HHsearch alignment for GI: 254780279 and conserved domain: PRK01368
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.48 E-value=0.11 Score=31.77 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=57.4
Q ss_pred CCC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 998-8737999899877999999998389978999996489802045536660875467545568578521355047631
Q gi|254780279|r 1 MHQ-SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 1 M~~-~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT 79 (280)
T Consensus 1 ~~~~~~K~v~V~GlG~sG~a~~~~L~~~--~~~~~~dd~~~~~----~~~~~~~~~-~~~~~~~~--~~~~~~d~iV--~ 69 (450)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQNK--YDLIVYDDLKANR----DIFEELFSK-NAIIALSD--SRWQNLDKIV--L 69 (450)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCCH----HHHHHHHCC-CCEECCCC--CCHHCCCEEE--E
T ss_conf 9766899089995878799999999719--9989998996564----789975214-83602571--1152199999--8
Q ss_pred CCCHH--HHHHHHHHHCCCEE---------------EEEECCCCHH--HHHHHHHHHCC--CCCEECCCHHHHHHHHH
Q ss_conf 01024--78887643237215---------------7650222313--58999874035--55210000115689999
Q gi|254780279|r 80 SPALT--LQSLNISAQHNIVH---------------IIGTTGFSVK--ENEVISSFARN--APIVKSSNMSLGINFLG 136 (280)
Q Consensus 80 ~P~~~--~~~~~~a~~~g~~v---------------ViGTTG~~~e--~~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280)
T Consensus 70 SPGI~~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GN--IG~p~l~ 145 (450)
T PRK01368 70 SPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGN--IGVPALQ 145 (450)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC--CCHHHHH
T ss_conf 996199899999999879958769999997667997799968999748999999999975996289625--5636652