RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780278|ref|YP_003064691.1| phosphoglyceromutase
[Candidatus Liberibacter asiaticus str. psy62]
         (212 letters)



>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
          Length = 206

 Score =  310 bits (797), Expect = 1e-85
 Identities = 119/206 (57%), Positives = 155/206 (75%)

Query: 1   MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60
           M+R LVLVRHGQSEWN+KNLFTG R+P LT  G++EA   G+ L   G+ FD AF+S+L 
Sbjct: 1   MSRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALS 60

Query: 61  RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120
           RAQ TCQ+IL+E+ Q  +  I D ALNERDYG ++G+NKDD   KWG EQVH+WRRSY V
Sbjct: 61  RAQHTCQLILEELGQPGLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDV 120

Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180
            PPGGESL+DT ARVL YY+Q ILP +L+ + +LV AHGNSLR+L+MVL+ +T + I K+
Sbjct: 121 PPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRALVMVLDGLTPEQILKL 180

Query: 181 TIGTGEAFVYQLGADASIVSKNIMRG 206
            + TG   VY+L AD+++ SK ++  
Sbjct: 181 ELATGVPIVYRLNADSTVASKEVLAA 206


>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
          Length = 247

 Score =  217 bits (556), Expect = 1e-57
 Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 27/219 (12%)

Query: 3   RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
            +LVL+RHG+S+WN +N FTG  +  L+  G+SEA   GKLL ++G  FD A++S LKRA
Sbjct: 1   TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRA 60

Query: 63  QDTCQIILQEINQQHITPIYDD-ALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVA 121
             T  I+L E++Q  + P+     LNER YG + G+NK +   K+G EQV +WRRSY V 
Sbjct: 61  IRTLWIVLDELDQMWL-PVEKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVP 119

Query: 122 P-------------------------PGGESLRDTVARVLAYYVQFILPLILQNKSILVV 156
           P                         P  ESL+DT+ARVL Y+ + I P +   K +L+ 
Sbjct: 120 PPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARVLPYWNETIAPQLKSGKRVLIA 179

Query: 157 AHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195
           AHGNSLR+L+  L+ I+ ++I ++ I TG   VY+L  +
Sbjct: 180 AHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDEN 218


>gnl|CDD|130325 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1.
            Most members of this family are phosphoglycerate mutase
           (EC 5.4.2.1). This enzyme interconverts
           2-phosphoglycerate and 3-phosphoglycerate. The enzyme is
           transiently phosphorylated on an active site histidine
           by 2,3-diphosphoglyerate, which is both substrate and
           product. Some members of this family have are
           phosphoglycerate mutase as a minor activity and act
           primarily as a bisphoglycerate mutase, interconverting
           2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
           5.4.2.4). This model is designated as a subfamily for
           this reason. The second and third paralogs in S.
           cerevisiae are somewhat divergent and apparently
           inactive (see PUBMED:9544241) but are also part of this
           subfamily phylogenetically.
          Length = 245

 Score =  209 bits (535), Expect = 3e-55
 Identities = 94/219 (42%), Positives = 128/219 (58%), Gaps = 27/219 (12%)

Query: 3   RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
            +LVLVRHG+SEWN  NLFTG  +  L+  G  EA   G+LL ++G  FD A++S LKRA
Sbjct: 1   MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRA 60

Query: 63  QDTCQIILQEINQQHITPIYDD-ALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVA 121
             T  I L E++Q  I P+     LNER YG + G+NK +   K+G EQV++WRRS+ V 
Sbjct: 61  IHTLNIALDELDQLWI-PVKKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVP 119

Query: 122 PPG-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVV 156
           PP                           ESL+DT+ARVL Y+   I P +L  K +L+V
Sbjct: 120 PPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARVLPYWNDEIAPDLLSGKRVLIV 179

Query: 157 AHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195
           AHGNSLR+L+  LE I+ ++I ++ I TG   VY+L  +
Sbjct: 180 AHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDEN 218


>gnl|CDD|179225 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
          Length = 228

 Score =  200 bits (510), Expect = 2e-52
 Identities = 87/227 (38%), Positives = 123/227 (54%), Gaps = 28/227 (12%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
            L+L+RHGQS WN KNLFTG  + PL+  G++EA   G+ +  + +  D  F+S+L R+ 
Sbjct: 3   LLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKI--KDLPIDCIFTSTLVRSL 60

Query: 64  DTCQIILQEINQQHI-------------------------TPIY-DDALNERDYGHIAGM 97
            T  + +   +   I                          P++   ALNER YG + G 
Sbjct: 61  MTALLAMTNHSSGKIPYIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGK 120

Query: 98  NKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVA 157
           NK +   K+G EQV LWRRSY  APP GESL DT  R L Y+   ILP + Q K++ V A
Sbjct: 121 NKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSA 180

Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIM 204
           HGNSLRSLIM LEK++ +++  + + TG+  VY+         K ++
Sbjct: 181 HGNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTGQKFEKHKEVL 227


>gnl|CDD|185460 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
           Provisional.
          Length = 236

 Score =  192 bits (489), Expect = 7e-50
 Identities = 87/212 (41%), Positives = 118/212 (55%), Gaps = 25/212 (11%)

Query: 15  WNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEIN 74
           WN +N FTG  + PL+  G+ EA E GKLL ++G  FD  ++S LKRA  T  I+L+E+ 
Sbjct: 1   WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELG 60

Query: 75  QQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP----------- 123
           Q H+  I    LNER YG + G+NK +   K G EQV +WRRSY + PP           
Sbjct: 61  QLHVPVIKSWRLNERHYGALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPG 120

Query: 124 --------------GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVL 169
                           E L+DTV RVL Y+   I P IL  K +LV AHGNSLR+L+  L
Sbjct: 121 NDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRALVKYL 180

Query: 170 EKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201
           +K++ +DI ++ I TG   VY+L  +   + K
Sbjct: 181 DKMSEEDILELNIPTGVPLVYELDENLKPIKK 212


>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
          Length = 228

 Score =  186 bits (473), Expect = 4e-48
 Identities = 93/224 (41%), Positives = 127/224 (56%), Gaps = 27/224 (12%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           +L+L RHGQSEWN KNLFTG  +  L+  G++EA   G+ + +  +  D AF+S L RA 
Sbjct: 3   KLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRAL 62

Query: 64  DTCQIILQEINQQHITPIYDD-ALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122
           DT   IL E  QQ I P+Y    LNER YG + G+NKDD   ++G EQVH+WRRSY V P
Sbjct: 63  DTTHYILTESKQQWI-PVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKP 121

Query: 123 PG-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVA 157
           P                           ESL+DT+ RV+ ++   I   +L  +++LV A
Sbjct: 122 PAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSA 181

Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201
           HGNS+R+LI  LE ++ +DI    I TG   VY+L  D  ++ K
Sbjct: 182 HGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDK 225


>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
          Length = 228

 Score =  179 bits (456), Expect = 4e-46
 Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 25/223 (11%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           +LVL+RHGQSEWN+ N FTG  +  L+  G+ EA + G+L+ + G+ FD A++S L RA 
Sbjct: 3   KLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAI 62

Query: 64  DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP- 122
            T    L+E +Q  I       LNER YG + G+NK +   K+G EQVH+WRRSY V P 
Sbjct: 63  KTLHYALEESDQLWIPETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPP 122

Query: 123 ------------------------PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAH 158
                                   PGGE+L+ T+ RV+ ++   I P +L  K++++ AH
Sbjct: 123 LLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAH 182

Query: 159 GNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201
           GNSLR+L   +E I+ +DI  + + TGE  VY      ++VSK
Sbjct: 183 GNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKLNVVSK 225


>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
          Length = 227

 Score =  178 bits (453), Expect = 8e-46
 Identities = 93/222 (41%), Positives = 123/222 (55%), Gaps = 25/222 (11%)

Query: 5   LVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQD 64
           LV +RHG SEWN KNLFTG R+  LT  G+ EA   GK L + G  FD AF+S L RA  
Sbjct: 3   LVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIK 62

Query: 65  TCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP-- 122
           TC I+L+E NQ  I  + +  LNER YG + G++K     ++G EQVH+WRRSY   P  
Sbjct: 63  TCNIVLEESNQLWIPQVKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPD 122

Query: 123 -----------------------PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHG 159
                                  P  E+L+ T+ RVL ++   I P +L  K +LV AHG
Sbjct: 123 LDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHG 182

Query: 160 NSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201
           NSLR+L   +E I+  DI  + I TG+  VY+L  +  +V K
Sbjct: 183 NSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDNLKVVEK 224


>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
          Length = 249

 Score =  172 bits (437), Expect = 8e-44
 Identities = 85/218 (38%), Positives = 118/218 (54%), Gaps = 23/218 (10%)

Query: 1   MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60
           M   LVL+RHG+SEWN KNLFTG  +  LT  G +EA   G+LLA+ G++ D  ++S L+
Sbjct: 3   MTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLR 62

Query: 61  RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120
           RA  T  + L   ++  I       LNER YG + G +K +   ++G EQ  LWRRSY  
Sbjct: 63  RAIRTANLALDAADRLWIPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDT 122

Query: 121 APPG-----------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVA 157
            PP                         E L+D VAR L Y+   I+P +   K++L+ A
Sbjct: 123 PPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARFLPYWEDDIVPDLKAGKTVLIAA 182

Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195
           HGNSLR+L+  L+ I+ +DI  + I TG   VY+L  D
Sbjct: 183 HGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDED 220


>gnl|CDD|129088 smart00855, PGAM, Phosphoglycerate mutase family.  Phosphoglycerate
           mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
           structurally related enzymes that catalyse reactions
           involving the transfer of phospho groups between the
           three carbon atoms of phosphoglycerate PUBMED:2847721,
           PUBMED:2831102, PUBMED:10958932. Both enzymes can
           catalyse three different reactions with different
           specificities, the isomerization of 2-phosphoglycerate
           (2-PGA) to 3-phosphoglycerate (3-PGA) with
           2,3-diphosphoglycerate (2,3-DPG) as the primer of the
           reaction, the synthesis of 2,3-DPG from 1,3-DPG with
           3-PGA as a primer and the degradation of 2,3-DPG to
           3-PGA (phosphatase activity). In mammals, PGAM is a
           dimeric protein with two isoforms, the M (muscle) and B
           (brain) forms. In yeast, PGAM is a tetrameric protein.
          Length = 155

 Score =  151 bits (384), Expect = 1e-37
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 9/163 (5%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQG-MVFDAAFSSSLKRA 62
           RL L+RHG++E N +   TG  + PLT +G ++A  +G+LLA  G + FD  +SS L RA
Sbjct: 1   RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLGRLRFDVIYSSPLLRA 60

Query: 63  QDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122
           ++T + +   +    +    D  L ERDYG   G+ K++   K    +   W      AP
Sbjct: 61  RETAEALAIALGLGEV----DPRLRERDYGAWEGLTKEEERAKAW-TRPADWLG---AAP 112

Query: 123 PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSL 165
           PGGESL D V R++    + I       +++L+V+HG  +R+L
Sbjct: 113 PGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRAL 155


>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
          Length = 230

 Score =  150 bits (379), Expect = 3e-37
 Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 25/223 (11%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           +LV  RHG+SEWN  NLFTG  +  L+  G  +A + GKL+ + G+ FD AF+S LKRA 
Sbjct: 3   KLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAI 62

Query: 64  DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123
            T  + L+  +Q  +       LNER YG + G NK +   ++G EQVH+WRRSY V PP
Sbjct: 63  KTTNLALEASDQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPP 122

Query: 124 G-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVAH 158
                                      E+L+ T+ R L ++   I P +   K++ V AH
Sbjct: 123 AMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAH 182

Query: 159 GNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201
           GNS+R+L+  ++ ++ D+I  V I      V++     ++V +
Sbjct: 183 GNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVVKE 225


>gnl|CDD|163167 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase.  Members of
           this protein family include the known CobC protein of
           Salmonella and Eschichia coli species, and homologous
           proteins found in cobalamin biosynthesis regions in
           other bacteria. This protein is alpha-ribazole
           phosphatase (EC 3.1.3.73) and, like many phosphatases,
           can be closely related in sequence to other phosphatases
           with different functions. Close homologs excluded from
           this model include proteins with duplications, so this
           model is built in -g mode to suppress hits to those
           proteins.
          Length = 177

 Score =  102 bits (256), Expect = 9e-23
 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 13/184 (7%)

Query: 5   LVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQD 64
           L L+RHG+++ N    + G  + PL   G  +A  + + L    + FDA +SS L R ++
Sbjct: 1   LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKL--ADVPFDAVYSSPLSRCRE 57

Query: 65  TCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPG 124
             +I+ +   ++ +  I D  L E D+G   G + D++   +  E            PPG
Sbjct: 58  LAEILAE---RRGLPIIKDPRLREMDFGDWEGRSWDEIPEAY-PELDAWAADWQHARPPG 113

Query: 125 GESLRDTVARVLAYYVQFILPLI--LQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTI 182
           GES  D   RV     +F+  L+   +  ++L+V HG  +R+L+  L  + ++      +
Sbjct: 114 GESFADFYQRVS----EFLEELLKAHEGDNVLIVTHGGVIRALLAHLLGLPLEQWWSFDV 169

Query: 183 GTGE 186
             G 
Sbjct: 170 EYGS 173


>gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase;
           Provisional.
          Length = 372

 Score = 92.7 bits (231), Expect = 6e-20
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 21/162 (12%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           RL+L+RHGQ+E +++  ++G  NP LT +G  +A    + LA +G + DA  SS L+RA+
Sbjct: 173 RLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAARGGI-DAVVSSPLQRAR 231

Query: 64  DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123
           DT     + +         DD L E D+G   G+   +   +   E    W    SVAPP
Sbjct: 232 DTAAAAAKALGLDVTV---DDDLIETDFGAWEGLTFAEAAERD-PELHRAWLADTSVAPP 287

Query: 124 GGESLRDTVARV-------LAYYVQFILPLILQNKSILVVAH 158
           GGES      RV       +A Y            ++LVV+H
Sbjct: 288 GGESFDAVARRVRRARDRLIAEY---------PGATVLVVSH 320


>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
          Length = 199

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 23/174 (13%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           RL LVRHG+++ N+  L++G    PLT+ G+ +A  +  LL  + + FD    S L+RAQ
Sbjct: 2   RLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLL--RDVPFDLVLCSELERAQ 59

Query: 64  DTCQIILQ-EINQQHITPIYDDALNERDYG-----HIAGMNKDDVCN--KWGAEQVHLWR 115
            T +++L       HI       LNE  +G     H   + ++D  N   W  +    W+
Sbjct: 60  HTARLVLSDRQLPVHI----IPELNEMFFGDWEMRHHRDLMQEDAENYAAWCND----WQ 111

Query: 116 RSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVL 169
                 P  GE  +    RV  +  +       QN  +L+V+H   L  LI  L
Sbjct: 112 ---HAIPTNGEGFQAFSQRVERFIARLSAFQHYQN--LLIVSHQGVLSLLIARL 160


>gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional.
          Length = 203

 Score = 56.6 bits (136), Expect = 4e-09
 Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 9/178 (5%)

Query: 1   MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60
           M   + + RHG++EWN+     G +N  LT  G+ +A ++G+ +  + +   A +SS  +
Sbjct: 1   MKTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERM--KDLSIHAIYSSPSE 58

Query: 61  RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHL-WRRSYS 119
           R   T ++I  E   + I  I D+   E + G   G   DD+  ++  + + L W   + 
Sbjct: 59  RTLHTAELIKGE---RDIPIIADEHFYEINMGIWEGQTIDDIERQY-PDDIQLFWNEPHL 114

Query: 120 VAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDI 177
                GE+      RV+   +Q +L    + +SIL+V+H  + + L+     I ++++
Sbjct: 115 FQSTSGENFEAVHKRVIE-GMQLLLEK-HKGESILIVSHAAAAKLLVGHFAGIEIENV 170


>gnl|CDD|163560 TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family.
           A three-gene system broadly conserved among the
           Actinobacteria includes MSMEG_4193 and homologs, a
           subgroup among the larger phosphoglycerate mutase family
           protein (pfam00300). Another member of the trio is a
           probable kinase, related to phosphatidylinositol
           kinases; that context supports the hypothesis that this
           protein acts as a phosphomutase.
          Length = 204

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 20/140 (14%)

Query: 5   LVLVRHGQSEWNIKNLFTGLRNP--PLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
           ++LVRHG+S  N      G R P   L   G  +A  + + LA   +   A  SS L+R 
Sbjct: 2   VILVRHGRSTANTAGTLAG-RTPGVDLDERGREQAAALAERLA--DLPIAAIVSSPLERC 58

Query: 63  QDTCQIILQEINQQHITPIYDDALNERDYGH-----IAGMNKDDVCNKWGAEQVHLWRRS 117
           ++T + I +    + + P  D+ L E DYG      +  + K+ +   W   Q H     
Sbjct: 59  RETAEPIAE---ARGLPPRVDERLGECDYGDWTGRELKELAKEPL---WPVVQAH----P 108

Query: 118 YSVAPPGGESLRDTVARVLA 137
            +   PGGESL    AR +A
Sbjct: 109 SAAVFPGGESLAQVQARAVA 128


>gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional.
          Length = 215

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 19/166 (11%)

Query: 7   LVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTC 66
           LVRHG+++WN +    G  + PLT+ G  +A ++ +   + G+      SS L R + T 
Sbjct: 6   LVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAKELGITH--IISSDLGRTRRTA 63

Query: 67  QIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP---- 122
           +II Q      I    D  L E + G +   + D +      E+   WRR          
Sbjct: 64  EIIAQACGCDIIF---DPRLRELNMGVLEKRHIDSL-----TEEEEGWRRQLVNGTVDGR 115

Query: 123 -PGGESLRDTVARV-LAYYVQFILPLILQNKSILVVAHGNSLRSLI 166
            P GES+++   R+  A      LP   Q    L+V+HG +L  L+
Sbjct: 116 IPEGESMQELSDRMHAALESCLELP---QGSRPLLVSHGIALGCLV 158


>gnl|CDD|139587 PRK13462, PRK13462, acid phosphatase; Provisional.
          Length = 203

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 2   NRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKR 61
           N RL+L+RHG++EW+     TG     LT  G ++A   G+ L +  +      SS  +R
Sbjct: 5   NHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRR 64

Query: 62  AQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVA 121
           A DT ++    +++          L E DYG   G+    +      E    W   ++  
Sbjct: 65  ALDTAKLAGLTVDEV------SGLLAEWDYGSYEGLTTPQI-----RESEPDW-LVWTHG 112

Query: 122 PPGGESLRDTVAR---VLAYYVQFILPLILQNKSILVVAHGNSLRSLI 166
            PGGES+     R    +A  ++      ++++ ++ V+HG+  R++I
Sbjct: 113 CPGGESVAQVNERADRAVALALEH-----MESRDVVFVSHGHFSRAVI 155


>gnl|CDD|185459 PTZ00122, PTZ00122, phosphoglycerate mutase; Provisional.
          Length = 299

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 30/171 (17%)

Query: 3   RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQ---GMVFD---AAFS 56
           R+++LVRHGQ      N         LT +G  +A   GK L +Q    +V     A + 
Sbjct: 103 RQIILVRHGQYINESSN---DDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYH 159

Query: 57  SSLKRAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRR 116
           S + RA++T +II +      +  I D  L E                          R 
Sbjct: 160 SDMTRAKETAEIISEAFPGVRL--IEDPNLAEG----------------VPCAPDPPSRG 201

Query: 117 SYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIM 167
                    E L D      A+   F  P+  ++   ++V HGN +R L+ 
Sbjct: 202 FKPTI---EEILEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRYLVC 249


>gnl|CDD|129351 TIGR00249, sixA, phosphohistidine phosphatase SixA. 
          Length = 152

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 4  RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
          +L ++RHG +   +      +R  PLT+ G  E+  + + L  QG+  +    S   RA+
Sbjct: 2  QLFIMRHGDAA--LDAASDSVR--PLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAE 57

Query: 64 DTCQIILQEIN 74
           T +I+   +N
Sbjct: 58 QTAEIVGDCLN 68


>gnl|CDD|180636 PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed.
          Length = 369

 Score = 28.3 bits (64), Expect = 1.6
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 10/53 (18%)

Query: 38  NEI-GKLLAK--QGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDDALN 87
           NE+  KL A   QG   DAA  S+L+   D   IIL  +N+  I    DDAL 
Sbjct: 79  NEVYPKLRAAGWQGYWIDAA--STLRMKDDAI-IILDPVNRDVI----DDALA 124


>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
          Length = 248

 Score = 27.8 bits (62), Expect = 2.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 163 RSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNI 203
              I  L++I  D   +V I TGE   + +GAD S  + + 
Sbjct: 30  NEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF 70


>gnl|CDD|162471 TIGR01659, sex-lethal, sex-lethal family splicing factor.  This
           model describes the sex-lethal family of splicing
           factors found in Dipteran insects. The sex-lethal
           phenotype, however, may be limited to the Melanogasters
           and closely related species. In Drosophila the protein
           acts as an inhibitor of splicing. This subfamily is most
           closely related to the ELAV/HUD subfamily of splicing
           factors (TIGR01661).
          Length = 346

 Score = 25.7 bits (56), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 115 RRSYSVAPPGGESLRDT 131
           R   S A PGGES++DT
Sbjct: 178 RLKVSYARPGGESIKDT 194


>gnl|CDD|185650 PTZ00471, PTZ00471, 60S ribosomal protein L27; Provisional.
          Length = 134

 Score = 26.0 bits (57), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)

Query: 82 YDDALNERDYGH--IAGMNK 99
          +D A  ER YGH  +AG+ K
Sbjct: 29 FDTASKERPYGHALVAGIKK 48


>gnl|CDD|182066 PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific
           transporter subunit IIABC; Provisional.
          Length = 631

 Score = 25.9 bits (57), Expect = 8.5
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 116 RSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVA 157
           R+        +S++  + + L   + F +PLI+   ++L VA
Sbjct: 270 RTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVA 311


>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase.
          Length = 404

 Score = 25.8 bits (57), Expect = 8.8
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 149 QNKSILVVAH--GNSLR--SLIMVLEKITVDDIPKVTIGTG 185
           QN S+  V+H  G SL+    I  LE + V DI  +  GTG
Sbjct: 73  QNGSLFDVSHMCGLSLKGKDAIPFLETLVVADIAGLKDGTG 113


>gnl|CDD|180457 PRK06193, PRK06193, hypothetical protein; Provisional.
          Length = 206

 Score = 25.4 bits (56), Expect = 10.0
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 29  LTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDDALN 87
           L+  G  +A  IG+      +      SS   RA +T Q+              +  LN
Sbjct: 74  LSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAFGRHE-------KEIRLN 125


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,461,589
Number of extensions: 212882
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 33
Length of query: 212
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,071,361
Effective search space: 500777403
Effective search space used: 500777403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)