HHsearch alignment for GI: 254780279 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.67 E-value=0.044 Score=34.41 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-C-CCHHHHHCCCCEEEEEECCCH
Q ss_conf 37999899877999999998389978999996489802045536660875467545-5-685785213550476310102
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-S-DNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~-~dl~~~~~~~DViIDFT~P~~ 83 (280)
T Consensus 8 k~vlV~GlG~sG~a~a~~L~~-~G~~V~~-~D~~~~~~---~~~~l~~~~-~~~~~~~g~~~~~~~~~~d~vV--~SPGI 79 (501)
T PRK02006 8 PMVLVLGLGESGLAMARWCAR-HGCRLRV-ADTREAPP---NLAALQAEG-IDAEFVGGAFDPALLDGVELVA--LSPGL 79 (501)
T ss_pred CEEEEEEECHHHHHHHHHHHH-CCCEEEE-EECCCCCC---CHHHHHHCC-CCCEEECCCCCHHHHCCCCEEE--ECCEE
T ss_conf 839998336889999999997-8984999-98999986---199998608-9818977889867846899999--89900
Q ss_pred ------HHHHHHHHHHCCCEE-----------------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHH
Q ss_conf ------478887643237215-----------------------76502223135--8999874035--55210000115
Q gi|254780279|r 84 ------TLQSLNISAQHNIVH-----------------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSL 130 (280)
Q Consensus 84 ------~~~~~~~a~~~g~~v-----------------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~Si 130 (280)
T Consensus 80 ~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~~GNI-- 157 (501)
T PRK02006 80 SPLEPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKVAVAGNI-- 157 (501)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCC--
T ss_conf 888854319999999879958768999998876302223568748999389966879999999999769974652564--
Q ss_pred HHHHHHHH
Q ss_conf 68999999
Q gi|254780279|r 131 GINFLGFL 138 (280)
Q Consensus 131 Gv~ll~~l 138 (280)
T Consensus 158 G~p~l~~l 165 (501)
T PRK02006 158 SPAALDKL 165 (501)
T ss_pred CCHHHHHH
T ss_conf 61026778