HHsearch alignment for GI: 254780279 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=90.13 E-value=1.6 Score=23.69 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=54.7
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-----CCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 37999899-8779999999983899789999964898020455366608754-----67545568578521355047631
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-----MGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-----~~v~i~~dl~~~~~~~DViIDFT 79 (280)
T Consensus 5 K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~--~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~vD~VfHaA 82 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW--EMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA 82 (324)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH--HHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECC
T ss_conf 9999907977999999999997299828999668640328--89851689875999677778899997634888999946
Q ss_pred C----------C--------CHHHHHHHHHHHCCCEEEE-EEC
Q ss_conf 0----------1--------0247888764323721576-502
Q gi|254780279|r 80 S----------P--------ALTLQSLNISAQHNIVHII-GTT 103 (280)
Q Consensus 80 ~----------P--------~~~~~~~~~a~~~g~~vVi-GTT 103 (280)
T Consensus 83 A~khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iST 125 (324)
T TIGR03589 83 ALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 2776726776989999999799999999988555431786226