HHsearch alignment for GI: 254780279 and conserved domain: COG0771
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=93.07 E-value=0.49 Score=27.22 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=62.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC--CCHHHHHCCCCEEEEEECCC
Q ss_conf 7379998998779999999983899789999964898020455366608754675455--68578521355047631010
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS--DNLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~--~dl~~~~~~~DViIDFT~P~ 82 (280)
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~--~~~~~~~---~~~~~i~~~~g~~~~~~~~~~d~vV--~SPG 78 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAP--EGLAAQP---LLLEGIEVELGSHDDEDLAEFDLVV--KSPG 78 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHC-CCEEEEECCCCCC--CCHHHHH---HHCCCCEEECCCCCHHCCCCCCEEE--ECCC
T ss_conf 99799992665109999999977-9869998389876--5323444---4203722313764110013477899--8999
Q ss_pred HH--HHHHHHHHHCCCEE---------------EEEECCCCHH--HHHHHHHHHCC--CCCEECCCHHHHH
Q ss_conf 24--78887643237215---------------7650222313--58999874035--5521000011568
Q gi|254780279|r 83 LT--LQSLNISAQHNIVH---------------IIGTTGFSVK--ENEVISSFARN--APIVKSSNMSLGI 132 (280)
Q Consensus 83 ~~--~~~~~~a~~~g~~v---------------ViGTTG~~~e--~~~~l~~~s~~--~~il~apN~SiGv 132 (280)
T Consensus 79 i~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~ 149 (448)
T COG0771 79 IPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA 149 (448)
T ss_pred CCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCH
T ss_conf 99988899999986993774888898744899989997999628899999999985599832135167137