HHsearch alignment for GI: 254780279 and conserved domain: PRK03806

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.66  E-value=0.57  Score=26.79  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=46.4

Q ss_pred             CCCC-CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf             9988-737999899877999999998389978999996489802045536660875467545568578521355047631
Q gi|254780279|r    1 MHQS-PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS   79 (280)
Q Consensus         1 M~~~-~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT   79 (280)
T Consensus         1 ~~d~~~k~v~V~GlG~sG~s~~~~L~~-~G~~v~~~-D~~~~~~~~~~l~~-----~~~~~~g~~~~~~~~~~d~vV--~   71 (438)
T PRK03806          1 MADYQGKNVVIIGLGLTGLSCVDFFLA-RGVTPRVM-DTRMTPPGLDKLPE-----NVERHTGSLNDEWLLAADLIV--A   71 (438)
T ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHH-CCCEEEEE-ECCCCCHHHHHHHC-----CCCEEECCCCHHHHCCCCEEE--E
T ss_conf             977789989999457888999999997-89969999-89999005788645-----884665777966806799999--8


Q ss_pred             CCCHH--HHHHHHHHHCCCEE
Q ss_conf             01024--78887643237215
Q gi|254780279|r   80 SPALT--LQSLNISAQHNIVH   98 (280)
Q Consensus        80 ~P~~~--~~~~~~a~~~g~~v   98 (280)
T Consensus        72 SPGI~~~~p~~~~a~~~~i~i   92 (438)
T PRK03806         72 SPGIALAHPSLSAAADAGVEI   92 (438)
T ss_pred             CCCCCCCCHHHHHHHHCCCCE
T ss_conf             997899898999999879947