RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62] (212 letters) >gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional. Length = 206 Score = 310 bits (797), Expect = 1e-85 Identities = 119/206 (57%), Positives = 155/206 (75%) Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60 M+R LVLVRHGQSEWN+KNLFTG R+P LT G++EA G+ L G+ FD AF+S+L Sbjct: 1 MSRTLVLVRHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALS 60 Query: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120 RAQ TCQ+IL+E+ Q + I D ALNERDYG ++G+NKDD KWG EQVH+WRRSY V Sbjct: 61 RAQHTCQLILEELGQPGLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDV 120 Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180 PPGGESL+DT ARVL YY+Q ILP +L+ + +LV AHGNSLR+L+MVL+ +T + I K+ Sbjct: 121 PPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRALVMVLDGLTPEQILKL 180 Query: 181 TIGTGEAFVYQLGADASIVSKNIMRG 206 + TG VY+L AD+++ SK ++ Sbjct: 181 ELATGVPIVYRLNADSTVASKEVLAA 206 >gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional. Length = 247 Score = 217 bits (556), Expect = 1e-57 Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 27/219 (12%) Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62 +LVL+RHG+S+WN +N FTG + L+ G+SEA GKLL ++G FD A++S LKRA Sbjct: 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRA 60 Query: 63 QDTCQIILQEINQQHITPIYDD-ALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVA 121 T I+L E++Q + P+ LNER YG + G+NK + K+G EQV +WRRSY V Sbjct: 61 IRTLWIVLDELDQMWL-PVEKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVP 119 Query: 122 P-------------------------PGGESLRDTVARVLAYYVQFILPLILQNKSILVV 156 P P ESL+DT+ARVL Y+ + I P + K +L+ Sbjct: 120 PPALEKDDERYPGHDPRYAKLPEEELPLTESLKDTIARVLPYWNETIAPQLKSGKRVLIA 179 Query: 157 AHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195 AHGNSLR+L+ L+ I+ ++I ++ I TG VY+L + Sbjct: 180 AHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDEN 218 >gnl|CDD|130325 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically. Length = 245 Score = 209 bits (535), Expect = 3e-55 Identities = 94/219 (42%), Positives = 128/219 (58%), Gaps = 27/219 (12%) Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62 +LVLVRHG+SEWN NLFTG + L+ G EA G+LL ++G FD A++S LKRA Sbjct: 1 MKLVLVRHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRA 60 Query: 63 QDTCQIILQEINQQHITPIYDD-ALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVA 121 T I L E++Q I P+ LNER YG + G+NK + K+G EQV++WRRS+ V Sbjct: 61 IHTLNIALDELDQLWI-PVKKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVP 119 Query: 122 PPG-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVV 156 PP ESL+DT+ARVL Y+ I P +L K +L+V Sbjct: 120 PPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKDTIARVLPYWNDEIAPDLLSGKRVLIV 179 Query: 157 AHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195 AHGNSLR+L+ LE I+ ++I ++ I TG VY+L + Sbjct: 180 AHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDEN 218 >gnl|CDD|179225 PRK01112, PRK01112, phosphoglyceromutase; Provisional. Length = 228 Score = 200 bits (510), Expect = 2e-52 Identities = 87/227 (38%), Positives = 123/227 (54%), Gaps = 28/227 (12%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 L+L+RHGQS WN KNLFTG + PL+ G++EA G+ + + + D F+S+L R+ Sbjct: 3 LLILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKI--KDLPIDCIFTSTLVRSL 60 Query: 64 DTCQIILQEINQQHI-------------------------TPIY-DDALNERDYGHIAGM 97 T + + + I P++ ALNER YG + G Sbjct: 61 MTALLAMTNHSSGKIPYIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGK 120 Query: 98 NKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVA 157 NK + K+G EQV LWRRSY APP GESL DT R L Y+ ILP + Q K++ V A Sbjct: 121 NKAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSA 180 Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIM 204 HGNSLRSLIM LEK++ +++ + + TG+ VY+ K ++ Sbjct: 181 HGNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTGQKFEKHKEVL 227 >gnl|CDD|185460 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein; Provisional. Length = 236 Score = 192 bits (489), Expect = 7e-50 Identities = 87/212 (41%), Positives = 118/212 (55%), Gaps = 25/212 (11%) Query: 15 WNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEIN 74 WN +N FTG + PL+ G+ EA E GKLL ++G FD ++S LKRA T I+L+E+ Sbjct: 1 WNKENRFTGWTDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELG 60 Query: 75 QQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP----------- 123 Q H+ I LNER YG + G+NK + K G EQV +WRRSY + PP Sbjct: 61 QLHVPVIKSWRLNERHYGALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPG 120 Query: 124 --------------GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVL 169 E L+DTV RVL Y+ I P IL K +LV AHGNSLR+L+ L Sbjct: 121 NDPVYKDIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRALVKYL 180 Query: 170 EKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201 +K++ +DI ++ I TG VY+L + + K Sbjct: 181 DKMSEEDILELNIPTGVPLVYELDENLKPIKK 212 >gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional. Length = 228 Score = 186 bits (473), Expect = 4e-48 Identities = 93/224 (41%), Positives = 127/224 (56%), Gaps = 27/224 (12%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 +L+L RHGQSEWN KNLFTG + L+ G++EA G+ + + + D AF+S L RA Sbjct: 3 KLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRAL 62 Query: 64 DTCQIILQEINQQHITPIYDD-ALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122 DT IL E QQ I P+Y LNER YG + G+NKDD ++G EQVH+WRRSY V P Sbjct: 63 DTTHYILTESKQQWI-PVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKP 121 Query: 123 PG-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVA 157 P ESL+DT+ RV+ ++ I +L +++LV A Sbjct: 122 PAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSA 181 Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201 HGNS+R+LI LE ++ +DI I TG VY+L D ++ K Sbjct: 182 HGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDK 225 >gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional. Length = 228 Score = 179 bits (456), Expect = 4e-46 Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 25/223 (11%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 +LVL+RHGQSEWN+ N FTG + L+ G+ EA + G+L+ + G+ FD A++S L RA Sbjct: 3 KLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAI 62 Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP- 122 T L+E +Q I LNER YG + G+NK + K+G EQVH+WRRSY V P Sbjct: 63 KTLHYALEESDQLWIPETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPP 122 Query: 123 ------------------------PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAH 158 PGGE+L+ T+ RV+ ++ I P +L K++++ AH Sbjct: 123 LLDADDEGSAAKDRRYANLDPRIIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAH 182 Query: 159 GNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201 GNSLR+L +E I+ +DI + + TGE VY ++VSK Sbjct: 183 GNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKLNVVSK 225 >gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional. Length = 227 Score = 178 bits (453), Expect = 8e-46 Identities = 93/222 (41%), Positives = 123/222 (55%), Gaps = 25/222 (11%) Query: 5 LVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQD 64 LV +RHG SEWN KNLFTG R+ LT G+ EA GK L + G FD AF+S L RA Sbjct: 3 LVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIK 62 Query: 65 TCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP-- 122 TC I+L+E NQ I + + LNER YG + G++K ++G EQVH+WRRSY P Sbjct: 63 TCNIVLEESNQLWIPQVKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPD 122 Query: 123 -----------------------PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHG 159 P E+L+ T+ RVL ++ I P +L K +LV AHG Sbjct: 123 LDPQDPNSAHNDRRYAHLPADVVPDAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHG 182 Query: 160 NSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201 NSLR+L +E I+ DI + I TG+ VY+L + +V K Sbjct: 183 NSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDNLKVVEK 224 >gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional. Length = 249 Score = 172 bits (437), Expect = 8e-44 Identities = 85/218 (38%), Positives = 118/218 (54%), Gaps = 23/218 (10%) Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60 M LVL+RHG+SEWN KNLFTG + LT G +EA G+LLA+ G++ D ++S L+ Sbjct: 3 MTYTLVLLRHGESEWNAKNLFTGWVDVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLR 62 Query: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120 RA T + L ++ I LNER YG + G +K + ++G EQ LWRRSY Sbjct: 63 RAIRTANLALDAADRLWIPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDT 122 Query: 121 APPG-----------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVA 157 PP E L+D VAR L Y+ I+P + K++L+ A Sbjct: 123 PPPPIEDGSEYSQDNDPRYADLGVGPRTECLKDVVARFLPYWEDDIVPDLKAGKTVLIAA 182 Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGAD 195 HGNSLR+L+ L+ I+ +DI + I TG VY+L D Sbjct: 183 HGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDED 220 >gnl|CDD|129088 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. Length = 155 Score = 151 bits (384), Expect = 1e-37 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 9/163 (5%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQG-MVFDAAFSSSLKRA 62 RL L+RHG++E N + TG + PLT +G ++A +G+LLA G + FD +SS L RA Sbjct: 1 RLYLIRHGETEANREGRLTGWTDSPLTELGRAQAEALGELLASLGRLRFDVIYSSPLLRA 60 Query: 63 QDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122 ++T + + + + D L ERDYG G+ K++ K + W AP Sbjct: 61 RETAEALAIALGLGEV----DPRLRERDYGAWEGLTKEEERAKAW-TRPADWLG---AAP 112 Query: 123 PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSL 165 PGGESL D V R++ + I +++L+V+HG +R+L Sbjct: 113 PGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRAL 155 >gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional. Length = 230 Score = 150 bits (379), Expect = 3e-37 Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 25/223 (11%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 +LV RHG+SEWN NLFTG + L+ G +A + GKL+ + G+ FD AF+S LKRA Sbjct: 3 KLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAI 62 Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123 T + L+ +Q + LNER YG + G NK + ++G EQVH+WRRSY V PP Sbjct: 63 KTTNLALEASDQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPP 122 Query: 124 G-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVAH 158 E+L+ T+ R L ++ I P + K++ V AH Sbjct: 123 AMAKDDEYSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAH 182 Query: 159 GNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201 GNS+R+L+ ++ ++ D+I V I V++ ++V + Sbjct: 183 GNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVVKE 225 >gnl|CDD|163167 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins. Length = 177 Score = 102 bits (256), Expect = 9e-23 Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 13/184 (7%) Query: 5 LVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQD 64 L L+RHG+++ N + G + PL G +A + + L + FDA +SS L R ++ Sbjct: 1 LYLIRHGETDVNAGLCY-GQTDVPLAEKGAEQAAALREKL--ADVPFDAVYSSPLSRCRE 57 Query: 65 TCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPG 124 +I+ + ++ + I D L E D+G G + D++ + E PPG Sbjct: 58 LAEILAE---RRGLPIIKDPRLREMDFGDWEGRSWDEIPEAY-PELDAWAADWQHARPPG 113 Query: 125 GESLRDTVARVLAYYVQFILPLI--LQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTI 182 GES D RV +F+ L+ + ++L+V HG +R+L+ L + ++ + Sbjct: 114 GESFADFYQRVS----EFLEELLKAHEGDNVLIVTHGGVIRALLAHLLGLPLEQWWSFDV 169 Query: 183 GTGE 186 G Sbjct: 170 EYGS 173 >gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase; Provisional. Length = 372 Score = 92.7 bits (231), Expect = 6e-20 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 21/162 (12%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 RL+L+RHGQ+E +++ ++G NP LT +G +A + LA +G + DA SS L+RA+ Sbjct: 173 RLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYLAARGGI-DAVVSSPLQRAR 231 Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123 DT + + DD L E D+G G+ + + E W SVAPP Sbjct: 232 DTAAAAAKALGLDVTV---DDDLIETDFGAWEGLTFAEAAERD-PELHRAWLADTSVAPP 287 Query: 124 GGESLRDTVARV-------LAYYVQFILPLILQNKSILVVAH 158 GGES RV +A Y ++LVV+H Sbjct: 288 GGESFDAVARRVRRARDRLIAEY---------PGATVLVVSH 320 >gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional. Length = 199 Score = 91.7 bits (228), Expect = 1e-19 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 23/174 (13%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 RL LVRHG+++ N+ L++G PLT+ G+ +A + LL + + FD S L+RAQ Sbjct: 2 RLWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLL--RDVPFDLVLCSELERAQ 59 Query: 64 DTCQIILQ-EINQQHITPIYDDALNERDYG-----HIAGMNKDDVCN--KWGAEQVHLWR 115 T +++L HI LNE +G H + ++D N W + W+ Sbjct: 60 HTARLVLSDRQLPVHI----IPELNEMFFGDWEMRHHRDLMQEDAENYAAWCND----WQ 111 Query: 116 RSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVL 169 P GE + RV + + QN +L+V+H L LI L Sbjct: 112 ---HAIPTNGEGFQAFSQRVERFIARLSAFQHYQN--LLIVSHQGVLSLLIARL 160 >gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional. Length = 203 Score = 56.6 bits (136), Expect = 4e-09 Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 9/178 (5%) Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60 M + + RHG++EWN+ G +N LT G+ +A ++G+ + + + A +SS + Sbjct: 1 MKTTVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERM--KDLSIHAIYSSPSE 58 Query: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHL-WRRSYS 119 R T ++I E + I I D+ E + G G DD+ ++ + + L W + Sbjct: 59 RTLHTAELIKGE---RDIPIIADEHFYEINMGIWEGQTIDDIERQY-PDDIQLFWNEPHL 114 Query: 120 VAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDI 177 GE+ RV+ +Q +L + +SIL+V+H + + L+ I ++++ Sbjct: 115 FQSTSGENFEAVHKRVIE-GMQLLLEK-HKGESILIVSHAAAAKLLVGHFAGIEIENV 170 >gnl|CDD|163560 TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase. Length = 204 Score = 54.7 bits (132), Expect = 2e-08 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 20/140 (14%) Query: 5 LVLVRHGQSEWNIKNLFTGLRNP--PLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62 ++LVRHG+S N G R P L G +A + + LA + A SS L+R Sbjct: 2 VILVRHGRSTANTAGTLAG-RTPGVDLDERGREQAAALAERLA--DLPIAAIVSSPLERC 58 Query: 63 QDTCQIILQEINQQHITPIYDDALNERDYGH-----IAGMNKDDVCNKWGAEQVHLWRRS 117 ++T + I + + + P D+ L E DYG + + K+ + W Q H Sbjct: 59 RETAEPIAE---ARGLPPRVDERLGECDYGDWTGRELKELAKEPL---WPVVQAH----P 108 Query: 118 YSVAPPGGESLRDTVARVLA 137 + PGGESL AR +A Sbjct: 109 SAAVFPGGESLAQVQARAVA 128 >gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional. Length = 215 Score = 54.0 bits (130), Expect = 3e-08 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 19/166 (11%) Query: 7 LVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTC 66 LVRHG+++WN + G + PLT+ G +A ++ + + G+ SS L R + T Sbjct: 6 LVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAKELGITH--IISSDLGRTRRTA 63 Query: 67 QIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP---- 122 +II Q I D L E + G + + D + E+ WRR Sbjct: 64 EIIAQACGCDIIF---DPRLRELNMGVLEKRHIDSL-----TEEEEGWRRQLVNGTVDGR 115 Query: 123 -PGGESLRDTVARV-LAYYVQFILPLILQNKSILVVAHGNSLRSLI 166 P GES+++ R+ A LP Q L+V+HG +L L+ Sbjct: 116 IPEGESMQELSDRMHAALESCLELP---QGSRPLLVSHGIALGCLV 158 >gnl|CDD|139587 PRK13462, PRK13462, acid phosphatase; Provisional. Length = 203 Score = 53.3 bits (128), Expect = 4e-08 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 20/168 (11%) Query: 2 NRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKR 61 N RL+L+RHG++EW+ TG LT G ++A G+ L + + SS +R Sbjct: 5 NHRLLLLRHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRR 64 Query: 62 AQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVA 121 A DT ++ +++ L E DYG G+ + E W ++ Sbjct: 65 ALDTAKLAGLTVDEV------SGLLAEWDYGSYEGLTTPQI-----RESEPDW-LVWTHG 112 Query: 122 PPGGESLRDTVAR---VLAYYVQFILPLILQNKSILVVAHGNSLRSLI 166 PGGES+ R +A ++ ++++ ++ V+HG+ R++I Sbjct: 113 CPGGESVAQVNERADRAVALALEH-----MESRDVVFVSHGHFSRAVI 155 >gnl|CDD|185459 PTZ00122, PTZ00122, phosphoglycerate mutase; Provisional. Length = 299 Score = 43.6 bits (103), Expect = 4e-05 Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 30/171 (17%) Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQ---GMVFD---AAFS 56 R+++LVRHGQ N LT +G +A GK L +Q +V A + Sbjct: 103 RQIILVRHGQYINESSN---DDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYH 159 Query: 57 SSLKRAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRR 116 S + RA++T +II + + I D L E R Sbjct: 160 SDMTRAKETAEIISEAFPGVRL--IEDPNLAEG----------------VPCAPDPPSRG 201 Query: 117 SYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIM 167 E L D A+ F P+ ++ ++V HGN +R L+ Sbjct: 202 FKPTI---EEILEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRYLVC 249 >gnl|CDD|129351 TIGR00249, sixA, phosphohistidine phosphatase SixA. Length = 152 Score = 37.5 bits (87), Expect = 0.003 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 +L ++RHG + + +R PLT+ G E+ + + L QG+ + S RA+ Sbjct: 2 QLFIMRHGDAA--LDAASDSVR--PLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAE 57 Query: 64 DTCQIILQEIN 74 T +I+ +N Sbjct: 58 QTAEIVGDCLN 68 >gnl|CDD|180636 PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed. Length = 369 Score = 28.3 bits (64), Expect = 1.6 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 10/53 (18%) Query: 38 NEI-GKLLAK--QGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDDALN 87 NE+ KL A QG DAA S+L+ D IIL +N+ I DDAL Sbjct: 79 NEVYPKLRAAGWQGYWIDAA--STLRMKDDAI-IILDPVNRDVI----DDALA 124 >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional. Length = 248 Score = 27.8 bits (62), Expect = 2.4 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 163 RSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNI 203 I L++I D +V I TGE + +GAD S + + Sbjct: 30 NEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF 70 >gnl|CDD|162471 TIGR01659, sex-lethal, sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661). Length = 346 Score = 25.7 bits (56), Expect = 8.0 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 115 RRSYSVAPPGGESLRDT 131 R S A PGGES++DT Sbjct: 178 RLKVSYARPGGESIKDT 194 >gnl|CDD|185650 PTZ00471, PTZ00471, 60S ribosomal protein L27; Provisional. Length = 134 Score = 26.0 bits (57), Expect = 8.3 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%) Query: 82 YDDALNERDYGH--IAGMNK 99 +D A ER YGH +AG+ K Sbjct: 29 FDTASKERPYGHALVAGIKK 48 >gnl|CDD|182066 PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional. Length = 631 Score = 25.9 bits (57), Expect = 8.5 Identities = 10/42 (23%), Positives = 21/42 (50%) Query: 116 RSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVA 157 R+ +S++ + + L + F +PLI+ ++L VA Sbjct: 270 RTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVA 311 >gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase. Length = 404 Score = 25.8 bits (57), Expect = 8.8 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Query: 149 QNKSILVVAH--GNSLR--SLIMVLEKITVDDIPKVTIGTG 185 QN S+ V+H G SL+ I LE + V DI + GTG Sbjct: 73 QNGSLFDVSHMCGLSLKGKDAIPFLETLVVADIAGLKDGTG 113 >gnl|CDD|180457 PRK06193, PRK06193, hypothetical protein; Provisional. Length = 206 Score = 25.4 bits (56), Expect = 10.0 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 7/59 (11%) Query: 29 LTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPIYDDALN 87 L+ G +A IG+ + SS RA +T Q+ + LN Sbjct: 74 LSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAFGRHE-------KEIRLN 125 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.135 0.393 Gapped Lambda K H 0.267 0.0704 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,461,589 Number of extensions: 212882 Number of successful extensions: 433 Number of sequences better than 10.0: 1 Number of HSP's gapped: 405 Number of HSP's successfully gapped: 33 Length of query: 212 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 123 Effective length of database: 4,071,361 Effective search space: 500777403 Effective search space used: 500777403 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.0 bits)