RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780278|ref|YP_003064691.1| phosphoglyceromutase
[Candidatus Liberibacter asiaticus str. psy62]
(212 letters)
>gnl|CDD|30933 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 234 bits (598), Expect = 2e-62
Identities = 99/224 (44%), Positives = 132/224 (58%), Gaps = 25/224 (11%)
Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
+LVL+RHGQSEWN +NLFTG + LT G+SEA GKLL ++G+ FD A++S LKRA
Sbjct: 2 MKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRA 61
Query: 63 QDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122
T I+L+E +Q I I LNER YG + G+NK + K+G EQV +WRRSY + P
Sbjct: 62 IKTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPP 121
Query: 123 PG-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVA 157
P ESL+DTV RVL Y+ I P + K++L+VA
Sbjct: 122 PKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVA 181
Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201
HGNSLR+LI LE I+ +DI + I TG VY+L + ++S
Sbjct: 182 HGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLKVISA 225
>gnl|CDD|35456 KOG0235, KOG0235, KOG0235, Phosphoglycerate mutase [Carbohydrate
transport and metabolism].
Length = 214
Score = 185 bits (470), Expect = 1e-47
Identities = 77/193 (39%), Positives = 119/193 (61%), Gaps = 3/193 (1%)
Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
RLVLVRHG+SEWN +N+F G + PLT G +A + L + FD ++S LKRA+
Sbjct: 7 RLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAK 66
Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQV-HLWRRS--YSV 120
T ++IL+E+ Q+ + +Y LNER YG + G+NK + ++G EQV R S +
Sbjct: 67 QTAELILEELKQKKVPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEI 126
Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180
P GESL+D + R+L ++ + I + K++L+VAHGNSLR+++ LE I+ + I ++
Sbjct: 127 PLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRAIVKHLEGISDEAIKEL 186
Query: 181 TIGTGEAFVYQLG 193
+ TG VY+L
Sbjct: 187 NLPTGVPIVYELD 199
>gnl|CDD|144039 pfam00300, PGAM, Phosphoglycerate mutase family. Y019_MYCTU and
YK23_YEAST are not included in the Prosite entry.
However these sequences are significantly similar and
contain identical active site residues.
Length = 155
Score = 144 bits (365), Expect = 2e-35
Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
RL LVRHG++EWN++ G + PLT G +A +GK L G+ FD +SS L RA
Sbjct: 1 RLYLVRHGETEWNVEGRLQGDTDSPLTEEGREQARALGKRLK--GIPFDRIYSSPLLRAI 58
Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123
T +I+ + + + I D L ERD+G G+ +++ ++ E PP
Sbjct: 59 QTAEILAEALG---LPIIVDPRLRERDFGDWEGLTFEEIKAEFPEELRAWLEDPADFRPP 115
Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSL 165
GGESL D RV A + + ++L+V+HG +R+L
Sbjct: 116 GGESLADVYERVEAALEELLAK--HPGGNVLIVSHGGVIRAL 155
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
related proteins. Functions include roles in metabolism,
signaling, or regulation, for example, F26BPase affects
glycolysis and gluconeogenesis through controlling the
concentration of F26BP; BPGM controls the concentration
of 2,3-BPG (the main allosteric effector of hemoglobin
in human blood cells); human Sts-1 is a T-cell
regulator; Escherichia coli Six A participates in the
ArcB-dependent His-to-Asp phosphorelay signaling system.
Deficiency and mutation in many of the human members
result in disease, for example erythrocyte BPGM
deficiency is a disease associated with a decrease in
the concentration of 2,3-BPG.
Length = 153
Score = 134 bits (339), Expect = 2e-32
Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 48/198 (24%)
Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
RL LVRHG+SEWN + F G + PLT G +A +GK L + G+ FD +SS LKRA
Sbjct: 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAI 60
Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123
T +IIL+E+ + D L E
Sbjct: 61 QTAEIILEELP--GLPVEVDPRLRE----------------------------------- 83
Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIG 183
ARVL + I P K++L+V+HG LR+L+ L ++ +DI ++ +
Sbjct: 84 ---------ARVLPALEELIAP--HDGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLP 132
Query: 184 TGEAFVYQLGADASIVSK 201
G V +L + V
Sbjct: 133 NGSISVLELDENGGGVLL 150
>gnl|CDD|30755 COG0406, GpmB, Fructose-2,6-bisphosphatase [Carbohydrate transport
and metabolism].
Length = 208
Score = 128 bits (321), Expect = 2e-30
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 5/195 (2%)
Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60
M RL LVRHG++EWN++ G + PLT G ++A + + LA + + FDA +SS LK
Sbjct: 1 MMMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLK 60
Query: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120
RAQ T + + +E+ + DD L E D+G G+ D++ + E Y
Sbjct: 61 RAQQTAEPLAEELG---LPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLA 117
Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180
PPGGESL D RV+A + + ++LVV+HG +R+L+ L + ++++ ++
Sbjct: 118 PPPGGESLADVSKRVVAALAELLRS--PPGNNVLVVSHGGVIRALLAYLLGLDLEELWRL 175
Query: 181 TIGTGEAFVYQLGAD 195
+ V +
Sbjct: 176 RLDNASVTVLEFDDG 190
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 119 bits (300), Expect = 5e-28
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 48/189 (25%)
Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
L LVRHG+ E N + FTG + PLT G +A E+GK L ++ + FD +SS LKRA
Sbjct: 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAI 60
Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123
T +IIL+ + + + D
Sbjct: 61 QTAEIILEGLF-EGLPVEVDPR-------------------------------------- 81
Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIG 183
ARVL ++ + +L K++L+V+HG ++R+L+ L ++ ++I + +
Sbjct: 82 ---------ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSLNLP 132
Query: 184 TGEAFVYQL 192
G V +L
Sbjct: 133 NGSILVLEL 141
>gnl|CDD|35455 KOG0234, KOG0234, KOG0234, Fructose-6-phosphate
2-kinase/fructose-2,6-biphosphatase [Carbohydrate
transport and metabolism].
Length = 438
Score = 56.5 bits (136), Expect = 5e-09
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
R + L RHG+SE+N++ G PL+ G A + K + +Q ++S KR
Sbjct: 240 RTIYLTRHGESEFNVEGRIGGDS--PLSERGSQYAKSLIKFVEEQSSSDLDVWTSQRKRT 297
Query: 63 QDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122
T + + + + + AL+E D G G+ +++ + E + Y
Sbjct: 298 IQTAEGLKLDYSVEQWK-----ALDEIDAGVCEGLTYEEIETNYPEEFALRDKDKYRYRY 352
Query: 123 PGGESLRDTVARVLAYYVQFILPLI--LQNKS-ILVVAHGNSLRSLIMVLEKITVDDIPK 179
PGGES D V R + P+I L+ + +LV+ H +R L+ + ++P
Sbjct: 353 PGGESYSDLVQR--------LEPVIMELERQENVLVITHQAVIRCLLAYFLNCSPVELPY 404
Query: 180 VTI 182
+T+
Sbjct: 405 LTV 407
>gnl|CDD|32245 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
transduction mechanisms].
Length = 163
Score = 53.0 bits (127), Expect = 6e-08
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
RL L+RHG++EW + R PLT G EA + LA QG+ D S RA
Sbjct: 2 MRLYLMRHGKAEWAAPGIADFDR--PLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRA 59
Query: 63 QDTCQIILQEINQQ 76
+ T +I+ + + ++
Sbjct: 60 RQTAEIVAEHLGEK 73
>gnl|CDD|39809 KOG4609, KOG4609, KOG4609, Predicted phosphoglycerate mutase
[General function prediction only].
Length = 284
Score = 43.9 bits (103), Expect = 3e-05
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
R + L+RHG+ G LT +G +A GK LA+ G+ FD +S++ RA
Sbjct: 95 RHIFLIRHGEY------HVDG-SLEHLTELGREQAELTGKRLAELGLKFDKVVASTMVRA 147
Query: 63 QDTCQIILQEINQ 75
+T IIL+ +
Sbjct: 148 TETADIILKHLPD 160
>gnl|CDD|38938 KOG3734, KOG3734, KOG3734, Predicted phosphoglycerate mutase
[Carbohydrate transport and metabolism].
Length = 272
Score = 35.7 bits (82), Expect = 0.009
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 27/214 (12%)
Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSS-SL 59
MN L + +S +PP+T G + IG+ L G+ D F S SL
Sbjct: 48 MNMPFRLPQRIRSPKGYPI------DPPITVSGFIQCKLIGRELLNAGIAIDVIFCSPSL 101
Query: 60 KRAQDTCQIILQEINQQHITPIYDDALNE-----RDYGHIAGMNKDDVCNKWGAEQV-HL 113
+ Q +I ++ + + L E +D ++ D++ V
Sbjct: 102 RCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGF--PVDLN 159
Query: 114 WRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQ--NKSILVVAHGNSL----RSLIM 167
+ Y P GESL D R + + + N+++L+VAHG+S+ L
Sbjct: 160 YDPVYKETPRWGESLEDCNDR----IQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQG 215
Query: 168 VLEKITVD--DIPKVTIGTGEAFVYQLGADASIV 199
+ + VD I + T A + + +V
Sbjct: 216 LPVRYRVDFCQIVEPTPQLSFASLSEKTGYWELV 249
>gnl|CDD|39951 KOG4754, KOG4754, KOG4754, Predicted phosphoglycerate mutase
[Carbohydrate transport and metabolism].
Length = 248
Score = 32.3 bits (73), Expect = 0.10
Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 42/205 (20%)
Query: 5 LVLVRHGQSEWNIKN-------LFTGLRNPPLTSIGMSEANEIGKLL-AKQ-GMVFDAAF 55
+ LVRHGQ N+ +P LT +G + + + K L AKQ +
Sbjct: 17 IYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIV 76
Query: 56 SSSLKRAQDTCQIILQEI---NQQHITPIY--------------DDALNERDYGHIAGMN 98
S ++R T I + + P+ D + R + +
Sbjct: 77 VSPMRRTLQTMVIAFGGYLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSS--VTDLM 134
Query: 99 KDDVCNKWGAEQVH---LWRRSYSVAPPGGESLRDTVARVLAYYVQFILPL-ILQNKSIL 154
K + + L + Y R+ A +F+ L K I
Sbjct: 135 KLFPAYDFSLCETDVDPLKKPDY----------REDDEESAARSREFLEWLAKRPEKEIA 184
Query: 155 VVAHGNSLRSLIMVLEKITVDDIPK 179
VV H LRSL+ ++K D+
Sbjct: 185 VVTHSGFLRSLLKKIQKDCDPDVKP 209
>gnl|CDD|30485 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 31.0 bits (70), Expect = 0.28
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 29 LTSIGMSEANEIGKLLAKQGM-VFDAAFSSSLKRAQDTCQIILQEINQQHI 78
+ G S + E+ A+ G V D SS R +++ E+N +H+
Sbjct: 71 FFAAGGSVSKEVEPKAAEAGCVVIDN---SSAFRMDPDVPLVVPEVNPEHL 118
>gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in
histidine acid phosphatases and phytases; contains a His
residue which is phosphorylated during the reaction.
Catalytic domain of HAP (histidine acid phosphatases)
and phytases (myo-inositol hexakisphosphate
phosphohydrolases). The conserved catalytic core of this
domain contains a His residue which is phosphorylated in
the reaction. Functions in this subgroup include roles
in metabolism, signaling, or regulation, for example
Escherichia coli glucose-1-phosphatase functions to
scavenge glucose from glucose-1-phosphate and the
signaling molecules inositol 1,3,4,5,6-pentakisphosphate
(InsP5) and inositol hexakisphosphate (InsP6) are in
vivo substrates for eukaryotic multiple inositol
polyphosphate phosphatase 1 (Minpp1). Phytases scavenge
phosphate from extracellular sources and are added to
animal feed while prostatic acid phosphatase (PAP) has
been used for many years as a serum marker for prostate
cancer. Recently PAP has been shown in mouse models to
suppress pain by functioning as an
ecto-5prime-nucleotidase. In vivo it dephosphorylates
extracellular adenosine monophosphate (AMP) generating
adenosine,and leading to the activation of A1-adenosine
receptors in dorsal spinal cord.
Length = 242
Score = 28.5 bits (64), Expect = 1.3
Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 35/129 (27%)
Query: 6 VLVRHGQSEWNIKNLFTGLRNP-PLTSIGMSEANEIGKLLAK--QGMVFDA--------A 54
VL RHG R P LT G +A E+G+ + ++
Sbjct: 7 VLSRHGD------------RYPGELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYI 54
Query: 55 FSSSLKRAQDTCQIIL---------QEINQQHITPIYDDALNERD---YGHIAGMNKDDV 102
SS +R + Q L Q I I DD N D Y +A
Sbjct: 55 RSSDSQRTLQSAQAFLAGLFPPDGWQPIAVHTIPEEEDDVSNLFDLCAYETVAKGYSAPF 114
Query: 103 CNKWGAEQV 111
C+ + E+
Sbjct: 115 CDLFTEEEW 123
>gnl|CDD|37405 KOG2194, KOG2194, KOG2194, Aminopeptidases of the M20 family
[Posttranslational modification, protein turnover,
chaperones, General function prediction only].
Length = 834
Score = 28.4 bits (63), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 66 CQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKW 106
+ +E+ Q I P D R+YGH+ G++ V N +
Sbjct: 256 ASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGY 296
>gnl|CDD|177098 CHL00207, rpoB, RNA polymerase beta subunit; Provisional.
Length = 1077
Score = 27.8 bits (62), Expect = 2.1
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 15/68 (22%)
Query: 138 YYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADAS 197
Y +Q LPL N + N + ++PK+T G +
Sbjct: 71 YSIQIYLPLKFINLKTNKIKFIN-----------YLIGNLPKMTQ---RGTFIINGLERV 116
Query: 198 IVSKNIMR 205
IVS+ I+R
Sbjct: 117 IVSQ-IIR 123
>gnl|CDD|110732 pfam01755, Glyco_transf_25, Glycosyltransferase family 25 (LPS
biosynthesis protein). Members of this family belong
to Glycosyltransferase family 25 This is a family of
glycosyltransferases involved in lipopolysaccharide
(LPS) biosynthesis. These enzymes catalyse the transfer
of various sugars onto the growing LPS chain during its
biosynthesis.
Length = 200
Score = 27.8 bits (62), Expect = 2.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 58 SLKRAQDTCQIILQEINQQHITPIYDDALN 87
SLKRA + + I +E + +I + DA++
Sbjct: 8 SLKRATERREHIQKEFGKLNIPFQFFDAID 37
>gnl|CDD|38924 KOG3720, KOG3720, KOG3720, Lysosomal & prostatic acid phosphatases
[Lipid transport and metabolism].
Length = 411
Score = 27.3 bits (60), Expect = 3.0
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 29 LTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
LT GM + E+G+ L K+ + + S +
Sbjct: 71 LTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKE 105
>gnl|CDD|35663 KOG0442, KOG0442, KOG0442, Structure-specific endonuclease
ERCC1-XPF, catalytic component XPF/ERCC4 [Replication,
recombination and repair].
Length = 892
Score = 27.3 bits (60), Expect = 3.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 123 PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLI 166
G+ +L Y Q +L L+ + ++LV+A G SL L+
Sbjct: 2 ESGDIETRKNMALLEYEQQVLLELLEADGNLLVLAPGLSLLRLV 45
>gnl|CDD|39026 KOG3822, KOG3822, KOG3822, Succinyl-CoA:alpha-ketoacid-CoA
transferase [Energy production and conversion].
Length = 516
Score = 27.3 bits (60), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 147 ILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVT 181
I+ K++ V L +LI + E +TVDDI K T
Sbjct: 465 IITEKAVFDVDKKKGL-TLIELWEGLTVDDIKKST 498
>gnl|CDD|147421 pfam05216, UNC-50, UNC-50 family. Gmh1p from S. cerevisiae is
located in the Golgi membrane and interacts with ARF
exchange factors.
Length = 232
Score = 26.8 bits (60), Expect = 3.9
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 135 VLAYYVQFIL-PLILQNKSILVVAHGNSL 162
VL Y +QF L PL++++ S + + GN+L
Sbjct: 146 VLLYVLQFFLLPLLIRD-SFISLFVGNTL 173
>gnl|CDD|145728 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain.
Length = 140
Score = 26.7 bits (60), Expect = 4.3
Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 125 GESLRDTVARVLAYYVQFI 143
GESL+DT ARVL+ YV I
Sbjct: 79 GESLKDT-ARVLSRYVDAI 96
>gnl|CDD|32313 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General
function prediction only].
Length = 340
Score = 26.7 bits (59), Expect = 4.9
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 7 LVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAK 46
V+ G+ ++ + + GL N P IG+ GKL+ K
Sbjct: 299 WVKEGKIQYR-ETIVDGLENAPEAFIGLLSGKNFGKLVVK 337
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 26.1 bits (57), Expect = 7.3
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 43 LLAKQGMVFDAAFSSSLKRAQD-TCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDD 101
LL G + A F S LK QD T Q + +I+P A+ + GM K
Sbjct: 134 LLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMED-------GMGKYG 186
Query: 102 VCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILP 145
W + V ++ Y P ESL +T +++ + +F P
Sbjct: 187 PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFP 230
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,494,816
Number of extensions: 123791
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 32
Length of query: 212
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 122
Effective length of database: 4,318,927
Effective search space: 526909094
Effective search space used: 526909094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)