HHsearch alignment for GI: 254780279 and conserved domain: PRK04690
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.64 E-value=0.046 Score=34.25 Aligned_cols=122 Identities=16% Similarity=0.277 Sum_probs=67.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHHHCCCCEEEEEECCCHH
Q ss_conf 379998998779999999983899789999964898020455366608754675455-6857852135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~~~~~DViIDFT~P~~~ 84 (280)
T Consensus 9 kkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~l~~~d~vv--~SPGi~ 80 (468)
T PRK04690 9 KRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEV---REVGAL---ADAALLVETEASAQRLAAFEVVV--KSPGIS 80 (468)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCC---HHHHHH---CCCCCEEECCCCHHHHHCCCEEE--ECCCCC
T ss_conf 9799983478799999999966990499972883246---466762---04575674677855761488999--899579
Q ss_pred --HHHHHHHHHCCCEE--------------------EEEECCCCHHH--HHHHHHHHC--CCCCEECCCHHHHHHHHHH
Q ss_conf --78887643237215--------------------76502223135--899987403--5552100001156899999
Q gi|254780279|r 85 --LQSLNISAQHNIVH--------------------IIGTTGFSVKE--NEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280)
Q Consensus 85 --~~~~~~a~~~g~~v--------------------ViGTTG~~~e~--~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280)
T Consensus 81 ~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GN--IG~P~~~~ 157 (468)
T PRK04690 81 PYRPEALAAAAQGTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN--IGQPLLEV 157 (468)
T ss_pred CCCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC--CCHHHHHH
T ss_conf 868999999987994886899999875311256787899969985899999999999857998289867--76446765