HHsearch alignment for GI: 254780279 and conserved domain: COG2344
>COG2344 AT-rich DNA-binding protein [General function prediction only].
Probab=97.39 E-value=0.00062 Score=47.07 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCEEEEEECCCHHHHHHHHHH-HHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEEC
Q ss_conf 873799989987799999999-83899789999964898020455366608754675455685785213--550476310
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEI-HNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSS 80 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i-~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~ 80 (280)
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~-~VG~~~~~------v~V~~~d~le~~v~~~dv~iaiL-tV 154 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPD-KVGTKIGD------VPVYDLDDLEKFVKKNDVEIAIL-TV 154 (211)
T ss_pred CCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHH-HHCCCCCC------EEEECHHHHHHHHHHCCCCEEEE-EC
T ss_conf 403489990570888986074233269359999617878-83752488------14552688888988617618999-73
Q ss_pred CC-HHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 10-2478887643237215765022231358
Q gi|254780279|r 81 PA-LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280)
Q Consensus 81 P~-~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280)
T Consensus 155 Pa~~AQ~vad~Lv~aGVkGIlN---FtPv~l 182 (211)
T COG2344 155 PAEHAQEVADRLVKAGVKGILN---FTPVRL 182 (211)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE---CCCEEE
T ss_conf 4898999999999838735884---263575