HHsearch alignment for GI: 254780279 and conserved domain: COG0771

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=93.07  E-value=0.49  Score=27.22  Aligned_cols=120  Identities=17%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC--CCHHHHHCCCCEEEEEECCC
Q ss_conf             7379998998779999999983899789999964898020455366608754675455--68578521355047631010
Q gi|254780279|r    5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS--DNLAMAIQSVDGIIDFSSPA   82 (280)
Q Consensus         5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~--~dl~~~~~~~DViIDFT~P~   82 (280)
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~--~~~~~~~---~~~~~i~~~~g~~~~~~~~~~d~vV--~SPG   78 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAP--EGLAAQP---LLLEGIEVELGSHDDEDLAEFDLVV--KSPG   78 (448)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHC-CCEEEEECCCCCC--CCHHHHH---HHCCCCEEECCCCCHHCCCCCCEEE--ECCC
T ss_conf             99799992665109999999977-9869998389876--5323444---4203722313764110013477899--8999


Q ss_pred             HH--HHHHHHHHHCCCEE---------------EEEECCCCHH--HHHHHHHHHCC--CCCEECCCHHHHH
Q ss_conf             24--78887643237215---------------7650222313--58999874035--5521000011568
Q gi|254780279|r   83 LT--LQSLNISAQHNIVH---------------IIGTTGFSVK--ENEVISSFARN--APIVKSSNMSLGI  132 (280)
Q Consensus        83 ~~--~~~~~~a~~~g~~v---------------ViGTTG~~~e--~~~~l~~~s~~--~~il~apN~SiGv  132 (280)
T Consensus        79 i~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~  149 (448)
T COG0771          79 IPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA  149 (448)
T ss_pred             CCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCH
T ss_conf             99988899999986993774888898744899989997999628899999999985599832135167137