HHsearch alignment for GI: 254780279 and conserved domain: cd00755
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.64 E-value=0.07 Score=33.04 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=57.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----CCCCC------CCCCC
Q ss_conf 379998998779999999983899789999964898-------------0204553666-----08754------67545
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----VGISP------MGIKF 61 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----~~~~~------~~v~i 61 (280)
T Consensus 12 s~V~v~G~GGvGs~~a~~Lars-GVG~l~lvD~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~~~~~~ 90 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEEHHHC
T ss_conf 9789988863689999999980-997599971999045444433016563369972899999999879998899862515
Q ss_pred -CCCHHHHHC-CCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEE
Q ss_conf -568578521-355047631-0102478887643237215765
Q gi|254780279|r 62 -SDNLAMAIQ-SVDGIIDFS-SPALTLQSLNISAQHNIVHIIG 101 (280)
Q Consensus 62 -~~dl~~~~~-~~DViIDFT-~P~~~~~~~~~a~~~g~~vViG 101 (280)
T Consensus 91 ~~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~~iplIss 133 (231)
T cd00755 91 TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred CHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9989999845477778534424877999999999829908998