HHsearch alignment for GI: 254780279 and conserved domain: PRK04690

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.64  E-value=0.046  Score=34.25  Aligned_cols=122  Identities=16%  Similarity=0.277  Sum_probs=67.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHHHCCCCEEEEEECCCHH
Q ss_conf             379998998779999999983899789999964898020455366608754675455-6857852135504763101024
Q gi|254780279|r    6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMAIQSVDGIIDFSSPALT   84 (280)
Q Consensus         6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~~~~~DViIDFT~P~~~   84 (280)
T Consensus         9 kkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~l~~~d~vv--~SPGi~   80 (468)
T PRK04690          9 KRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEV---REVGAL---ADAALLVETEASAQRLAAFEVVV--KSPGIS   80 (468)
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCC---HHHHHH---CCCCCEEECCCCHHHHHCCCEEE--ECCCCC
T ss_conf             9799983478799999999966990499972883246---466762---04575674677855761488999--899579


Q ss_pred             --HHHHHHHHHCCCEE--------------------EEEECCCCHHH--HHHHHHHHC--CCCCEECCCHHHHHHHHHH
Q ss_conf             --78887643237215--------------------76502223135--899987403--5552100001156899999
Q gi|254780279|r   85 --LQSLNISAQHNIVH--------------------IIGTTGFSVKE--NEVISSFAR--NAPIVKSSNMSLGINFLGF  137 (280)
Q Consensus        85 --~~~~~~a~~~g~~v--------------------ViGTTG~~~e~--~~~l~~~s~--~~~il~apN~SiGv~ll~~  137 (280)
T Consensus        81 ~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GN--IG~P~~~~  157 (468)
T PRK04690         81 PYRPEALAAAAQGTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN--IGQPLLEV  157 (468)
T ss_pred             CCCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC--CCHHHHHH
T ss_conf             868999999987994886899999875311256787899969985899999999999857998289867--76446765