HHsearch alignment for GI: 254780279 and conserved domain: PRK11154
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=94.34 E-value=0.084 Score=32.48 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=74.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HC-----CCHHHHCC---C-------CCCCCCCCCCHHHHHC
Q ss_conf 7999899877999999998389978999996489802-04-----55366608---7-------5467545568578521
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-IG-----QDVGNFVG---I-------SPMGIKFSDNLAMAIQ 70 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-~g-----~d~~~~~~---~-------~~~~v~i~~dl~~~~~ 70 (280)
T Consensus 311 kv~ViGaG~MG~gIA~~~a~~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~-~~~ 388 (706)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVR-IKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYR-GFK 388 (706)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHH-HHC
T ss_conf 799986473238999999998698799-997999999999998899999998618999899999862241004412-315
Q ss_pred CCCEEEEEEC------------------CC-------HHHHHHHHHHHCCCE----------------E--EEEECCCCH
Q ss_conf 3550476310------------------10-------247888764323721----------------5--765022231
Q gi|254780279|r 71 SVDGIIDFSS------------------PA-------LTLQSLNISAQHNIV----------------H--IIGTTGFSV 107 (280)
Q Consensus 71 ~~DViIDFT~------------------P~-------~~~~~~~~a~~~g~~----------------v--ViGTTG~~~ 107 (280)
T Consensus 389 ~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~i~~la~~~~rP~r~iG~HFfnP~~~m~LVEVi~g~~Ts~ 468 (706)
T PRK11154 389 HADLVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSA 468 (706)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCH
T ss_conf 68879997145288899999999964798858950676776899998647841045544257744264279943789838
Q ss_pred HHHHHHHHHHC---CCCCEE--CCCHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 35899987403---555210--000115689-9999999999861156660089999864167899867
Q gi|254780279|r 108 KENEVISSFAR---NAPIVK--SSNMSLGIN-FLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSG 170 (280)
Q Consensus 108 e~~~~l~~~s~---~~~il~--apN~SiGv~-ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSG 170 (280)
T Consensus 469 et~~~~~~~~~~lgK~pv~v~d~pGFi--~NRil~~~~~ea~~l~~e--G~~~~~ID~a~-~~~G~pmG 532 (706)
T PRK11154 469 ETIATTVALAKKQGKTPIVVKDGAGFY--VNRILAPYMNEAARLLLE--GEPIEHIDAAL-VKFGFPVG 532 (706)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCH--HHHHHHHHHHHHHHHHHC--CCCHHHHHHHH-HHCCCCCC
T ss_conf 999999999997598789963237417--999999999999999976--99999999999-97599878