HHsearch alignment for GI: 254780279 and conserved domain: PRK02006

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.67  E-value=0.044  Score=34.41  Aligned_cols=123  Identities=17%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-C-CCHHHHHCCCCEEEEEECCCH
Q ss_conf             37999899877999999998389978999996489802045536660875467545-5-685785213550476310102
Q gi|254780279|r    6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-S-DNLAMAIQSVDGIIDFSSPAL   83 (280)
Q Consensus         6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~-~dl~~~~~~~DViIDFT~P~~   83 (280)
T Consensus         8 k~vlV~GlG~sG~a~a~~L~~-~G~~V~~-~D~~~~~~---~~~~l~~~~-~~~~~~~g~~~~~~~~~~d~vV--~SPGI   79 (501)
T PRK02006          8 PMVLVLGLGESGLAMARWCAR-HGCRLRV-ADTREAPP---NLAALQAEG-IDAEFVGGAFDPALLDGVELVA--LSPGL   79 (501)
T ss_pred             CEEEEEEECHHHHHHHHHHHH-CCCEEEE-EECCCCCC---CHHHHHHCC-CCCEEECCCCCHHHHCCCCEEE--ECCEE
T ss_conf             839998336889999999997-8984999-98999986---199998608-9818977889867846899999--89900


Q ss_pred             ------HHHHHHHHHHCCCEE-----------------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHH
Q ss_conf             ------478887643237215-----------------------76502223135--8999874035--55210000115
Q gi|254780279|r   84 ------TLQSLNISAQHNIVH-----------------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSL  130 (280)
Q Consensus        84 ------~~~~~~~a~~~g~~v-----------------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~Si  130 (280)
T Consensus        80 ~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~~GNI--  157 (501)
T PRK02006         80 SPLEPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKVAVAGNI--  157 (501)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCC--
T ss_conf             888854319999999879958768999998876302223568748999389966879999999999769974652564--


Q ss_pred             HHHHHHHH
Q ss_conf             68999999
Q gi|254780279|r  131 GINFLGFL  138 (280)
Q Consensus       131 Gv~ll~~l  138 (280)
T Consensus       158 G~p~l~~l  165 (501)
T PRK02006        158 SPAALDKL  165 (501)
T ss_pred             CCHHHHHH
T ss_conf             61026778