~~~~~TKlVa~~HvSNVlGtvnP~~ei~~~AH~~GA~vlvDGAQ~~pH~pvDv~~ldcDFyvFS 223 (409)
T TIGR01979 144 IPLDDDGTLDLDDLEELLTEKTKLVAITHVSNVLGTVNPVEEIIKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFS 223 (409)
T ss_pred EECCCCCEEEHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCEEEEE
T ss_conf 74488760518889988326982999974202203014878999998657976998625575898988565578744561
Q ss_pred HHH------------HHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEE-EECCCHHH
Q ss_conf 112------------35688621101200102333321123112356553101001210000023324115-64680699
Q gi|254780278|r 96 GMN------------KDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSIL-VVAHGNSL 162 (212)
Q Consensus 96 G~~------------~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vl-iVsHg~~i 162 (212)
|-+ +.|+.++-|.. . =|||....|+.--...+.+.=.+.+.-.-+|. ||+=|+.
T Consensus 224 GHKmyGPtGiGVLYGK~~lLe~MPPf---------~---gGG~MI~~V~~~~g~ty~~~P~KFEAGTPniagviGLgaA- 290 (409)
T TIGR01979 224 GHKMYGPTGIGVLYGKEELLEEMPPF---------L---GGGEMIEEVSLEEGTTYNEAPHKFEAGTPNIAGVIGLGAA- 290 (409)
T ss_pred CCHHHCCCCCEEEHHHHHHHHHCCCC---------C---CCCCEEEEEEECCCCEECCCCCCCCCCCCCHHHHHHHHHH-
T ss_conf 00452576630112788988647784---------6---6986157888057711367875456888358999999999-
Q ss_pred HHHHHHHHCCCHHHHHCCC-----------CCCCEEEEEE---ECCCCCEEEEEECCC
Q ss_conf 9999998589977863231-----------7996199999---889996889971378
Q gi|254780278|r 163 RSLIMVLEKITVDDIPKVT-----------IGTGEAFVYQ---LGADASIVSKNIMRG 206 (212)
Q Consensus 163 r~l~~~l~~~~~~~~~~~~-----------i~~g~~~i~~---~~~~~~~~~~~~~~~ 206 (212)
+=|+..++++.+..-. ..-.++.+|= -.+.+.+++||+-+-
T Consensus 291 ---idYl~~iG~~~I~~~E~~L~~yal~~L~~ipg~~iyGP~~~~~R~g~isFn~~g~ 345 (409)
T TIGR01979 291 ---IDYLEKIGLEKIEAHEKELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV 345 (409)
T ss_pred ---HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCC
T ss_conf ---9998523878999999999999999960189858746877432643333025888
No 62
>pfam06787 UPF0254 Uncharacterized protein family (UPF0254).
Probab=26.55 E-value=48 Score=14.30 Aligned_cols=12 Identities=8% Similarity=-0.216 Sum_probs=5.2
Q ss_pred CCEEEECCCHHH
Q ss_conf 411564680699
Q gi|254780278|r 151 KSILVVAHGNSL 162 (212)
Q Consensus 151 ~~vliVsHg~~i 162 (212)
-+|.|-|-+|+=
T Consensus 99 ~dI~IgTTAGIG 110 (160)
T pfam06787 99 CDIGIGTTAGIG 110 (160)
T ss_pred CCEEEECCCCCC
T ss_conf 885243244547
No 63
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=25.53 E-value=24 Score=16.13 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=14.6
Q ss_pred HHHHCCCCCCCCEEEECCCHHH
Q ss_conf 1000002332411564680699
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~~i 162 (212)
+++.+...++.+|++|||-.-.
T Consensus 179 ~li~~l~~~g~tvi~vtHdl~~ 200 (255)
T PRK11231 179 RLMRELNTQGKTVVTVLHDLNQ 200 (255)
T ss_pred HHHHHHHHCCCEEEEEECCHHH
T ss_conf 9999998689999999378899
No 64
>TIGR01544 HAD-SF-IE HAD-superfamily (subfamily IE) hydrolase, TIGR01544; InterPro: IPR006434 This family is a small group of metazoan sequences with one sequence from Arabidopsis thaliana. The sequences from mouse are annotated as pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the human homolog. However, no such annotation can currently be found for this gene. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB..
Probab=25.37 E-value=51 Score=14.17 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCC----CCCCCCC-------HHHHHHHHHHCCHHHH
Q ss_conf 0133212222210144434310111235688621101200102333----3211231-------1235655310100121
Q gi|254780278|r 73 INQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSY----SVAPPGG-------ESLRDTVARVLAYYVQ 141 (212)
Q Consensus 73 ~~~~~~~~~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~----~~~~p~G-------ES~~~~~~Rv~~~~~~ 141 (212)
|...+.|+++||.|- +.+|+| ....||..+. ..++|.. +|-..+.+|...|+++
T Consensus 75 Lk~KYypIE~dP~lt--------------~eEK~p-yM~eWwtkSh~L~v~~~f~k~~i~~iv~~s~~~lkdg~e~Ff~~ 139 (287)
T TIGR01544 75 LKEKYYPIEVDPVLT--------------VEEKVP-YMVEWWTKSHELLVNEKFDKAKIEEIVAKSDVVLKDGAEDFFEK 139 (287)
T ss_pred HHHCCCCEECCCCCC--------------HHHCCC-HHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 862455445068886--------------542242-00010035552000676875469999987567662471679999
Q ss_pred HHHCCCCCCCCEEEECC--CHHHHHHHHHHH
Q ss_conf 00000233241156468--069999999985
Q gi|254780278|r 142 FILPLILQNKSILVVAH--GNSLRSLIMVLE 170 (212)
Q Consensus 142 ~i~~~~~~~~~vliVsH--g~~ir~l~~~l~ 170 (212)
+ . .-+=+++|+|- |.++-.++.-..
T Consensus 140 L-q---~h~IP~~iFSAGiGn~~e~vlrQa~ 166 (287)
T TIGR01544 140 L-Q---RHSIPVLIFSAGIGNVVEEVLRQAL 166 (287)
T ss_pred H-H---HCCCCEEEEECCCHHHHHHHHHHHC
T ss_conf 8-7---4589899993572179999998635
No 65
>pfam02500 DNA_pack_N Probable DNA packing protein, N-terminus. This family includes proteins that are probably involved in DNA packing in herpesvirus. This domain is normally found at the N-terminus of the protein.
Probab=25.37 E-value=34 Score=15.17 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCCCH
Q ss_conf 699999999858997
Q gi|254780278|r 160 NSLRSLIMVLEKITV 174 (212)
Q Consensus 160 ~~ir~l~~~l~~~~~ 174 (212)
.+|..|++.+.|+..
T Consensus 199 piIsllL~s~egI~I 213 (276)
T pfam02500 199 PIISLLLSSFEGIHI 213 (276)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999973158555
No 66
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=24.52 E-value=30 Score=15.57 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=13.5
Q ss_pred HHHHCCCCCCCCEEEECCCH
Q ss_conf 10000023324115646806
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~ 160 (212)
+++.+....+.+|+++||-.
T Consensus 177 ~~l~~l~~~g~til~~sH~l 196 (218)
T cd03266 177 EFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred HHHHHHHHCCCEEEEECCCH
T ss_conf 99999985799999989878
No 67
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=24.45 E-value=51 Score=14.18 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999999987518884277423322431000112210013321222221014443431011123568
Q gi|254780278|r 36 EANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDV 102 (212)
Q Consensus 36 QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~e~ 102 (212)
|.+.+-++|.++++.|..|=.+--.=++++ .+++|...+|++..++.. .|.|--.++|
T Consensus 11 QCkmTKk~L~~~~i~Fe~inid~~pea~d~----vk~lGF~~~PVi~~~g~~-----~~SGFrPD~l 68 (72)
T TIGR02194 11 QCKMTKKALEEHGIAFEEINIDEQPEAVDY----VKALGFRQVPVIVAEGDE-----SWSGFRPDKL 68 (72)
T ss_pred CCCHHHHHHHHCCCCEEEEECCCCHHHHHH----HHHCCCEECCEEEECCCE-----EEECCCHHHH
T ss_conf 521577667637996157635888437899----987486307626767970-----0213385874
No 68
>pfam02450 LACT Lecithin:cholesterol acyltransferase. Lecithin:cholesterol acyltransferase (LACT) is involved in extracellular metabolism of plasma lipoproteins, including cholesterol.
Probab=24.32 E-value=45 Score=14.46 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=11.4
Q ss_pred HHHHHHHCCHHHHHHHCCCCCCCCEEEECCCH
Q ss_conf 56553101001210000023324115646806
Q gi|254780278|r 129 RDTVARVLAYYVQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 129 ~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~ 160 (212)
.++..|....+++. .+ ..++.|++|+|..
T Consensus 100 ~~yf~~LK~lIE~~-y~--~ng~kVvli~HSm 128 (382)
T pfam02450 100 DDYFKKLKQLIEEA-LK--LSGQKVVLIGHSM 128 (382)
T ss_pred HHHHHHHHHHHHHH-HH--HCCCEEEEEEECC
T ss_conf 68999999999999-99--7098699997578
No 69
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.24 E-value=27 Score=15.79 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=13.9
Q ss_pred HHHHCCCCCCCCEEEECCCHH
Q ss_conf 100000233241156468069
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGNS 161 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~~ 161 (212)
+.+.+...++.+|+++||-.-
T Consensus 136 ~~i~~l~~~g~tvi~~tH~l~ 156 (173)
T cd03230 136 ELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHCCCEEEEECCCHH
T ss_conf 999999968999999928389
No 70
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=24.14 E-value=54 Score=14.03 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHHH------HHHHHCCCHHHHHC
Q ss_conf 1235655310100121000002332411564680699999------99985899778632
Q gi|254780278|r 126 ESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSL------IMVLEKITVDDIPK 179 (212)
Q Consensus 126 ES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~l------~~~l~~~~~~~~~~ 179 (212)
++..+....+..|+.+. ...+++|+|-++.|+-|+. ++...+++..+...
T Consensus 58 ~~i~~~~~~~~~fI~~~----~~~~~~VLVHC~~G~sRS~~vv~aYLm~~~~~~~~~A~~ 113 (138)
T smart00195 58 TKISPYFPEAVEFIEDA----EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYD 113 (138)
T ss_pred CCHHHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 66899999999999999----976997999999877554999999999983999999999
No 71
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.69 E-value=28 Score=15.73 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHHHCCCCCCCCEEEECCCHH
Q ss_conf 100000233241156468069
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGNS 161 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~~ 161 (212)
+.+.+...++.+|++|||-..
T Consensus 168 ~~l~~~~~~g~tiii~sH~~~ 188 (200)
T PRK13540 168 TKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHCCCEEEEEECCHH
T ss_conf 999999868999999942647
No 72
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=23.37 E-value=30 Score=15.57 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=12.2
Q ss_pred CCCCCCCEEEECCCHHH
Q ss_conf 02332411564680699
Q gi|254780278|r 146 LILQNKSILVVAHGNSL 162 (212)
Q Consensus 146 ~~~~~~~vliVsHg~~i 162 (212)
...++.++++|||..-+
T Consensus 180 l~~~g~tii~vTHd~~~ 196 (206)
T TIGR03608 180 LNDEGKTIIIVTHDPEV 196 (206)
T ss_pred HHHCCCEEEEECCCHHH
T ss_conf 98679999998987899
No 73
>PRK13544 consensus
Probab=23.21 E-value=30 Score=15.51 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=15.9
Q ss_pred HHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 0121000002332411564680699
Q gi|254780278|r 138 YYVQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 138 ~~~~~i~~~~~~~~~vliVsHg~~i 162 (212)
.+.++|.+....+..|+++||-.--
T Consensus 164 ~i~~~i~~~~~~g~~vIi~sHd~~e 188 (208)
T PRK13544 164 LILELILTRLEQNGIVIISDHSKTE 188 (208)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 9999999998689999998699999
No 74
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=22.86 E-value=26 Score=15.92 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=13.6
Q ss_pred HHHCCCCCCCCEEEECCCHHH
Q ss_conf 000002332411564680699
Q gi|254780278|r 142 FILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 142 ~i~~~~~~~~~vliVsHg~~i 162 (212)
++.+...++.+|++|||-.-.
T Consensus 182 ll~~l~~~g~tvl~vtHdl~~ 202 (257)
T PRK13548 182 LARQLAERGAAVIVVLHDLNL 202 (257)
T ss_pred HHHHHHHCCCEEEEEECCHHH
T ss_conf 999998559999999278899
No 75
>COG3910 Predicted ATPase [General function prediction only]
Probab=22.66 E-value=58 Score=13.85 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=13.9
Q ss_pred HHCCCCCCCCEEEECCCHHH
Q ss_conf 00002332411564680699
Q gi|254780278|r 143 ILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 143 i~~~~~~~~~vliVsHg~~i 162 (212)
+.....+|.-++|+||.-++
T Consensus 171 l~~la~sGaQ~IiATHSPiL 190 (233)
T COG3910 171 LRDLADSGAQIIIATHSPIL 190 (233)
T ss_pred HHHHHHCCCEEEEEECCHHH
T ss_conf 99987367839998368142
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=22.03 E-value=32 Score=15.33 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=14.2
Q ss_pred HHHHHCCCCCCCCEEEECCCH
Q ss_conf 210000023324115646806
Q gi|254780278|r 140 VQFILPLILQNKSILVVAHGN 160 (212)
Q Consensus 140 ~~~i~~~~~~~~~vliVsHg~ 160 (212)
.+++.+...++.+|+++||-.
T Consensus 166 ~~~l~~l~~~g~til~~sH~l 186 (208)
T cd03268 166 RELILSLRDQGITVLISSHLL 186 (208)
T ss_pred HHHHHHHHHCCCEEEEECCCH
T ss_conf 999999995899999989868
No 77
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.72 E-value=32 Score=15.40 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=14.1
Q ss_pred HHHHCCCCCCCCEEEECCCHHH
Q ss_conf 1000002332411564680699
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~~i 162 (212)
+++.+...++.+|++|||-.-.
T Consensus 175 ~~l~~l~~~g~tii~itHdl~~ 196 (211)
T cd03225 175 ELLKKLKAEGKTIIIVTHDLDL 196 (211)
T ss_pred HHHHHHHHCCCEEEEEECCHHH
T ss_conf 9999999789999999259999
No 78
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.23 E-value=45 Score=14.51 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=14.3
Q ss_pred HHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 21000002332411564680699
Q gi|254780278|r 140 VQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 140 ~~~i~~~~~~~~~vliVsHg~~i 162 (212)
.+.+.+...++..|+++||-.+.
T Consensus 169 ~~~l~~~~~~g~~vi~~tH~dl~ 191 (204)
T PRK13538 169 EQLLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred HHHHHHHHHCCCEEEEEECHHHH
T ss_conf 99999998589989999866989
No 79
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=21.22 E-value=36 Score=15.05 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHHHH
Q ss_conf 1123565531010012100000233241156468069999
Q gi|254780278|r 125 GESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRS 164 (212)
Q Consensus 125 GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ir~ 164 (212)
+-|+.+..+++....+ . ...-+.++++.+|||.|..
T Consensus 191 a~sl~~a~~~~~~i~~-a---a~~v~~diIvLchGGpI~~ 226 (268)
T pfam09370 191 ALSLDDCVELINAIAR-A---ARSVNPDVIVLCHGGPIAT 226 (268)
T ss_pred CCCHHHHHHHHHHHHH-H---HHHHCCCEEEEECCCCCCC
T ss_conf 6789999999999999-9---9985998699951788899
No 80
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=21.17 E-value=62 Score=13.67 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCC--CCEEEECCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 332112311235655310100121000002332--4115646806999999998589977863
Q gi|254780278|r 118 YSVAPPGGESLRDTVARVLAYYVQFILPLILQN--KSILVVAHGNSLRSLIMVLEKITVDDIP 178 (212)
Q Consensus 118 ~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~--~~vliVsHg~~ir~l~~~l~~~~~~~~~ 178 (212)
..+...||||+--+.+.+ |......+ +-|+=.+|-|-+.+|. .++|.+...+.
T Consensus 525 KRFsLEG~EslIP~ld~~-------i~~aa~~Gv~evviGMaHRGRLNVL~-Ni~gKp~~~iF 579 (1234)
T PRK12270 525 KRFSLEGAESVIPLLDAV-------IDQAAEHGLDEVVIGMAHRGRLNVLA-NIVGKPYSQIF 579 (1234)
T ss_pred EEECCCCHHHHHHHHHHH-------HHHHHHCCCCEEEECCCCCHHHHHHH-HHHCCCHHHHH
T ss_conf 343567725899999999-------99998769887998168740799999-87089999999
No 81
>pfam07431 DUF1512 Protein of unknown function (DUF1512). This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=20.88 E-value=50 Score=14.22 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=21.1
Q ss_pred HHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHHH
Q ss_conf 5655310100121000002332411564680699
Q gi|254780278|r 129 RDTVARVLAYYVQFILPLILQNKSILVVAHGNSL 162 (212)
Q Consensus 129 ~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~i 162 (212)
.+..+.+.+.+.++|.+...++++|+||.-|+++
T Consensus 319 ~~~~~~~~~~v~~~i~~~~~~g~~v~viGvGNT~ 352 (356)
T pfam07431 319 YGAVEKALERVKDIILERTKPGDSVLVVGVGNTV 352 (356)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 9999999999999997189999879999556557
No 82
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=20.57 E-value=29 Score=15.64 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=13.2
Q ss_pred HHHHCCCCCCCCEEEECCCHH
Q ss_conf 100000233241156468069
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGNS 161 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~~ 161 (212)
+++.+....+.+|++++|-.-
T Consensus 174 ~~i~~l~~~g~tili~tH~l~ 194 (232)
T cd03218 174 KIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred HHHHHHHHCCCEEEEEECCHH
T ss_conf 999999958999999928399
No 83
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=20.49 E-value=38 Score=14.91 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=13.1
Q ss_pred HHHCCCCCCCCEEEECCCHH
Q ss_conf 00000233241156468069
Q gi|254780278|r 142 FILPLILQNKSILVVAHGNS 161 (212)
Q Consensus 142 ~i~~~~~~~~~vliVsHg~~ 161 (212)
.+.+...++.+|+++||..-
T Consensus 184 ~i~~l~~~g~tiii~sH~l~ 203 (224)
T cd03220 184 RLRELLKQGKTVILVSHDPS 203 (224)
T ss_pred HHHHHHHCCCEEEEECCCHH
T ss_conf 99999858999999889889
No 84
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.35 E-value=35 Score=15.13 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHCCCCCCCCEEEECCCHH
Q ss_conf 100000233241156468069
Q gi|254780278|r 141 QFILPLILQNKSILVVAHGNS 161 (212)
Q Consensus 141 ~~i~~~~~~~~~vliVsHg~~ 161 (212)
+++.+...++.+|+++||-.-
T Consensus 145 ~~i~~l~~~g~tvi~isHdl~ 165 (182)
T cd03215 145 RLIRELADAGKAVLLISSELD 165 (182)
T ss_pred HHHHHHHHCCCEEEEEECCHH
T ss_conf 999999978999999968799
Done!