BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780278|ref|YP_003064691.1| phosphoglyceromutase
[Candidatus Liberibacter asiaticus str. psy62]
(212 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 212
Score = 440 bits (1132), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60
MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK
Sbjct: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60
Query: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120
RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV
Sbjct: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120
Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180
APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV
Sbjct: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180
Query: 181 TIGTGEAFVYQLGADASIVSKNIMRGQSPAEK 212
TIGTGEAFVYQLGADASIVSKNIMRGQSPAEK
Sbjct: 181 TIGTGEAFVYQLGADASIVSKNIMRGQSPAEK 212
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 28.9 bits (63), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 93 HIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFIL 144
H+AG KD + + +Q H + S GGE +R VARVLA F++
Sbjct: 385 HVAGYIKDFL---FHPDQAHSLMKHLS----GGEKMRAIVARVLAQPFNFLI 429
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 25.8 bits (55), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 28/125 (22%)
Query: 51 FDAAFSSSLKRAQDTCQIILQEINQQH--ITPIYDDALNERDYGHIAGMNKDDVCN---- 104
+D ++ KR DTC+I+ ++I+ + Y + RD + N D+V
Sbjct: 91 YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAY---YNDDEVYKGADG 147
Query: 105 ----------KWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSIL 154
+W E+ + +R S + +D + + +FILP+ +N+ I
Sbjct: 148 QYYNAQHNPVQWMEEEGYFFRLS---------AYQDKLLSYYESHPEFILPIERRNEVIS 198
Query: 155 VVAHG 159
V G
Sbjct: 199 FVKSG 203
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 148 LQNKSILVVAHGNSLRSLIMVL 169
LQN+S L V GN SLI L
Sbjct: 1014 LQNRSALFVGEGNVFDSLIQRL 1035
>gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 316
Score = 23.5 bits (49), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 19 NLFTGLRNPPLTSIGMSEANEIGKLLA 45
N+F+ ++ PL I EIG +LA
Sbjct: 100 NIFSFIKGSPLNHISDIHCEEIGSMLA 126
>gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 346
Score = 23.5 bits (49), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 164 SLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201
S+IM L+ T+ DIP++ GT + L +SI +K
Sbjct: 311 SVIMFLQ--TIVDIPEIFTGTSSTILIFLSIYSSIKNK 346
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 23.1 bits (48), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 156 VAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIMRGQS 208
+AH R L +LEKI +D + ++ + G + V I+S ++++G++
Sbjct: 362 IAHKTGARGLRSILEKILLDTMFELPMLKGVSSV--------IISDDVVKGKA 406
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,841
Number of Sequences: 1233
Number of extensions: 4809
Number of successful extensions: 20
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 212
length of database: 328,796
effective HSP length: 70
effective length of query: 142
effective length of database: 242,486
effective search space: 34433012
effective search space used: 34433012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)