HHsearch alignment for GI: 254780279 and conserved domain: PRK01368

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.48  E-value=0.11  Score=31.77  Aligned_cols=123  Identities=23%  Similarity=0.272  Sum_probs=57.4

Q ss_pred             CCC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf             998-8737999899877999999998389978999996489802045536660875467545568578521355047631
Q gi|254780279|r    1 MHQ-SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS   79 (280)
Q Consensus         1 M~~-~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT   79 (280)
T Consensus         1 ~~~~~~K~v~V~GlG~sG~a~~~~L~~~--~~~~~~dd~~~~~----~~~~~~~~~-~~~~~~~~--~~~~~~d~iV--~   69 (450)
T PRK01368          1 MNSHTKQKIGVFGLGKTGISVYEELQNK--YDLIVYDDLKANR----DIFEELFSK-NAIIALSD--SRWQNLDKIV--L   69 (450)
T ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCCH----HHHHHHHCC-CCEECCCC--CCHHCCCEEE--E
T ss_conf             9766899089995878799999999719--9989998996564----789975214-83602571--1152199999--8


Q ss_pred             CCCHH--HHHHHHHHHCCCEE---------------EEEECCCCHH--HHHHHHHHHCC--CCCEECCCHHHHHHHHH
Q ss_conf             01024--78887643237215---------------7650222313--58999874035--55210000115689999
Q gi|254780279|r   80 SPALT--LQSLNISAQHNIVH---------------IIGTTGFSVK--ENEVISSFARN--APIVKSSNMSLGINFLG  136 (280)
Q Consensus        80 ~P~~~--~~~~~~a~~~g~~v---------------ViGTTG~~~e--~~~~l~~~s~~--~~il~apN~SiGv~ll~  136 (280)
T Consensus        70 SPGI~~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GN--IG~p~l~  145 (450)
T PRK01368         70 SPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGN--IGVPALQ  145 (450)
T ss_pred             CCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC--CCHHHHH
T ss_conf             996199899999999879958769999997667997799968999748999999999975996289625--5636652