Query gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 280
No_of_seqs 167 out of 2132
Neff 6.9
Searched_HMMs 39220
Date Tue May 24 14:27:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780279.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00036 dapB dihydrodipicoli 100.0 0 0 625.6 22.9 265 5-272 1-281 (281)
2 COG0289 DapB Dihydrodipicolina 100.0 0 0 599.0 25.2 265 4-271 1-266 (266)
3 PRK00048 dihydrodipicolinate r 100.0 0 0 589.2 23.5 263 5-270 2-265 (265)
4 pfam05173 DapB_C Dihydrodipico 100.0 5.3E-42 0 307.7 11.8 136 131-269 1-137 (137)
5 pfam01113 DapB_N Dihydrodipico 100.0 5.2E-30 1.3E-34 225.6 11.8 121 6-128 1-122 (122)
6 TIGR02130 dapB_plant dihydrodi 100.0 9.2E-29 2.4E-33 217.1 9.9 254 6-272 1-272 (275)
7 PRK13302 putative L-aspartate 99.1 1.1E-09 2.7E-14 86.6 10.6 124 1-131 1-127 (271)
8 PRK13303 L-aspartate dehydroge 99.1 2.6E-09 6.6E-14 83.9 11.4 233 5-258 1-259 (265)
9 PRK13304 L-aspartate dehydroge 99.1 2E-09 5E-14 84.7 10.2 230 5-258 1-257 (265)
10 PRK11579 putative oxidoreducta 99.0 3.8E-09 9.7E-14 82.8 11.2 118 1-128 1-122 (346)
11 COG4091 Predicted homoserine d 99.0 1.8E-09 4.7E-14 84.9 9.0 141 3-143 15-174 (438)
12 PRK04207 glyceraldehyde-3-phos 99.0 1.5E-09 3.7E-14 85.6 7.7 96 5-100 2-108 (338)
13 pfam01408 GFO_IDH_MocA Oxidore 98.8 4.2E-08 1.1E-12 75.6 8.8 115 6-127 1-119 (120)
14 COG1712 Predicted dinucleotide 98.8 5.4E-08 1.4E-12 74.9 9.3 120 6-132 1-124 (255)
15 PRK08374 homoserine dehydrogen 98.8 5.7E-08 1.4E-12 74.7 9.4 131 5-135 2-150 (316)
16 TIGR01921 DAP-DH diaminopimela 98.7 6.2E-08 1.6E-12 74.5 8.6 241 4-268 2-308 (326)
17 pfam03435 Saccharop_dh Sacchar 98.7 6.7E-08 1.7E-12 74.2 8.2 156 8-171 1-167 (384)
18 PRK06349 homoserine dehydrogen 98.7 2.5E-07 6.4E-12 70.3 10.6 126 4-137 2-141 (432)
19 COG1748 LYS9 Saccharopine dehy 98.7 1.6E-07 4.1E-12 71.6 8.4 239 5-264 1-258 (389)
20 PRK06270 homoserine dehydrogen 98.6 3.7E-07 9.5E-12 69.1 9.4 132 5-136 2-161 (342)
21 COG0673 MviM Predicted dehydro 98.6 1.2E-06 3.2E-11 65.5 11.8 122 4-131 2-130 (342)
22 pfam03447 NAD_binding_3 Homose 98.6 4E-07 1E-11 69.0 8.9 104 12-122 1-111 (116)
23 PRK13301 putative L-aspartate 98.6 7.6E-07 1.9E-11 67.0 10.1 122 5-135 2-130 (267)
24 PRK10206 putative dehydrogenas 98.5 1.7E-06 4.3E-11 64.6 10.9 116 5-126 2-121 (345)
25 COG3804 Uncharacterized conser 98.5 9.9E-07 2.5E-11 66.2 8.7 114 5-121 2-123 (350)
26 PRK06813 homoserine dehydrogen 98.5 1.3E-06 3.2E-11 65.5 9.1 131 5-135 2-157 (341)
27 PRK06392 homoserine dehydrogen 98.4 2.2E-06 5.6E-11 63.9 9.2 134 6-140 1-155 (326)
28 pfam01210 NAD_Gly3P_dh_N NAD-d 98.4 2.1E-06 5.4E-11 64.0 9.0 126 6-133 1-141 (159)
29 PRK00094 gpsA NAD(P)H-dependen 98.4 3E-06 7.6E-11 62.9 8.3 140 5-147 1-168 (325)
30 COG0460 ThrA Homoserine dehydr 98.3 4.7E-06 1.2E-10 61.6 9.0 133 4-137 2-150 (333)
31 TIGR01546 GAPDH-II_archae glyc 98.3 5.5E-07 1.4E-11 68.0 3.7 92 8-99 1-104 (335)
32 KOG2741 consensus 98.3 1.2E-05 3.1E-10 58.8 10.3 135 1-140 1-146 (351)
33 PRK12491 pyrroline-5-carboxyla 98.3 1.7E-05 4.3E-10 57.8 10.8 118 1-130 1-124 (272)
34 PRK07679 pyrroline-5-carboxyla 98.3 1.4E-05 3.6E-10 58.3 10.0 122 4-133 2-129 (279)
35 PRK07634 pyrroline-5-carboxyla 98.3 1.9E-05 4.8E-10 57.5 10.5 121 1-130 1-126 (245)
36 PRK11880 pyrroline-5-carboxyla 98.2 1.6E-05 4E-10 58.0 9.9 120 5-133 2-124 (267)
37 COG0057 GapA Glyceraldehyde-3- 98.2 4.5E-06 1.1E-10 61.7 6.9 194 5-225 1-246 (335)
38 PRK07680 late competence prote 98.2 1.5E-05 3.8E-10 58.2 9.2 115 6-130 1-121 (273)
39 PRK08664 aspartate-semialdehyd 98.2 1.9E-05 4.9E-10 57.4 9.7 99 4-105 2-110 (350)
40 PRK06728 aspartate-semialdehyd 98.2 8E-06 2E-10 60.0 7.5 125 1-132 1-136 (347)
41 pfam01118 Semialdhyde_dh Semia 98.2 1.1E-05 2.8E-10 59.0 8.1 97 7-105 1-100 (121)
42 COG0240 GpsA Glycerol-3-phosph 98.2 2.6E-05 6.7E-10 56.5 9.8 164 5-185 1-204 (329)
43 COG0345 ProC Pyrroline-5-carbo 98.2 4.7E-05 1.2E-09 54.8 11.1 116 5-130 1-121 (266)
44 PRK12439 NAD(P)H-dependent gly 98.1 2.6E-05 6.6E-10 56.5 9.4 170 3-185 4-209 (340)
45 PRK06476 pyrroline-5-carboxyla 98.1 2.6E-05 6.7E-10 56.5 9.4 119 6-132 1-122 (255)
46 TIGR03376 glycerol3P_DH glycer 98.1 3.2E-05 8.1E-10 55.9 9.7 168 7-185 1-220 (342)
47 PRK06928 pyrroline-5-carboxyla 98.1 5.6E-05 1.4E-09 54.2 9.9 117 6-132 2-124 (275)
48 pfam00044 Gp_dh_N Glyceraldehy 98.1 1.7E-05 4.4E-10 57.7 7.0 34 6-39 1-34 (150)
49 smart00846 Gp_dh_N Glyceraldeh 98.0 1.6E-05 4.2E-10 57.9 6.8 34 6-39 1-34 (149)
50 PRK05678 succinyl-CoA syntheta 98.0 0.00013 3.3E-09 51.7 10.7 117 3-132 6-127 (289)
51 TIGR01850 argC N-acetyl-gamma- 98.0 4.1E-05 1.1E-09 55.1 8.0 191 6-217 1-209 (361)
52 PTZ00023 glyceraldehyde-3-phos 98.0 3.4E-05 8.6E-10 55.7 7.3 189 5-217 2-240 (337)
53 PRK08955 glyceraldehyde-3-phos 98.0 3.2E-05 8.1E-10 55.9 7.0 140 5-146 2-168 (333)
54 PRK05671 aspartate-semialdehyd 97.9 4.7E-05 1.2E-09 54.8 7.4 121 1-131 1-134 (336)
55 TIGR00978 asd_EA aspartate-sem 97.9 7.2E-05 1.8E-09 53.5 8.3 213 6-232 1-260 (358)
56 PRK07729 glyceraldehyde-3-phos 97.9 0.00024 6.1E-09 49.9 10.6 141 5-147 2-169 (343)
57 PRK08300 acetaldehyde dehydrog 97.9 9.8E-05 2.5E-09 52.6 8.2 93 1-100 1-99 (298)
58 COG0002 ArgC Acetylglutamate s 97.9 0.00015 3.8E-09 51.4 8.9 98 5-105 2-104 (349)
59 PRK00436 argC N-acetyl-gamma-g 97.9 0.00015 3.8E-09 51.3 8.9 97 5-105 1-102 (345)
60 pfam02629 CoA_binding CoA bind 97.8 0.00013 3.2E-09 51.8 8.3 89 5-102 3-93 (96)
61 pfam03446 NAD_binding_2 NAD bi 97.8 8.2E-05 2.1E-09 53.1 7.4 101 6-117 2-109 (163)
62 PRK11559 garR tartronate semia 97.8 0.00013 3.4E-09 51.7 8.3 155 5-179 1-176 (295)
63 PRK13535 erythrose 4-phosphate 97.7 0.00012 3E-09 52.0 6.6 134 5-146 1-170 (336)
64 PRK07403 glyceraldehyde-3-phos 97.7 0.00013 3.3E-09 51.8 6.6 139 5-146 1-170 (337)
65 TIGR03215 ac_ald_DH_ac acetald 97.7 0.00027 6.9E-09 49.5 8.0 90 5-100 1-93 (285)
66 PRK09436 thrA bifunctional asp 97.7 0.00042 1.1E-08 48.2 8.8 137 3-142 463-623 (817)
67 COG0136 Asd Aspartate-semialde 97.6 0.0013 3.3E-08 44.9 10.9 121 5-132 1-137 (334)
68 pfam03807 F420_oxidored NADP o 97.6 0.00038 9.8E-09 48.5 7.4 90 7-104 1-93 (93)
69 PRK09466 metL bifunctional asp 97.5 0.0015 3.9E-08 44.4 10.2 135 3-139 456-614 (810)
70 PRK08040 putative semialdehyde 97.5 0.0004 1E-08 48.4 7.2 122 1-132 1-136 (337)
71 COG0074 SucD Succinyl-CoA synt 97.5 0.00059 1.5E-08 47.2 7.9 112 4-127 7-123 (293)
72 pfam00899 ThiF ThiF family. Th 97.5 0.00046 1.2E-08 48.0 7.2 99 7-106 3-128 (134)
73 smart00859 Semialdhyde_dh Semi 97.5 0.00081 2.1E-08 46.3 8.3 97 7-105 1-102 (122)
74 PRK06129 3-hydroxyacyl-CoA deh 97.5 0.00084 2.1E-08 46.2 7.9 105 5-111 1-127 (308)
75 PRK06598 aspartate-semialdehyd 97.4 0.001 2.6E-08 45.6 8.1 119 5-132 2-134 (348)
76 PRK11863 N-acetyl-gamma-glutam 97.4 0.00095 2.4E-08 45.8 7.9 80 5-103 2-82 (314)
77 PRK05472 redox-sensing transcr 97.4 0.0011 2.8E-08 45.4 7.9 116 3-135 82-202 (211)
78 PRK08507 prephenate dehydrogen 97.4 0.0011 2.9E-08 45.3 7.9 96 6-109 1-96 (275)
79 COG2344 AT-rich DNA-binding pr 97.4 0.00062 1.6E-08 47.1 6.6 96 4-110 83-182 (211)
80 PTZ00187 succinyl-CoA syntheta 97.4 0.0041 1E-07 41.5 10.7 113 4-128 22-140 (309)
81 PTZ00142 6-phosphogluconate de 97.4 0.001 2.7E-08 45.5 7.6 102 1-104 1-133 (474)
82 PRK08293 3-hydroxybutyryl-CoA 97.3 0.0021 5.5E-08 43.4 8.8 101 7-109 5-127 (288)
83 CHL00194 ycf39 Ycf39; Provisio 97.3 0.002 5E-08 43.6 8.4 98 6-108 1-114 (319)
84 TIGR02717 AcCoA-syn-alpha acet 97.3 0.0015 3.8E-08 44.5 7.6 132 4-147 6-151 (457)
85 pfam03721 UDPG_MGDP_dh_N UDP-g 97.3 0.0042 1.1E-07 41.4 9.7 69 6-76 1-80 (185)
86 cd00757 ThiF_MoeB_HesA_family 97.2 0.0021 5.3E-08 43.5 7.9 100 6-106 22-148 (228)
87 PRK12475 thiamine/molybdopteri 97.2 0.0017 4.3E-08 44.1 7.4 100 6-106 25-153 (337)
88 PRK06130 3-hydroxybutyryl-CoA 97.2 0.002 5.2E-08 43.5 7.8 76 1-79 1-86 (310)
89 PRK09260 3-hydroxybutyryl-CoA 97.2 0.0024 6E-08 43.1 7.9 99 7-107 4-123 (289)
90 cd05292 LDH_2 A subgroup of L- 97.2 0.0035 8.8E-08 42.0 8.8 70 6-76 1-72 (308)
91 PRK12490 6-phosphogluconate de 97.2 0.0032 8.1E-08 42.2 8.5 92 6-99 1-116 (298)
92 PRK07531 bifunctional 3-hydrox 97.2 0.0046 1.2E-07 41.1 9.3 104 6-111 3-123 (489)
93 cd05291 HicDH_like L-2-hydroxy 97.2 0.0023 5.9E-08 43.2 7.7 126 7-143 2-131 (306)
94 PRK07502 cyclohexadienyl dehyd 97.2 0.0022 5.6E-08 43.3 7.5 103 1-109 1-105 (307)
95 PRK07688 thiamine/molybdopteri 97.1 0.0023 5.7E-08 43.2 7.2 100 6-106 25-153 (339)
96 pfam01488 Shikimate_DH Shikima 97.1 0.0016 4.1E-08 44.3 6.4 78 5-85 12-90 (134)
97 cd01483 E1_enzyme_family Super 97.1 0.0028 7.3E-08 42.5 7.5 99 7-106 1-126 (143)
98 PRK05442 malate dehydrogenase; 97.1 0.0091 2.3E-07 39.1 10.0 74 1-76 1-85 (325)
99 PRK08655 prephenate dehydrogen 97.1 0.0069 1.8E-07 39.9 9.4 75 6-89 1-76 (441)
100 PRK07411 hypothetical protein; 97.1 0.0029 7.4E-08 42.5 7.4 99 7-106 40-165 (390)
101 PRK07878 molybdopterin biosynt 97.1 0.0031 7.8E-08 42.3 7.4 99 7-106 44-169 (392)
102 PRK05690 molybdopterin biosynt 97.1 0.0031 7.9E-08 42.3 7.4 96 7-103 34-155 (245)
103 PRK05597 molybdopterin biosynt 97.1 0.004 1E-07 41.5 7.9 99 7-106 30-155 (355)
104 PRK09599 6-phosphogluconate de 97.1 0.0061 1.6E-07 40.3 8.8 92 6-99 1-116 (301)
105 PRK08328 hypothetical protein; 97.1 0.0029 7.4E-08 42.5 7.1 99 7-106 29-155 (230)
106 PRK05808 3-hydroxybutyryl-CoA 97.0 0.0051 1.3E-07 40.8 8.3 101 7-110 5-126 (282)
107 cd01492 Aos1_SUMO Ubiquitin ac 97.0 0.0035 9E-08 41.9 7.3 101 6-107 22-148 (197)
108 PTZ00325 malate dehydrogenase; 97.0 0.012 3E-07 38.4 9.9 71 6-76 2-73 (313)
109 TIGR03026 NDP-sugDHase nucleot 97.0 0.0088 2.2E-07 39.2 9.3 122 6-129 1-156 (411)
110 PRK08762 molybdopterin biosynt 97.0 0.0027 6.8E-08 42.8 6.5 99 7-106 140-265 (379)
111 PRK05600 thiamine biosynthesis 97.0 0.004 1E-07 41.5 7.4 99 7-106 43-168 (370)
112 TIGR03450 mycothiol_INO1 inosi 97.0 0.0084 2.1E-07 39.3 8.8 238 6-258 1-317 (351)
113 PRK07660 consensus 96.9 0.0081 2.1E-07 39.5 8.5 102 7-111 5-127 (283)
114 PRK07066 3-hydroxybutyryl-CoA 96.9 0.0067 1.7E-07 40.0 8.0 105 5-111 6-128 (321)
115 COG1064 AdhP Zn-dependent alco 96.9 0.0097 2.5E-07 38.9 8.9 134 6-146 168-303 (339)
116 PRK09117 consensus 96.9 0.0063 1.6E-07 40.2 7.9 98 7-107 4-122 (282)
117 PRK06223 malate dehydrogenase; 96.9 0.0038 9.6E-08 41.7 6.6 70 6-76 1-74 (312)
118 PRK09496 trkA potassium transp 96.9 0.0067 1.7E-07 40.0 7.9 126 6-136 1-135 (455)
119 cd01338 MDH_choloroplast_like 96.9 0.012 3.1E-07 38.2 9.1 124 4-139 1-138 (322)
120 cd01337 MDH_glyoxysomal_mitoch 96.9 0.017 4.3E-07 37.3 9.6 44 6-49 1-45 (310)
121 KOG2711 consensus 96.8 0.019 4.9E-07 36.9 9.8 129 3-133 19-179 (372)
122 pfam02737 3HCDH_N 3-hydroxyacy 96.8 0.0079 2E-07 39.5 7.8 102 7-111 1-123 (180)
123 PRK00045 hemA glutamyl-tRNA re 96.8 0.0047 1.2E-07 41.1 6.6 90 5-100 182-276 (429)
124 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0047 1.2E-07 41.0 6.5 93 6-102 186-291 (436)
125 pfam00056 Ldh_1_N lactate/mala 96.8 0.0057 1.5E-07 40.5 6.9 128 6-144 1-133 (142)
126 cd01485 E1-1_like Ubiquitin ac 96.8 0.011 2.9E-07 38.4 8.3 99 7-106 21-150 (198)
127 PRK07530 3-hydroxybutyryl-CoA 96.8 0.014 3.5E-07 37.9 8.6 107 1-111 1-128 (292)
128 PRK07417 arogenate dehydrogena 96.7 0.0082 2.1E-07 39.4 7.3 81 5-94 1-81 (280)
129 cd01336 MDH_cytoplasmic_cytoso 96.7 0.013 3.3E-07 38.0 8.3 71 4-76 1-83 (325)
130 PRK00066 ldh L-lactate dehydro 96.7 0.018 4.5E-07 37.1 8.5 75 1-77 2-79 (315)
131 cd05293 LDH_1 A subgroup of L- 96.6 0.02 5.1E-07 36.8 8.7 71 5-76 3-76 (312)
132 TIGR00715 precor6x_red precorr 96.6 0.015 3.7E-07 37.7 8.0 91 6-100 1-99 (260)
133 PRK04690 murD UDP-N-acetylmura 96.6 0.046 1.2E-06 34.2 10.6 122 6-137 9-157 (468)
134 PRK07819 3-hydroxybutyryl-CoA 96.6 0.016 4E-07 37.5 7.9 101 7-110 4-126 (284)
135 KOG1255 consensus 96.6 0.012 3.1E-07 38.2 7.3 115 3-129 36-156 (329)
136 PRK09880 L-idonate 5-dehydroge 96.5 0.029 7.5E-07 35.6 8.9 117 7-128 172-292 (343)
137 COG0287 TyrA Prephenate dehydr 96.5 0.037 9.3E-07 35.0 9.3 106 4-117 2-112 (279)
138 COG2910 Putative NADH-flavin r 96.5 0.0063 1.6E-07 40.2 5.4 70 6-80 1-71 (211)
139 cd01487 E1_ThiF_like E1_ThiF_l 96.5 0.011 2.8E-07 38.5 6.4 95 7-102 1-121 (174)
140 PRK06035 3-hydroxyacyl-CoA deh 96.5 0.023 5.8E-07 36.4 8.0 101 7-110 5-129 (291)
141 PRK00141 murD UDP-N-acetylmura 96.4 0.02 5E-07 36.8 7.5 84 7-99 19-104 (476)
142 PRK08268 3-hydroxybutyryl-CoA 96.4 0.017 4.4E-07 37.2 7.2 71 5-78 2-89 (503)
143 PRK08644 thiamine biosynthesis 96.4 0.011 2.9E-07 38.4 6.1 100 7-107 29-156 (209)
144 cd01489 Uba2_SUMO Ubiquitin ac 96.4 0.018 4.6E-07 37.1 7.1 100 7-107 1-128 (312)
145 COG0569 TrkA K+ transport syst 96.4 0.046 1.2E-06 34.2 9.2 129 6-140 1-134 (225)
146 TIGR02356 adenyl_thiF thiazole 96.4 0.014 3.5E-07 37.9 6.4 99 7-106 23-152 (210)
147 PRK05086 malate dehydrogenase; 96.4 0.049 1.2E-06 34.1 9.2 106 6-111 1-155 (312)
148 cd00300 LDH_like L-lactate deh 96.3 0.024 6.1E-07 36.2 7.5 124 8-143 1-129 (300)
149 TIGR03451 mycoS_dep_FDH mycoth 96.3 0.035 8.9E-07 35.1 8.3 93 7-103 179-278 (358)
150 PTZ00082 L-lactate dehydrogena 96.3 0.044 1.1E-06 34.4 8.8 126 5-143 7-143 (322)
151 PRK06545 prephenate dehydrogen 96.3 0.037 9.6E-07 34.9 8.4 95 7-108 2-97 (357)
152 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.016 4.2E-07 37.3 6.6 73 5-83 178-251 (311)
153 pfam02423 OCD_Mu_crystall Orni 96.3 0.017 4.3E-07 37.2 6.5 101 6-109 130-232 (312)
154 cd01484 E1-2_like Ubiquitin ac 96.3 0.027 6.9E-07 35.9 7.5 100 7-107 1-129 (234)
155 KOG0172 consensus 96.2 0.0091 2.3E-07 39.1 5.0 111 7-123 4-118 (445)
156 KOG1502 consensus 96.2 0.066 1.7E-06 33.2 9.3 99 1-100 1-126 (327)
157 COG0373 HemA Glutamyl-tRNA red 96.2 0.022 5.5E-07 36.5 6.8 86 6-97 179-267 (414)
158 cd00704 MDH Malate dehydrogena 96.2 0.033 8.3E-07 35.3 7.6 71 6-76 1-81 (323)
159 PRK08223 hypothetical protein; 96.2 0.03 7.5E-07 35.6 7.3 100 6-106 28-156 (287)
160 cd05294 LDH-like_MDH_nadp A la 96.2 0.029 7.3E-07 35.7 7.2 70 6-76 1-77 (309)
161 PRK13940 glutamyl-tRNA reducta 96.1 0.024 6E-07 36.3 6.6 87 6-100 182-269 (414)
162 PRK11908 NAD-dependent epimera 96.1 0.034 8.6E-07 35.2 7.3 92 7-104 3-119 (347)
163 cd00650 LDH_MDH_like NAD-depen 96.1 0.047 1.2E-06 34.2 7.9 123 8-142 1-132 (263)
164 COG1810 Uncharacterized protei 96.1 0.066 1.7E-06 33.2 8.7 149 5-180 1-169 (224)
165 TIGR03466 HpnA hopanoid-associ 96.0 0.037 9.4E-07 34.9 7.3 93 6-103 1-113 (328)
166 PRK10083 putative dehydrogenas 96.0 0.039 1E-06 34.7 7.2 130 7-143 163-297 (339)
167 TIGR03366 HpnZ_proposed putati 96.0 0.04 1E-06 34.7 7.2 130 7-144 123-260 (280)
168 pfam02593 DUF166 Uncharacteriz 95.9 0.039 1E-06 34.8 7.0 151 10-180 2-163 (215)
169 PRK03369 murD UDP-N-acetylmura 95.9 0.093 2.4E-06 32.2 9.0 118 7-137 14-159 (487)
170 COG1023 Gnd Predicted 6-phosph 95.9 0.011 2.8E-07 38.5 4.1 97 6-104 1-122 (300)
171 PRK06199 ornithine cyclodeamin 95.9 0.021 5.4E-07 36.6 5.4 91 7-99 157-256 (379)
172 COG2084 MmsB 3-hydroxyisobutyr 95.9 0.091 2.3E-06 32.3 8.6 62 6-76 1-62 (286)
173 KOG2380 consensus 95.8 0.08 2E-06 32.6 8.3 75 4-89 51-126 (480)
174 PRK03562 glutathione-regulated 95.8 0.18 4.7E-06 30.2 12.3 153 5-169 399-567 (615)
175 pfam05368 NmrA NmrA-like famil 95.8 0.048 1.2E-06 34.2 7.0 91 8-101 1-100 (232)
176 TIGR01534 GAPDH-I glyceraldehy 95.8 0.011 2.7E-07 38.6 3.6 100 7-107 1-120 (366)
177 PRK06249 2-dehydropantoate 2-r 95.8 0.043 1.1E-06 34.5 6.7 104 1-107 1-111 (313)
178 PTZ00117 malate dehydrogenase; 95.7 0.13 3.4E-06 31.1 9.0 68 7-76 3-74 (313)
179 COG1004 Ugd Predicted UDP-gluc 95.7 0.14 3.6E-06 31.0 9.0 121 6-128 1-151 (414)
180 PRK01710 murD UDP-N-acetylmura 95.7 0.071 1.8E-06 33.0 7.5 122 7-137 16-159 (458)
181 COG1063 Tdh Threonine dehydrog 95.7 0.15 3.9E-06 30.7 9.2 116 7-125 171-293 (350)
182 PRK02006 murD UDP-N-acetylmura 95.7 0.044 1.1E-06 34.4 6.4 123 6-138 8-165 (501)
183 TIGR01532 E4PD_g-proteo D-eryt 95.7 0.0062 1.6E-07 40.2 2.0 203 7-217 1-245 (334)
184 cd00755 YgdL_like Family of ac 95.6 0.07 1.8E-06 33.0 7.3 95 6-101 12-133 (231)
185 cd01339 LDH-like_MDH L-lactate 95.6 0.1 2.6E-06 31.9 8.0 123 8-143 1-129 (300)
186 COG5495 Uncharacterized conser 95.5 0.053 1.4E-06 33.8 6.4 116 4-131 9-127 (289)
187 PRK01368 murD UDP-N-acetylmura 95.5 0.11 2.7E-06 31.8 7.8 123 1-136 1-145 (450)
188 COG2085 Predicted dinucleotide 95.5 0.13 3.4E-06 31.1 8.2 92 5-104 1-95 (211)
189 COG1091 RfbD dTDP-4-dehydrorha 95.5 0.063 1.6E-06 33.3 6.5 81 6-105 1-102 (281)
190 PRK06407 ornithine cyclodeamin 95.4 0.037 9.5E-07 34.9 5.4 95 6-103 119-215 (302)
191 PRK04663 murD UDP-N-acetylmura 95.4 0.097 2.5E-06 32.1 7.3 118 7-136 9-149 (438)
192 PRK06823 ornithine cyclodeamin 95.4 0.032 8.2E-07 35.3 4.8 91 6-99 129-219 (315)
193 pfam10727 Rossmann-like Rossma 95.4 0.077 2E-06 32.7 6.8 98 9-119 1-102 (111)
194 PRK06522 2-dehydropantoate 2-r 95.4 0.22 5.6E-06 29.6 9.1 100 6-108 1-108 (307)
195 PRK08291 ornithine cyclodeamin 95.3 0.036 9.1E-07 35.0 5.0 90 6-99 133-224 (330)
196 PRK12921 2-dehydropantoate 2-r 95.3 0.12 3.2E-06 31.3 7.8 101 6-108 1-108 (306)
197 PRK10675 UDP-galactose-4-epime 95.3 0.17 4.3E-06 30.4 8.4 31 6-38 1-32 (338)
198 PRK01438 murD UDP-N-acetylmura 95.3 0.11 2.9E-06 31.6 7.5 122 5-136 14-163 (481)
199 PRK05396 tdh L-threonine 3-deh 95.3 0.03 7.6E-07 35.6 4.5 94 7-104 166-266 (341)
200 PRK09987 dTDP-4-dehydrorhamnos 95.3 0.11 2.7E-06 31.7 7.3 83 6-103 1-104 (299)
201 COG1250 FadB 3-hydroxyacyl-CoA 95.3 0.085 2.2E-06 32.4 6.8 163 5-172 3-229 (307)
202 cd05290 LDH_3 A subgroup of L- 95.2 0.077 2E-06 32.7 6.4 153 7-186 1-163 (307)
203 PRK11199 tyrA bifunctional cho 95.2 0.13 3.2E-06 31.3 7.5 34 5-40 98-132 (374)
204 PRK07574 formate dehydrogenase 95.1 0.072 1.8E-06 32.9 5.9 26 7-33 194-219 (385)
205 PRK08618 ornithine cyclodeamin 95.1 0.047 1.2E-06 34.2 4.9 91 7-102 129-222 (325)
206 cd05297 GH4_alpha_glucosidase_ 95.0 0.33 8.5E-06 28.4 10.7 161 6-181 1-183 (423)
207 PRK13771 putative alcohol dehy 95.0 0.19 4.8E-06 30.1 7.9 111 6-124 164-278 (332)
208 KOG1198 consensus 95.0 0.13 3.4E-06 31.1 7.0 94 5-104 158-258 (347)
209 TIGR02853 spore_dpaA dipicolin 94.9 0.057 1.4E-06 33.6 5.1 86 1-95 145-235 (288)
210 PRK08125 bifunctional UDP-gluc 94.9 0.069 1.8E-06 33.0 5.5 98 5-108 315-441 (660)
211 PRK10669 putative cation:proto 94.9 0.36 9.3E-06 28.1 10.3 111 7-131 419-540 (558)
212 COG1260 INO1 Myo-inositol-1-ph 94.9 0.17 4.3E-06 30.4 7.4 253 1-269 1-338 (362)
213 PRK06019 phosphoribosylaminoim 94.9 0.37 9.3E-06 28.1 10.2 68 5-78 7-76 (377)
214 PRK03659 glutathione-regulated 94.9 0.37 9.4E-06 28.1 11.6 149 7-167 402-566 (602)
215 COG4569 MhpF Acetaldehyde dehy 94.9 0.07 1.8E-06 33.0 5.4 95 1-102 1-102 (310)
216 PRK06141 ornithine cyclodeamin 94.8 0.069 1.8E-06 33.0 5.2 93 6-102 126-220 (313)
217 PRK11730 fadB multifunctional 94.7 0.18 4.7E-06 30.2 7.2 160 5-170 312-536 (715)
218 PRK08605 D-lactate dehydrogena 94.7 0.41 1E-05 27.8 11.0 102 5-130 1-103 (332)
219 COG0039 Mdh Malate/lactate deh 94.7 0.16 4.1E-06 30.6 6.8 70 6-76 1-74 (313)
220 KOG0455 consensus 94.7 0.41 1E-05 27.8 9.6 166 4-184 2-192 (364)
221 cd04510 consensus 94.7 0.41 1E-05 27.8 9.5 70 5-76 1-82 (334)
222 PRK03815 murD UDP-N-acetylmura 94.7 0.16 4E-06 30.6 6.7 111 6-131 1-125 (401)
223 TIGR02817 adh_fam_1 zinc-bindi 94.6 0.12 3.1E-06 31.4 6.1 127 5-162 151-288 (338)
224 smart00829 PKS_ER Enoylreducta 94.6 0.23 5.8E-06 29.5 7.4 98 6-108 106-212 (288)
225 PRK05562 precorrin-2 dehydroge 94.6 0.24 6E-06 29.4 7.4 138 3-153 22-163 (222)
226 COG1893 ApbA Ketopantoate redu 94.5 0.24 6.1E-06 29.3 7.4 82 6-90 1-86 (307)
227 PRK13243 glyoxylate reductase; 94.4 0.098 2.5E-06 32.0 5.2 95 7-128 4-99 (333)
228 PRK06901 aspartate-semialdehyd 94.4 0.19 4.7E-06 30.1 6.7 119 1-131 1-134 (323)
229 PRK01390 murD UDP-N-acetylmura 94.4 0.15 3.9E-06 30.7 6.2 115 7-135 11-154 (457)
230 PRK05447 1-deoxy-D-xylulose 5- 94.3 0.35 8.9E-06 28.2 7.9 93 7-99 3-116 (379)
231 PRK11154 fadJ multifunctional 94.3 0.084 2.1E-06 32.5 4.7 157 7-170 311-532 (706)
232 PRK09288 purT phosphoribosylgl 94.3 0.37 9.4E-06 28.1 8.0 31 7-39 14-44 (395)
233 PRK10124 putative UDP-glucose 94.2 0.51 1.3E-05 27.1 9.1 82 5-100 144-236 (464)
234 COG2099 CobK Precorrin-6x redu 94.2 0.3 7.7E-06 28.7 7.3 92 4-100 1-98 (257)
235 TIGR00872 gnd_rel 6-phosphoglu 94.1 0.32 8.2E-06 28.5 7.3 102 6-116 1-110 (341)
236 pfam02826 2-Hacid_dh_C D-isome 94.1 0.14 3.5E-06 31.1 5.4 97 6-138 37-134 (176)
237 PRK08229 2-dehydropantoate 2-r 94.1 0.18 4.6E-06 30.2 6.0 100 5-107 2-112 (341)
238 COG0111 SerA Phosphoglycerate 94.0 0.22 5.5E-06 29.7 6.3 62 6-78 143-204 (324)
239 KOG0069 consensus 94.0 0.4 1E-05 27.8 7.6 61 7-78 164-224 (336)
240 PRK08605 D-lactate dehydrogena 93.9 0.14 3.5E-06 31.0 5.2 59 6-76 147-205 (332)
241 COG1179 Dinucleotide-utilizing 93.9 0.28 7.2E-06 28.9 6.7 93 7-100 32-151 (263)
242 PRK00683 murD UDP-N-acetylmura 93.9 0.2 5.2E-06 29.8 6.0 116 7-137 5-144 (418)
243 pfam00107 ADH_zinc_N Zinc-bind 93.8 0.35 8.9E-06 28.2 7.0 110 16-130 2-119 (131)
244 PRK04308 murD UDP-N-acetylmura 93.8 0.27 7E-06 29.0 6.4 75 1-83 1-77 (445)
245 COG1052 LdhA Lactate dehydroge 93.7 0.19 5E-06 30.0 5.6 61 6-78 147-207 (324)
246 pfam02254 TrkA_N TrkA-N domain 93.7 0.38 9.7E-06 28.0 7.1 102 8-116 1-107 (115)
247 TIGR03023 WcaJ_sugtrans Undeca 93.7 0.64 1.6E-05 26.4 9.0 84 6-100 129-223 (451)
248 PRK03806 murD UDP-N-acetylmura 93.7 0.57 1.5E-05 26.8 7.9 89 1-98 1-92 (438)
249 cd05313 NAD_bind_2_Glu_DH NAD( 93.6 0.65 1.7E-05 26.4 9.5 119 5-128 38-177 (254)
250 PRK12480 D-lactate dehydrogena 93.6 0.24 6.2E-06 29.3 6.0 102 6-131 2-104 (330)
251 KOG1494 consensus 93.6 0.12 3.1E-06 31.4 4.4 73 4-76 27-101 (345)
252 TIGR03025 EPS_sugtrans exopoly 93.6 0.66 1.7E-05 26.3 8.9 86 5-101 125-221 (445)
253 KOG4354 consensus 93.6 0.33 8.5E-06 28.4 6.6 130 2-135 16-166 (340)
254 COG0604 Qor NADPH:quinone redu 93.5 0.69 1.8E-05 26.2 8.2 94 6-104 144-244 (326)
255 TIGR01087 murD UDP-N-acetylmur 93.5 0.19 4.8E-06 30.1 5.2 121 7-136 1-151 (476)
256 PRK06932 glycerate dehydrogena 93.5 0.3 7.6E-06 28.7 6.2 63 64-130 37-99 (314)
257 PRK12367 short chain dehydroge 93.4 0.23 5.8E-06 29.5 5.5 31 7-38 19-50 (250)
258 PRK06436 glycerate dehydrogena 93.4 0.26 6.8E-06 29.1 5.8 58 6-78 123-180 (303)
259 PRK06487 glycerate dehydrogena 93.4 0.36 9.2E-06 28.2 6.5 60 66-129 40-99 (317)
260 PRK07589 ornithine cyclodeamin 93.3 0.26 6.7E-06 29.1 5.8 94 7-102 131-226 (346)
261 COG4693 PchG Oxidoreductase (N 93.2 0.32 8.2E-06 28.5 6.1 90 1-99 1-95 (361)
262 PRK10754 quinone oxidoreductas 93.2 0.17 4.3E-06 30.4 4.6 94 6-104 142-242 (327)
263 KOG2018 consensus 93.2 0.35 8.8E-06 28.3 6.2 97 7-105 76-199 (430)
264 TIGR01214 rmlD dTDP-4-dehydror 93.2 0.34 8.8E-06 28.3 6.2 160 7-185 1-218 (317)
265 PRK06046 alanine dehydrogenase 93.2 0.3 7.6E-06 28.7 5.8 98 5-106 129-228 (326)
266 PRK07340 ornithine cyclodeamin 93.1 0.18 4.5E-06 30.3 4.6 93 5-103 125-219 (304)
267 COG0771 MurD UDP-N-acetylmuram 93.1 0.49 1.3E-05 27.2 6.8 120 5-132 7-149 (448)
268 COG0334 GdhA Glutamate dehydro 93.0 0.81 2.1E-05 25.8 9.1 119 4-130 206-337 (411)
269 pfam10087 DUF2325 Uncharacteri 92.9 0.7 1.8E-05 26.2 7.4 89 7-116 1-94 (96)
270 PRK08289 glyceraldehyde-3-phos 92.8 0.36 9.1E-06 28.2 5.8 39 4-42 128-170 (479)
271 TIGR01761 thiaz-red thiazoliny 92.7 0.89 2.3E-05 25.5 8.0 112 5-125 3-129 (378)
272 TIGR00417 speE spermidine synt 92.7 0.12 3.2E-06 31.3 3.3 142 3-171 74-235 (284)
273 PRK08410 2-hydroxyacid dehydro 92.7 0.34 8.8E-06 28.3 5.6 63 64-130 35-97 (311)
274 pfam06408 consensus 92.6 0.26 6.5E-06 29.2 4.8 138 7-146 3-173 (471)
275 cd01488 Uba3_RUB Ubiquitin act 92.6 0.53 1.4E-05 27.0 6.4 100 7-107 1-134 (291)
276 PRK02472 murD UDP-N-acetylmura 92.5 0.59 1.5E-05 26.7 6.6 85 6-98 10-99 (450)
277 PRK00258 aroE shikimate 5-dehy 92.4 0.97 2.5E-05 25.2 7.5 72 6-81 123-194 (275)
278 TIGR01296 asd_B aspartate-semi 92.3 0.15 3.7E-06 30.8 3.3 117 7-130 1-132 (350)
279 COG1832 Predicted CoA-binding 92.3 1 2.6E-05 25.1 9.0 91 7-110 18-112 (140)
280 PRK12480 D-lactate dehydrogena 92.3 1 2.6E-05 25.1 10.8 57 6-76 147-203 (330)
281 TIGR03570 NeuD_NnaD sugar O-ac 92.3 1 2.6E-05 25.1 8.6 83 7-99 1-87 (201)
282 pfam02670 DXP_reductoisom 1-de 92.0 1.1 2.8E-05 24.9 8.1 44 8-51 1-46 (129)
283 pfam01370 Epimerase NAD depend 92.0 0.75 1.9E-05 26.0 6.6 31 8-40 1-32 (235)
284 cd01076 NAD_bind_1_Glu_DH NAD( 91.9 1.1 2.8E-05 24.8 8.7 117 5-130 31-161 (227)
285 PRK12767 carbamoyl phosphate s 91.9 1.1 2.9E-05 24.8 8.5 77 5-104 1-78 (325)
286 COG2423 Predicted ornithine cy 91.8 0.63 1.6E-05 26.5 6.1 90 7-99 132-222 (330)
287 PRK09496 trkA potassium transp 91.6 0.11 2.9E-06 31.6 2.1 123 6-137 233-361 (455)
288 TIGR02992 ectoine_eutC ectoine 91.6 0.083 2.1E-06 32.5 1.4 106 7-116 131-236 (326)
289 pfam02571 CbiJ Precorrin-6x re 91.4 0.71 1.8E-05 26.2 6.0 91 6-100 1-96 (246)
290 TIGR01759 MalateDH-SF1 malate 91.4 0.76 1.9E-05 25.9 6.1 118 4-131 2-134 (329)
291 pfam04321 RmlD_sub_bind RmlD s 91.4 1.2 3.1E-05 24.5 7.2 78 8-103 1-99 (284)
292 PRK09414 glutamate dehydrogena 91.3 1.3 3.2E-05 24.4 8.5 118 6-128 230-368 (446)
293 PRK08306 dipicolinate synthase 91.3 0.68 1.7E-05 26.3 5.8 57 5-76 2-60 (296)
294 cd05211 NAD_bind_Glu_Leu_Phe_V 91.1 1.3 3.4E-05 24.3 8.7 117 5-130 23-152 (217)
295 PRK11790 D-3-phosphoglycerate 91.1 0.69 1.8E-05 26.2 5.7 56 7-76 153-208 (409)
296 COG0059 IlvC Ketol-acid reduct 90.9 1.2 2.9E-05 24.7 6.7 180 7-231 20-207 (338)
297 PRK13581 D-3-phosphoglycerate 90.9 0.86 2.2E-05 25.6 6.0 58 7-76 140-197 (524)
298 KOG1014 consensus 90.9 0.49 1.2E-05 27.2 4.7 94 8-118 52-149 (312)
299 PRK05708 2-dehydropantoate 2-r 90.8 1.1 2.8E-05 24.9 6.4 100 5-106 2-108 (305)
300 PRK02318 mannitol-1-phosphate 90.8 0.37 9.5E-06 28.1 4.0 31 6-36 1-31 (381)
301 PRK10309 galactitol-1-phosphat 90.8 0.61 1.6E-05 26.6 5.1 93 7-103 163-262 (347)
302 COG1086 Predicted nucleoside-d 90.6 1.1 2.9E-05 24.8 6.4 86 2-98 113-207 (588)
303 KOG2304 consensus 90.5 0.19 4.8E-06 30.1 2.3 35 5-41 10-45 (298)
304 TIGR01202 bchC Chlorophyll syn 90.5 0.61 1.6E-05 26.6 4.9 94 5-108 155-251 (325)
305 PRK12549 shikimate 5-dehydroge 90.5 0.59 1.5E-05 26.7 4.8 33 7-40 129-161 (284)
306 KOG2653 consensus 90.4 1.3 3.4E-05 24.3 6.6 40 1-42 1-41 (487)
307 pfam02558 ApbA Ketopantoate re 90.2 1.6 4.1E-05 23.7 9.4 31 8-40 1-31 (150)
308 TIGR03589 PseB UDP-N-acetylglu 90.1 1.6 4.1E-05 23.7 7.1 96 6-103 5-125 (324)
309 cd01490 Ube1_repeat2 Ubiquitin 90.1 1.2 3.1E-05 24.5 6.2 100 7-107 1-136 (435)
310 KOG0409 consensus 90.1 0.65 1.7E-05 26.4 4.8 63 4-76 34-96 (327)
311 pfam00208 ELFV_dehydrog Glutam 89.9 1.7 4.3E-05 23.6 10.0 117 6-130 33-165 (237)
312 TIGR00692 tdh L-threonine 3-de 89.9 1.7 4.3E-05 23.6 7.5 91 7-101 164-261 (341)
313 PRK00257 erythronate-4-phospha 89.8 0.79 2E-05 25.8 5.0 56 6-76 117-172 (379)
314 pfam01073 3Beta_HSD 3-beta hyd 89.8 1.7 4.4E-05 23.5 7.2 68 10-78 2-73 (280)
315 cd01065 NAD_bind_Shikimate_DH 89.7 1.1 2.7E-05 25.0 5.6 72 6-81 20-91 (155)
316 PRK05225 ketol-acid reductoiso 89.7 1.4 3.6E-05 24.1 6.3 189 6-228 38-229 (489)
317 PRK06444 prephenate dehydrogen 89.7 1.3 3.3E-05 24.3 6.0 27 6-33 1-28 (197)
318 COG0565 LasT rRNA methylase [T 89.7 1.8 4.5E-05 23.4 11.1 133 5-141 4-158 (242)
319 TIGR01772 MDH_euk_gproteo mala 89.6 0.95 2.4E-05 25.3 5.3 70 7-76 1-93 (379)
320 TIGR02371 ala_DH_arch alanine 89.4 1 2.7E-05 25.0 5.4 98 6-111 130-234 (327)
321 TIGR02354 thiF_fam2 thiamine b 89.3 1.1 2.7E-05 25.0 5.4 100 7-106 23-147 (200)
322 TIGR00507 aroE shikimate 5-deh 89.3 0.6 1.5E-05 26.6 4.1 134 6-149 122-265 (286)
323 KOG1203 consensus 89.1 1.5 3.8E-05 23.9 6.0 35 4-40 78-113 (411)
324 cd01075 NAD_bind_Leu_Phe_Val_D 89.1 1.9 4.9E-05 23.2 6.8 109 6-130 29-141 (200)
325 PRK08818 prephenate dehydrogen 89.0 2 5E-05 23.1 7.8 34 1-35 1-35 (373)
326 PRK05479 ketol-acid reductoiso 88.9 1.4 3.7E-05 24.0 5.9 180 6-228 18-203 (336)
327 PRK03803 murD UDP-N-acetylmura 88.8 1.8 4.7E-05 23.3 6.3 119 7-136 9-150 (448)
328 PRK10537 voltage-gated potassi 88.6 2.1 5.3E-05 22.9 9.1 112 7-131 206-325 (356)
329 TIGR03201 dearomat_had 6-hydro 88.5 2.1 5.4E-05 22.9 7.6 110 7-123 169-293 (349)
330 PRK07424 bifunctional sterol d 88.4 1.5 3.8E-05 23.9 5.7 32 7-39 182-214 (410)
331 COG2403 Predicted GTPase [Gene 88.4 2.1 5.4E-05 22.9 6.8 96 1-96 2-110 (449)
332 pfam00670 AdoHcyase_NAD S-aden 88.4 1.7 4.3E-05 23.6 5.9 98 7-118 25-126 (162)
333 KOG2733 consensus 88.4 0.97 2.5E-05 25.2 4.7 159 1-173 1-185 (423)
334 TIGR02198 rfaE_dom_I rfaE bifu 88.3 0.56 1.4E-05 26.8 3.4 114 8-131 67-203 (321)
335 PRK11064 wecC UDP-N-acetyl-D-m 88.2 2.2 5.6E-05 22.8 8.6 34 5-40 3-36 (415)
336 pfam07991 IlvN Acetohydroxy ac 88.2 1.7 4.5E-05 23.5 5.9 150 6-184 5-160 (165)
337 pfam07994 NAD_binding_5 Myo-in 88.2 2.2 5.6E-05 22.8 6.7 49 221-269 313-362 (389)
338 COG3367 Uncharacterized conser 88.2 1.8 4.7E-05 23.3 6.0 105 14-122 12-123 (339)
339 PRK10433 putative RNA methyltr 88.2 2.2 5.6E-05 22.8 8.4 125 5-136 2-152 (228)
340 PRK09422 alcohol dehydrogenase 88.0 1.5 3.9E-05 23.9 5.5 29 7-35 165-193 (338)
341 PRK00421 murC UDP-N-acetylmura 87.8 2.3 5.9E-05 22.6 8.5 85 5-99 7-95 (459)
342 TIGR01745 asd_gamma aspartate- 87.7 0.4 1E-05 27.9 2.3 124 6-135 1-142 (367)
343 KOG1430 consensus 87.7 2.4 6E-05 22.6 7.8 37 5-41 4-41 (361)
344 PRK10084 dTDP-glucose 4,6 dehy 87.6 1.2 3.1E-05 24.5 4.8 32 6-38 1-33 (352)
345 KOG2017 consensus 87.3 0.45 1.1E-05 27.5 2.4 103 6-110 67-196 (427)
346 COG1062 AdhC Zn-dependent alco 87.2 1.9 4.9E-05 23.2 5.6 102 7-109 188-293 (366)
347 COG3320 Putative dehydrogenase 87.2 1.4 3.5E-05 24.2 4.9 35 6-41 1-36 (382)
348 cd03360 LbH_AT_putative Putati 87.2 2.3 5.8E-05 22.7 6.0 81 10-99 1-84 (197)
349 COG0476 ThiF Dinucleotide-util 87.1 2.4 6.1E-05 22.5 6.1 97 6-103 31-153 (254)
350 TIGR02355 moeB molybdopterin s 87.1 0.48 1.2E-05 27.3 2.5 134 7-142 26-202 (240)
351 PRK09009 C factor cell-cell si 87.1 1.5 3.9E-05 23.8 5.0 31 6-36 1-33 (235)
352 COG0579 Predicted dehydrogenas 87.0 2.6 6.5E-05 22.3 7.3 108 5-123 3-117 (429)
353 KOG3124 consensus 86.7 2.7 6.8E-05 22.2 6.3 101 6-111 1-104 (267)
354 cd00762 NAD_bind_malic_enz NAD 86.7 1.4 3.6E-05 24.1 4.7 113 6-119 26-160 (254)
355 TIGR00670 asp_carb_tr aspartat 86.5 1.6 4.2E-05 23.6 4.9 73 5-79 174-250 (336)
356 TIGR03013 EpsB_2 sugar transfe 86.4 2.8 7E-05 22.1 9.6 89 6-103 125-221 (442)
357 TIGR03649 ergot_EASG ergot alk 86.3 2.8 7.1E-05 22.1 8.2 92 8-106 2-107 (285)
358 PRK13608 diacylglycerol glucos 86.1 2.9 7.3E-05 22.0 8.6 35 71-106 104-138 (391)
359 cd04104 p47_IIGP_like p47 (47- 86.0 2.9 7.4E-05 22.0 8.3 143 5-147 1-184 (197)
360 PRK07454 short chain dehydroge 85.9 2.5 6.3E-05 22.4 5.6 89 1-106 1-94 (241)
361 KOG4777 consensus 85.7 2 5.1E-05 23.0 5.1 119 7-133 5-157 (361)
362 PRK11891 aspartate carbamoyltr 85.1 2.2 5.5E-05 22.8 5.0 69 6-76 243-314 (430)
363 cd05005 SIS_PHI Hexulose-6-pho 84.9 3.1 7.9E-05 21.8 5.7 53 69-122 73-128 (179)
364 KOG2742 consensus 84.6 0.74 1.9E-05 26.0 2.4 106 4-119 2-111 (367)
365 PRK13403 ketol-acid reductoiso 84.4 1.9 4.9E-05 23.2 4.4 180 6-229 17-202 (335)
366 pfam07075 DUF1343 Protein of u 84.3 2.6 6.6E-05 22.3 5.1 137 15-159 12-176 (359)
367 PRK02705 murD UDP-N-acetylmura 83.8 3.6 9.2E-05 21.3 8.7 86 9-98 4-95 (459)
368 KOG2013 consensus 83.7 1 2.6E-05 25.0 2.9 101 6-107 13-141 (603)
369 PTZ00079 NADP-specific glutama 83.7 3.6 9.3E-05 21.3 9.2 118 6-128 253-391 (469)
370 cd03798 GT1_wlbH_like This fam 83.7 2.9 7.5E-05 21.9 5.2 31 71-102 93-124 (377)
371 cd05296 GH4_P_beta_glucosidase 83.6 3.7 9.3E-05 21.3 9.0 155 6-181 1-182 (419)
372 TIGR02964 xanthine_xdhC xanthi 83.6 1.7 4.4E-05 23.5 3.9 88 5-95 115-210 (270)
373 PRK07578 short chain dehydroge 83.4 3.7 9.5E-05 21.2 6.9 23 6-28 1-24 (199)
374 cd03794 GT1_wbuB_like This fam 83.4 3.7 9.5E-05 21.2 6.7 32 70-101 98-130 (394)
375 PRK00779 ornithine carbamoyltr 83.3 3.8 9.6E-05 21.2 5.7 31 72-104 100-131 (308)
376 COG1105 FruK Fructose-1-phosph 83.3 3.2 8.2E-05 21.6 5.2 195 6-258 51-267 (310)
377 PRK13609 diacylglycerol glucos 82.9 3.9 1E-04 21.1 13.7 155 8-181 205-367 (388)
378 COG0451 WcaG Nucleoside-diphos 82.3 4.1 0.0001 20.9 7.6 33 6-40 1-34 (314)
379 cd05295 MDH_like Malate dehydr 82.0 4.2 0.00011 20.8 6.1 72 4-77 122-205 (452)
380 pfam01262 AlaDh_PNT_C Alanine 82.0 2.2 5.7E-05 22.7 4.0 72 3-79 18-92 (150)
381 cd03823 GT1_ExpE7_like This fa 81.7 3.8 9.6E-05 21.2 5.1 29 71-100 96-125 (359)
382 PRK05826 pyruvate kinase; Prov 81.3 4.5 0.00011 20.7 5.8 83 63-146 229-333 (461)
383 cd03817 GT1_UGDG_like This fam 81.1 3.9 9.8E-05 21.1 5.0 29 71-100 84-113 (374)
384 PRK00089 era GTP-binding prote 80.9 4.6 0.00012 20.6 7.8 143 1-143 1-172 (296)
385 PRK12557 H(2)-dependent methyl 80.4 4.8 0.00012 20.5 6.6 41 51-91 61-102 (341)
386 pfam01564 Spermine_synth Sperm 80.4 4.8 0.00012 20.5 8.8 127 3-147 74-211 (240)
387 PRK10046 dpiA two-component re 80.2 4.8 0.00012 20.4 7.5 156 1-182 1-170 (225)
388 TIGR01692 HIBADH 3-hydroxyisob 80.2 3.3 8.5E-05 21.5 4.4 157 11-199 2-221 (290)
389 TIGR02279 PaaC-3OHAcCoADH 3-hy 79.6 1.7 4.3E-05 23.5 2.7 33 4-38 4-36 (508)
390 cd00401 AdoHcyase S-adenosyl-L 79.4 5.1 0.00013 20.3 6.2 57 209-269 314-379 (413)
391 PRK00676 hemA glutamyl-tRNA re 79.3 4.3 0.00011 20.7 4.8 32 7-39 176-207 (338)
392 PRK10217 dTDP-glucose 4,6-dehy 79.3 5.1 0.00013 20.2 5.7 73 7-80 3-83 (355)
393 pfam05221 AdoHcyase S-adenosyl 79.3 5.2 0.00013 20.2 5.6 56 209-267 322-387 (430)
394 TIGR01751 crot-CoA-red crotony 79.1 1.2 3.1E-05 24.5 1.9 101 7-108 200-328 (409)
395 PRK08057 cobalt-precorrin-6x r 78.9 5.3 0.00013 20.2 6.6 87 7-100 3-94 (241)
396 pfam02719 Polysacc_synt_2 Poly 78.8 5.3 0.00014 20.2 7.7 95 8-103 1-124 (280)
397 cd01491 Ube1_repeat1 Ubiquitin 78.8 5.3 0.00014 20.1 7.9 96 6-102 20-137 (286)
398 PRK10651 transcriptional regul 78.7 5.4 0.00014 20.1 6.2 108 1-131 1-114 (216)
399 COG0169 AroE Shikimate 5-dehyd 78.3 5.5 0.00014 20.0 5.4 107 6-118 127-240 (283)
400 TIGR01161 purK phosphoribosyla 77.8 5.7 0.00014 20.0 5.7 100 7-140 1-106 (386)
401 cd05298 GH4_GlvA_pagL_like Gly 77.5 5.8 0.00015 19.9 7.1 155 6-180 1-181 (437)
402 COG1087 GalE UDP-glucose 4-epi 77.5 4.9 0.00012 20.4 4.6 223 6-257 1-243 (329)
403 PRK12862 malic enzyme; Reviewe 77.5 5.8 0.00015 19.9 7.0 82 5-90 192-280 (761)
404 TIGR02197 heptose_epim ADP-L-g 77.3 5.9 0.00015 19.9 5.0 207 8-265 1-265 (353)
405 KOG0022 consensus 77.0 6 0.00015 19.8 5.5 99 7-106 195-299 (375)
406 PRK00711 D-amino acid dehydrog 76.9 5.9 0.00015 19.8 4.8 34 6-41 1-34 (416)
407 PRK12548 shikimate 5-dehydroge 76.9 6 0.00015 19.8 7.7 111 6-118 127-250 (289)
408 PRK07045 putative monooxygenas 76.7 3.5 8.8E-05 21.4 3.6 38 1-40 1-38 (388)
409 TIGR03127 RuMP_HxlB 6-phospho 76.5 6.2 0.00016 19.7 8.7 52 69-121 70-124 (179)
410 TIGR01777 yfcH conserved hypot 76.1 6.3 0.00016 19.6 5.3 146 8-175 1-158 (307)
411 KOG1221 consensus 76.0 6.3 0.00016 19.6 5.4 43 7-52 14-58 (467)
412 PRK03515 ornithine carbamoyltr 75.9 4.5 0.00011 20.6 4.0 33 71-105 100-132 (334)
413 TIGR02440 FadJ fatty oxidation 75.2 4.8 0.00012 20.5 4.0 154 7-193 309-493 (732)
414 PRK08340 glucose-1-dehydrogena 75.1 6.7 0.00017 19.5 5.1 77 6-100 1-81 (259)
415 cd01859 MJ1464 MJ1464. This f 74.9 6.8 0.00017 19.4 6.9 77 65-141 6-93 (156)
416 TIGR01181 dTDP_gluc_dehyt dTDP 74.7 3.4 8.7E-05 21.5 3.1 71 7-78 1-80 (340)
417 PRK12861 malic enzyme; Reviewe 74.3 7 0.00018 19.3 6.9 85 5-89 187-274 (762)
418 pfam07755 DUF1611 Protein of u 74.3 7 0.00018 19.3 5.2 77 41-119 3-86 (302)
419 cd01078 NAD_bind_H4MPT_DH NADP 74.2 7 0.00018 19.3 6.6 78 6-89 29-113 (194)
420 cd03795 GT1_like_4 This family 74.0 6 0.00015 19.8 4.3 30 70-100 82-111 (357)
421 TIGR01771 L-LDH-NAD L-lactate 73.8 5.3 0.00014 20.1 4.0 36 10-45 1-36 (302)
422 cd01892 Miro2 Miro2 subfamily. 73.5 7.3 0.00019 19.2 6.6 75 69-143 75-166 (169)
423 PRK06921 hypothetical protein; 73.5 7.3 0.00019 19.2 5.7 29 98-126 120-152 (265)
424 PRK05579 bifunctional phosphop 73.4 7.4 0.00019 19.2 5.5 40 4-45 5-47 (392)
425 pfam00185 OTCace Aspartate/orn 73.2 7.4 0.00019 19.2 5.6 69 5-76 2-78 (155)
426 PRK10886 DnaA initiator-associ 73.1 4.9 0.00013 20.4 3.7 65 64-131 102-169 (196)
427 cd05191 NAD_bind_amino_acid_DH 73.1 7.5 0.00019 19.1 6.2 23 6-28 24-46 (86)
428 cd03801 GT1_YqgM_like This fam 72.8 7.6 0.00019 19.1 5.3 31 70-101 84-114 (374)
429 KOG4039 consensus 72.8 4.7 0.00012 20.5 3.5 37 5-41 18-55 (238)
430 PRK05476 S-adenosyl-L-homocyst 72.4 7.5 0.00019 19.1 4.4 56 209-268 320-384 (427)
431 PRK09554 feoB ferrous iron tra 72.3 7.7 0.0002 19.0 11.2 137 4-143 2-167 (772)
432 PRK09932 glycerate kinase II; 72.2 7.8 0.0002 19.0 7.1 10 86-95 116-125 (381)
433 COG1618 Predicted nucleotide k 71.8 8 0.0002 19.0 6.0 97 1-99 1-134 (179)
434 COG2229 Predicted GTPase [Gene 71.4 8.1 0.00021 18.9 8.3 121 4-124 9-157 (187)
435 COG1090 Predicted nucleoside-d 70.9 7.9 0.0002 19.0 4.3 62 8-79 1-64 (297)
436 cd03811 GT1_WabH_like This fam 70.8 8.4 0.00021 18.8 5.5 30 71-101 81-110 (353)
437 KOG1370 consensus 70.6 6.9 0.00018 19.4 3.9 89 8-110 217-307 (434)
438 cd03814 GT1_like_2 This family 70.5 7.3 0.00019 19.2 4.0 29 71-100 83-112 (364)
439 cd01493 APPBP1_RUB Ubiquitin a 70.1 8.7 0.00022 18.7 7.2 115 6-128 21-146 (425)
440 PRK02102 ornithine carbamoyltr 69.9 6.5 0.00017 19.6 3.7 32 72-105 102-133 (331)
441 COG3010 NanE Putative N-acetyl 69.6 8.9 0.00023 18.6 7.3 87 17-118 54-178 (229)
442 cd00288 Pyruvate_Kinase Pyruva 69.2 9 0.00023 18.6 5.2 137 63-200 229-389 (480)
443 cd03820 GT1_amsD_like This fam 69.0 8.3 0.00021 18.8 4.1 23 14-37 16-38 (348)
444 TIGR00064 ftsY signal recognit 68.9 9.1 0.00023 18.5 8.3 152 6-179 86-255 (284)
445 TIGR01851 argC_other N-acetyl- 67.8 6.9 0.00018 19.4 3.4 93 7-120 3-110 (314)
446 PTZ00188 adrenodoxin reductase 67.7 9.7 0.00025 18.4 5.3 39 3-42 37-75 (506)
447 KOG0068 consensus 67.7 9.7 0.00025 18.4 5.3 86 8-105 149-239 (406)
448 PRK09468 ompR osmolarity respo 67.6 9.7 0.00025 18.4 7.2 92 1-119 1-99 (239)
449 PTZ00066 pyruvate kinase; Prov 67.5 9.8 0.00025 18.3 7.6 137 63-200 265-425 (513)
450 PRK07024 short chain dehydroge 67.4 9.8 0.00025 18.3 7.0 82 1-106 1-88 (256)
451 PRK08251 short chain dehydroge 67.3 9.8 0.00025 18.3 6.2 83 7-106 4-92 (248)
452 cd05312 NAD_bind_1_malic_enz N 67.3 9.9 0.00025 18.3 7.0 114 5-118 25-158 (279)
453 COG0702 Predicted nucleoside-d 67.2 9.9 0.00025 18.3 7.7 34 6-41 1-35 (275)
454 PRK08192 aspartate carbamoyltr 67.2 9.9 0.00025 18.3 5.5 34 71-106 100-133 (338)
455 TIGR00112 proC pyrroline-5-car 67.1 9.9 0.00025 18.3 6.4 120 8-133 1-134 (274)
456 PRK12825 fabG 3-ketoacyl-(acyl 67.1 9.9 0.00025 18.3 7.7 218 7-260 9-233 (250)
457 PRK11150 rfaD ADP-L-glycero-D- 66.8 10 0.00026 18.3 7.9 30 8-38 2-32 (308)
458 TIGR01418 PEP_synth phosphoeno 66.4 6.7 0.00017 19.5 3.2 79 46-126 417-506 (877)
459 PRK00811 spermidine synthase; 66.3 10 0.00026 18.2 8.8 126 3-146 77-214 (283)
460 COG0300 DltE Short-chain dehyd 65.9 10 0.00027 18.1 6.4 84 6-106 7-95 (265)
461 PRK09620 hypothetical protein; 65.9 6.7 0.00017 19.5 3.1 31 5-36 19-50 (229)
462 PRK10403 transcriptional regul 65.7 11 0.00027 18.1 7.9 107 1-131 1-114 (215)
463 TIGR01763 MalateDH_bact malate 65.3 11 0.00027 18.1 5.1 56 6-62 2-62 (308)
464 cd03812 GT1_CapH_like This fam 65.1 11 0.00028 18.0 6.5 30 71-102 80-110 (358)
465 PRK05884 short chain dehydroge 65.0 11 0.00028 18.0 6.7 67 6-93 1-68 (223)
466 PRK13352 thiamine biosynthesis 64.9 11 0.00027 18.1 3.9 20 81-100 77-96 (433)
467 pfam04131 NanE Putative N-acet 64.8 11 0.00028 18.0 7.7 66 17-96 20-93 (192)
468 PRK06719 precorrin-2 dehydroge 64.7 11 0.00028 18.0 6.4 81 6-96 14-95 (157)
469 pfam09754 PAC2 PAC2 family. Th 64.7 7 0.00018 19.3 3.0 96 9-109 4-112 (177)
470 PRK11728 hypothetical protein; 64.5 11 0.00028 18.0 11.9 132 7-144 4-161 (400)
471 PRK06940 short chain dehydroge 64.2 11 0.00029 17.9 6.6 82 7-106 6-90 (277)
472 COG0794 GutQ Predicted sugar p 63.9 11 0.00029 17.9 6.3 114 7-143 41-173 (202)
473 COG4007 Predicted dehydrogenas 63.8 11 0.00029 17.9 6.5 39 51-89 62-101 (340)
474 PRK10365 transcriptional regul 63.8 11 0.00029 17.9 7.9 91 1-115 1-98 (441)
475 cd04951 GT1_WbdM_like This fam 63.7 11 0.00029 17.9 5.2 23 13-36 14-36 (360)
476 PRK03372 ppnK inorganic polyph 63.7 11 0.00029 17.9 7.8 100 1-108 1-109 (303)
477 pfam09587 PGA_cap Bacterial ca 63.6 2.5 6.4E-05 22.4 0.5 31 152-182 171-202 (237)
478 PRK06718 precorrin-2 dehydroge 63.6 12 0.00029 17.8 7.2 87 6-99 11-98 (202)
479 COG1456 CdhE CO dehydrogenase/ 63.2 12 0.0003 17.8 4.6 47 80-128 144-191 (467)
480 KOG0024 consensus 63.1 12 0.0003 17.8 7.6 120 7-127 172-301 (354)
481 COG2130 Putative NADP-dependen 63.1 12 0.0003 17.8 6.5 32 7-39 153-185 (340)
482 PRK12464 1-deoxy-D-xylulose 5- 62.7 12 0.0003 17.7 7.5 91 10-100 1-117 (392)
483 KOG2250 consensus 62.6 12 0.00031 17.7 9.5 121 6-131 252-392 (514)
484 TIGR00745 apbA_panE 2-dehydrop 62.4 12 0.00031 17.7 8.5 73 7-80 1-86 (332)
485 COG1648 CysG Siroheme synthase 62.3 12 0.00031 17.7 6.7 132 6-147 13-148 (210)
486 PTZ00075 S-adenosyl-L-homocyst 62.3 12 0.00031 17.7 5.5 47 222-269 377-434 (476)
487 TIGR00877 purD phosphoribosyla 62.3 12 0.00031 17.7 5.8 116 6-129 1-131 (459)
488 pfam00389 2-Hacid_dh D-isomer 62.2 12 0.0003 17.8 3.8 64 63-130 31-95 (313)
489 TIGR01915 npdG NADPH-dependent 62.1 12 0.00031 17.7 6.2 99 6-107 1-116 (233)
490 TIGR01169 rplA_bact ribosomal 62.1 10 0.00027 18.1 3.5 23 71-95 108-130 (227)
491 pfam04016 DUF364 Domain of unk 62.1 12 0.00031 17.7 7.1 10 67-76 158-167 (229)
492 PRK12320 hypothetical protein; 61.7 12 0.00032 17.6 6.9 97 6-110 1-110 (699)
493 pfam11017 DUF2855 Protein of u 61.6 12 0.00032 17.6 7.0 96 7-108 138-238 (314)
494 cd03799 GT1_amsK_like This is 61.6 12 0.00032 17.6 6.9 30 71-100 79-108 (355)
495 COG0324 MiaA tRNA delta(2)-iso 61.3 11 0.00029 17.9 3.6 89 8-107 6-105 (308)
496 cd06311 PBP1_ABC_sugar_binding 61.3 13 0.00032 17.6 4.5 42 65-106 53-96 (274)
497 TIGR00075 hypD hydrogenase exp 61.1 7.7 0.0002 19.0 2.7 59 58-118 182-252 (384)
498 COG1088 RfbB dTDP-D-glucose 4, 60.8 13 0.00033 17.5 4.9 88 6-96 1-117 (340)
499 TIGR00114 lumazine-synth 6,7-d 60.6 6.8 0.00017 19.4 2.3 43 70-112 64-121 (148)
500 COG1042 Acyl-CoA synthetase (N 60.5 13 0.00033 17.5 8.5 106 8-127 13-130 (598)
No 1
>TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770 Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine. It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below : 2,3-dihydrodipicolinate + NAD(P)H = 2,3,4,5-tetrahydrodipicolinate + NAD(P)(+) As this enzyme is not found in mammals it is a potential target for the development of novel antibacterial and herbicidal compounds. The structures of the Escherichia coli (P04036 from SWISSPROT) and Mycobacterium tuberculosis (P72024 from SWISSPROT) enzymes have been determined , . The enzyme is a homotetramer where each monomer is composed of two domains, an N-terminal NAD(P)H-binding domain which forms a Rossman fold, and a C-terminal substrate-binding domain that forms an open, mixed alpha-beta sandwich.Tetramerisation occurs exclusively through interactions between C-terminal domain residues. Both enzymes show relatively little preference for either NADH or NADPH as cofactor. Conformational changes upon substrate binding bring the cofactor and substrate into close proximity and allow catalysis to occur. ; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=625.56 Aligned_cols=265 Identities=37% Similarity=0.664 Sum_probs=258.2
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH------HCCCCEEE
Q ss_conf 737999899-87799999999838-99789999964898020455366608754675455685785------21355047
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA------IQSVDGII 76 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~------~~~~DViI 76 (280)
.|||+|.|| ||||+.+++.+.+. ++++|+++++|++++..|+|+|++.+..+.++++++|++.. -..+||+|
T Consensus 1 ~ikvav~GA~GRMG~~~ik~~~~~ye~l~Lv~A~~~~~~~~~G~D~GEl~g~g~~gv~v~~~~~~~~~l~~~~~~~DVli 80 (281)
T TIGR00036 1 LIKVAVAGAAGRMGRELIKAVLQAYEGLKLVAAFERHGSSLQGTDIGELAGIGKVGVPVTDDLEAVLVLAFTETKPDVLI 80 (281)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 98358847887346999999997489816788886168885665420242255478410005788999874023686478
Q ss_pred EEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCC-H
Q ss_conf 6310102478887643237215765022231358999874035--552100001156899999999999861156660-0
Q gi|254780279|r 77 DFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN--APIVKSSNMSLGINFLGFLVETAAEYLLPAKDW-D 153 (280)
Q Consensus 77 DFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~-d 153 (280)
|||.|++++++++.|+++|+.+|+|||||++++++.|++++++ +|+++|||||||||+|+++++++|++| .+| |
T Consensus 81 DFT~p~g~~~~~~~a~~~Gv~~V~GTTGf~e~~~~~~~~~a~~~~~~~v~A~NFa~GV~~~~K~~~~aA~~l---~D~~D 157 (281)
T TIGR00036 81 DFTTPEGVVENVKIALENGVRLVVGTTGFSEEDLQELRDLAEKKGVAAVIAPNFAIGVNLMFKLLEKAAKYL---GDYTD 157 (281)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCCCC
T ss_conf 738605678999999966885577166899899999999998649978984650689999999999998762---45655
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCC---CEEEECCCCCEEEEEEEECCC
Q ss_conf 8999986416789986789999999985328-876422111235767654334565---013752882057999981899
Q gi|254780279|r 154 FEILEMHHRRKLDSPSGTALLLGEAIANGRK-VNLTDHMVLNRHIQQCARTEGSIG---IASLRAGSIVGEHSVVIAGEG 229 (280)
Q Consensus 154 ieI~E~HH~~K~DaPSGTA~~la~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~I~---i~s~R~g~~~g~H~V~f~~~~ 229 (280)
|||+|+||++|+||||||||+++|.|++.++ ++.++..++.|++.+|+|...+|+ |||+|+||++|+|+|+|+++|
T Consensus 158 iEIIE~HHr~K~DAPSGTAL~~~E~i~~~~~~~~~~~~~v~~REG~~G~R~~~~iGqI~~~~~RggDvvG~H~V~F~~~G 237 (281)
T TIGR00036 158 IEIIELHHRHKKDAPSGTALKLAEIIAEARGEKDIKEVAVTEREGLTGERGREEIGQIRIHAVRGGDVVGEHTVLFAGDG 237 (281)
T ss_pred EEEEECHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCC
T ss_conf 45441200258999707899999999987055430003655456777888888897137998725771354678875898
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHCCC
Q ss_conf 5899999972737679999999999834899-836888982688
Q gi|254780279|r 230 ESITLSHSAYDRRIFARGSLTAALWAKSQIP-GLYSMRDVLGIG 272 (280)
Q Consensus 230 E~i~i~H~a~~R~~Fa~Gal~aa~~l~~~~~-G~y~m~dvL~l~ 272 (280)
|+|+|+|+|.||.+||.||++|++|+.++++ ++|+|+|||+||
T Consensus 238 E~~ei~H~A~sR~~F~~Gv~~a~~~~~~~~~g~~Y~~~d~L~lN 281 (281)
T TIGR00036 238 ERIEITHRASSRAAFANGVVRAIRWIADKDKGGVYDMEDVLGLN 281 (281)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC
T ss_conf 54899861233678888999999999874178720557650379
No 2
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=599.01 Aligned_cols=265 Identities=45% Similarity=0.731 Sum_probs=259.5
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC
Q ss_conf 8737999899-877999999998389978999996489802045536660875467545568578521355047631010
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~ 82 (280)
++|||+|+|| |||||.+++.+.+.++++|+++++++++...++|.+++.+....++++++|+.....++||+||||+|+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~ 80 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE 80 (266)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEECCHHHCCCCCCEEEECCCCH
T ss_conf 97369997578727899999985289946999981378422343112321446557332063433046898899899825
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 24788876432372157650222313589998740355521000011568999999999998611566600899998641
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHR 162 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~ 162 (280)
++++++++|+++++++|||||||++++++.|+++++++|+++|||||+|+|++++|+++++++|+ +|||||+|+||+
T Consensus 81 ~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~---~~DiEIiE~HHr 157 (266)
T COG0289 81 ATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLD---DYDIEIIEAHHR 157 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEHHHHCC
T ss_conf 46999999997699869979999989999999998538989965640799999999999998667---788786323236
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCHH
Q ss_conf 67899867899999999853288764221112357676543345650137528820579999818995899999972737
Q gi|254780279|r 163 RKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRR 242 (280)
Q Consensus 163 ~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~ 242 (280)
+|+|||||||++|+|.|++.++.++.+..++.|+|.+|+|.+++|+|||+|+|+++|+|||+|+++||+|+|+|+|.||.
T Consensus 158 ~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~~~Igi~svR~G~ivG~H~V~F~~~GE~iei~H~A~sR~ 237 (266)
T COG0289 158 HKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGEGERIEIRHRATSRD 237 (266)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEECCHH
T ss_conf 67889867899999999986065654341560367767778897216875548812047999724882799998413188
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHCC
Q ss_conf 67999999999983489983688898268
Q gi|254780279|r 243 IFARGSLTAALWAKSQIPGLYSMRDVLGI 271 (280)
Q Consensus 243 ~Fa~Gal~aa~~l~~~~~G~y~m~dvL~l 271 (280)
+||.||++||+|+.+|+||+|+|+|||+|
T Consensus 238 ~Fa~Gal~aa~wi~~k~~g~Y~m~dvL~l 266 (266)
T COG0289 238 SFARGALLAARWLVGKPPGLYDMEDVLGL 266 (266)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHCC
T ss_conf 88888999999982789871026885266
No 3
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=100.00 E-value=0 Score=589.18 Aligned_cols=263 Identities=44% Similarity=0.757 Sum_probs=257.6
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 737999899-8779999999983899789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
+|||+|+|+ |||||++++.+.++++++|++++++++++..|+|++++.+..+.++++++++++++.++|||||||+|++
T Consensus 2 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~l~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~DVvIDFS~p~~ 81 (265)
T PRK00048 2 MIKVGVAGASGRMGRELIEAVEAAEDLELVAALDRPGSPLVGQDAGELAGLGKLGVPITDDLEAVLDDFDVLIDFTTPEA 81 (265)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHCCCCEEEECCCHHH
T ss_conf 45999988888779999999986899799999946897233653566527676784311789886055998998998899
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
Q ss_conf 47888764323721576502223135899987403555210000115689999999999986115666008999986416
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRR 163 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~ 163 (280)
+.+++++|.++++|+|+|||||+++|++.|+++++++|||+|||||+|+|+|++++++++++| ++|||||+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~ViGTTG~~~~~~~~i~~~s~~ipil~apNfSlGvnll~~l~~~aa~~l---~~~dieIiE~HH~~ 158 (265)
T PRK00048 82 TLENLEFALEHGKPLVIGTTGFTEEQLAALREAAKKIPVVIAPNFSVGVNLLMKLAEKAAKYL---GDYDIEIIEAHHRH 158 (265)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCC
T ss_conf 999999999749977996089998999999974658878997855899999999999999756---65777999906888
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCHHH
Q ss_conf 78998678999999998532887642211123576765433456501375288205799998189958999999727376
Q gi|254780279|r 164 KLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRI 243 (280)
Q Consensus 164 K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~~ 243 (280)
|+|||||||++|++.|++.++..+.+...++|++.++.|.+++|+|||+|+|+++|+|+|+|.+++|+|+|+|+|+||++
T Consensus 159 K~DaPSGTAl~la~~i~~~~~~~~~~~~~~~~~~~~g~r~~~~I~i~SiR~g~vvG~H~V~f~~~~E~i~i~H~A~~R~~ 238 (265)
T PRK00048 159 KVDAPSGTALKLAEAIAEARGRDLKDVAVYGREGATGARVPGGIGIHSVRGGDIVGEHTVIFAGDGERIEIRHDATSRMS 238 (265)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEEECCHHH
T ss_conf 89999888999999999862645655403214565577577861599896589884089997189967999999698888
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHC
Q ss_conf 799999999998348998368889826
Q gi|254780279|r 244 FARGSLTAALWAKSQIPGLYSMRDVLG 270 (280)
Q Consensus 244 Fa~Gal~aa~~l~~~~~G~y~m~dvL~ 270 (280)
||+||++||+|+.+|+||+|+|+|+|+
T Consensus 239 Fa~Gal~Aa~wl~~k~~g~Y~m~dvLg 265 (265)
T PRK00048 239 FAPGALRAARWLVGKKPGLYGMEDVLG 265 (265)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEHHCC
T ss_conf 899999999998369997995025048
No 4
>pfam05173 DapB_C Dihydrodipicolinate reductase, C-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The C-terminal domain of DapB has been proposed to be the substrate- binding domain.
Probab=100.00 E-value=5.3e-42 Score=307.74 Aligned_cols=136 Identities=50% Similarity=0.780 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 68999999999998611566600899998641678998678999999998532887642211123576765433456501
Q gi|254780279|r 131 GINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIA 210 (280)
Q Consensus 131 Gv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~ 210 (280)
|||+|++++++++++|+ +.|||||+|+||++|+|+|||||++|++.|+++++........ .+++..+.|.+++|+||
T Consensus 1 Gvnll~~l~~~aa~~l~--~~~dieI~E~HH~~K~DaPSGTAl~la~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~I~i~ 77 (137)
T pfam05173 1 GVNLLMKLAEEAAKYLG--DDYDIEIIEIHHRQKKDAPSGTALKLAEAIAEARGEALEVVAD-EREGGTRGRSVNEIGIH 77 (137)
T ss_pred CHHHHHHHHHHHHHHCC--CCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCEEE
T ss_conf 98999999999998558--6488898688335899998789999999999863524444532-22455578877860389
Q ss_pred EEECCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC-CCCCCCHHHHH
Q ss_conf 375288205799998189958999999727376799999999998348-99836888982
Q gi|254780279|r 211 SLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFARGSLTAALWAKSQ-IPGLYSMRDVL 269 (280)
Q Consensus 211 s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~~Fa~Gal~aa~~l~~~-~~G~y~m~dvL 269 (280)
|+|+|+++|+|+|+|.+++|+|+|+|+|.||++||+||++||+|+.++ +||+|+|+|||
T Consensus 78 s~R~g~i~g~H~V~f~~~~E~i~i~H~A~~R~~Fa~Gal~Aa~wl~~~k~~G~y~m~dvL 137 (137)
T pfam05173 78 SVRGGGVVGEHEVIFGGDGERIEITHDAHSREIFAPGALLAAEWLAGKKLPGLYGMEDVL 137 (137)
T ss_pred EEECCCCCEEEEEEEEECCEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEECHHHCC
T ss_conf 996378415799999328828999999588888799999999999569998684022329
No 5
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=99.97 E-value=5.2e-30 Score=225.61 Aligned_cols=121 Identities=36% Similarity=0.666 Sum_probs=115.5
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
|||+|+|+ |||||++++.+.++++++|++++++++++..++|++.+.+.. ++.+.++.+..+.++|||||||+|+++
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~DVvIDFS~p~~~ 78 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL--GVPVTDDLEEVLADADVLIDFTTPEAT 78 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCC--CCEECCCHHHHCCCCCEEEEECCHHHH
T ss_conf 989998898878999999998589968999994389612254310014678--711124477751578889990687899
Q ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCH
Q ss_conf 78887643237215765022231358999874035552100001
Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 85 ~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~ 128 (280)
.+++++|.++++|+|+|||||+++|++.|+++|+++|+++||||
T Consensus 79 ~~~~~~~~~~~~~~ViGTTG~s~~~~~~i~~~a~~ipi~~apNF 122 (122)
T pfam01113 79 LENLELALKHGKPLVIGTTGFTEEQLAELKEAAKKIPIVIAPNF 122 (122)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99999999679988998999999999999998445988982799
No 6
>TIGR02130 dapB_plant dihydrodipicolinate reductase; InterPro: IPR011859 This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome..
Probab=99.96 E-value=9.2e-29 Score=217.06 Aligned_cols=254 Identities=20% Similarity=0.278 Sum_probs=185.2
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CCCCC--CCCHHHHHCC-CC-EEEEEE
Q ss_conf 37999899-8779999999983899789999964898020455366608754-67545--5685785213-55-047631
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MGIKF--SDNLAMAIQS-VD-GIIDFS 79 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~v~i--~~dl~~~~~~-~D-ViIDFT 79 (280)
|.|.|+|+ |+|||.+++... ..+++||-.--. .....++. .+..|..- .--|. ..-+.+++.+ ++ ++||+|
T Consensus 1 ~~~MVNG~~G~MG~~V~~~~~-~~G~~~VP~Sl~-~~~~~~~~-~EV~GK~I~~~~P~~RE~~~~~Vl~KYP~lI~~DYT 77 (275)
T TIGR02130 1 VSVMVNGISGKMGKIVIKAAV-AAGLELVPYSLT-SVIIVENE-VEVAGKEILLLKPSEREKVLSEVLEKYPELIVVDYT 77 (275)
T ss_pred CEEEEECCCCCHHHHHHHHHH-HCCCEEECCCCC-CEEEECCE-EEEECCEEEEECCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf 958872678825688887775-478434302556-33563454-665063888617751467899998638875998047
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH
Q ss_conf 010247888764323721576502223135899987403555210000115689999999999986115-6660089999
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLP-AKDWDFEILE 158 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~-~~~~dieI~E 158 (280)
.|.++.+|++++.|+++|+|.||||=+.+.+.++=.-| ++|-++||||...|+-++.+++.+|+.||. |++|..+++|
T Consensus 78 ~P~AVNDNA~lY~K~~~PFVMGTTGGDR~~L~K~V~~~-~~~~VI~P~M~KQ~VAF~~~~E~l~~~FP~AF~GY~L~V~E 156 (275)
T TIGR02130 78 IPSAVNDNAELYVKVKVPFVMGTTGGDREALAKLVEDA-KIYAVIAPNMAKQVVAFLAAIEILAKEFPTAFEGYKLEVVE 156 (275)
T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCHHHHHHHHHHHC-CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 88731220352002357646537874189999998750-77614367302489999999999863077621472168870
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEECCCCCEEEEEEEECCCCEE--
Q ss_conf 86416789986789999999985328876422111235767654334----565013752882057999981899589--
Q gi|254780279|r 159 MHHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEG----SIGIASLRAGSIVGEHSVVIAGEGESI-- 232 (280)
Q Consensus 159 ~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~I~i~s~R~g~~~g~H~V~f~~~~E~i-- 232 (280)
.|...|.|+ ||||+..-...++- +. .++...++..|.++ -+++----++|. +-|+-.+.+++.++
T Consensus 157 SHQ~~K~D~-SGTA~AV~~~FQKl-G~------~Y~~D~I~~~R~~K~Q~E~~~VPEE~~~GH-AFH~Y~L~S~D~TV~F 227 (275)
T TIGR02130 157 SHQKSKLDA-SGTAKAVVSTFQKL-GV------DYDMDDIEKVRDEKEQIEVVGVPEEYLSGH-AFHLYSLDSADKTVSF 227 (275)
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHC-CC------CCCHHHHHHHCCCCCCEEECCCCCCCCCCC-EEEEEEECCCCCCEEE
T ss_conf 111224675-65302201024224-73------247215763227014162334785202772-4565431189970766
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHCCC
Q ss_conf 99999727376799999999998348-----99836888982688
Q gi|254780279|r 233 TLSHSAYDRRIFARGSLTAALWAKSQ-----IPGLYSMRDVLGIG 272 (280)
Q Consensus 233 ~i~H~a~~R~~Fa~Gal~aa~~l~~~-----~~G~y~m~dvL~l~ 272 (280)
|+.|++..|+|||+|.+.|+.||++| ..-.|+|-|||--|
T Consensus 228 EFQHNVCGR~IYAEGTVDAV~FLA~~i~~~~~~~~yNM~DVLR~G 272 (275)
T TIGR02130 228 EFQHNVCGRKIYAEGTVDAVLFLADKIIAKAEKKIYNMIDVLREG 272 (275)
T ss_pred EEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 554143575054062289999999998863116840000000378
No 7
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.11 E-value=1.1e-09 Score=86.56 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=88.4
Q ss_pred CC-CCCEEEEEECCCHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 99-887379998998779999999983-8997899999648980204553666087546754556857852135504763
Q gi|254780279|r 1 MH-QSPMRISVLGGGRMGQALIKEIHN-NPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 1 M~-~~~IkV~I~GaGkMG~~ii~~i~~-~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280)
|+ +.+|||+|+|||.+|+.+++.+.+ .++++|+++++|+..+.. +.-... . ..+..++++++...+|+||++
T Consensus 1 ~~~~~kmrVgliG~GaIG~~va~~l~~g~~~~~l~~V~~r~~~~~~--~~~~~~--~--~~~~~~~~~~l~~~~DlVVE~ 74 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHA--DFIWGL--R--RPPPVVPLDQLATHADIVVEA 74 (271)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHH--HHHHHC--C--CCCCCCCHHHHHHCCCEEEEC
T ss_conf 9976667799988678999999999758998189999928878889--998735--8--987407889960189999989
Q ss_pred ECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC-CCCEECCCHHHH
Q ss_conf 10102478887643237215765022231358999874035-552100001156
Q gi|254780279|r 79 SSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN-APIVKSSNMSLG 131 (280)
Q Consensus 79 T~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~-~~il~apN~SiG 131 (280)
..|+++.++.+.++++|+.+|+.++|=-.++ +.+.++++. -.=+|-|.=.||
T Consensus 75 A~~~av~~~~~~~L~~G~dlvv~SvGALad~-~~l~~~A~~~g~~i~ipsGAig 127 (271)
T PRK13302 75 APASVLRAIVEPVLAAGKKAIVLSVGALLRN-EDLIDLARQNGGQIIVPTGALL 127 (271)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECHHHHCCC-HHHHHHHHHCCCEEEEECCHHH
T ss_conf 8989999999999975997899755795692-9999999966985998070343
No 8
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.08 E-value=2.6e-09 Score=83.93 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=132.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 73799989987799999999838997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
.|||+|+|||.+|+.+++.+...+..++..++.+..... ........+..+..+++++.+.+|+||++.+|+++
T Consensus 1 MmrVgiiG~GaIG~~va~~l~~~~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~L~~~~DlVVE~A~~~av 74 (265)
T PRK13303 1 MMKVAMIGFGAIAAAVYELLEHDPRLRVDWVIVPEHSVD------AVRRALGRAVQVVSSVDALAQRPDLVVECAGHAAL 74 (265)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCHH------HHHHHHCCCCCCCCCHHHHHHCCCEEEECCCHHHH
T ss_conf 929999854689999999984499727999994685267------78753045886447988982379999989888999
Q ss_pred HHHHHHHHHCCCEEEEEECC-CCHHH-HHHHHHHHCCCC-CEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--
Q ss_conf 78887643237215765022-23135-899987403555-21000011568999999999998611566600899998--
Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTG-FSVKE-NEVISSFARNAP-IVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM-- 159 (280)
Q Consensus 85 ~~~~~~a~~~g~~vViGTTG-~~~e~-~~~l~~~s~~~~-il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~-- 159 (280)
.++.+.++++|+.+++.++| |.++. .+.|.+++++-+ -+|-|.=.||-- ..++.+ +... --.+.++=+
T Consensus 75 ~~~~~~~L~~g~dl~v~SvgALaD~~~~~~l~~~A~~~~~~i~ipsGAigGl---D~l~aa-~~~~---i~~V~~~t~K~ 147 (265)
T PRK13303 75 KEHVVPILKAGIDCAVASVGALADEALRERLEQAAEAGGARLHLLSGAIGGI---DALAAA-KEGG---LDEVRYTGRKP 147 (265)
T ss_pred HHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHHH---HHHHHH-HCCC---CCEEEEEEEEC
T ss_conf 9999999972998899881585798899999999986897599726234406---799998-7189---73899998608
Q ss_pred -------HHHCCCC---------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CEEEE
Q ss_conf -------6416789---------986789999999985328876422111235767654334565013752882-05799
Q gi|254780279|r 160 -------HHRRKLD---------SPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSI-VGEHS 222 (280)
Q Consensus 160 -------HH~~K~D---------aPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~-~g~H~ 222 (280)
...+..| .=+|||...+... .++.|.- ....-- + .+.+...+.=+=.|++ -..|+
T Consensus 148 P~~l~~~~~e~~~~l~~~~~~~~~F~G~area~~~f--P~NvNVa--aa~aLA---g-~G~d~t~v~l~aDP~~~~n~H~ 219 (265)
T PRK13303 148 PKSWRGSPAEQLCDLDALTEPTVIFEGSAREAARLF--PKNANVA--ATIALA---G-LGLDRTRVELIADPAVTRNVHE 219 (265)
T ss_pred HHHHCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHC--CCHHHHH--HHHHHH---C-CCCCCEEEEEEECCCCCCCEEE
T ss_conf 578666715431561037777699731899999877--8617699--999985---3-7966359999978998884799
Q ss_pred EEEECCCCEEEEEEEE----CCHHHHHHHHHHHHHHHHCC
Q ss_conf 9981899589999997----27376799999999998348
Q gi|254780279|r 223 VVIAGEGESITLSHSA----YDRRIFARGSLTAALWAKSQ 258 (280)
Q Consensus 223 V~f~~~~E~i~i~H~a----~~R~~Fa~Gal~aa~~l~~~ 258 (280)
|...++.=+++++-+. -|-+.=+.=|+.++..+.+.
T Consensus 220 I~v~g~~g~~~~~i~n~p~~~NPkTS~laa~Svi~~l~~l 259 (265)
T PRK13303 220 IEARGAFGEFEFEMSGKPLPDNPKTSALTALSAIRALRNR 259 (265)
T ss_pred EEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999355789999967748999830899999999999721
No 9
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.06 E-value=2e-09 Score=84.74 Aligned_cols=230 Identities=13% Similarity=0.092 Sum_probs=133.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 73799989987799999999838-99789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
.|||+|+|||.||+.+++.+.+. .+++|+++++|...+.. ++.. ..+.+...+++++++.+|+||++..|++
T Consensus 1 M~rVgiIG~GaIG~~Va~~l~~g~~~~~L~~V~~r~~~~a~--~~a~-----~~~~~~~~~ld~l~~~~DlVVE~A~~~a 73 (265)
T PRK13304 1 MLKIGIVGCGAIANLITKAIDSGRINAELLAFYDRNLEKAE--NLAE-----KTGAPACLSIDELVKDVDLVVECASQKA 73 (265)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHH--HHHH-----CCCCCCCCCHHHHHHCCCEEEECCCHHH
T ss_conf 94999986578999999998679986499999789878988--7764-----1599712798998338999998989899
Q ss_pred HHHHHHHHHHCCCEEEEEECC-CCHHH-HHHHHHHHCCCC-CEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH----
Q ss_conf 478887643237215765022-23135-899987403555-21000011568999999999998611566600899----
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTG-FSVKE-NEVISSFARNAP-IVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEI---- 156 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG-~~~e~-~~~l~~~s~~~~-il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI---- 156 (280)
+.++.+.++++|+.+++.++| |.++. .+.|.+++++-+ =++-|.=.||= ...++.++ ... -..+.+
T Consensus 74 v~~~~~~~L~~G~dlvv~SvGALaD~~l~~~L~~~A~~~g~~i~ipsGAigG---lD~l~aa~-~~~---l~~V~~~trK 146 (265)
T PRK13304 74 VEDTVPKSLNNGKDVIIMSVGALADKELFLKLYKLAKENGCKIYLPSGAIAG---IDGIKAAS-LGE---IESVTLTTRK 146 (265)
T ss_pred HHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHH---HHHHHHHH-CCC---CCEEEEEEEE
T ss_conf 9999999997599899981368559899999999997379779982613442---78899986-589---7579999874
Q ss_pred -----HHHHHHCCCCCC---------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-CEEE
Q ss_conf -----998641678998---------6789999999985328876422111235767654334565013752882-0579
Q gi|254780279|r 157 -----LEMHHRRKLDSP---------SGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSI-VGEH 221 (280)
Q Consensus 157 -----~E~HH~~K~DaP---------SGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~-~g~H 221 (280)
.-+.+.+..|-. +|||...+... .++.|.- ....--+. .+ ..+.=+=.|++ -..|
T Consensus 147 ~P~~l~~~~~~~~~~l~~~~e~~~~F~G~Area~~~f--P~NvNVa--aa~aLAg~----~~--t~v~i~aDP~~~~n~H 216 (265)
T PRK13304 147 PPHGLEGALEELGINLEDIKEPKVLFEGTASEAVKKF--PQNINVS--ATLSLASI----YP--AKVKIIADPNLDRNVH 216 (265)
T ss_pred CHHHHCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHC--CCHHHHH--HHHHHHCC----CC--EEEEEEECCCCCCCEE
T ss_conf 8689677866604673014677799825899999876--7527899--99986457----96--5999997799988569
Q ss_pred EEEEECCCCEEEEEEEEC----CHHHHHHHHHHHHHHHHCC
Q ss_conf 999818995899999972----7376799999999998348
Q gi|254780279|r 222 SVVIAGEGESITLSHSAY----DRRIFARGSLTAALWAKSQ 258 (280)
Q Consensus 222 ~V~f~~~~E~i~i~H~a~----~R~~Fa~Gal~aa~~l~~~ 258 (280)
+|...++.-+++++-+.. |.+.=+.=|+.++..|.+.
T Consensus 217 ~I~~~g~~g~~~~~i~n~p~~~NPkTS~laa~Svi~~l~~l 257 (265)
T PRK13304 217 EITVKGSFGTFKTRVENVPCPDNPKTSALAAYSAIRLLKDL 257 (265)
T ss_pred EEEEEECCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999335169999966608899840899999999999840
No 10
>PRK11579 putative oxidoreductase; Provisional
Probab=99.05 E-value=3.8e-09 Score=82.76 Aligned_cols=118 Identities=10% Similarity=0.124 Sum_probs=90.6
Q ss_pred CCCCCEEEEEECCCHHHHH-HHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEE
Q ss_conf 9988737999899877999-999998389978999996489802045536660875467545568578521--3550476
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQA-LIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIID 77 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~-ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViID 77 (280)
|++ ||||||+|+|.+|+. .+..+...++++|+++++++..+. .....++++++|++++++ ++|+|+-
T Consensus 1 M~~-~irvgiiG~G~~~~~~h~~~~~~~~~~~l~av~d~~~~~~---------~a~~~~~~~~~~~~~ll~~~~id~V~i 70 (346)
T PRK11579 1 MSD-KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDETKV---------KADWPTVTVVSEPKHLFNDPNIDLIVI 70 (346)
T ss_pred CCC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHH---------HCCCCCCCEECCHHHHHCCCCCCEEEE
T ss_conf 998-8759999362999999999996299919999979899999---------502589953899999945999999999
Q ss_pred EECCCHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEECCCH
Q ss_conf 3101024788876432372157650-22231358999874035552100001
Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 78 FT~P~~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~apN~ 128 (280)
.|++....+.+..|+++||++.+=- =..+-++-+.|.+++++.+++...+|
T Consensus 71 ~tp~~~H~~~~~~al~aGkhv~~EKP~a~~~~~a~~l~~~a~~~g~~l~v~~ 122 (346)
T PRK11579 71 PTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSLGRVLSVFH 122 (346)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 7996789999999998799489538767879999999999987296799965
No 11
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=99.03 E-value=1.8e-09 Score=84.95 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=97.2
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------C---------CCHHHHCC-CCCCCCCCCCCHH
Q ss_conf 887379998998779999999983899789999964898020------4---------55366608-7546754556857
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------G---------QDVGNFVG-ISPMGIKFSDNLA 66 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g---------~d~~~~~~-~~~~~v~i~~dl~ 66 (280)
.+||||+++|+|.||+.++.++..-++++++++.++.-.... + .+++.... ++..-+.+++|.+
T Consensus 15 G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~ 94 (438)
T COG4091 15 GKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAE 94 (438)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHH
T ss_conf 99559987545411067999875068836999842464278899987358720000111166788998628679826535
Q ss_pred HHHC--CCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 8521--355047631-0102478887643237215765022231358999874035552100001156899999999999
Q gi|254780279|r 67 MAIQ--SVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280)
Q Consensus 67 ~~~~--~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280)
.++. ..|||||.| .|....++.-.|+.|+|++|.=---.+---=..|++.+.+.+++|+----=--...+.|.+.+.
T Consensus 95 ~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa~ 174 (438)
T COG4091 95 LIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFAS 174 (438)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEECEEECHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 43238860499976788530147579998567728999754032534889987765475885467897177878999998
No 12
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.01 E-value=1.5e-09 Score=85.63 Aligned_cols=96 Identities=10% Similarity=0.214 Sum_probs=77.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH------HHCCCH-----HHHCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 73799989987799999999838997899999648980------204553-----6660875467545568578521355
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP------LIGQDV-----GNFVGISPMGIKFSDNLAMAIQSVD 73 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~------~~g~d~-----~~~~~~~~~~v~i~~dl~~~~~~~D 73 (280)
++||+|+|+|+.|+.++.++..++||+|+|+.+..++- ..|-++ ......+..|+.+...++++++.+|
T Consensus 2 ~ikV~INGyGtIGkRVAdav~~q~DmelVGV~k~~pd~~a~~a~~kG~~vy~~~~~~~~~F~~aGi~v~Gtiedll~~aD 81 (338)
T PRK04207 2 MIKVAVNGYGTIGKRVADAVAAQDDMEVVGVSKTKPDYEARVAVERGYPLYVADPERLDAFEKAGIEVAGTIEDLLEKAD 81 (338)
T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCHHHHHHCCC
T ss_conf 48999824860558998887359981899786799977899999869967853776665687569866676889752189
Q ss_pred EEEEEECCCHHHHHHHHHHHCCCEEEE
Q ss_conf 047631010247888764323721576
Q gi|254780279|r 74 GIIDFSSPALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 74 ViIDFT~P~~~~~~~~~a~~~g~~vVi 100 (280)
||||+|......++.+.+.++|++.|.
T Consensus 82 vVvDcTP~g~G~~Nk~~Y~~~g~kaIf 108 (338)
T PRK04207 82 IVVDATPGGVGAKNKPLYEKAGVKAIF 108 (338)
T ss_pred EEEECCCCCCCCCCHHHHHHCCCCEEE
T ss_conf 999899976440022768875983799
No 13
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=98.79 E-value=4.2e-08 Score=75.62 Aligned_cols=115 Identities=14% Similarity=0.290 Sum_probs=87.8
Q ss_pred EEEEEECCCHHHHHHHHHHH-HCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECCC
Q ss_conf 37999899877999999998-389978999996489802045536660875467545568578521--355047631010
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIH-NNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSPA 82 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~-~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P~ 82 (280)
|||||+|+|+||+..+..+. ..+++++++++|++..+. +.... ..+++.+++.+++++ ++|+|+-+|.|.
T Consensus 1 iki~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~--~~~~~-----~~~~~~~~~~~~~l~~~~iD~v~I~tp~~ 73 (120)
T pfam01408 1 LRVGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARA--EAVAE-----SFGVPAYSDLEELLADPDVDAVSVATPPG 73 (120)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH--HHHHH-----HHCCCEECCHHHHHHCCCCCEEEECCCHH
T ss_conf 989999077999999999985599978999982999999--99999-----83996788699997377889899908746
Q ss_pred HHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEECCC
Q ss_conf 24788876432372157650-2223135899987403555210000
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKSSN 127 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~apN 127 (280)
...+.+..|+++|+|+.+=- -+.+-++.+.+.+++++..+...-+
T Consensus 74 ~H~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg 119 (120)
T pfam01408 74 LHFELALAALEAGKHVLVEKPLATTVEEAKELVELAEKKGVRLSVG 119 (120)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 1899999999819989996898199999999999999829969995
No 14
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.79 E-value=5.4e-08 Score=74.89 Aligned_cols=120 Identities=16% Similarity=0.246 Sum_probs=93.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 3799989987799999999838-997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
|+|+++|||..|+.+++.+... .++++++++|+...+.... .. ..+.....++++.+...|++|++.+|+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~--~~-----~~~~~~~s~ide~~~~~DlvVEaAS~~Av 73 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL--EA-----SVGRRCVSDIDELIAEVDLVVEAASPEAV 73 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH--HH-----HCCCCCCCCHHHHHHCCCEEEEECCHHHH
T ss_conf 957898233788999999866886436999944887888888--86-----03887635677773024425430788999
Q ss_pred HHHHHHHHHCCCEEEEEECCC-CHHH-HHHHHHHHCCCC-CEECCCHHHHH
Q ss_conf 788876432372157650222-3135-899987403555-21000011568
Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTGF-SVKE-NEVISSFARNAP-IVKSSNMSLGI 132 (280)
Q Consensus 85 ~~~~~~a~~~g~~vViGTTG~-~~e~-~~~l~~~s~~~~-il~apN~SiGv 132 (280)
.++...++++|+++++-++|- .++. .+.++.+++..+ =++.|-=.+|-
T Consensus 74 ~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGG 124 (255)
T COG1712 74 REYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGG 124 (255)
T ss_pred HHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 998699996599889995122068679999999985389479933764012
No 15
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.79 E-value=5.7e-08 Score=74.74 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=90.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-----CCEEEEEEECCCCHHHCCCHHHHCCCCCC--------CC-CCCCCHHHHHC
Q ss_conf 737999899877999999998389-----97899999648980204553666087546--------75-45568578521
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-----SITLHSIIVRSGSPLIGQDVGNFVGISPM--------GI-KFSDNLAMAIQ 70 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-----~~eLv~~i~~~~~~~~g~d~~~~~~~~~~--------~v-~i~~dl~~~~~ 70 (280)
+|||+|+|+|..|+.+++.+.++. +++++++.+++...+.+.|+......... +. ....+.++++.
T Consensus 2 ~i~I~l~G~G~VG~~~~~~L~~~~~~~g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (316)
T PRK08374 2 EVKVSLFGFGTVGRALAEILAEKSRVFGVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKLSNIGDYEVYNFTPEEIVE 81 (316)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHC
T ss_conf 51299993388999999999971887298659999995567634565556655533202543445530120489899834
Q ss_pred --CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC--EECCCHHHHHHHH
Q ss_conf --3550476310102478887643237215765022231358999874035552--1000011568999
Q gi|254780279|r 71 --SVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI--VKSSNMSLGINFL 135 (280)
Q Consensus 71 --~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i--l~apN~SiGv~ll 135 (280)
++||+||.|.-+...++++.|+++|+++|..--+.-..+.++|.+++++..+ .|-...-=|+.++
T Consensus 82 ~~~~dvvVd~t~~~~~~~~~~~al~~G~hVVTANK~~lA~~~~eL~~~A~~~~~~~~yEasVggGiPiI 150 (316)
T PRK08374 82 EVDPDIVVDVSSWDEAHEWYLTALKEGKSVVTSNKPPIANHYDELLNEANERNLGYFFEATVMAGTPII 150 (316)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCH
T ss_conf 889998998799969999999999889929978869998519999999997498499953400020316
No 16
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=98.75 E-value=6.2e-08 Score=74.49 Aligned_cols=241 Identities=15% Similarity=0.196 Sum_probs=125.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC-
Q ss_conf 873799989987799999999838997899999648980204--55366608754675455685785213550476310-
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS- 80 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~- 80 (280)
++||+||+|||++|+.+.+++.++|||||+|++.|.+..... .+.+ +...++.+...+.+||+|-|+.
T Consensus 2 ~kiRaaIVGYGNlG~~V~~ai~~~PDmElvgv~~Rrd~~t~~va~~~~---------vy~V~~~~K~~~dvdv~iLC~gs 72 (326)
T TIGR01921 2 SKIRAAIVGYGNLGKSVEEAIQQAPDMELVGVFRRRDAETLDVAEELA---------VYAVVEDEKELEDVDVLILCTGS 72 (326)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHCCC---------HHHHHHHHHCCCCEEEEEECCCC
T ss_conf 705788862232007999998408980489988707887576112252---------02222223202882599973886
Q ss_pred ----CCHHH----------------------HHHHH-HHHCCCEEEEEECCCCHHHHHHHHHHHC-----CCC-CEECCC
Q ss_conf ----10247----------------------88876-4323721576502223135899987403-----555-210000
Q gi|254780279|r 81 ----PALTL----------------------QSLNI-SAQHNIVHIIGTTGFSVKENEVISSFAR-----NAP-IVKSSN 127 (280)
Q Consensus 81 ----P~~~~----------------------~~~~~-a~~~g~~vViGTTG~~~e~~~~l~~~s~-----~~~-il~apN 127 (280)
|+... ..+.. |.++|.--|| ++||++--...-+-+.+ .+. =+|.|=
T Consensus 73 atd~pe~~p~fA~~~nTvDsfD~H~~Ip~~r~~~DaaA~~~g~VSvi-s~GWDPG~fSi~Rv~geA~lp~g~tyTfwGpG 151 (326)
T TIGR01921 73 ATDLPEQKPYFAAFINTVDSFDIHTDIPDLRRTLDAAAKEAGAVSVI-SAGWDPGLFSINRVLGEAILPKGITYTFWGPG 151 (326)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-EECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 45554345100122101236502242078999999999861987899-83478872679999999750168613323788
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCCCCCHHHH----------------HHHHHHHHHCCCCCCCC
Q ss_conf 115689999999999986115-6660089999864167899867899----------------99999985328876422
Q gi|254780279|r 128 MSLGINFLGFLVETAAEYLLP-AKDWDFEILEMHHRRKLDSPSGTAL----------------LLGEAIANGRKVNLTDH 190 (280)
Q Consensus 128 ~SiGv~ll~~l~~~~a~~l~~-~~~~dieI~E~HH~~K~DaPSGTA~----------------~la~~i~~~~~~~~~~~ 190 (280)
||.|-..-.+-+.=.-+.+.. -+.-| =+|.-.+.-..-=.||-+ ++++.|.. .-..+...
T Consensus 152 lS~GHsdAvrrIdGVk~Av~yTlP~~D--A~E~~R~GE~~~LTg~~~H~R~~~vvl~eG~~~e~ve~eI~t-~~~YFv~y 228 (326)
T TIGR01921 152 LSQGHSDAVRRIDGVKAAVQYTLPIKD--ALEKVRRGEAEELTGKEIHRRECYVVLKEGAEFEKVEAEIKT-MADYFVEY 228 (326)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHCC-CCCCCCCC
T ss_conf 664358988765667888641788578--889862688888875650015899973688783689998347-87765775
Q ss_pred CCCCC-------CCCCCCCCCCCCCCEEEECCCCCE--EEEEEEECCCCEEEEEEEE---CCHHHHHHHHHHHHHHHHC-
Q ss_conf 11123-------576765433456501375288205--7999981899589999997---2737679999999999834-
Q gi|254780279|r 191 MVLNR-------HIQQCARTEGSIGIASLRAGSIVG--EHSVVIAGEGESITLSHSA---YDRRIFARGSLTAALWAKS- 257 (280)
Q Consensus 191 ~~~~~-------~~~~~~~~~~~I~i~s~R~g~~~g--~H~V~f~~~~E~i~i~H~a---~~R~~Fa~Gal~aa~~l~~- 257 (280)
...-. ....++. + =|.|-+|.|+.-+ .|.+-| +++=+. +.-++..- .-||+-++.+
T Consensus 229 et~V~fi~e~~f~~~~tGM-P--HGg~vir~G~sG~~~~q~~Ef-------~lkl~~NP~fTa~vlva-~aRAa~rl~~A 297 (326)
T TIGR01921 229 ETEVNFIDEVDFDLDHTGM-P--HGGFVIRKGESGKTQKQLLEF-------NLKLDRNPDFTASVLVA-YARAAYRLKEA 297 (326)
T ss_pred CEEEEECCCHHHHHCCCCC-C--CCCEEEECCCCCCCCCEEEEE-------EEEECCCCCHHHHHHHH-HHHHHHHHHHC
T ss_conf 0179850731212007898-8--575387105778754327889-------74124783424689999-99988888750
Q ss_pred CCCCCCCHHHH
Q ss_conf 89983688898
Q gi|254780279|r 258 QIPGLYSMRDV 268 (280)
Q Consensus 258 ~~~G~y~m~dv 268 (280)
-++|-|+|-||
T Consensus 298 Gq~Ga~Tv~ev 308 (326)
T TIGR01921 298 GQKGAYTVLEV 308 (326)
T ss_pred CCCCCEEEEEE
T ss_conf 66666168751
No 17
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=98.73 E-value=6.7e-08 Score=74.25 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=96.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHC---CCC--CCCCCCCCCHHHHHCCCCEEEEEECCC
Q ss_conf 999899877999999998389978999996489802045536660---875--467545568578521355047631010
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFV---GIS--PMGIKFSDNLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~---~~~--~~~v~i~~dl~~~~~~~DViIDFT~P~ 82 (280)
|.|+|+|+||+.++..+.++.+..=+-+.+++..+... +.... ... ..++.-.+++...++..|+||+...|.
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~diVv~~~p~~ 78 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSLEKAQA--LAAPKLGLRFIAIAVDADNYEALAALLKEGDLVINLAPPF 78 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH--HHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCHH
T ss_conf 98989778799999999728998869999898899898--7752369853899957789999999871289999998434
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC--EECCCHHHHHHHHHHHHHHHHHHHC----CCCCCHHHH
Q ss_conf 2478887643237215765022231358999874035552--1000011568999999999998611----566600899
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI--VKSSNMSLGINFLGFLVETAAEYLL----PAKDWDFEI 156 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i--l~apN~SiGv~ll~~l~~~~a~~l~----~~~~~dieI 156 (280)
.....++.|+++|++.| ++.+..++...+.+.+++..+ +..-=++-|+. .-++..+...|. .-.+|++..
T Consensus 79 ~~~~i~~~c~~~g~~yv--d~s~~~~~~~~l~~~a~~ag~~~~~~~G~~PGi~--~~~a~~~~~~l~~~~~~i~~~~~~~ 154 (384)
T pfam03435 79 LSLTVLKACIETGVHYV--DTSYLREAQLALHEKAKEAGVTAVLGCGFDPGLV--SVFAKYALDDLADELAKVLSVKIHC 154 (384)
T ss_pred HCHHHHHHHHHCCCCEE--ECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHH--HHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 16999999997399757--5343668899999977656968996788898846--8999999999875258289999842
Q ss_pred HHHHHHCCCCCCCHH
Q ss_conf 998641678998678
Q gi|254780279|r 157 LEMHHRRKLDSPSGT 171 (280)
Q Consensus 157 ~E~HH~~K~DaPSGT 171 (280)
=+ +....|-|.+=
T Consensus 155 Gg--~p~~~~~p~~y 167 (384)
T pfam03435 155 GG--RPEPKDNGLEF 167 (384)
T ss_pred CC--CCCCCCCCCCC
T ss_conf 68--88888776542
No 18
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.71 E-value=2.5e-07 Score=70.32 Aligned_cols=126 Identities=13% Similarity=0.240 Sum_probs=91.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCC---------CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CC
Q ss_conf 8737999899877999999998389---------978999996489802045536660875467545568578521--35
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNP---------SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SV 72 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~---------~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~ 72 (280)
.+|||||+|+|..|+.+++.+.++. +++++++++|+..+..+.+. .+..+++|..+++. ++
T Consensus 2 ~~ikIgl~G~GtVG~gv~~il~~~~~~i~~~~g~~~~i~~i~~r~~~k~r~~~~--------~~~~~t~d~~~i~~d~~i 73 (432)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDL--------SGYLLTTDPEELVNDPDI 73 (432)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--------CCCEEECCHHHHHCCCCC
T ss_conf 553899998780699999999980999999869976999999689753558999--------855554799999438999
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHHH
Q ss_conf 50476310-10247888764323721576502223135899987403555--2100001156899999
Q gi|254780279|r 73 DGIIDFSS-PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLGF 137 (280)
Q Consensus 73 DViIDFT~-P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~~ 137 (280)
||||+..- -+...++++.|+++||++|..--++-.+.-++|.+++++.. +.+-.-..=|+.++.-
T Consensus 74 divVEliGG~~~A~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~fEAaV~GGIPiI~~ 141 (432)
T PRK06349 74 DIVVELMGGIEPARELILAALEAGKHVVTANKALLAVHGNELFAAAEEKGVDLYFEAAVAGGIPIIKA 141 (432)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHH
T ss_conf 89999669950799999999985996892587999867999999998719649996322466120699
No 19
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.66 E-value=1.6e-07 Score=71.63 Aligned_cols=239 Identities=18% Similarity=0.165 Sum_probs=136.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHC--CCC--CCCCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 737999899877999999998389978999996489802045536660--875--4675455685785213550476310
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFV--GIS--PMGIKFSDNLAMAIQSVDGIIDFSS 80 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~--~~~--~~~v~i~~dl~~~~~~~DViIDFT~ 80 (280)
++||.|+|+|+.|+.++..++.+.+.++. +.+|+..+.. .+.... ..+ ..++.-.+.+.++++..|+||..-.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs~~~~~--~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRSKEKCA--RIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEE-EEECCHHHHH--HHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECC
T ss_conf 97289989866679999999857896299-9848888999--98753346631699425675889998725778999287
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHH
Q ss_conf 10247888764323721576502223135899987403555--21000011568999999999998611-5666008999
Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLGFLVETAAEYLL-PAKDWDFEIL 157 (280)
Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~~l~~~~a~~l~-~~~~~dieI~ 157 (280)
|......++.|+++|+++| +|-+.++...+++..+++++ ++..--|+-|+ -.-++..+++.+. .-+ +|.|.
T Consensus 78 ~~~~~~i~ka~i~~gv~yv--Dts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi--~nv~a~~a~~~~~~~i~--si~iy 151 (389)
T COG1748 78 PFVDLTILKACIKTGVDYV--DTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGI--TNVLAAYAAKELFDEIE--SIDIY 151 (389)
T ss_pred CHHHHHHHHHHHHHCCCEE--ECCCCCCHHHHHHHHHHHCCCEEECCCCCCCCH--HHHHHHHHHHHHHCCCC--EEEEE
T ss_conf 0542999999998599889--754677506565489887490797166768645--79999999998616564--89999
Q ss_pred HHHHHCCCCCCCHHHHHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC---CCCCEEEEEEEECCCCEE
Q ss_conf 986416789986789999--999985328876422111235767654334565013752---882057999981899589
Q gi|254780279|r 158 EMHHRRKLDSPSGTALLL--GEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRA---GSIVGEHSVVIAGEGESI 232 (280)
Q Consensus 158 E~HH~~K~DaPSGTA~~l--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~---g~~~g~H~V~f~~~~E~i 232 (280)
--+-....|-|=+=|... --.+.+-... ...-++| .. -++.=.+.|. ..++|.+.+.+...+|..
T Consensus 152 ~g~~g~~~~~~l~ya~tws~e~~l~e~~~p-----~~~~~~G---k~--~~v~~~~~~~~~~~~~~G~~~~y~~~~~el~ 221 (389)
T COG1748 152 VGGLGEHGDNPLGYATTWSPEINLREYTRP-----ARYWENG---KW--VEVDPLEEREVFEFPVIGYGDVYAFYHDELR 221 (389)
T ss_pred EECCCCCCCCCCCCEEEECHHHHHHHHCCC-----EEEEECC---EE--EEECCCCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf 825898988776532662578868975475-----5998478---79--9816656323324677873258953782277
Q ss_pred EEE------EEECCHHHHH-HHHHHHHHHHHCCCCCCCC
Q ss_conf 999------9972737679-9999999998348998368
Q gi|254780279|r 233 TLS------HSAYDRRIFA-RGSLTAALWAKSQIPGLYS 264 (280)
Q Consensus 233 ~i~------H~a~~R~~Fa-~Gal~aa~~l~~~~~G~y~ 264 (280)
++- -+...|..|- +|-+.-.+-|. .-|+.+
T Consensus 222 sL~~~i~~~~~~~~~~t~r~~g~~~~i~~L~--~lGll~ 258 (389)
T COG1748 222 SLVKTIPGVVRTRFEMTFRYPGHLEVIKALR--DLGLLS 258 (389)
T ss_pred HHHHHCCCCCEEEEEEECCCHHHHHHHHHHH--HCCCCC
T ss_conf 7977575400046776048640999999998--757886
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.62 E-value=3.7e-07 Score=69.12 Aligned_cols=132 Identities=13% Similarity=0.151 Sum_probs=87.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC---------CCEEEEEEECCCCHH--HCCCHHHHCCCCC-------C-CCCCCCCH
Q ss_conf 737999899877999999998389---------978999996489802--0455366608754-------6-75455685
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP---------SITLHSIIVRSGSPL--IGQDVGNFVGISP-------M-GIKFSDNL 65 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~---------~~eLv~~i~~~~~~~--~g~d~~~~~~~~~-------~-~v~i~~dl 65 (280)
+|||+|+|+|..|+.+++++.++. +++++++.+++..-+ .|-|+........ . ......+.
T Consensus 2 ~i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~v~~i~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (342)
T PRK06270 2 EMKIALVGFGGVGQGLAELLAMKNEYLKKEYGLDLKVVAIADSSGAAIDPNGLDLELALKVKEETGKLADYPEGGGEIDG 81 (342)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 63199987688999999999987999999849978999999165433576678989998766411650003200012789
Q ss_pred HHHHC--CCCEEEEEECC-----CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHH
Q ss_conf 78521--35504763101-----0247888764323721576502223135899987403555--210000115689999
Q gi|254780279|r 66 AMAIQ--SVDGIIDFSSP-----ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLG 136 (280)
Q Consensus 66 ~~~~~--~~DViIDFT~P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~ 136 (280)
.+.++ ++||+||.|.. +...++++.|+++|+++|..--+.-....++|.+++++.. ++|-.+..=|+.++.
T Consensus 82 ~~~~~~~~~dvvve~t~~~~~~~e~a~~~~~~aL~~G~~VVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGlPiI~ 161 (342)
T PRK06270 82 LEVIKSAEADVLVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKENGVCFRYEATVGGAMPIIR 161 (342)
T ss_pred HHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHH
T ss_conf 99842779998999304467774889999999997799499988717898899999999972984998544111535389
No 21
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.61 E-value=1.2e-06 Score=65.54 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=88.9
Q ss_pred CCEEEEEECCC-HHHHHHHHHHHHCCC-CEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEE
Q ss_conf 87379998998-779999999983899-789999964898020455366608754675455685785213--55047631
Q gi|254780279|r 4 SPMRISVLGGG-RMGQALIKEIHNNPS-ITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFS 79 (280)
Q Consensus 4 ~~IkV~I~GaG-kMG~~ii~~i~~~~~-~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT 79 (280)
.+|||||+|+| .+++..+..+...++ ++++++++++..+ .+...+..+.. ..++|+++++.. +|+|+-.|
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~--a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iat 75 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPER--AEAFAEEFGIA----KAYTDLEELLADPDIDAVYIAT 75 (342)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHH--HHHHHHHCCCC----CCCCCHHHHHCCCCCCEEEEEC
T ss_conf 93279998987678888899997388746999996499899--99999981997----4529999994599998899969
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCC--CEECCCHHHH
Q ss_conf 01024788876432372157650-2223135899987403555--2100001156
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAP--IVKSSNMSLG 131 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~--il~apN~SiG 131 (280)
.|....+++..|+++||||++=- =+.+-++.+.|-+++++.. +..+.|+-..
T Consensus 76 p~~~H~~~a~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~Rf~ 130 (342)
T COG0673 76 PNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFD 130 (342)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEHHHCC
T ss_conf 8067799999999779969992899899999999999999759949998846549
No 22
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=98.59 E-value=4e-07 Score=68.95 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHCC---CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECCCHHHH
Q ss_conf 99877999999998389---978999996489802045536660875467545568578521--3550476310102478
Q gi|254780279|r 12 GGGRMGQALIKEIHNNP---SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSPALTLQ 86 (280)
Q Consensus 12 GaGkMG~~ii~~i~~~~---~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P~~~~~ 86 (280)
|+|..|+.+++.+.+++ +++++++++|+.....- .......++++|+++++. ++|+||+.+.++...+
T Consensus 1 G~G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~-------~~~~~~~~~~~d~~~ll~~~~iDvVVE~~g~~~~~~ 73 (116)
T pfam03447 1 GCGAIGSGLLELLLRQQEEIPLELVAVADRDLLSKAR-------AALLGDEPVTLDLDDLVADPRPDVVVECASSEAVAE 73 (116)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCC-------CCCCCCCEEECCHHHHHCCCCCCEEEECCCCHHHHH
T ss_conf 9870289999999949203567999998478343232-------124666715779999961889989998899489999
Q ss_pred HHHHHHHCCCEEEEEECCCCHH--HHHHHHHHHCCCCC
Q ss_conf 8876432372157650222313--58999874035552
Q gi|254780279|r 87 SLNISAQHNIVHIIGTTGFSVK--ENEVISSFARNAPI 122 (280)
Q Consensus 87 ~~~~a~~~g~~vViGTTG~~~e--~~~~l~~~s~~~~i 122 (280)
++..|+++|+++|+...+.-.+ ..++|.++|++.++
T Consensus 74 ~~~~aL~~GkhVVTaNK~~lA~~~~~~eL~~~A~~~g~ 111 (116)
T pfam03447 74 YVLKALKAGKHVVTASKGALADLALRERLREAAEASGV 111 (116)
T ss_pred HHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 99999987998999078896785799999999998399
No 23
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.58 E-value=7.6e-07 Score=67.02 Aligned_cols=122 Identities=11% Similarity=0.191 Sum_probs=83.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC-CCCEEEEEECC
Q ss_conf 73799989987799999999838--9978999996489802045536660875467545568578521-35504763101
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ-SVDGIIDFSSP 81 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~-~~DViIDFT~P 81 (280)
++||+|+|||.||+.+++.+..+ +.+++++...+.. |..... ...+.+.+++++++. .+|+||++..+
T Consensus 2 ~~rVgiiG~GAIG~~Va~~l~~~~~~~~~l~~~~~~~~------~~~~~~---~~~~~~~~~~~~lla~~pDlVvE~As~ 72 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA------DLPPAL---AGRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCHH------HHHHHH---CCCCCCCCCHHHHHCCCCCEEEECCCH
T ss_conf 51799985169999999998617776528999815335------555553---256654577577741289999989798
Q ss_pred CHHHHHHHHHHHCCCEEEEEECC-CCHHH-HHHHHHHHCCCC-CEECCCHHHH-HHHH
Q ss_conf 02478887643237215765022-23135-899987403555-2100001156-8999
Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTG-FSVKE-NEVISSFARNAP-IVKSSNMSLG-INFL 135 (280)
Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG-~~~e~-~~~l~~~s~~~~-il~apN~SiG-v~ll 135 (280)
+++.++.+.++++|+.+|+-++| |.++. .+.|.+++++-+ =++-|.=.|| +-.+
T Consensus 73 ~Av~~~a~~vL~~G~dlvv~SvGALaD~~l~~~l~~~A~~~g~~i~ipsGAIgGlD~l 130 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYL 130 (267)
T ss_pred HHHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHCHHHH
T ss_conf 9999999999975996999823784798899999999997798699747301046899
No 24
>PRK10206 putative dehydrogenase; Provisional
Probab=98.54 E-value=1.7e-06 Score=64.63 Aligned_cols=116 Identities=9% Similarity=0.094 Sum_probs=81.5
Q ss_pred CEEEEEECCCHHHHHH-HHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEECC
Q ss_conf 7379998998779999-999983899789999964898020455366608754675455685785213--5504763101
Q gi|254780279|r 5 PMRISVLGGGRMGQAL-IKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSSP 81 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~i-i~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~P 81 (280)
+|||||+|+|..|+.. +-.+.+.++...++++++...+ ...... .-.++.+++|+++++.+ .|+|+-.|++
T Consensus 2 ~irvaiiG~G~~~~~fH~P~i~~~~~~~~v~~v~~~~~~-~~~~a~-----~~~~~~~~~~~~~ll~~~~id~V~i~tP~ 75 (345)
T PRK10206 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAK-PEEQAP-----IYSHIHFTSDLDEVLNDPDVKLVVVCTHA 75 (345)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCHH-HHHHHH-----HCCCCCEECCHHHHHCCCCCCEEEECCCC
T ss_conf 247999926499999989999638995799999788761-888887-----76998122899999549999999987995
Q ss_pred CHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEECC
Q ss_conf 024788876432372157650-222313589998740355521000
Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKSS 126 (280)
Q Consensus 82 ~~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~ap 126 (280)
....++++.|+++||++++=- -+.+-++-++|-+++++.+++...
T Consensus 76 ~~H~~~a~~al~aGkhV~~EKP~~~~~~ea~~l~~~a~~~g~~l~v 121 (345)
T PRK10206 76 DSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTP 121 (345)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 7899999999978992898036649899999999999970997999
No 25
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=98.49 E-value=9.9e-07 Score=66.24 Aligned_cols=114 Identities=19% Similarity=0.305 Sum_probs=88.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECCC
Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521--355047631010
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSPA 82 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P~ 82 (280)
.|+|.+.|.|..|.+.++.+.++++++|+++++++. .+.|+|++++.+..+.++..+++++..+. ..+++.+--.|.
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~-ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~~ 80 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSA-AKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLPS 80 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCCCHHHHCCCCCCEEEEECCCCCCEECCCCCEEEECCCCH
T ss_conf 730589625557799999997088971689995174-0013017876488885168652322200026663156102612
Q ss_pred HHHHHHHHHHHCCCEEEE-EEC-----CCCHHHHHHHHHHHCCCC
Q ss_conf 247888764323721576-502-----223135899987403555
Q gi|254780279|r 83 LTLQSLNISAQHNIVHII-GTT-----GFSVKENEVISSFARNAP 121 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vVi-GTT-----G~~~e~~~~l~~~s~~~~ 121 (280)
.+-.+.++..|+++|. |.+ ++.++..+++.++++..+
T Consensus 81 --~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraG 123 (350)
T COG3804 81 --VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAG 123 (350)
T ss_pred --HHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHCHHHHHHHCC
T ss_conf --9999999975870661585334778679678655578998538
No 26
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.48 E-value=1.3e-06 Score=65.48 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=84.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCH--HHCCCHHHHCCCCCCCCCCC----CCHHHHH
Q ss_conf 73799989987799999999838---------997899999648980--20455366608754675455----6857852
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN---------PSITLHSIIVRSGSP--LIGQDVGNFVGISPMGIKFS----DNLAMAI 69 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~---------~~~eLv~~i~~~~~~--~~g~d~~~~~~~~~~~v~i~----~dl~~~~ 69 (280)
+|||+|+|+|..|+.+++++.++ -+++++++++|+... ..|.++............+. ...+...
T Consensus 2 ~i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~i~~i~~s~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (341)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSAAIEKYIEHHPEERA 81 (341)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCHHHHH
T ss_conf 60299995388999999999999999999749977999999686011376688878987503530235555542346663
Q ss_pred ---CCCCEEEEEECC-----CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC--CCEECCCHHHHHHHH
Q ss_conf ---135504763101-----024788876432372157650222313589998740355--521000011568999
Q gi|254780279|r 70 ---QSVDGIIDFSSP-----ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA--PIVKSSNMSLGINFL 135 (280)
Q Consensus 70 ---~~~DViIDFT~P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~--~il~apN~SiGv~ll 135 (280)
...||+||.|.. +...++++.|+++|+++|..--+.-....++|.+++++. .+.|-.+.-=|+.++
T Consensus 82 ~~~~~~~i~vd~t~~~~~~~~~a~~~i~~al~~g~~VVTANK~~la~~~~el~~la~~~~~~~~yEasVggGiPiI 157 (341)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKQMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTL 157 (341)
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHH
T ss_conf 0355676699911221357645899999999729968932747777539999999997399189970401140252
No 27
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.43 E-value=2.2e-06 Score=63.88 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=86.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC-------CCEEEEEEECCCCHH--HCCCHHHHCCCCCCCCCCCC-----CHHHHH-C
Q ss_conf 37999899877999999998389-------978999996489802--04553666087546754556-----857852-1
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNP-------SITLHSIIVRSGSPL--IGQDVGNFVGISPMGIKFSD-----NLAMAI-Q 70 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~-------~~eLv~~i~~~~~~~--~g~d~~~~~~~~~~~v~i~~-----dl~~~~-~ 70 (280)
|||+|+|+|..|+.+++.+.++. +++++++.++....+ .+-|+.........+..... ..+..+ .
T Consensus 1 i~I~l~G~G~VG~~v~~~l~~~~~~~~~~~~i~vv~v~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCCCCHHHHHCCCCCCCCCCCCHHCCCHHHHHCC
T ss_conf 97999957889999999999749999848993799999610101465688988852122323444442000444566456
Q ss_pred CCCEEEEEECC--CH--HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHHHHHH
Q ss_conf 35504763101--02--47888764323721576502223135899987403555--2100001156899999999
Q gi|254780279|r 71 SVDGIIDFSSP--AL--TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLGFLVE 140 (280)
Q Consensus 71 ~~DViIDFT~P--~~--~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~~l~~ 140 (280)
.+||+||.|.. .. .+.+++.|+++|+++|..--+.-....++|.+++++.. +.|-.+..=|+.++ ++++
T Consensus 81 ~~dvive~~~~~~~g~~~~~~~~~aL~~GkhVVTANK~~la~~~~eL~~lA~~~~~~~~yEAsV~gGiPii-~~l~ 155 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLF-SLRD 155 (326)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHH-HHHH
T ss_conf 89879993027754422699999999879969977960666619999999998098499975403662317-9888
No 28
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=98.42 E-value=2.1e-06 Score=63.96 Aligned_cols=126 Identities=19% Similarity=0.233 Sum_probs=78.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-----CCCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 379998998779999999983899789999964898020-----45536660875-467545568578521355047631
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI-----GQDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~-----g~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViIDFT 79 (280)
.||+|+|+|.||.+++..+.++. .+ |-.+.|+..... +...-.+.+.. +.++.+++|+++++.++|+||=..
T Consensus 1 kKI~IiGaG~wGtAla~~la~n~-~~-V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiiav 78 (159)
T pfam01210 1 KKIAVLGAGSWGTALAKVLARNG-HE-VRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAV 78 (159)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CE-EEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEEC
T ss_conf 98999996999999999999879-98-99999043666778866978210478645553054288999983798999917
Q ss_pred CCCHHHHHHHHH---HHCCCEEEEEECCCCHHHHHHHHHHHC------CCCCEECCCHHHHHH
Q ss_conf 010247888764---323721576502223135899987403------555210000115689
Q gi|254780279|r 80 SPALTLQSLNIS---AQHNIVHIIGTTGFSVKENEVISSFAR------NAPIVKSSNMSLGIN 133 (280)
Q Consensus 80 ~P~~~~~~~~~a---~~~g~~vViGTTG~~~e~~~~l~~~s~------~~~il~apN~SiGv~ 133 (280)
.+..+.+.++.. +..+.++|++|-|+..+....+.++-+ .+.+|-.|||+.-+.
T Consensus 79 ps~~~~~~~~~i~~~~~~~~~iv~~sKGie~~t~~~~s~i~~~~~~~~~~~vlsGPs~A~Ev~ 141 (159)
T pfam01210 79 PSQALREVLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEIIEEELPINPIAVLSGPSHAEEVA 141 (159)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHH
T ss_conf 488999999999865576556888751442788752999999878998739995786499997
No 29
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.35 E-value=3e-06 Score=62.94 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=85.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HC---CCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 737999899877999999998389978999996489802--04---5536660875-46754556857852135504763
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IG---QDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g---~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViIDF 78 (280)
.|||+|+|+|.||.+++..+.++. .++. .+.|++... +. .+.-.+.+.. +.++.+++|++++++++|+|| |
T Consensus 1 MmkI~ViGaGawGtAlA~~la~n~-~~V~-lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l~~ad~ii-i 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAILLARNG-HDVV-LWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEALADADLIL-V 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEE-EEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEE-E
T ss_conf 988999898999999999999789-9789-998389999999964988656897858998389789999983798499-9
Q ss_pred ECCCH-HHHHHHHH---HHCCCEEEEEECCCCHHHHH----HHHHHH-CC--CCCEECCCHHHHHHH-----------HH
Q ss_conf 10102-47888764---32372157650222313589----998740-35--552100001156899-----------99
Q gi|254780279|r 79 SSPAL-TLQSLNIS---AQHNIVHIIGTTGFSVKENE----VISSFA-RN--APIVKSSNMSLGINF-----------LG 136 (280)
Q Consensus 79 T~P~~-~~~~~~~a---~~~g~~vViGTTG~~~e~~~----~l~~~s-~~--~~il~apN~SiGv~l-----------l~ 136 (280)
..|.. +.+.++.. ++.+.++|++|=|+..+... .+++.- .+ ..++..|||+.-+.- -.
T Consensus 78 avPs~~~~~~l~~i~~~i~~~~~li~~tKGle~~t~~~~seii~~~l~~~~~~~~lsGP~~A~Eva~~~pt~~vias~~~ 157 (325)
T PRK00094 78 AVPSHAFREVLKQLKPLLRPDAPIVWATKGIEAGTGKLLSEVAEEELPDQAPLAVLSGPSFAKEVAQGLPTALVIASTDE 157 (325)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCEEEEECCCCH
T ss_conf 45769999999999864689974999765562488751999999973999867998177429999808983999507999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998611
Q gi|254780279|r 137 FLVETAAEYLL 147 (280)
Q Consensus 137 ~l~~~~a~~l~ 147 (280)
.+++..++.|.
T Consensus 158 ~~~~~~~~lf~ 168 (325)
T PRK00094 158 ELAKEVQQLFH 168 (325)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999967
No 30
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.33 E-value=4.7e-06 Score=61.57 Aligned_cols=133 Identities=11% Similarity=0.151 Sum_probs=84.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH-HCCCC
Q ss_conf 873799989987799999999838---------99789999964898020455366608754675455685785-21355
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNN---------PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA-IQSVD 73 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~---------~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~-~~~~D 73 (280)
.+|||+|+|.|..|+.+++.+.++ .+++++++.+|+.+...+.|.... ...........+.+.+ ....|
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA-EVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCH-HHHEECCCCCCCHHHHCCCCCC
T ss_conf 548999983371429999999982688876328726999999615301135665332-3430055324427665045688
Q ss_pred EEEEEECC--CHHH--HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC--CEECCCHHHHHHHHHH
Q ss_conf 04763101--0247--888764323721576502223135899987403555--2100001156899999
Q gi|254780279|r 74 GIIDFSSP--ALTL--QSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP--IVKSSNMSLGINFLGF 137 (280)
Q Consensus 74 ViIDFT~P--~~~~--~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~--il~apN~SiGv~ll~~ 137 (280)
|+|+.+.+ +... +++..++++|+|+|..--+.-.....+|.+++++.. ++|-.+-.=|+.++..
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~ 150 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKL 150 (333)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHH
T ss_conf 7985576668741238999999975996997896476766999999999739858998550257543789
No 31
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=98.30 E-value=5.5e-07 Score=67.98 Aligned_cols=92 Identities=16% Similarity=0.274 Sum_probs=68.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC------HHHCCCHH----H-HCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 9998998779999999983899789999964898------02045536----6-60875467545568578521355047
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS------PLIGQDVG----N-FVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~------~~~g~d~~----~-~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
|||.|||-.|+.++.+|.+++||+|+|+.-++++ ...|-+++ + ...-++.|+++...++++++..|+||
T Consensus 1 VgiNGYGTIGKRVAdAv~kQdDMklvGVtKtsPdfEA~~A~e~Gi~~Y~~~~e~~~~FEeaGi~V~GT~edL~ek~DIvV 80 (335)
T TIGR01546 1 VGINGYGTIGKRVADAVIKQDDMKLVGVTKTSPDFEAFIAKEKGIDIYVAAEEFLKKFEEAGIKVAGTVEDLLEKVDIVV 80 (335)
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHCCCEEECCHHHHHHHCCEEE
T ss_conf 92345356222444441369982377411689838888887679326426704431254368704425787310428888
Q ss_pred EEECCCHHHHHHH-HHHHCCCEEE
Q ss_conf 6310102478887-6432372157
Q gi|254780279|r 77 DFSSPALTLQSLN-ISAQHNIVHI 99 (280)
Q Consensus 77 DFT~P~~~~~~~~-~a~~~g~~vV 99 (280)
|+|+-.....|=+ .+.+.|...+
T Consensus 81 D~TP~G~GaknK~G~Yek~g~kAi 104 (335)
T TIGR01546 81 DATPEGVGAKNKEGIYEKLGLKAI 104 (335)
T ss_pred ECCCCCCCCCCCCHHHHHHCCEEE
T ss_conf 568787443231103665076136
No 32
>KOG2741 consensus
Probab=98.29 E-value=1.2e-05 Score=58.81 Aligned_cols=135 Identities=15% Similarity=0.188 Sum_probs=92.5
Q ss_pred CCC-CCEEEEEECCCHHHHHHHHHHHHCC--CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEE
Q ss_conf 998-8737999899877999999998389--9789999964898020455366608754675455685785213--5504
Q gi|254780279|r 1 MHQ-SPMRISVLGGGRMGQALIKEIHNNP--SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGI 75 (280)
Q Consensus 1 M~~-~~IkV~I~GaGkMG~~ii~~i~~~~--~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DVi 75 (280)
|.+ .+||+||+|+|+|++..++.+...+ ++.++++.+++... .+......+.+ ...++...+++++. +|||
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~--A~~fAq~~~~~--~~k~y~syEeLakd~~vDvV 76 (351)
T KOG2741 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLER--AKEFAQRHNIP--NPKAYGSYEELAKDPEVDVV 76 (351)
T ss_pred CCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH--HHHHHHHCCCC--CCCCCCCHHHHHCCCCCCEE
T ss_conf 998860589886046778999997214754582799996552788--99999865999--87425579988249876879
Q ss_pred EEEECCCHH-HHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEEC----CCHHHHHHHHHHHHH
Q ss_conf 763101024-788876432372157650-22231358999874035552100----001156899999999
Q gi|254780279|r 76 IDFSSPALT-LQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKS----SNMSLGINFLGFLVE 140 (280)
Q Consensus 76 IDFT~P~~~-~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~a----pN~SiGv~ll~~l~~ 140 (280)
. ++.|... ++.+..|++++||+.+=. ...+.+|.++|=++|+.-+++.. +-|+--+..++.++.
T Consensus 77 y-i~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~ 146 (351)
T KOG2741 77 Y-ISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS 146 (351)
T ss_pred E-ECCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHH
T ss_conf 9-679980089999999975995786565538899999999999976948876444210738999999971
No 33
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.28 E-value=1.7e-05 Score=57.79 Aligned_cols=118 Identities=23% Similarity=0.314 Sum_probs=75.3
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 998873799989987799999999838997--899999648980204553666087546754556857852135504763
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280)
|+. ||+++|+|+||+++++.+.+..-. +-+.+.+++..+. +.+ ....++.+..+..++.+.+|+||=.
T Consensus 1 M~k---kI~fIG~GnMg~Aii~Gl~~~~~~~~~~i~~~~~~~~~~--~~~-----~~~~~~~~~~~~~e~~~~~Dii~La 70 (272)
T PRK12491 1 MNK---QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNL--KNA-----SDKYGITITTNNNEVANSADILILS 70 (272)
T ss_pred CCC---EEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH--HHH-----HHHCCCEEECCHHHHHHHCCEEEEE
T ss_conf 998---699985679999999999978898967699969799999--999-----9971978866879997319999999
Q ss_pred ECCCHHHHHHHHH---HHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHH
Q ss_conf 1010247888764---3237215765022231358999874035552100-00115
Q gi|254780279|r 79 SSPALTLQSLNIS---AQHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSL 130 (280)
Q Consensus 79 T~P~~~~~~~~~a---~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~Si 130 (280)
..|....+.++.. ++.+..+|+=--|.+-++++ +.+..+.+|+++ ||+..
T Consensus 71 VKP~~~~~vl~~l~~~~~~~~lviSi~AGi~i~~l~--~~l~~~~~vvR~MPN~~a 124 (272)
T PRK12491 71 IKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTE--NEFDRKLKVIRVMPNTPV 124 (272)
T ss_pred ECHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH--HHHCCCCCEEEECCCHHH
T ss_conf 577899999999865526991899984899989999--981899857997897699
No 34
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.25 E-value=1.4e-05 Score=58.34 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=77.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 873799989987799999999838997--899999648980204553666087546754556857852135504763101
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280)
+.|||+++|+|+||+++++.+.+...+ +-+.+.+|.+.... ..+ ....++.++.|..++++++|+||=..-|
T Consensus 2 ~mm~I~fIG~GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~~~----~~l--~~~~~v~~~~~~~~~~~~~diI~LaVKP 75 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRL----QEL--HQKYGVKGTHNKKELLTDANILFLAMKP 75 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH----HHH--HHHHCCEEECCHHHHHHHCCEEEEECCH
T ss_conf 9788999876899999999999787999757999789849999----999--9971966637779998449999995278
Q ss_pred CHHHHHHHHH---HHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHHHHH
Q ss_conf 0247888764---3237215765022231358999874035552100-00115689
Q gi|254780279|r 82 ALTLQSLNIS---AQHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSLGIN 133 (280)
Q Consensus 82 ~~~~~~~~~a---~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~SiGv~ 133 (280)
....+.++.. +..++.+|+=..|.+-++++.+ +.++.+|+++ ||+..-+.
T Consensus 76 ~~~~~v~~~i~~~~~~~~~iISi~AGi~~~~l~~~--l~~~~~ivR~MPN~~~~vg 129 (279)
T PRK07679 76 KDVAEALTPFKEYIHNNVLIISLLAGVSTHSIRNL--LQKDVPIIRAMPNTSAAIL 129 (279)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH--CCCCCCEEEECCCHHHHHH
T ss_conf 99999999987545899299997478889999975--2999857983597678850
No 35
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.25 E-value=1.9e-05 Score=57.50 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=76.3
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 998873799989987799999999838997--899999648980204553666087546754556857852135504763
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280)
|.+ +.||+++|+|+||+++++.+.+.... +-+.+.++.+.... ..+. ...++.+..|..+..+++|+|+=+
T Consensus 1 m~~-~~kI~fIG~GnMg~Aii~gll~~~~~~~~~i~v~~~~~~~~~-~~l~-----~~~~i~~~~~~~~~~~~~d~Iila 73 (245)
T PRK07634 1 MLT-KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKL-DQLQ-----ARYNVSTTTDWKQHVTSVDTIVLA 73 (245)
T ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHH-----HHCCCEECCCHHHHHHHCCEEEEE
T ss_conf 999-991999875899999999999779999605999699999999-9999-----971974227779998559999999
Q ss_pred ECCCHHHHHHHHHH--HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHH
Q ss_conf 10102478887643--237215765022231358999874035552100-00115
Q gi|254780279|r 79 SSPALTLQSLNISA--QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSL 130 (280)
Q Consensus 79 T~P~~~~~~~~~a~--~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~Si 130 (280)
..|....+.++... -.++.+|+=--|.+-++++. .+.+..+|+++ ||+..
T Consensus 74 vKP~~~~~vl~~i~~~~~~~~iISi~AGi~i~~l~~--~l~~~~~v~R~MPN~~~ 126 (245)
T PRK07634 74 MPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE--RLPKGTPVAWIMPNTAA 126 (245)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH--HCCCCCEEEEECCCHHH
T ss_conf 891749999999877606988999817998999998--74899728994585748
No 36
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.24 E-value=1.6e-05 Score=58.03 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=77.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 737999899877999999998389-9789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
.|||+++|+|+||+++++.+.+.. .-+=+.+++|+..+. ..+. ...++.++.+..++.+++|+||=...|..
T Consensus 2 m~kI~~IG~G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~--~~l~-----~~~~v~~~~~~~~~~~~~diIiLaVKP~~ 74 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKR--AALA-----EEYGVRAATDNQEAAQEADVVVLAVKPQV 74 (267)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHH--HHHH-----HHHCCEEECCHHHHHHCCCEEEEEECHHH
T ss_conf 9879998668999999999997798945289977999999--9999-----97396785786988721999999728789
Q ss_pred HHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHHHHH
Q ss_conf 47888764323-7215765022231358999874035552100-00115689
Q gi|254780279|r 84 TLQSLNISAQH-NIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSLGIN 133 (280)
Q Consensus 84 ~~~~~~~a~~~-g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~SiGv~ 133 (280)
..+.++....+ ++.+|+=..|.+-++++.+ +....+|+++ ||+..-+.
T Consensus 75 ~~~vl~~l~~~~~~~iISv~AGi~i~~l~~~--l~~~~~ivR~MPN~~~~v~ 124 (267)
T PRK11880 75 MEDVLSELKGSLDKLVVSIAAGITLARLERA--LGADLPVVRAMPNTPALVG 124 (267)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCHHHHHHH--HCCCCHHHHCCCCHHHHHC
T ss_conf 9999999876508789991699999999988--6368703420874899970
No 37
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=4.5e-06 Score=61.73 Aligned_cols=194 Identities=17% Similarity=0.244 Sum_probs=107.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHC----CC--HHHHCC----------CCCCCCCCCCCHH-
Q ss_conf 737999899877999999998389-97899999648980204----55--366608----------7546754556857-
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIG----QD--VGNFVG----------ISPMGIKFSDNLA- 66 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g----~d--~~~~~~----------~~~~~v~i~~dl~- 66 (280)
+|||+|.|+||+||.+++++.+.+ ++|++++-+..+..+.. .| .|.|.+ ....++++....+
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~Llk~Ds~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p 80 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDP 80 (335)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCH
T ss_conf 90899945757889999999717897599999368997899899864255788777322478748989952688732896
Q ss_pred HHHCC----CCEEEEEECCCHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHH-----HHHHCCCCCEECCCHHHHHHHH
Q ss_conf 85213----550476310102478887643237--215765022231358999-----8740355521000011568999
Q gi|254780279|r 67 MAIQS----VDGIIDFSSPALTLQSLNISAQHN--IVHIIGTTGFSVKENEVI-----SSFARNAPIVKSSNMSLGINFL 135 (280)
Q Consensus 67 ~~~~~----~DViIDFT~P~~~~~~~~~a~~~g--~~vViGTTG~~~e~~~~l-----~~~s~~~~il~apN~SiGv~ll 135 (280)
+.++- +|+|||+|.--...+..+.-++.+ |.++++--+ .++...+ ...-+ ..=-+-+|-|-.-|-|
T Consensus 81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~--~~~~~~vv~gvn~~~~~-~~~~iVsnaSCTTNcL 157 (335)
T COG0057 81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG--KDDVATVVYGVNHNYYD-AGHTIVSNASCTTNCL 157 (335)
T ss_pred HHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCC--CCCCCEEEEECCCCCCC-CCCCEEEECCCHHHHH
T ss_conf 87981212863999899876663347999874599789985789--88861799852513357-8884898745113006
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH----HHCCCCCCC------------------HHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999999986115666008999986----416789986------------------789999999985328876422111
Q gi|254780279|r 136 GFLVETAAEYLLPAKDWDFEILEMH----HRRKLDSPS------------------GTALLLGEAIANGRKVNLTDHMVL 193 (280)
Q Consensus 136 ~~l~~~~a~~l~~~~~~dieI~E~H----H~~K~DaPS------------------GTA~~la~~i~~~~~~~~~~~~~~ 193 (280)
-.+++.+-..|..-+. .++=.| -++=+|.|+ |-|..++..+-+
T Consensus 158 ap~~kvl~d~fGI~~g---~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~VlP~------------ 222 (335)
T COG0057 158 APVAKVLNDAFGIEKG---LMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPE------------ 222 (335)
T ss_pred HHHHHHHHHHCCEEEE---EEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCC------------
T ss_conf 7879999886094599---9999970159874444765220100123477775787423317664704------------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCC-CEEEEEEE
Q ss_conf 235767654334565013752882-05799998
Q gi|254780279|r 194 NRHIQQCARTEGSIGIASLRAGSI-VGEHSVVI 225 (280)
Q Consensus 194 ~~~~~~~~~~~~~I~i~s~R~g~~-~g~H~V~f 225 (280)
-++.+.=.++|.|-. +.-|.+.+
T Consensus 223 ---------L~GKl~g~A~RVPt~~vs~~dl~v 246 (335)
T COG0057 223 ---------LKGKLTGMAIRVPTPNVSVVDLTV 246 (335)
T ss_pred ---------CCCCEEEEEEECCCCCCEEEEEEE
T ss_conf ---------578455689990588727999999
No 38
>PRK07680 late competence protein ComER; Validated
Probab=98.20 E-value=1.5e-05 Score=58.17 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=75.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 3799989987799999999838997--89999964898020455366608754675455685785213550476310102
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
|||+++|+|+||+++++.+.+...+ +-+.+++|+..+.. .......++.++.+..++.+++|+||=..-|..
T Consensus 1 MkI~fIG~GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~------~l~~~~~~i~~~~~~~~~~~~~dvIiLaVKPq~ 74 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESRAVKPSCLTITNRTPAKAY------HIKEKYPSIHVAKTIEEVIEQSELIFICVKPLD 74 (273)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH------HHHHHCCCEEEECCHHHHHHCCCEEEEECCHHH
T ss_conf 98999876999999999999779989456999889989999------999876990886888999840998999648888
Q ss_pred HHHHHHHHH---HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHH
Q ss_conf 478887643---237215765022231358999874035552100-00115
Q gi|254780279|r 84 TLQSLNISA---QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSL 130 (280)
Q Consensus 84 ~~~~~~~a~---~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~Si 130 (280)
..+.++... ..++.+|+=-.|.+-++++.+-. ..++++ ||+..
T Consensus 75 ~~~vl~~i~~~~~~~~~iISi~AGisi~~l~~~~~----~~vvR~MPN~~~ 121 (273)
T PRK07680 75 IYPLLKKLAPHFSDEKCLVSITSPISPEQLETLVP----CQVARIIPSITN 121 (273)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCC----CCCEEEECCCCH
T ss_conf 99999998863478848999558888999997479----981588678860
No 39
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=98.20 E-value=1.9e-05 Score=57.38 Aligned_cols=99 Identities=16% Similarity=0.290 Sum_probs=67.5
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCC------CCC--CCCCCCCCHHHHHCCCCE
Q ss_conf 8737999899-8779999999983899789999964898020455366608------754--675455685785213550
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVG------ISP--MGIKFSDNLAMAIQSVDG 74 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~------~~~--~~v~i~~dl~~~~~~~DV 74 (280)
++|||||+|+ |-.|+++++.+..+|.+++++...++. ..|+.+++... ... .+..+.+--+..++.+|+
T Consensus 2 ~kikvaIvGatGy~G~ELirlL~~HP~~ei~~l~aS~~--~aGk~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~Dv 79 (350)
T PRK08664 2 DKLKVGVLGATGLVGQRFVQLLANHPWFEVTALAASER--SAGKTYGEAVRWQLDGPIPEEVADLEVVSTDPVDVDDVDI 79 (350)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCC--CCCCCHHHHHCCCCCCCCCCCCCCEEEEECCHHHHCCCCE
T ss_conf 97779998984299999999997099966899996553--3788415520322346676444650798688457438999
Q ss_pred EEEEECCC-HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 47631010-24788876432372157650222
Q gi|254780279|r 75 IIDFSSPA-LTLQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 75 iIDFT~P~-~~~~~~~~a~~~g~~vViGTTG~ 105 (280)
+.-+ .|. .+.++.+...+.|+.+|--+.-|
T Consensus 80 vF~A-lPhg~s~~~~~~l~~~g~~VIDlSadf 110 (350)
T PRK08664 80 VFSA-LPSDVAAEVEEEFAKAGKPVFSNASAH 110 (350)
T ss_pred EEEC-CCCHHHHHHHHHHHHCCCEEEECCHHH
T ss_conf 9998-982699999999987798899786220
No 40
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.18 E-value=8e-06 Score=60.02 Aligned_cols=125 Identities=16% Similarity=0.227 Sum_probs=81.8
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 9988737999899-877999999998389978999996489802045536660875467545568578521355047631
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT 79 (280)
|+++++||||+|| |-.|+.+++.+.+++++.+....--......|+.+. .....+.+.+--...+.++|+++=.+
T Consensus 1 m~~k~~nVaIvGATG~VG~~li~lL~~h~~f~v~~v~~~aS~~saGk~v~----~~~~~~~v~~~~~~~~~~~Divf~a~ 76 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ----FKGREIIIQEAKINSFEGVDIAFFSA 76 (347)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEE----ECCCEEEEEECCHHHHHCCCEEEECC
T ss_conf 99888779999880399999999997278987510799865877997626----89927899857844651697899768
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHH----------HHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 010247888764323721576502223135----------89998740355521000011568
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKE----------NEVISSFARNAPIVKSSNMSLGI 132 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~----------~~~l~~~s~~~~il~apN~SiGv 132 (280)
..+.+.++.+.+.+.|..+|--++-|--+. -+.|+ +...++-.||-|--.
T Consensus 77 ~~~~s~~~~~~~~~~G~~VID~Ssa~R~~~~vPlvvPEvN~~~l~---~~~~iIanPnC~tt~ 136 (347)
T PRK06728 77 GGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLK---EHKGIIAVPNCSALQ 136 (347)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCEECCCCCHHHHH---CCCCEEECCCHHHHH
T ss_conf 578899999999858969998975656899974588752966762---327837789808889
No 41
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=98.18 E-value=1.1e-05 Score=59.03 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=71.2
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 7999899-8779999999983899789999964898020455366608754--675455685785213550476310102
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
||||+|+ |..|+.+++.+.+++.++++.++.++. ..|+.+........ ....+.+.-.+.+.++|+++.++....
T Consensus 1 kvaIiGatGyvG~eLirlL~~hp~~~i~~l~~s~~--saG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~ 78 (121)
T pfam01118 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSR--SAGKKVAFAGPWLTGGVDLLLEDVDPEDLKDVDIVFFALPAGV 78 (121)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECC--CCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCEEEECCCHHH
T ss_conf 99998936199999999997188755137885056--5896014416542466664477589778538989998387689
Q ss_pred HHHHHHHHHHCCCEEEEEECCC
Q ss_conf 4788876432372157650222
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG~ 105 (280)
+.++++.+.+.|+.+|-=+.-|
T Consensus 79 s~~~~~~~~~~g~~VIDlS~df 100 (121)
T pfam01118 79 SKELAPKLLEAGAVVIDLSSAF 100 (121)
T ss_pred HHHHHHHHHHCCCEEEECCHHH
T ss_conf 9999999871598998785675
No 42
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.17 E-value=2.6e-05 Score=56.50 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=100.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEE----------CCCCHHHCCCHHHHCCCC-CCCCCCCCCHHHHHCCCC
Q ss_conf 737999899877999999998389978999996----------489802045536660875-467545568578521355
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIV----------RSGSPLIGQDVGNFVGIS-PMGIKFSDNLAMAIQSVD 73 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~----------~~~~~~~g~d~~~~~~~~-~~~v~i~~dl~~~~~~~D 73 (280)
++||+|+|+|-.|.+++..+.++..-...++.+ |.+.++. .++. +.++..+.|+.++++.+|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yL-------p~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYL-------PGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 96189981783799999999966984699962899999997347670105-------99628863222468999972299
Q ss_pred EEEEEECCCHH-HHHHHH---HHHCCCEEEEEECCCCHHHHHHHHHHHC------CCCCEECCCHHHHHHH---------
Q ss_conf 04763101024-788876---4323721576502223135899987403------5552100001156899---------
Q gi|254780279|r 74 GIIDFSSPALT-LQSLNI---SAQHNIVHIIGTTGFSVKENEVISSFAR------NAPIVKSSNMSLGINF--------- 134 (280)
Q Consensus 74 ViIDFT~P~~~-~~~~~~---a~~~g~~vViGTTG~~~e~~~~l~~~s~------~~~il~apN~SiGv~l--------- 134 (280)
+|+ |..|... .+.++. .+..+.++|++|-|+.++..+.+.++.+ .+.+|-.|||+-=|..
T Consensus 74 ~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~va 152 (329)
T COG0240 74 IIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVA 152 (329)
T ss_pred EEE-EECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCEEEEE
T ss_conf 999-9787578999999876433678749997446558876519999999739981899978607999866898179995
Q ss_pred --HHHHHHHHHHHH-----CCCCCCHHHHHHHHHHCCCCCCCHH---HHHHHHHHHHHCCC
Q ss_conf --999999999861-----1566600899998641678998678---99999999853288
Q gi|254780279|r 135 --LGFLVETAAEYL-----LPAKDWDFEILEMHHRRKLDSPSGT---ALLLGEAIANGRKV 185 (280)
Q Consensus 135 --l~~l~~~~a~~l-----~~~~~~dieI~E~HH~~K~DaPSGT---A~~la~~i~~~~~~ 185 (280)
-.+++++.+..| ..+.+.|+.=+|. .|. -+.+|--+.++.+.
T Consensus 153 s~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gvei---------gGAlKNViAIA~Gi~dGlg~ 204 (329)
T COG0240 153 SNDQEAAEKVQALFSSPYFRVYTSTDVIGVEI---------GGALKNVIAIAAGIADGLGL 204 (329)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH---------HHHHHHHHHHHHHHHHHHHC
T ss_conf 28999999999984799679970475135589---------89999999999899988645
No 43
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.16 E-value=4.7e-05 Score=54.76 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=78.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC
Q ss_conf 73799989987799999999838997--8999996489802045536660875467545568578521355047631010
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~ 82 (280)
++||+++|+|+||++++.-+.+...+ +-+.+++|...+.. .+.. ..++.++++..++.+.+|||+-.-.|.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~-----~~g~~~~~~~~~~~~~advv~LavKPq 73 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAA-----EYGVVTTTDNQEAVEEADVVFLAVKPQ 73 (266)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH--HHHH-----HCCCCCCCCHHHHHHHCCEEEEEECHH
T ss_conf 965899846889999999999668998023898379999999--9999-----849855686798874089899984827
Q ss_pred HHHHHHHHHH--HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHH
Q ss_conf 2478887643--237215765022231358999874035552100-00115
Q gi|254780279|r 83 LTLQSLNISA--QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSL 130 (280)
Q Consensus 83 ~~~~~~~~a~--~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~Si 130 (280)
...+.+..+. ..++.+|+=.-|.+-++++ ++....+++++ ||..-
T Consensus 74 ~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~---~~l~~~~vvR~MPNt~a 121 (266)
T COG0345 74 DLEEVLSKLKPLTKDKLVISIAAGVSIETLE---RLLGGLRVVRVMPNTPA 121 (266)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCHHHHH---HHCCCCCEEEECCCHHH
T ss_conf 6899999732356888799970799799999---87489966996788588
No 44
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.15 E-value=2.6e-05 Score=56.54 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=98.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-----CCCHHHHCC-C-CCCCCCCCCCHHHHHCCCCEE
Q ss_conf 887379998998779999999983899789999964898020-----455366608-7-546754556857852135504
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI-----GQDVGNFVG-I-SPMGIKFSDNLAMAIQSVDGI 75 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~-----g~d~~~~~~-~-~~~~v~i~~dl~~~~~~~DVi 75 (280)
+.+=||+|+|+|.||.+++..+.++. -.+.+ .|++.... .++...+.+ + -+..+.+++|++++++.+|+|
T Consensus 4 ~k~~KI~ViGaGawGTALA~~la~n~-~~v~w--~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~a~~~adii 80 (340)
T PRK12439 4 KREPKVVVLGGGSWGTTVASICARRG-PTLQW--VRSEETAKDINDNHRNSRYLGNDVVLSDTLRATTDFTEAANCADVV 80 (340)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEE--ECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEE
T ss_conf 78992899896999999999999589-98999--6899999999982888768998755898728978999998269989
Q ss_pred EEEECCC-HHHHHHHH---HHHCCCEEEEEECCCCHHHH----HHHHHHHC--CCCCEECCCHHHHHHH-----------
Q ss_conf 7631010-24788876---43237215765022231358----99987403--5552100001156899-----------
Q gi|254780279|r 76 IDFSSPA-LTLQSLNI---SAQHNIVHIIGTTGFSVKEN----EVISSFAR--NAPIVKSSNMSLGINF----------- 134 (280)
Q Consensus 76 IDFT~P~-~~~~~~~~---a~~~g~~vViGTTG~~~e~~----~~l~~~s~--~~~il~apN~SiGv~l----------- 134 (280)
| |..|. .+.+.++. .++.+.++|++|=|+..... +.+++.-. ...+|-.|||..-+..
T Consensus 81 i-~avPS~~~r~~~~~l~~~l~~~~~iv~~sKGie~~t~~~~seii~e~l~~~~~~vLSGPsfA~Eva~~~pta~viAs~ 159 (340)
T PRK12439 81 V-MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMP 159 (340)
T ss_pred E-EECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEECC
T ss_conf 9-936808999999999865578875997327502799987999999875799706863874499997089851366468
Q ss_pred HHHHHHHHHHHHC-----CCCCCHHHHHHHHHHCCCCCCCHHHH---HHHHHHHHHCCC
Q ss_conf 9999999998611-----56660089999864167899867899---999999853288
Q gi|254780279|r 135 LGFLVETAAEYLL-----PAKDWDFEILEMHHRRKLDSPSGTAL---LLGEAIANGRKV 185 (280)
Q Consensus 135 l~~l~~~~a~~l~-----~~~~~dieI~E~HH~~K~DaPSGTA~---~la~~i~~~~~~ 185 (280)
-..+++..++.|. ...+.|+-=+|. .|.-+ .+|--+.++.+.
T Consensus 160 ~~~~a~~l~~lf~~~~frvy~s~DviGvEl---------gGAlKNViAIaaGi~dGl~~ 209 (340)
T PRK12439 160 DQHLATRLSALFRTRRFRVYTTDDVVGVEM---------AGALKNVFAIAVGMGYSLGI 209 (340)
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCHHHHH---------HHHHHHHHHHHHHHHHHCCC
T ss_conf 889999999985868779997477044368---------79999999999999814589
No 45
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.14 E-value=2.6e-05 Score=56.49 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=73.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC-EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 3799989987799999999838997-899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSI-TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~-eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
|||+++|+|+||+++++.+.+.... +-+.+.+|+... ..........+.++.|-.++.+++|+||=..-|...
T Consensus 1 MkIgfIG~GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~------~~~l~~~~~~v~~~~~n~~~~~~~dvi~LaVKP~~~ 74 (255)
T PRK06476 1 MRIGFIGTGAITEAMVTGLLSSPADVSEIIVSPRNAQI------AARLAARFAKVRIAKDNQAVVDRSDVVFLAVRPQIA 74 (255)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHH------HHHHHHHCCCEEEECCHHHHHHHCCEEEEEECHHHH
T ss_conf 98999864699999999999788992508898989899------999998769559857889998518878886178889
Q ss_pred HHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHHHH
Q ss_conf 78887643-237215765022231358999874035552100-0011568
Q gi|254780279|r 85 LQSLNISA-QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSLGI 132 (280)
Q Consensus 85 ~~~~~~a~-~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~SiGv 132 (280)
.+.++... ..+..+|+=--|.+-++++.+ +..+.+|+.+ ||...-+
T Consensus 75 ~~vl~~l~~~~~~~vISi~AGi~i~~l~~~--l~~~~~vvR~MPN~~~~~ 122 (255)
T PRK06476 75 EEVLRALRFRPGQTVISVIAATTRAALLKW--IGADVKLVRAIPLPFVAE 122 (255)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHHHH--HCCCCCEEEECCCCHHHH
T ss_conf 988776205789789997378779999976--189986488558708884
No 46
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.14 E-value=3.2e-05 Score=55.90 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=95.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-------CEEEEEEECCCCH---H----H---CCCHHHHCCCC-CCCCCCCCCHHHH
Q ss_conf 79998998779999999983899-------7899999648980---2----0---45536660875-4675455685785
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPS-------ITLHSIIVRSGSP---L----I---GQDVGNFVGIS-PMGIKFSDNLAMA 68 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~-------~eLv~~i~~~~~~---~----~---g~d~~~~~~~~-~~~v~i~~dl~~~ 68 (280)
||+|+|+|.+|.+++..+.++.. .++ -.+.|.+.. . + ..+.-.+.+.+ +..+..+.|++++
T Consensus 1 KI~ViGaGawGTALA~~La~ng~~~~~~~~~~V-~lw~r~~~~~~~~~~~~in~~~~N~~yLp~i~Lp~~i~~t~dl~~~ 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESV-RMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEE-EEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHH
T ss_conf 989987799999999999974886545578637-9997232210046899997449686779878489860896689999
Q ss_pred HCCCCEEEEEECCCHH-HHHHH---HHHHCCCEEEEEECCCCH--HHH----HHHHHHH-CCCCCEECCCHHHHHHH---
Q ss_conf 2135504763101024-78887---643237215765022231--358----9998740-35552100001156899---
Q gi|254780279|r 69 IQSVDGIIDFSSPALT-LQSLN---ISAQHNIVHIIGTTGFSV--KEN----EVISSFA-RNAPIVKSSNMSLGINF--- 134 (280)
Q Consensus 69 ~~~~DViIDFT~P~~~-~~~~~---~a~~~g~~vViGTTG~~~--e~~----~~l~~~s-~~~~il~apN~SiGv~l--- 134 (280)
++++|+|| +..|... .+.++ ..++.+.++|++|=|+.. +.. +.+++.- ..+.+|-.|||+.-|..
T Consensus 80 ~~~ad~ii-~avPs~~~r~~~~~l~~~l~~~~~ii~~sKGle~~~~~~~~~seii~e~~~~~~~vLsGPs~A~EVa~~~p 158 (342)
T TIGR03376 80 AKGADILV-FVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKF 158 (342)
T ss_pred HHCCCEEE-EECCHHHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHCCCC
T ss_conf 83698899-96686999999999985458887389842344436998311999999985998699727763899863888
Q ss_pred ------------HHHHHHHHHHHHC-----CCCCCHHHHHHHHHHCCCCCCCHHHH---HHHHHHHHHCCC
Q ss_conf ------------9999999998611-----56660089999864167899867899---999999853288
Q gi|254780279|r 135 ------------LGFLVETAAEYLL-----PAKDWDFEILEMHHRRKLDSPSGTAL---LLGEAIANGRKV 185 (280)
Q Consensus 135 ------------l~~l~~~~a~~l~-----~~~~~dieI~E~HH~~K~DaPSGTA~---~la~~i~~~~~~ 185 (280)
...+.+...+.|. ...+.|+-=+|. .|.-+ .+|--+.++++.
T Consensus 159 t~~~vA~~~~~~~~~~a~~i~~lf~~~~frvy~s~DviGvEl---------~GAlKNViAIa~Gi~~Gl~~ 220 (342)
T TIGR03376 159 SETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEI---------AGALKNVVAIAAGFVDGLGW 220 (342)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHH---------HHHHHHHHHHHHHHHHHCCC
T ss_conf 643898437412499999999997899769997476135578---------89999999999878724479
No 47
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.07 E-value=5.6e-05 Score=54.21 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=73.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCE--EEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 37999899877999999998389978--9999964898020455366608754675455685785213550476310102
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSIT--LHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~e--Lv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
.||+++|+|+||+++++.+.+...+. -+.+.+++..... ..+. ...+.....+.+++...+|+||=...|..
T Consensus 2 ~kI~fIG~GnMg~Aii~Gll~~~~~~~~~i~v~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~dvIilaVKP~~ 75 (275)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVITPEEIILYSRSENEHF----KQLY--DKYPTVALASNEELFTKCDHSFICVPPLA 75 (275)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH----HHHH--HHCCCEEECCHHHHHHHCCEEEEEECHHH
T ss_conf 88999867899999999999789999636999789938999----9999--87495363777999854998999978587
Q ss_pred HHHHHHHHH---HCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC-CCHHHHH
Q ss_conf 478887643---237215765022231358999874035552100-0011568
Q gi|254780279|r 84 TLQSLNISA---QHNIVHIIGTTGFSVKENEVISSFARNAPIVKS-SNMSLGI 132 (280)
Q Consensus 84 ~~~~~~~a~---~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a-pN~SiGv 132 (280)
..+.++... ..+..+|+=..|++-++++.+ .. .+|+++ ||+..-+
T Consensus 76 ~~~vl~~i~~~~~~~~~iISi~AGi~i~~l~~~---~~-~~vvRvMPNtpa~v 124 (275)
T PRK06928 76 VLPLMKDCAPVLTPDRHVVSIAAGVSLDDLLEI---TP-GQVSRLIPSLTSAV 124 (275)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH---CC-CCEEEEECCCCHHH
T ss_conf 999999976532799689995699989999975---79-98379713732776
No 48
>pfam00044 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.05 E-value=1.7e-05 Score=57.71 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=31.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 3799989987799999999838997899999648
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRS 39 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~ 39 (280)
|||||.|+||+||.+.+++..+++++++++-+..
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~i~iv~INd~~ 34 (150)
T pfam00044 1 IKVGINGFGRIGRLVLRAALAQDDLEVVAINDLT 34 (150)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9898977868999999999768996799985479
No 49
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.05 E-value=1.6e-05 Score=57.90 Aligned_cols=34 Identities=21% Similarity=0.499 Sum_probs=31.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 3799989987799999999838997899999648
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRS 39 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~ 39 (280)
|||||.|+||+||.+++++..+++++++++-+..
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~~vv~INd~~ 34 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLT 34 (149)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9898977878999999999768995899845777
No 50
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=98.00 E-value=0.00013 Score=51.70 Aligned_cols=117 Identities=14% Similarity=0.247 Sum_probs=89.6
Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEE
Q ss_conf 88737999899-8779999999983899789999964898020455366608754675455685785213--55047631
Q gi|254780279|r 3 QSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFS 79 (280)
Q Consensus 3 ~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT 79 (280)
++.-||.|-|. ||-|+...+...+. +..+|+++..... |+ .-.++|+++...++.+. +|+-+=|-
T Consensus 6 ~~~trv~vqGiTG~~g~~h~~~m~~y-GT~iVaGVtPgkg---G~--------~~~gvPVf~tV~eAv~~~~~d~svIfV 73 (289)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKG---GT--------THLGLPVFNTVKEAVEATGATASVIYV 73 (289)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCC---CE--------EEECCCCCCCHHHHHHHCCCCEEEEEE
T ss_conf 59983999878883777999999986-8956999779978---51--------765833306599998612888699970
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHHHCCC-CCEECCCHHHHH
Q ss_conf 010247888764323721576502-22313589998740355-521000011568
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTT-GFSVKENEVISSFARNA-PIVKSSNMSLGI 132 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~l~~~s~~~-~il~apN~SiGv 132 (280)
.|..+.+-+..|.+.++++|++.| |....+..++.+++++. ..++.||- .|+
T Consensus 74 Pp~~a~dAi~EAi~agI~~iV~ITEgiP~~D~~~i~~~a~~~g~riIGPNc-~Gi 127 (289)
T PRK05678 74 PPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKRYLKGKKTRLIGPNC-PGI 127 (289)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCC-CEE
T ss_conf 789999999999867998899943899788899999987307988988999-701
No 51
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=97.99 E-value=4.1e-05 Score=55.12 Aligned_cols=191 Identities=12% Similarity=0.119 Sum_probs=119.8
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CC-CCCC-CCH---HHHH-CCCCEEE
Q ss_conf 37999899-8779999999983899789999964898020455366608754--67-5455-685---7852-1355047
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MG-IKFS-DNL---AMAI-QSVDGII 76 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~-v~i~-~dl---~~~~-~~~DViI 76 (280)
|||+|+|| |=.|.++++.+.++|.+|++..+.++.. ..|+.+.+....-. .. ..+. .+. ++.. .++|||.
T Consensus 1 ~~V~IvGAsGYtG~EL~RLL~~HP~~e~~~~~ss~~~-~aG~~~~~~~P~L~g~~~~~~~~~~~~~~~~~~~L~~~DvVF 79 (361)
T TIGR01850 1 IKVGIVGASGYTGGELLRLLANHPEVEITYLVSSRES-LAGKPLSEVHPHLRGLVDYLNLEPLDDAKLEEIELEDADVVF 79 (361)
T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEEEEH-HCCCCHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEEE
T ss_conf 9689993344468999999841995378888876201-138525773661110100233366676678886213767899
Q ss_pred EEECCCHHHHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHCCCCCEECC-----CHHHHHHHHH--HHHHHHHHHHCC
Q ss_conf 63101024788876432372157650222313-589998740355521000-----0115689999--999999986115
Q gi|254780279|r 77 DFSSPALTLQSLNISAQHNIVHIIGTTGFSVK-ENEVISSFARNAPIVKSS-----NMSLGINFLG--FLVETAAEYLLP 148 (280)
Q Consensus 77 DFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e-~~~~l~~~s~~~~il~ap-----N~SiGv~ll~--~l~~~~a~~l~~ 148 (280)
=.+.+..+.+++...++.|+.||= +|.+ +++..+.+.+--.. +++ +.--|..=+. +---.-|++..+
T Consensus 80 lAlPhgvs~~~~p~~l~~g~~ViD----LSADFRl~d~~~Ye~wYG~-h~~~~ll~~avYGLpEl~~~re~i~~A~liAn 154 (361)
T TIGR01850 80 LALPHGVSMELAPELLEAGVKVID----LSADFRLKDPEVYEKWYGF-HAAPELLQEAVYGLPELHGAREEIKGARLIAN 154 (361)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEE----CCCCCCCCCHHHHHHHCCC-CCCHHHHHHCCCCCCCCCHHHHHHHCCCEEEC
T ss_conf 868725569999999847986998----8834336997999996677-88966663115567670105889842957644
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEECCCC
Q ss_conf 666008999986416789986789999999985328876422111235767654-334565013752882
Q gi|254780279|r 149 AKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCAR-TEGSIGIASLRAGSI 217 (280)
Q Consensus 149 ~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~i~s~R~g~~ 217 (280)
++ |- |-+|=|.|+=.+.+..-.......+....|..|+. ....-..++.+.+++
T Consensus 155 -PG--CY------------pTA~~LaL~PL~~~~l~~~~~~~i~dakSGvSGAGr~as~~~~~~E~~en~ 209 (361)
T TIGR01850 155 -PG--CY------------PTATLLALAPLLKEGLIDPTSEIIVDAKSGVSGAGRKASEKSHFPEVNENL 209 (361)
T ss_pred -CC--CH------------HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCC
T ss_conf -88--61------------789999989999831567677658988744556677776335734432770
No 52
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.98 E-value=3.4e-05 Score=55.74 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=99.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEC-CCCHHH----------CCCHHHH--------CCCCCCCCCCCCCH
Q ss_conf 7379998998779999999983899789999964-898020----------4553666--------08754675455685
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVR-SGSPLI----------GQDVGNF--------VGISPMGIKFSDNL 65 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~-~~~~~~----------g~d~~~~--------~~~~~~~v~i~~dl 65 (280)
+|||||.|+||.||.+.+.....++++++++-|. .+.... |+-.++. .+-.+..+.-..|+
T Consensus 2 ~ikigINGFGRIGR~v~R~~~~~~~i~vvaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~dp 81 (337)
T PTZ00023 2 VVKIGINGFGRIGRLVHRASLARENVEVVAINDPFMTPDYIKYLLKYDSVHGSLPCEVSVTSDHLMIGSKKVHLFFEKDP 81 (337)
T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEECCCCH
T ss_conf 67999956877899999998418994899978999999999998653678998999789838959999978875056996
Q ss_pred HHHH---CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH------HHHHCCCCCEECCCHHHHHHHHH
Q ss_conf 7852---13550476310102478887643237215765022231358999------87403555210000115689999
Q gi|254780279|r 66 AMAI---QSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVI------SSFARNAPIVKSSNMSLGINFLG 136 (280)
Q Consensus 66 ~~~~---~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l------~~~s~~~~il~apN~SiGv~ll~ 136 (280)
+++- ..+|+|||+|-.-...+-++.-++.|..-|+=| .-..+....+ +++...-.|+ +|=|-..|-+-
T Consensus 82 ~~ipW~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiS-AP~~d~~~t~V~GVN~~~~~~~~~II--SnASCTTNclA 158 (337)
T PTZ00023 82 SQIPWGKNDVDVVAECTGVFTSTEKAKLHLKGGAKLVIIS-APPSDSTPIYVFGVNHTQYDKSQRIV--SNASCTTNCLA 158 (337)
T ss_pred HHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEC-CCCCCCCCEEEEECCHHHCCCCCCEE--ECCCCCCCCHH
T ss_conf 6699220398789962654468899999987699779976-89988886799835634348767289--65631003003
Q ss_pred HHHHHHHHHHCCCCCC---------HHHHHHHHHHCCCC-------------CCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999861156660---------08999986416789-------------9867899999999853288764221112
Q gi|254780279|r 137 FLVETAAEYLLPAKDW---------DFEILEMHHRRKLD-------------SPSGTALLLGEAIANGRKVNLTDHMVLN 194 (280)
Q Consensus 137 ~l~~~~a~~l~~~~~~---------dieI~E~HH~~K~D-------------aPSGTA~~la~~i~~~~~~~~~~~~~~~ 194 (280)
-+++.+-..|..-..+ |=.+++.-|+..+| +..|.|..+++.+-+-
T Consensus 159 Pl~kvL~~~fgI~~g~mTTIHsyT~~Q~l~D~~h~~~kD~Rr~Raa~~nIIPtsTgAakAi~~VlPeL------------ 226 (337)
T PTZ00023 159 PLAKVINDNFGIVEGLMTTVHAVTANQLTVDGASRGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPEL------------ 226 (337)
T ss_pred HHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHH------------
T ss_conf 07987865348678789986346688730457786777545664254178866563889998540530------------
Q ss_pred CCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 35767654334565013752882
Q gi|254780279|r 195 RHIQQCARTEGSIGIASLRAGSI 217 (280)
Q Consensus 195 ~~~~~~~~~~~~I~i~s~R~g~~ 217 (280)
++.+.=.|+|.|-.
T Consensus 227 ---------~GKl~g~A~RVPt~ 240 (337)
T PTZ00023 227 ---------NGKLTGMAFRVPVS 240 (337)
T ss_pred ---------CCCCCEEEEECCCC
T ss_conf ---------79730368943787
No 53
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.96 E-value=3.2e-05 Score=55.92 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=77.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-HHH----------CCCHHHH------CCCCCCCCCC--CCCH
Q ss_conf 7379998998779999999983899789999964898-020----------4553666------0875467545--5685
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-PLI----------GQDVGNF------VGISPMGIKF--SDNL 65 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-~~~----------g~d~~~~------~~~~~~~v~i--~~dl 65 (280)
+|||||.|+||.||.+.+++...++++++++-|.... ... |+-.... +-+....+++ ..++
T Consensus 2 tirIgINGFGRIGR~v~R~~~~~~~ievVaIND~~~d~~~~ayLLkyDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p 81 (333)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPEVEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDDIVINGKRIRTTQNKAI 81 (333)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCEEEEEECCCCC
T ss_conf 67999957887899999998528990899991799998999998601267898998689809969999999877414880
Q ss_pred HHH-HCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHH----H--HHHHCC-CCCEECCCHHHHHHHHHH
Q ss_conf 785-21355047631010247888764323721576502223135899----9--874035-552100001156899999
Q gi|254780279|r 66 AMA-IQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEV----I--SSFARN-APIVKSSNMSLGINFLGF 137 (280)
Q Consensus 66 ~~~-~~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~----l--~~~s~~-~~il~apN~SiGv~ll~~ 137 (280)
+++ -..+|+|||+|-.-...+-++.-++.|..-|+=|.=..++.... + +++... -.|+ +|=|=..|-+--
T Consensus 82 ~~i~W~~vDiViEcTG~f~t~~~a~~Hl~~GakkViiSaP~k~~~~~tiV~GVN~~~~~~~~~~ii--S~aSCTTNclAP 159 (333)
T PRK08955 82 ADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLYDPAIHPIV--TAASCTTNCLAP 159 (333)
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCHHHCCCCCCCEE--ECCCHHHHHHHH
T ss_conf 127866676899916766888999999875985799657998777404899603221476547578--746414213476
Q ss_pred HHHHHHHHH
Q ss_conf 999999861
Q gi|254780279|r 138 LVETAAEYL 146 (280)
Q Consensus 138 l~~~~a~~l 146 (280)
+++.+.+.|
T Consensus 160 ~~kvl~~~f 168 (333)
T PRK08955 160 VVKVIHEKL 168 (333)
T ss_pred HHHHHHHHC
T ss_conf 999888635
No 54
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.93 E-value=4.7e-05 Score=54.77 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=75.1
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 9988737999899-87799999999838--99789999964898020455366608754675455685785213550476
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIID 77 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViID 77 (280)
|++ +|||||+|+ |-.|+.+++.+.+. |..+|.....+. ..|+.++.. ...+.+.+-.+..+.++|++.
T Consensus 1 M~~-~~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~---saGk~i~~~----~~~l~v~~~~~~~~~~vDlvf- 71 (336)
T PRK05671 1 MSQ-PLDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASME---SAGHSVPFA----GKNLRVREVDSFDFSQVKLAF- 71 (336)
T ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC---CCCCEEEEC----CCEEEEEECCCCCCCCCCEEE-
T ss_conf 998-88799999864999999999863699802699998765---689875468----967899978824424598899-
Q ss_pred EEC-CCHHHHHHHHHHHCCCEEEEEECCCCHHHH---------HHHHHHHCCCCCEECCCHHHH
Q ss_conf 310-102478887643237215765022231358---------999874035552100001156
Q gi|254780279|r 78 FSS-PALTLQSLNISAQHNIVHIIGTTGFSVKEN---------EVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 78 FT~-P~~~~~~~~~a~~~g~~vViGTTG~~~e~~---------~~l~~~s~~~~il~apN~SiG 131 (280)
|+. ++...++.+.+.+.|..+|-=+.-|-.++. +.|+.+ ++..++-.||-|--
T Consensus 72 fa~~~~vs~~~a~~~~~aG~~VID~Ss~fr~~~vPlvvPEvN~~~l~~~-~~~~iVanPnC~t~ 134 (336)
T PRK05671 72 FAAGAAVSRSFAEKALAAGCSVIDLSGALPSAQAPNVVPEANAERLASL-AAPFLVSSPSASAV 134 (336)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCHHHHHHC-CCCCEEECCCCHHH
T ss_conf 8688166799899999769979956201330379777404299999607-56877867860666
No 55
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=97.93 E-value=7.2e-05 Score=53.47 Aligned_cols=213 Identities=17% Similarity=0.182 Sum_probs=121.5
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCC--C-CCCC-------CCCCCHHH--HHCC
Q ss_conf 37999899-877999999998389-97899999648980204553666087--5-4675-------45568578--5213
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGI--S-PMGI-------KFSDNLAM--AIQS 71 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~--~-~~~v-------~i~~dl~~--~~~~ 71 (280)
|||||.|+ |-.||..++.+.++| .|+|+..+.++.+ .|++.++.... . ..+. .+..--+. ..+.
T Consensus 1 ~~VavLGaTG~VGq~f~~lL~~HPr~Fe~~~v~AS~~s--aGk~Yge~~~W~~~~~g~~Pe~~~dl~i~~~~p~ri~~d~ 78 (358)
T TIGR00978 1 VRVAVLGATGLVGQKFVKLLEKHPRYFELAKVVASERS--AGKRYGEVVKWREILSGDIPEEVRDLEIVETEPVRIAEDH 78 (358)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCC--CCCCHHHHHHHCCCCCCCCCHHHCCCEEECCCCCEEEECC
T ss_conf 96899706554689999997526981228898836865--5767445430121236858432347654134743356617
Q ss_pred CCEEEEEE-CCCHHH-HHHHHHHHCCCEEEEEECC-------------CCHHHHHHHHHHHCC---CC-CEECCCHHHHH
Q ss_conf 55047631-010247-8887643237215765022-------------231358999874035---55-21000011568
Q gi|254780279|r 72 VDGIIDFS-SPALTL-QSLNISAQHNIVHIIGTTG-------------FSVKENEVISSFARN---AP-IVKSSNMSLGI 132 (280)
Q Consensus 72 ~DViIDFT-~P~~~~-~~~~~a~~~g~~vViGTTG-------------~~~e~~~~l~~~s~~---~~-il~apN~SiGv 132 (280)
-||-|=|| .|+... +.=+.|++.|+++++=.+- -+.++++.|+..-++ -+ |+-.||=|.-+
T Consensus 79 ~dVD~vfSALp~~~A~~~E~~la~~G~~VfSNAs~~RmdpdVPli~PEVN~~hL~l~~~Q~~RrgW~G~ivtNPNC~t~~ 158 (358)
T TIGR00978 79 KDVDIVFSALPSEVAEEVEPKLAEEGIIVFSNASAHRMDPDVPLIVPEVNSDHLELLKVQKERRGWKGFIVTNPNCTTAG 158 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCEEEECCHHHHHH
T ss_conf 98269981499799999999998569889876847788888677833356147999985400168861799576167887
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHH------HHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 999999999998611566600899998641678998678------9999-999985328876422111235767654---
Q gi|254780279|r 133 NFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGT------ALLL-GEAIANGRKVNLTDHMVLNRHIQQCAR--- 202 (280)
Q Consensus 133 ~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGT------A~~l-a~~i~~~~~~~~~~~~~~~~~~~~~~~--- 202 (280)
- .--++ ++++.+. |.+. |-.=.=|=||- ++.+ ++.|=...+.+ .+...++++...|.-
T Consensus 159 l--Tl~Lk---Pl~d~~~-----~~~V-~v~TmQAvSGAGY~GVp~~~I~dN~iP~I~GEE-~KIe~E~~KilsGkl~~g 226 (358)
T TIGR00978 159 L--TLALK---PLIDAFG-----IKKV-IVTTMQAVSGAGYPGVPSMDILDNVIPHIGGEE-EKIERETLKILSGKLENG 226 (358)
T ss_pred H--HHHHH---HHHHCCC-----CCEE-EEEEECCHHCCCCCCCCHHHHHCCCCCCCCCHH-HHHHHHHHHHHCCCCCCC
T ss_conf 7--61013---4643058-----4569-998720001488888754555336165506335-898762133334400388
Q ss_pred ----CCCCCCCEEEECCCCCEEEEEEEECCCCEE
Q ss_conf ----334565013752882057999981899589
Q gi|254780279|r 203 ----TEGSIGIASLRAGSIVGEHSVVIAGEGESI 232 (280)
Q Consensus 203 ----~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i 232 (280)
..-+|..++.|.|=..||-+++|.--.+.+
T Consensus 227 ~~~PA~~~~~at~~RVPV~~GHt~~v~v~~~~~~ 260 (358)
T TIGR00978 227 KIEPAEFEVSATTTRVPVLDGHTESVHVEFDKKF 260 (358)
T ss_pred EEEEECCEEEEEEEECCCCCCCEEEEEEEECCCC
T ss_conf 4642044068998744411164699999866877
No 56
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=97.90 E-value=0.00024 Score=49.89 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=75.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH----------CCCHHHH--------CCCCCCCCCCCCCHH
Q ss_conf 7379998998779999999983899789999964898020----------4553666--------087546754556857
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI----------GQDVGNF--------VGISPMGIKFSDNLA 66 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~----------g~d~~~~--------~~~~~~~v~i~~dl~ 66 (280)
+|||||.|+||.||.+.+.+..+++++++++=+..+.... |+-.+.. .+-.+..+.-..|++
T Consensus 2 ~irIgINGFGRIGR~v~R~~~~~~~i~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~dp~ 81 (343)
T PRK07729 2 KVRVAINGFGRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVNGKKIRLLNNRDPK 81 (343)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEECCCCCCCHH
T ss_conf 67999978886899999999668998899984899989999975852778988997897199799999750123669967
Q ss_pred HHH---CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH-----HHHH-CCCCCEECCCHHHHHHHHHH
Q ss_conf 852---13550476310102478887643237215765022231358999-----8740-35552100001156899999
Q gi|254780279|r 67 MAI---QSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVI-----SSFA-RNAPIVKSSNMSLGINFLGF 137 (280)
Q Consensus 67 ~~~---~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l-----~~~s-~~~~il~apN~SiGv~ll~~ 137 (280)
++- -.+|+|||+|---...+-+..-++.|..-|+=|---.+++...+ +++. ++-.|+ +|-|-..|-+--
T Consensus 82 ~i~W~~~gvD~ViE~TG~f~~~e~a~~Hl~~GakkViiSAP~k~~d~tiV~GVN~~~~~~~~~~Ii--SnASCTTNclAP 159 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTVI--SNASCTTNCLAP 159 (343)
T ss_pred HCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCHHHCCCCCCCEE--ECCCHHHHHHHH
T ss_conf 788410388499974755678899998885498679988898999745997235554576548389--738479888999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999998611
Q gi|254780279|r 138 LVETAAEYLL 147 (280)
Q Consensus 138 l~~~~a~~l~ 147 (280)
+++.+-+.|.
T Consensus 160 v~kvL~~~fG 169 (343)
T PRK07729 160 VVKVLDEQFG 169 (343)
T ss_pred HHHHHHHHCC
T ss_conf 9999986538
No 57
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.87 E-value=9.8e-05 Score=52.57 Aligned_cols=93 Identities=15% Similarity=0.285 Sum_probs=69.8
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCC-HHHHH-----CCCCE
Q ss_conf 9988737999899877999999998389978999996489802045536660875467545568-57852-----13550
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN-LAMAI-----QSVDG 74 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~d-l~~~~-----~~~DV 74 (280)
|+ .++||+|+|.|+.|..+.--+.+++-+++++.+-++... .|... ....|++++++ ++.++ +++|+
T Consensus 1 ~~-~k~~vAIiGsGnIGtDLm~Ki~Rs~~le~~~~vG~dp~S-~GL~r-----A~~lGv~ts~~GId~ll~~~~~~~idi 73 (298)
T PRK08300 1 MM-SKIKVAIIGSGNIGTDLMIKILRSPHLEPVAMVGIDPES-DGLAR-----ARRLGVATTAEGIDGLLAHPEFDDIDI 73 (298)
T ss_pred CC-CCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEEECCCCC-HHHHH-----HHHCCCCCCCCCHHHHHHCCCCCCCCE
T ss_conf 98-753499988883389999998657761069998059898-49999-----998499663767999961833568788
Q ss_pred EEEEECCCHHHHHHHHHHHCCCEEEE
Q ss_conf 47631010247888764323721576
Q gi|254780279|r 75 IIDFSSPALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 75 iIDFT~P~~~~~~~~~a~~~g~~vVi 100 (280)
|.|.|+..+...|.+...+.|+.+|=
T Consensus 74 VFDATSA~aH~~h~~~l~~~g~~~ID 99 (298)
T PRK08300 74 VFDATSAGAHVENAAKLRELGVRVID 99 (298)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99789806689999999973987996
No 58
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00015 Score=51.36 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=68.0
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCC-CCHHH-HHCCCCEEEEEE
Q ss_conf 737999899-8779999999983899789999964898020455366608754--675455-68578-521355047631
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFS-DNLAM-AIQSVDGIIDFS 79 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~-~dl~~-~~~~~DViIDFT 79 (280)
+|||+|+|+ |-.|-++++.+..++++|+..+..+. ..|+.+.+....-. ...... .|.+. ..+++||++-.+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~---~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlal 78 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRE---RAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLAL 78 (349)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECHH---HCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEC
T ss_conf 815999778877489999998659973799963166---45870687582423534554335774553015688899906
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 01024788876432372157650222
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~ 105 (280)
...++.+.+....+.|..+|=-++-|
T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadf 104 (349)
T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADF 104 (349)
T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 86368898999974799499887320
No 59
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.85 E-value=0.00015 Score=51.35 Aligned_cols=97 Identities=13% Similarity=0.266 Sum_probs=66.8
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCC-C-CCCCCCC-CCHHHHHCCCCEEEEEEC
Q ss_conf 737999899-87799999999838997899999648980204553666087-5-4675455-685785213550476310
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGI-S-PMGIKFS-DNLAMAIQSVDGIIDFSS 80 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~-~-~~~v~i~-~dl~~~~~~~DViIDFT~ 80 (280)
.|||+|+|+ |-.|+++++.+.++|.++|.....++ ..|+.+.+.... . ..+..+. -+.+....++|+++ |+.
T Consensus 1 m~kVaIvGAtG~vG~eli~lL~~hp~~ei~~las~~---saGk~i~~~~p~l~~~~~~~~~~~~~~~~~~~~Divf-~al 76 (345)
T PRK00436 1 MIKVAIVGASGYTGGELLRLLLNHPEVEIVYLTSRS---SAGKPLSDLHPHLRGLVDLVLEPLDPEEIAAGADVVF-LAL 76 (345)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCC---CCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCCEEE-ECC
T ss_conf 919999896618899999999809986799997578---6897377858110377787476499889426999999-889
Q ss_pred CC-HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 10-24788876432372157650222
Q gi|254780279|r 81 PA-LTLQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 81 P~-~~~~~~~~a~~~g~~vViGTTG~ 105 (280)
|. .+.+++..+.+.|+.+|=-++-|
T Consensus 77 p~~~S~~~~~~~~~~g~~VID~Ssdf 102 (345)
T PRK00436 77 PHGVSMELAPQLLEAGVKVIDLSADF 102 (345)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCHHH
T ss_conf 83899999999986698799897012
No 60
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=97.84 E-value=0.00013 Score=51.83 Aligned_cols=89 Identities=11% Similarity=0.123 Sum_probs=73.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEECCC
Q ss_conf 7379998998779999999983899789999964898020455366608754675455685785213--55047631010
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSSPA 82 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~P~ 82 (280)
.-||+|+|+|+.|+++.....+..++.++++++.++.+ .|+ .-.+++++++++++.++ +|+.|=|.++.
T Consensus 3 ~~~v~liG~g~lG~al~~~~~~~~~~~i~~vfdv~p~~-~G~--------~i~gipv~~~l~~~~~~~~idiaii~VP~~ 73 (96)
T pfam02629 3 DTKVAVIGASGLGIQGLYHFIQLLGYGIKMVFGVNPRK-GGT--------EVGGIPVYKSVDELEEDTGVDVAVITVPAP 73 (96)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCC--------EECCEEEECCHHHHHHCCCCCEEEEEECHH
T ss_conf 77499999898278887768877148618998069242-775--------888998431087774155887899994789
Q ss_pred HHHHHHHHHHHCCCEEEEEE
Q ss_conf 24788876432372157650
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGT 102 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGT 102 (280)
.+.+.+..|.+.|++.|+.-
T Consensus 74 ~a~~~~~~~v~~GIk~i~nf 93 (96)
T pfam02629 74 FAQEAIDELVDAGIKGIVNI 93 (96)
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 98999999998699899994
No 61
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=97.84 E-value=8.2e-05 Score=53.09 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=64.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE-ECCCHH
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763-101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF-SSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF-T~P~~~ 84 (280)
+||+++|.|+||+.+++.+.+ .++++. +++|+..+.. .+ ...+....+++.++.+.+|+||=+ +.++.+
T Consensus 2 ~~Ig~IGlG~MG~~ma~~L~~-~g~~v~-v~d~~~~~~~-----~~---~~~g~~~~~s~~e~~~~~dvIi~~l~~~~~v 71 (163)
T pfam03446 2 AKIGFIGLGVMGSPMALNLLK-AGYTVT-VYNRTPEKVE-----EL---VAEGAVAAASPAEAAASADVVITMVPAGAAV 71 (163)
T ss_pred CEEEEEEEHHHHHHHHHHHHH-CCCEEE-EEECCHHHHH-----HH---HHCCCEECCCHHHHHHCCCEEEEECCCHHHH
T ss_conf 889998367989999999997-799699-9979788779-----99---9839955399999986199999925871454
Q ss_pred HHHHHH------HHHCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 788876------432372157650222313589998740
Q gi|254780279|r 85 LQSLNI------SAQHNIVHIIGTTGFSVKENEVISSFA 117 (280)
Q Consensus 85 ~~~~~~------a~~~g~~vViGTTG~~~e~~~~l~~~s 117 (280)
.+.+.. ....|.-+|-+||... +....+.+..
T Consensus 72 ~~V~~~~~gl~~~~~~g~iiid~sT~~p-~~~~~~~~~~ 109 (163)
T pfam03446 72 DAVIFGEDGLLPGLKPGDIIIDGSTISP-DDTRRLAKEL 109 (163)
T ss_pred HEEECCCCCHHHHCCCCCEEEECCCCCH-HHHHHHHHHH
T ss_conf 0220263133231358988986798999-9999999987
No 62
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.83 E-value=0.00013 Score=51.67 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=85.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE-ECCCH
Q ss_conf 73799989987799999999838997899999648980204553666087546754556857852135504763-10102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF-SSPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF-T~P~~ 83 (280)
.|||+++|-|+||+.+++.+.+ .++++. +++|+..+.. .+ ...|..+.+++.++...+|+||-+ +.++.
T Consensus 1 ~MkIgfIGlG~MG~~ma~~L~~-~G~~v~-v~dr~~~~~~-----~l---~~~Ga~~~~s~~e~~~~~dvvi~~l~~~~~ 70 (295)
T PRK11559 1 TMKVGFIGLGIMGKPMSKNLLK-AGYSLV-VYDRNPEAIA-----DV---IAAGAETASTAKAIAEQCDVIITMLPNSPH 70 (295)
T ss_pred CCEEEEECCHHHHHHHHHHHHH-CCCEEE-EEECCHHHHH-----HH---HHCCCCCCCCHHHHHHCCCEEEEECCCCCC
T ss_conf 9789998405769999999997-899589-9929999999-----99---985992039999998438878996689810
Q ss_pred HHHHHH------HHHHCCCEEEEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHH--------HH----HHHHHHHH
Q ss_conf 478887------643237215765022231358999874035--55210000115689--------99----99999999
Q gi|254780279|r 84 TLQSLN------ISAQHNIVHIIGTTGFSVKENEVISSFARN--APIVKSSNMSLGIN--------FL----GFLVETAA 143 (280)
Q Consensus 84 ~~~~~~------~a~~~g~~vViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~--------ll----~~l~~~~a 143 (280)
+.+.+. ...+.|.-+|-.||.- ++.-..+.+..++ +..+-|| .|=|.. +| ....+.+-
T Consensus 71 v~~v~~g~~gi~~~~~~g~iiid~sT~~-p~~~~~~a~~~~~~g~~~lDaP-VsGg~~~A~~G~L~~mvgG~~~~~~~~~ 148 (295)
T PRK11559 71 VKEVALGENGIIEGAKPGTVLIDMSSIA-PLASREISEALKAKGIEMLDAP-VSGGEPKAIDGTLSVMVGGDKAIFDKYY 148 (295)
T ss_pred HHHHHHCCCCCHHCCCCCCEEEECCCCC-HHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHCCCEEEECCCHHHHHHHH
T ss_conf 7766307766011389998899899999-9999999999996598389424-7688688984881499679889999999
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 861156660089999864167899867899999999
Q gi|254780279|r 144 EYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAI 179 (280)
Q Consensus 144 ~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i 179 (280)
++|..... .++|-. +..+|++.+|.+.+
T Consensus 149 piL~~~~~------~i~~~G--~~G~g~~~Kl~nN~ 176 (295)
T PRK11559 149 DLMKAMAG------SVVHTG--EIGAGNVTKLANQV 176 (295)
T ss_pred HHHHCCCC------CEEECC--CCCHHHHHHHHHHH
T ss_conf 99942655------603428--94589999999999
No 63
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=97.72 E-value=0.00012 Score=52.05 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=66.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHH---CCCCEEEEEEECCCCHHH----------CCCHHHH------CCCCCCCCCC--CC
Q ss_conf 7379998998779999999983---899789999964898020----------4553666------0875467545--56
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHN---NPSITLHSIIVRSGSPLI----------GQDVGNF------VGISPMGIKF--SD 63 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~---~~~~eLv~~i~~~~~~~~----------g~d~~~~------~~~~~~~v~i--~~ 63 (280)
+|||||.|+||.||.+.+.+.+ .++++++++=+..+.... |+-.+.+ +-.....+.+ ..
T Consensus 1 tikIgINGFGRIGR~v~R~~~e~~~~~~i~vVaINd~~~~~~~ayLLkyDSvhG~~~~~v~~~~~~l~v~~~~I~~~~~~ 80 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEEECC
T ss_conf 96999978888999999999866889986999978899989999986422678889997897089799999899999558
Q ss_pred CHHHHH---CCCCEEEEEECCCHHHHHHHHHHHCCC-EEEEEEC-----------CCCHHHHHHHHHHHCCCCCEECCCH
Q ss_conf 857852---135504763101024788876432372-1576502-----------2231358999874035552100001
Q gi|254780279|r 64 NLAMAI---QSVDGIIDFSSPALTLQSLNISAQHNI-VHIIGTT-----------GFSVKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 64 dl~~~~---~~~DViIDFT~P~~~~~~~~~a~~~g~-~vViGTT-----------G~~~e~~~~l~~~s~~~~il~apN~ 128 (280)
|++++- -.+|+|||+|-.-...+-++.-++.|. .+|+... |.+++++. .+-.|+ +|=
T Consensus 81 dp~~ipW~~~~vD~ViE~TG~f~~~~~a~~Hl~~GakkViiSaP~~~~~d~tiV~GVN~~~~~------~~~~Ii--SnA 152 (336)
T PRK13535 81 DLASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLR------AEHRIV--SNA 152 (336)
T ss_pred CHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCHHHCC------CCCEEE--ECC
T ss_conf 943398311587599970431167899999987598568982588766686389615756748------665389--757
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 156899999999999861
Q gi|254780279|r 129 SLGINFLGFLVETAAEYL 146 (280)
Q Consensus 129 SiGv~ll~~l~~~~a~~l 146 (280)
|=..|-+--+++.+-+.|
T Consensus 153 SCTTNclAPv~kvl~~~f 170 (336)
T PRK13535 153 SCTTNCIIPVIKLLDDAF 170 (336)
T ss_pred CCCCCEEEEHHHHHHHCC
T ss_conf 533241401255366336
No 64
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.71 E-value=0.00013 Score=51.77 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=72.5
Q ss_pred CEEEEEECCCHHHHHHHHHHH--HCCCCEEEEEEECCCCHHH----------CCCHHH--------HCCCCCCCCCCCCC
Q ss_conf 737999899877999999998--3899789999964898020----------455366--------60875467545568
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIH--NNPSITLHSIIVRSGSPLI----------GQDVGN--------FVGISPMGIKFSDN 64 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~--~~~~~eLv~~i~~~~~~~~----------g~d~~~--------~~~~~~~~v~i~~d 64 (280)
.|||||.|+||.||.+.+.+. .+++++++++-+..+.... |+-.+. ..+-.+..+.-..+
T Consensus 1 MikIgINGFGRIGR~vlR~~~~~~~~~ieiVaINd~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~~ 80 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEEEEEECCC
T ss_conf 90999968887899999999856699869999847998899999867147899989858971998999998878880599
Q ss_pred HHHHH---CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHH------HHHHH-CCCCCEECCCHHHHHH
Q ss_conf 57852---135504763101024788876432372157650-2223135899------98740-3555210000115689
Q gi|254780279|r 65 LAMAI---QSVDGIIDFSSPALTLQSLNISAQHNIVHIIGT-TGFSVKENEV------ISSFA-RNAPIVKSSNMSLGIN 133 (280)
Q Consensus 65 l~~~~---~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~------l~~~s-~~~~il~apN~SiGv~ 133 (280)
++++- -.+|+|||+|-.-...+-++.-++.|.+-|+=| .+-+++ ... =+++. ++-.|+ +|=|=..|
T Consensus 81 p~~i~W~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiSAP~k~~d-~~tiV~GVN~~~~~~~~h~II--S~aSCTTN 157 (337)
T PRK07403 81 PLNLPWAEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEG-IGTYVVGVNHHEYDHEDYNII--SNASCTTN 157 (337)
T ss_pred HHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCC-CCEEEEECCHHHCCCCCCEEE--ECCCHHHH
T ss_conf 666980130998999898654877889998756986799806998887-666998426355375444189--73625876
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999861
Q gi|254780279|r 134 FLGFLVETAAEYL 146 (280)
Q Consensus 134 ll~~l~~~~a~~l 146 (280)
-+--+++.+-+.|
T Consensus 158 clAPv~kvL~~~f 170 (337)
T PRK07403 158 CLAPIAKVIHDNF 170 (337)
T ss_pred HHHHHHHHHHHHC
T ss_conf 6888999887515
No 65
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.69 E-value=0.00027 Score=49.54 Aligned_cols=90 Identities=14% Similarity=0.283 Sum_probs=67.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCC-HHHHH--CCCCEEEEEECC
Q ss_conf 737999899877999999998389978999996489802045536660875467545568-57852--135504763101
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN-LAMAI--QSVDGIIDFSSP 81 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~d-l~~~~--~~~DViIDFT~P 81 (280)
++||+|+|.|+.|..+.--+.+++-+++++.+-++... .|.... ...|+++++. ++.++ +++|+|.|.|+.
T Consensus 1 k~~vAIiGsGnIGtDLm~Ki~rS~~le~~~~vG~dp~S-~GL~rA-----~~lGv~~s~~Gid~ll~~~~idiVFDATSA 74 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPES-DGLARA-----RELGVKTSAEGVDGLLANPDIDIVFDATSA 74 (285)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-HHHHHH-----HHCCCCCCCCCHHHHHHCCCCCEEEECCCH
T ss_conf 93699989983389999998667872169998248898-289999-----984996637688989609997889966984
Q ss_pred CHHHHHHHHHHHCCCEEEE
Q ss_conf 0247888764323721576
Q gi|254780279|r 82 ALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 82 ~~~~~~~~~a~~~g~~vVi 100 (280)
.+..+|.+...+.|+.+|=
T Consensus 75 ~aH~~h~~~l~~~g~~~ID 93 (285)
T TIGR03215 75 KAHARHARLLAELGKIVID 93 (285)
T ss_pred HHHHHHHHHHHHCCCEEEE
T ss_conf 6799999999975997997
No 66
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=97.67 E-value=0.00042 Score=48.25 Aligned_cols=137 Identities=19% Similarity=0.230 Sum_probs=84.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCC--------CCEEEEEEECCCCHH--HCCCHHHHCC-CCCCCCCCCCCHHHHHC-
Q ss_conf 88737999899877999999998389--------978999996489802--0455366608-75467545568578521-
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNP--------SITLHSIIVRSGSPL--IGQDVGNFVG-ISPMGIKFSDNLAMAIQ- 70 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~--------~~eLv~~i~~~~~~~--~g~d~~~~~~-~~~~~v~i~~dl~~~~~- 70 (280)
+..|.|.|+|+|..|..+++++.++. ++.++|+.+++.--+ .|-|+..+.. ....+. ..+++..++
T Consensus 463 ~~~i~i~l~G~G~vG~~ll~qi~~q~~~l~~~~i~l~v~gianS~~~l~~~~Gi~l~~w~~~l~~~~~--~~~~~~~~~~ 540 (817)
T PRK09436 463 DQVIDVFVIGVGGVGGALLEQIKRQQQWLKKKHIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGE--PFDLDRLIRL 540 (817)
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCC--CCCHHHHHHH
T ss_conf 65477999844728799999999999988526944999999757605766899898999999985678--7779999999
Q ss_pred --C----CCEEEEEECCCHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHHHH
Q ss_conf --3----5504763101024788876432372157650----22231358999874035--5521000011568999999
Q gi|254780279|r 71 --S----VDGIIDFSSPALTLQSLNISAQHNIVHIIGT----TGFSVKENEVISSFARN--APIVKSSNMSLGINFLGFL 138 (280)
Q Consensus 71 --~----~DViIDFT~P~~~~~~~~~a~~~g~~vViGT----TG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~~l 138 (280)
. --|+||+|.-+.........+++|+++|.+- |+ +-++.+.|++++++ ..++|-.|.-=|+.++.-+
T Consensus 541 ~~~~~~~n~v~vD~Tas~~~~~~Y~~~l~~g~~vvt~NK~a~s~-~~~~y~~l~~~~~~~~~~~lyEatVgaGlPii~tl 619 (817)
T PRK09436 541 VKEYHLLNPVIVDCTSSAAVADQYADFLAAGFHVVTPNKKANTS-SMAYYHQLREAARKSRRKFLYETNVGAGLPVIENL 619 (817)
T ss_pred HHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
T ss_conf 99638988489988887688999999998599699268646777-89999999999986498587504204686479999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780279|r 139 VETA 142 (280)
Q Consensus 139 ~~~~ 142 (280)
-...
T Consensus 620 ~~l~ 623 (817)
T PRK09436 620 QNLL 623 (817)
T ss_pred HHHH
T ss_conf 9998
No 67
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.64 E-value=0.0013 Score=44.88 Aligned_cols=121 Identities=20% Similarity=0.319 Sum_probs=81.2
Q ss_pred CEEEEEECC-CHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCH--HHHHCCCCEEEEEEC
Q ss_conf 737999899-8779999999983-899789999964898020455366608754675455685--785213550476310
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHN-NPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL--AMAIQSVDGIIDFSS 80 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~-~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl--~~~~~~~DViIDFT~ 80 (280)
++||||+|+ |-.|+.+++.+.+ +..++....+.+..+ .|+...+|.+.. +.+.++. ...+..+|+++ |+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rS--aG~~~~~f~~~~---~~v~~~~~~~~~~~~~Divf-~~a 74 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARS--AGKKYIEFGGKS---IGVPEDAADEFVFSDVDIVF-FAA 74 (334)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCC--CCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEEE-EEC
T ss_conf 918999942355899999998753998405788852311--577160106750---35762113410012499999-917
Q ss_pred C-CHHHHHHHHHHHCCCEEEEEECCCCHHH----------HHHHHHHHCCCC-CEECCCHHHHH
Q ss_conf 1-0247888764323721576502223135----------899987403555-21000011568
Q gi|254780279|r 81 P-ALTLQSLNISAQHNIVHIIGTTGFSVKE----------NEVISSFARNAP-IVKSSNMSLGI 132 (280)
Q Consensus 81 P-~~~~~~~~~a~~~g~~vViGTTG~~~e~----------~~~l~~~s~~~~-il~apN~SiGv 132 (280)
| +.+.++.+.+.++|..+|.-++-|--++ .+.|.+.-+ .. |+--||-|.-.
T Consensus 75 g~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg~IianpNCst~~ 137 (334)
T COG0136 75 GGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RGFIIANPNCSTIQ 137 (334)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEECCCCCHHHHHHHHH-CCCEEECCCHHHHH
T ss_conf 6687899999999769889968731115899877658869899974541-79789889718999
No 68
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=97.57 E-value=0.00038 Score=48.51 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=57.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCC-CCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 79998998779999999983899789999964898020455366608754675-45568578521355047631010247
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGI-KFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v-~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
||+++|+|+||+++++.+.+. +.+++.+.+|+..+.. .+. ...+. ..+.+..++.+.+|+||=...|....
T Consensus 1 KIg~IG~G~mg~ai~~~l~~~-g~~~~~~~~r~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~DvIilavkp~~~~ 72 (93)
T pfam03807 1 KIGIIGAGNMGEALARGLAAA-GHEVIIANSRNPEKAA--ALA-----EELGVGATAVSNEEAAEEADVVILAVKPEDAP 72 (93)
T ss_pred CEEEECCHHHHHHHHHHHHHC-CCCCEEEECCCHHHHH--HHH-----HHHCCCCCCCCHHHHHHCCCEEEEEECHHHHH
T ss_conf 989997009999999999977-9961278648789999--999-----98199764589999974499899997999999
Q ss_pred HHHHHHHH--CCCEEEEEECC
Q ss_conf 88876432--37215765022
Q gi|254780279|r 86 QSLNISAQ--HNIVHIIGTTG 104 (280)
Q Consensus 86 ~~~~~a~~--~g~~vViGTTG 104 (280)
+.++.... .++-+|+-+.|
T Consensus 73 ~vl~~i~~~~~~k~vISv~aG 93 (93)
T pfam03807 73 EVLAELADLLKGKLVISITNG 93 (93)
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999987625089999980999
No 69
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.54 E-value=0.0015 Score=44.39 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=85.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCHH--HCCCHHHHCCCCCCCCCCCCCHHHHHC-
Q ss_conf 8873799989987799999999838---------9978999996489802--045536660875467545568578521-
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNN---------PSITLHSIIVRSGSPL--IGQDVGNFVGISPMGIKFSDNLAMAIQ- 70 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~---------~~~eLv~~i~~~~~~~--~g~d~~~~~~~~~~~v~i~~dl~~~~~- 70 (280)
+..|+|+|+|.|..|+.+++++.++ =++.++|+.+++.--+ .|-|+......-. .....-+++..++
T Consensus 456 ~~~i~v~l~G~G~VG~~ll~qi~~q~~~l~~~~~i~l~v~gianS~~~l~~~~Gi~l~~w~~~l~-~~~~~~~~~~~~~~ 534 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGIDASRALAFFD-DEAVEQDEESLFLW 534 (810)
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHH-HCCCCCCHHHHHHH
T ss_conf 65577999825728899999999999998875097379999974750575688989899999876-52676769999999
Q ss_pred ------CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHHHH
Q ss_conf ------35504763101024788876432372157650----22231358999874035--5521000011568999999
Q gi|254780279|r 71 ------SVDGIIDFSSPALTLQSLNISAQHNIVHIIGT----TGFSVKENEVISSFARN--APIVKSSNMSLGINFLGFL 138 (280)
Q Consensus 71 ------~~DViIDFT~P~~~~~~~~~a~~~g~~vViGT----TG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~~l 138 (280)
.-.|+||+|.-+........++++|+++|.+- |+ +-++.+.|++++++ .+++|-.|..=|..++.-+
T Consensus 535 ~~~~~~~~~v~vD~t~s~~~~~~y~~~l~~g~~vvt~Nk~a~s~-~~~~y~~l~~~~~~~~~~~~yEttVgaGlPii~tl 613 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSS-PSPFYRQIKDAFAKTGRHWLYNATVGAGLPINHTV 613 (810)
T ss_pred HHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEECCCCCCCCC-CHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHH
T ss_conf 98538888779975747889999999998198798256304687-79999999999997097588604324685369999
Q ss_pred H
Q ss_conf 9
Q gi|254780279|r 139 V 139 (280)
Q Consensus 139 ~ 139 (280)
-
T Consensus 614 ~ 614 (810)
T PRK09466 614 R 614 (810)
T ss_pred H
T ss_conf 9
No 70
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.54 E-value=0.0004 Score=48.40 Aligned_cols=122 Identities=16% Similarity=0.282 Sum_probs=77.0
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 9988737999899-87799999999838--99789999964898020455366608754675455685785213550476
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIID 77 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViID 77 (280)
|++ .+||||+|+ |-.||.+++.+.+. |-.+|... .++.+ .|+.+. .....+.+.+--+..+..+|+++
T Consensus 1 M~~-~~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~l-aS~~S--aGk~i~----~~~~~~~v~~~~~~~~~~~di~f- 71 (337)
T PRK08040 1 MSE-GWNIALLGATGAVGEALLETLAERQFPVGEIYAL-AREES--AGETLR----FGGKSITVQDAAEFDWTQAQLAF- 71 (337)
T ss_pred CCC-CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE-ECCCC--CCCEEE----ECCCEEEEEECCCCCCCCCCEEE-
T ss_conf 999-9879998885088999999997179981359999-88888--997777----89918899977703324698899-
Q ss_pred EE-CCCHHHHHHHHHHHCCCEEEEEECCCCHH-H---------HHHHHHHHCCCCCEECCCHHHHH
Q ss_conf 31-01024788876432372157650222313-5---------89998740355521000011568
Q gi|254780279|r 78 FS-SPALTLQSLNISAQHNIVHIIGTTGFSVK-E---------NEVISSFARNAPIVKSSNMSLGI 132 (280)
Q Consensus 78 FT-~P~~~~~~~~~a~~~g~~vViGTTG~~~e-~---------~~~l~~~s~~~~il~apN~SiGv 132 (280)
|+ ..+.+.++.+.+.++|..+|--++-|--+ + -+.|+.+ ++..|+-.||-|--.
T Consensus 72 f~a~~~~s~~~~~~a~~aG~~VIDnss~~Rm~~dVPLvvPeVN~~~l~~~-~~~~IianPNCsT~~ 136 (337)
T PRK08040 72 FVAGKEASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADY-RNRNVIAVADSLTSQ 136 (337)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCCCHHHHHHH-CCCCEEECCCHHHHH
T ss_conf 91771788888999984895999796131058887421674087888743-249825457708888
No 71
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=97.53 E-value=0.00059 Score=47.24 Aligned_cols=112 Identities=14% Similarity=0.229 Sum_probs=87.2
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEEC
Q ss_conf 8737999899-8779999999983899789999964898020455366608754675455685785213--550476310
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSS 80 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~ 80 (280)
+.-||.+-|. |+||....++..+. +..+++++.... .+..-.++++++..+++++. +|+-+=|-+
T Consensus 7 k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgk-----------gG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp 74 (293)
T COG0074 7 KDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGK-----------GGQTILGLPVFNTVEEAVKETGANASVIFVP 74 (293)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-CCCEEECCCCCC-----------CCEEECCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 8974898336542003889999972-985664236897-----------7438837547899999987028977999648
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHHHCCCC-CEECCC
Q ss_conf 10247888764323721576502-223135899987403555-210000
Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTT-GFSVKENEVISSFARNAP-IVKSSN 127 (280)
Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~l~~~s~~~~-il~apN 127 (280)
|....+-+..|+++++++|++-| |....+.-+++++++... .++.||
T Consensus 75 ~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiGPn 123 (293)
T COG0074 75 PPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIGPN 123 (293)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCC
T ss_conf 1778999999985799579999599988899999999986697998799
No 72
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=97.51 E-value=0.00046 Score=47.97 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=61.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC--HHH-------CCCHH----HH-----CCCC-C-----CCCCC-
Q ss_conf 79998998779999999983899789999964898--020-------45536----66-----0875-4-----67545-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS--PLI-------GQDVG----NF-----VGIS-P-----MGIKF- 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~--~~~-------g~d~~----~~-----~~~~-~-----~~v~i- 61 (280)
||.|+|+|-.|..+++.+... ++.=...+|.+.- ..+ ..|+| +. .... . ....+
T Consensus 3 kVlivG~GglG~~~~~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~ 81 (134)
T pfam00899 3 RVLVVGAGGLGSPAAEYLARA-GVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEAYPERLT 81 (134)
T ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 899989888999999999993-8974999989567632227224233646688107999999997789958999925679
Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC-CCC
Q ss_conf 568578521355047631-010247888764323721576502-223
Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT-GFS 106 (280)
Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT-G~~ 106 (280)
.++.++.+..+|+|||++ +++.-...-++|.++++|+|.|.+ ||.
T Consensus 82 ~~~~~~~~~~~DvVi~~~Dn~~~r~~ln~~c~~~~ip~i~~~~~g~~ 128 (134)
T pfam00899 82 PENLEELLKGADLVVDALDNFAARYLLNDACVKRGIPLISAGALGFD 128 (134)
T ss_pred HHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf 77876426448899999899999999999999859989995546788
No 73
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.50 E-value=0.00081 Score=46.28 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=59.3
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 7999899-877999999998389978999996489802045536660875-46754556857852135504763101024
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
||+|+|+ |-.|+.+++.+.+++.+++...+.++. ..|+.+......- .......+........+|+++-++....+
T Consensus 1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~--~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~~s 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASAR--SAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECC--CCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCHHH
T ss_conf 98998945199999999998589974577774046--5897578859664577350565331100179999993882788
Q ss_pred HHHHHH---HHHCCCEEEEEECCC
Q ss_conf 788876---432372157650222
Q gi|254780279|r 85 LQSLNI---SAQHNIVHIIGTTGF 105 (280)
Q Consensus 85 ~~~~~~---a~~~g~~vViGTTG~ 105 (280)
.++.++ +.+.|..+|-=+.-|
T Consensus 79 ~~~~~~~~~~~~~g~~VIDlSadf 102 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCHHH
T ss_conf 999998898875698798684775
No 74
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.45 E-value=0.00084 Score=46.17 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=62.6
Q ss_pred CE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC------CCHHHHCC--C--------CCCCCCCCCCHHH
Q ss_conf 73-799989987799999999838997899999648980204------55366608--7--------5467545568578
Q gi|254780279|r 5 PM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG------QDVGNFVG--I--------SPMGIKFSDNLAM 67 (280)
Q Consensus 5 ~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g------~d~~~~~~--~--------~~~~v~i~~dl~~ 67 (280)
|| ||+|+|+|-||+.++...+ ..++++. .+|.+...... +.+..... . ....+.+++++++
T Consensus 1 Pi~~VaViGaG~mG~giA~~~a-~~G~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~ 78 (308)
T PRK06129 1 PMGSIAIVGAGLIGRAWAIVFA-RAGHRVR-LWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLAD 78 (308)
T ss_pred CCCEEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHH
T ss_conf 9987999777899999999998-5899389-9989889999999999999999997699987659999835072288899
Q ss_pred HHCCCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 521355047631010-----24788876432372157650222313589
Q gi|254780279|r 68 AIQSVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280)
Q Consensus 68 ~~~~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280)
++.++|.||+...-+ .++.-++.+......+.+-|+|+...++.
T Consensus 79 al~~adlViEav~E~l~iK~~lf~~le~~~~~~~IlaSnTSsl~is~la 127 (308)
T PRK06129 79 AVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFT 127 (308)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 8474999999980779999999999996569855898455538899999
No 75
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.43 E-value=0.001 Score=45.59 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=73.4
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 737999899-87799999999838--997899999648980204553666087546754556857852135504763101
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280)
.+||||+|+ |-.|+++++.+.+. |..++.....++. .|+.+. +.+ ..+.+.+--.+.+.++|+++ |+.|
T Consensus 2 m~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~s---~G~~~~-~~~---~~~~~~~~~~~~~~~~Di~f-~a~~ 73 (348)
T PRK06598 2 MYNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSRS---GGKAPS-FGG---KTLLVDALDIEDLKGLDIAL-FSAG 73 (348)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC---CCCCCE-ECC---CEEEEEECCHHHHHCCCEEE-ECCC
T ss_conf 847999898459999999999867999624999987566---898750-689---55478627855760799999-8688
Q ss_pred -CHHHHHHHHHHHCCCEEEEEECCCC----------HHHHHHHHHHHCCCCCEECCCHHHHH
Q ss_conf -0247888764323721576502223----------13589998740355521000011568
Q gi|254780279|r 82 -ALTLQSLNISAQHNIVHIIGTTGFS----------VKENEVISSFARNAPIVKSSNMSLGI 132 (280)
Q Consensus 82 -~~~~~~~~~a~~~g~~vViGTTG~~----------~e~~~~l~~~s~~~~il~apN~SiGv 132 (280)
+.+.++.+.+.+.|..+|--+.-|- +=..+.|+++. ...++-.||-+--.
T Consensus 74 ~~~s~~~~~~~~~~g~~VIDlSs~fR~~~~vplvvPEiN~~~i~~~~-~~~iIAnPgC~~t~ 134 (348)
T PRK06598 74 GDYSKEVAPKLRAAGGVVIDNASALRMDPDVPLVVPEVNPDAIKDAL-KKGIIANPNCTTSL 134 (348)
T ss_pred CHHHHHHHHHHHHCCCEEEECCHHHCCCCCCEEECCCCCHHHHHHCC-CCCCEECCCCHHHH
T ss_conf 23568888999758989998864310368843764620789997341-36822388819999
No 76
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.42 E-value=0.00095 Score=45.82 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=57.3
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 737999899-8779999999983899789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
+.||+|+|+ |-.|.++++.+.++|++||+.+..... +|.. -..+.+.++||++-+.+..+
T Consensus 2 ~~kV~I~GasGytG~EL~rlL~~Hp~vel~~i~~~~~-----k~~~--------------~~~~~~~~~DvvFlalPh~~ 62 (314)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR-----KDPA--------------ARRELLNAADIAILCLPDDA 62 (314)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCC-----CCHH--------------HHHHHHHCCCEEEECCCCHH
T ss_conf 8269998998856999999997599829999671125-----5755--------------67877506999999999778
Q ss_pred HHHHHHHHHHCCCEEEEEEC
Q ss_conf 47888764323721576502
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViGTT 103 (280)
..+.+..+.+.++.+|=-++
T Consensus 63 s~~~v~~~~~~g~kVIDLSa 82 (314)
T PRK11863 63 AREAVALIDNPATRVIDAST 82 (314)
T ss_pred HHHHHHHHHHCCCEEEECCC
T ss_conf 99999988627988998985
No 77
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.39 E-value=0.0011 Score=45.35 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=75.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHH-HHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCC--CCEEEE
Q ss_conf 8873799989987799999999-8389978999996489802045536660875467545--5685785213--550476
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEI-HNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQS--VDGIID 77 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i-~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~--~DViID 77 (280)
+..-+++|+|+|++|++++..- -+..++.+++++|.++. .+|+.+ .++++ .+++++.+++ +++.|=
T Consensus 82 ~~~~~v~lvGaGnLG~AL~~y~gf~~~gf~Iva~FD~dp~-kiG~~i--------~gi~V~~i~~L~~~i~~~~i~iaIi 152 (211)
T PRK05472 82 DKTTNVALVGAGNLGRALLNYNGFKKRGFKIVAAFDVDPE-KVGTKI--------GGIPVYHIDELEEVIKENDIEIAIL 152 (211)
T ss_pred CCCCEEEEECCCHHHHHHHHCCCHHHCCCEEEEEECCCHH-HCCCEE--------CCEEEECHHHHHHHHHHHCCCEEEE
T ss_conf 9975089988877999998487623189789999748978-859883--------8838734999999999819938999
Q ss_pred EECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 3101024788876432372157650222313589998740355521000011568999
Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFL 135 (280)
Q Consensus 78 FT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll 135 (280)
..+.+++-+.+....+.|+.-|. -|++-.++.= +. -++.--+++.+...|
T Consensus 153 aVP~~~AQ~vad~Lv~aGIk~Il---NFap~~L~vP----~~-V~V~nvDl~~~L~~L 202 (211)
T PRK05472 153 TVPAEAAQEVADRLVEAGIKGIL---NFAPVRLNVP----ED-VIVQNVDLTVELQTL 202 (211)
T ss_pred ECCHHHHHHHHHHHHHHCCEEEE---ECCCCCCCCC----CC-CEEEECCHHHHHHHH
T ss_conf 55768899999999981983999---7687244799----99-789973709899999
No 78
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.39 E-value=0.0011 Score=45.26 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=59.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
|||+|+|.|-||..++..+.+..-..-+.++|++.... ......|.-. -..+.+ .+.++|+||=+++|..+.
T Consensus 1 M~I~IiGlGLiGgSla~alk~~~~~~~V~g~d~~~~~~---~~A~~~g~id----~~~~~~-~i~~aDlVila~Pv~~~~ 72 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKENKLISCVYGYDHNEEHE---KDALDLGLVD----EIVEFE-EIKECDVIFLAIPVDAII 72 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCHHHH---HHHHHCCCCC----CCCCHH-HCCCCCEEEEECCHHHHH
T ss_conf 98999900878999999999509986799995999999---9999869986----106731-236579899917699999
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 888764323721576502223135
Q gi|254780279|r 86 QSLNISAQHNIVHIIGTTGFSVKE 109 (280)
Q Consensus 86 ~~~~~a~~~g~~vViGTTG~~~e~ 109 (280)
+.++.........++--+|=++..
T Consensus 73 ~~l~~l~~l~~~~iitDv~SvK~~ 96 (275)
T PRK08507 73 EILQKLLDIKENTTIIDLGSTKAK 96 (275)
T ss_pred HHHHHHHHCCCCCEEEECCCHHHH
T ss_conf 999998604678889834312899
No 79
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.39 E-value=0.00062 Score=47.07 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCEEEEEECCCHHHHHHHHHH-HHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEEC
Q ss_conf 873799989987799999999-83899789999964898020455366608754675455685785213--550476310
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEI-HNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSS 80 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i-~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~ 80 (280)
+..+|+|+|+|++|++++..- .++.++.+++++|.+++ .+|+.++. ..+.--++++..+++ +|+.|- |.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~-~VG~~~~~------v~V~~~d~le~~v~~~dv~iaiL-tV 154 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPD-KVGTKIGD------VPVYDLDDLEKFVKKNDVEIAIL-TV 154 (211)
T ss_pred CCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHH-HHCCCCCC------EEEECHHHHHHHHHHCCCCEEEE-EC
T ss_conf 403489990570888986074233269359999617878-83752488------14552688888988617618999-73
Q ss_pred CC-HHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 10-2478887643237215765022231358
Q gi|254780279|r 81 PA-LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280)
Q Consensus 81 P~-~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280)
|+ ..-+.++...++|+.-|.- |++-++
T Consensus 155 Pa~~AQ~vad~Lv~aGVkGIlN---FtPv~l 182 (211)
T COG2344 155 PAEHAQEVADRLVKAGVKGILN---FTPVRL 182 (211)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE---CCCEEE
T ss_conf 4898999999999838735884---263575
No 80
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=97.38 E-value=0.0041 Score=41.46 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=83.5
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEEC
Q ss_conf 8737999899-877999999998389978999996489802045536660875467545568578521--3550476310
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSS 80 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~ 80 (280)
..-||.+-|. ||-|+...+...+ -+..+|+++..... | ....++|+++...++.+ .+|+-+=|-.
T Consensus 22 ~~TkViVQGiTG~~g~~h~~~m~~-yGT~iVaGVtPgkg---G--------~~~~gvPVf~tV~eAv~~~~~d~SvIfVP 89 (309)
T PTZ00187 22 KDTKVICQGITGKQGTFHTEQALA-YGTKMVGGVSPKKA---G--------TTHLGLPVFGTVAEAKKATGADASVIYVP 89 (309)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHH-HCCCEEEEECCCCC---C--------EECCCCCCCCCHHHHHHHHCCCEEEEECC
T ss_conf 998199976888288899999998-68977987478868---7--------24379887665999998568987999626
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHH-HCC-CCCEECCCH
Q ss_conf 10247888764323721576502-2231358999874-035-552100001
Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTT-GFSVKENEVISSF-ARN-APIVKSSNM 128 (280)
Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~l~~~-s~~-~~il~apN~ 128 (280)
|..+.+-+..|+++++++|++.| |....++-++..+ .++ ...|+.||-
T Consensus 90 p~~a~dAilEAi~agI~liV~ITEgIP~~Dm~~v~~~~~~~~~t~liGPNc 140 (309)
T PTZ00187 90 PPHAAAAIIEAIEAEIPLVVVITEGIPQHDMLKVKSMLLSQNKTRLIGPNC 140 (309)
T ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 411188999999779987999338988888999999998669959989999
No 81
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.37 E-value=0.001 Score=45.52 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=66.2
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---------------CCCHHHHCCCCCC--------
Q ss_conf 99887379998998779999999983899789999964898020---------------4553666087546--------
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI---------------GQDVGNFVGISPM-------- 57 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~---------------g~d~~~~~~~~~~-------- 57 (280)
|++.+-.||++|-|.||+.++.-+.+ .+++++ +++|+..+.. -.++.++...-+.
T Consensus 1 m~~~~~~IGiIGLGvMG~nmA~Nl~~-~G~~V~-vynrt~~k~~~~~~~~~~~~~~i~~~~sl~e~v~sl~~pr~Iilmv 78 (474)
T PTZ00142 1 MDEGESDIGLIGLAVMGQNLSLNMYS-RGFKVS-VYNRTTEKVEEFMKKAKEGNKFVKGYHSLEELVNSLKRPRRVMLLI 78 (474)
T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEE
T ss_conf 99776746687363867999999997-898799-9779879999999853224677646678999997379999899982
Q ss_pred --CCCCC---CCHHHHHCCCCEEEEEE--CCCHHHHHHHHHHHCCCEEEE-EECC
Q ss_conf --75455---68578521355047631--010247888764323721576-5022
Q gi|254780279|r 58 --GIKFS---DNLAMAIQSVDGIIDFS--SPALTLQSLNISAQHNIVHII-GTTG 104 (280)
Q Consensus 58 --~v~i~---~dl~~~~~~~DViIDFT--~P~~~~~~~~~a~~~g~~vVi-GTTG 104 (280)
|-++. +.+...+++-|+|||.+ .+..+....+.|.+.|++.+= |++|
T Consensus 79 ~aG~~Vd~vi~~L~~~L~~GDIIID~GNs~~~dt~rr~~~l~~kgI~fld~GVSG 133 (474)
T PTZ00142 79 KAGEAVDEFIDNILPHLEKGDIIIDGGNEWYNNSERRIKLCKEKGILYIGMGVSG 133 (474)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 6982599999999850889998987998886579999999985799186478884
No 82
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.34 E-value=0.0021 Score=43.38 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=53.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-C-----CCHHHHC---CCC--------CCCCCCCCCHHHHH
Q ss_conf 79998998779999999983899789999964898020-4-----5536660---875--------46754556857852
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI-G-----QDVGNFV---GIS--------PMGIKFSDNLAMAI 69 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~-g-----~d~~~~~---~~~--------~~~v~i~~dl~~~~ 69 (280)
||+|+|+|-||+.++...+. .+++++ .+|++..... + +...... ... ...+.+++|+++++
T Consensus 5 ~VaViGaG~MG~gIA~~~a~-~G~~V~-l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~ 82 (288)
T PRK08293 5 KVTVAGAGVLGSQIAFQTAF-KGFDVT-IYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLAQAV 82 (288)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHH
T ss_conf 89998978899999999995-799289-9989889999999999999999997059991789999980773058989984
Q ss_pred CCCCEEEEEECCCH-----HHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 13550476310102-----47888764323721576502223135
Q gi|254780279|r 70 QSVDGIIDFSSPAL-----TLQSLNISAQHNIVHIIGTTGFSVKE 109 (280)
Q Consensus 70 ~~~DViIDFT~P~~-----~~~~~~~a~~~g~~vViGTTG~~~e~ 109 (280)
.++|+||+.-.-+. ++.-++........+.+-|++++-.+
T Consensus 83 ~~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlaSNTSsl~it~ 127 (288)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEQLAEVAPEKTIFATNSSTLLPSQ 127 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 669999997808799999999999974677669986687676579
No 83
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.31 E-value=0.002 Score=43.63 Aligned_cols=98 Identities=15% Similarity=0.284 Sum_probs=61.5
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCCCCHHHHHCCCCEEEEEECC-
Q ss_conf 37999899-8779999999983899789999964898020455366608754--6754556857852135504763101-
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFSDNLAMAIQSVDGIIDFSSP- 81 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~~dl~~~~~~~DViIDFT~P- 81 (280)
|+|.|+|+ |..|+.+++.+.+ .++++.+. +|+..+. ..+.+ .|..- .++.-.+++..+++.+|+||+.+..
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~-~G~~Vr~l-vRnp~ka--~~l~~-~Gve~v~gDl~dpesl~~Al~GvdaVi~~~~~~ 75 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALD-EGYQVKCL-VRNLRKA--AFLKE-WGAELVYGDLSLPETIPPALEGITAIIDASTSR 75 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCCEEEE-ECCHHHH--HHHHH-CCCEEEEECCCCHHHHHHHHCCCCEEEEECCCC
T ss_conf 9799989985899999999996-88908999-5786763--23421-596799942788778999965996799945667
Q ss_pred -CH-----------HHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf -02-----------4788876432372157650222313
Q gi|254780279|r 82 -AL-----------TLQSLNISAQHNIVHIIGTTGFSVK 108 (280)
Q Consensus 82 -~~-----------~~~~~~~a~~~g~~vViGTTG~~~e 108 (280)
.. ....++.|.++|+.-++=.+.+..+
T Consensus 76 ~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~ 114 (319)
T CHL00194 76 PSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAE 114 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 788620889889889999999998499889996135666
No 84
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=97.28 E-value=0.0015 Score=44.46 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=90.1
Q ss_pred CCEEEEEECC----CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCC-CCCCCCHHHH-HCCCCEEEE
Q ss_conf 8737999899----877999999998389978999996489802045536660875467-5455685785-213550476
Q gi|254780279|r 4 SPMRISVLGG----GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMG-IKFSDNLAMA-IQSVDGIID 77 (280)
Q Consensus 4 ~~IkV~I~Ga----GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~-v~i~~dl~~~-~~~~DViID 77 (280)
+|=+|||+|| ||.|-.+.+-+.+..=-=-+..+.++.. +.-.| ++.+.++.++ -+++|+.|=
T Consensus 6 ~P~SvAVIGAS~~~gKVGy~i~~NL~~~Gy~G~~YPVNpk~~------------i~i~Gr~k~Y~~~~~~dP~~VDLAVi 73 (457)
T TIGR02717 6 NPKSVAVIGASRDEGKVGYAIMKNLIEGGYKGKIYPVNPKAG------------IEILGRVKAYPSVLEIDPDEVDLAVI 73 (457)
T ss_pred CCCCEEEECCCCCCCCCCHHHHEEEECCCCEEEEEEECCCCC------------EEEEECCCCCCCHHHCCCCCCCEEEE
T ss_conf 887158971248898510022000003783036876227887------------14630114578711148997347999
Q ss_pred EECCCHHHHHHHHHHHCCCE-EEEEECCCCH------HHHHHHHHHHCCCCC-EECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 31010247888764323721-5765022231------358999874035552-1000011568999999999998611
Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIV-HIIGTTGFSV------KENEVISSFARNAPI-VKSSNMSLGINFLGFLVETAAEYLL 147 (280)
Q Consensus 78 FT~P~~~~~~~~~a~~~g~~-vViGTTG~~~------e~~~~l~~~s~~~~i-l~apN~SiGv~ll~~l~~~~a~~l~ 147 (280)
..+++.+...++-|-+.|+. +||=|.||.| +-+++|.++|++-.+ |+.||..==+|--.++....|+.++
T Consensus 74 vvPa~~vp~v~eECG~KGVkg~vvI~AGF~E~G~eG~~LE~~l~~~a~kYg~Rl~GPNclG~~nt~~~lNAtFA~~~p 151 (457)
T TIGR02717 74 VVPAKLVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQKLVEIARKYGMRLLGPNCLGIINTEIKLNATFAPTMP 151 (457)
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHCCCCCCC
T ss_conf 728567999999986179518999714864531678999999999997678817767362258144021100135788
No 85
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=97.28 E-value=0.0042 Score=41.41 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=37.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH----------HHCCCHHHHCCCC-CCCCCCCCCHHHHHCCCCE
Q ss_conf 3799989987799999999838997899999648980----------2045536660875-4675455685785213550
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP----------LIGQDVGNFVGIS-PMGIKFSDNLAMAIQSVDG 74 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~----------~~g~d~~~~~~~~-~~~v~i~~dl~~~~~~~DV 74 (280)
|||+|+|.|..|-.++-.++ ..+++++ ++|.+... ....++.+..... ......+++..+.+.++|+
T Consensus 1 MkI~ViGlGyVGl~~a~~la-~~G~~V~-g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i~~~d~ 78 (185)
T pfam03721 1 MRIAVIGLGYVGLPTAVCLA-EIGHDVV-GVDINQSKIDKLNNGKIPIYEPGLEELLKANVSGRLRFTTDVAEAIKEADV 78 (185)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEE-EEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCE
T ss_conf 97999897874899999999-4899399-997998999998626897467588999987340896998787998844989
Q ss_pred EE
Q ss_conf 47
Q gi|254780279|r 75 II 76 (280)
Q Consensus 75 iI 76 (280)
++
T Consensus 79 i~ 80 (185)
T pfam03721 79 IF 80 (185)
T ss_pred EE
T ss_conf 99
No 86
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.24 E-value=0.0021 Score=43.48 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=61.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----------CCCCCCCCCC
Q ss_conf 379998998779999999983899789999964898-------------0204553666-----------0875467545
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----------VGISPMGIKF 61 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----------~~~~~~~v~i 61 (280)
-||.|+|+|-+|..++..+... ++-=...+|.+.- ..+|+.-.+. ..+......+
T Consensus 22 s~VlivG~GGlGs~~~~~La~~-Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~~~i 100 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL 100 (228)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCC
T ss_conf 9789988778899999999983-997589997874556764221023786687895999999998548875303132100
Q ss_pred -CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf -568578521355047631-01024788876432372157650-2223
Q gi|254780279|r 62 -SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 -~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
.+++++.++.+|+|||+| +++.-.-.-+.|.++++|+|.|. .||.
T Consensus 101 ~~~~~~~~~~~~DlVid~~Dn~~~R~~ln~~~~~~~iP~i~g~~~g~~ 148 (228)
T cd00757 101 DAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFE 148 (228)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCE
T ss_conf 575699887379899987799889999999999839988999740028
No 87
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.24 E-value=0.0017 Score=44.12 Aligned_cols=100 Identities=22% Similarity=0.246 Sum_probs=63.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC---------CHHHCCCHHH----------HCCCCCCCCCC-----
Q ss_conf 37999899877999999998389978999996489---------8020455366----------60875467545-----
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG---------SPLIGQDVGN----------FVGISPMGIKF----- 61 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~---------~~~~g~d~~~----------~~~~~~~~v~i----- 61 (280)
-||.|+|+|-+|..++..+.. .++--..++|++. .-+...|++. ....-...+.+
T Consensus 25 s~VlIVGaGGLGs~~a~~La~-aGVG~l~ivD~D~Ve~SNL~RQ~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~I~~~~~ 103 (337)
T PRK12475 25 KHVLIIGAGALGAANAEALVR-AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQYKPKAIAAAEHLRKINSEVEIVPVVT 103 (337)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH
T ss_conf 969999777778999999998-2898699984998314467453002221215574889999999984499974475131
Q ss_pred ---CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf ---568578521355047631-01024788876432372157650-2223
Q gi|254780279|r 62 ---SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 ---~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
.++++++++.+|+|||.| +.+.-+-.-+.|.++++|+|.|. .||.
T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~PlV~ga~~g~~ 153 (337)
T PRK12475 104 DVTVEEMEELIKEVDLIIDATDNFDTRLLINDISQKYNIPWIYGGCVGSY 153 (337)
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCE
T ss_conf 19979999998618899988889999999999999969998998870568
No 88
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.23 E-value=0.002 Score=43.54 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=43.7
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH------HCCCHHHHCC----CCCCCCCCCCCHHHHHC
Q ss_conf 9988737999899877999999998389978999996489802------0455366608----75467545568578521
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL------IGQDVGNFVG----ISPMGIKFSDNLAMAIQ 70 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~------~g~d~~~~~~----~~~~~v~i~~dl~~~~~ 70 (280)
|.+.-=||+|+|+|-||+.++...+. .++++. .+|++.... +.+.++.... .....+.+++|++ .+.
T Consensus 1 M~~~Ik~VaViGAG~MG~gIA~~~a~-~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~l~-a~~ 77 (310)
T PRK06130 1 MDNPIQNLAIIGAGAMGSGIAALFAS-KGLDVV-LIDPMPGALERAAQVIERQLGVYAPGAIAGTLQRIRMDAGLE-AAC 77 (310)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCHH-HHC
T ss_conf 98998889897877999999999985-899889-997999999999999999865327666999874102137888-966
Q ss_pred CCCEEEEEE
Q ss_conf 355047631
Q gi|254780279|r 71 SVDGIIDFS 79 (280)
Q Consensus 71 ~~DViIDFT 79 (280)
++|+||+.-
T Consensus 78 ~aDlViEav 86 (310)
T PRK06130 78 GADLVIEAV 86 (310)
T ss_pred CCCEEEECC
T ss_conf 899999888
No 89
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.21 E-value=0.0024 Score=43.10 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=53.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CCCHHHHCC---C-------CCCCCCCCCCHHHHHC
Q ss_conf 79998998779999999983899789999964898020------455366608---7-------5467545568578521
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQDVGNFVG---I-------SPMGIKFSDNLAMAIQ 70 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~d~~~~~~---~-------~~~~v~i~~dl~~~~~ 70 (280)
||+|+|+|.||+.++...+. .+++++ .+|++..... ..-+..... . ....+.++.|+++++.
T Consensus 4 kV~ViGaG~MG~~IA~~~a~-~G~~V~-l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a~~ 81 (289)
T PRK09260 4 KIVVVGAGVMGRGIAYVFAS-SGFQTT-LVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEAVA 81 (289)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHC
T ss_conf 69997968878999999996-899889-9979989999999999999999987179998999999955876688899847
Q ss_pred CCCEEEEEEC-----CCHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 3550476310-----102478887643237215765022231
Q gi|254780279|r 71 SVDGIIDFSS-----PALTLQSLNISAQHNIVHIIGTTGFSV 107 (280)
Q Consensus 71 ~~DViIDFT~-----P~~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280)
++|+||+.-. ...++.-++....-...+.+-|++++-
T Consensus 82 ~aDlViEav~E~l~iK~~v~~~l~~~~~~~~IlaSNTSsl~i 123 (289)
T PRK09260 82 GADLLIEAVPEKLEIKQAVFETADAHAPAEALIATNTSTLSP 123 (289)
T ss_pred CCCEEEECCCCCHHHCHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 699999888686323689999986068998089855888771
No 90
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.21 E-value=0.0035 Score=41.96 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=44.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCC--CHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 37999899877999999998389978999996489802045--536660875467545568578521355047
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQ--DVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~--d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
|||+|+|+|..|+.++-.+...+-..=...+|.......|. |+.........-.....|.+ .++++||||
T Consensus 1 mKI~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~DL~~a~~~~~~~~i~~~~~~-~l~daDvVV 72 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA-DCKGADVVV 72 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHH-HHCCCCEEE
T ss_conf 979999948889999999986799887999918898451256876624103688168409999-977999999
No 91
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.20 E-value=0.0032 Score=42.21 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=52.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---------CCCHHHHCCCCC---C---CCCC-------CC
Q ss_conf 379998998779999999983899789999964898020---------455366608754---6---7545-------56
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI---------GQDVGNFVGISP---M---GIKF-------SD 63 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~---------g~d~~~~~~~~~---~---~v~i-------~~ 63 (280)
|||+++|-|+||+.++..+.+ .+++++ +++++..+.. ..++.++...-. . -++- .+
T Consensus 1 MkIGfIGLG~MG~~mA~nL~~-~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~e~~~~l~~~~vI~~~vp~g~~v~~vi~ 78 (298)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRE-DGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRAIWVMVPAGEVTESVLK 78 (298)
T ss_pred CEEEEECHHHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHHHHCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH
T ss_conf 979998346768999999997-799489-984998999999986995428999999737899889997689455999999
Q ss_pred CHHHHHCCCCEEEEEEC--CCHHHHHHHHHHHCCCEEE
Q ss_conf 85785213550476310--1024788876432372157
Q gi|254780279|r 64 NLAMAIQSVDGIIDFSS--PALTLQSLNISAQHNIVHI 99 (280)
Q Consensus 64 dl~~~~~~~DViIDFT~--P~~~~~~~~~a~~~g~~vV 99 (280)
++...+++-|+|||.|+ |..+....+.+.+.|+.++
T Consensus 79 ~l~~~L~~g~iiID~sts~~~~t~~~~~~l~~~gi~fl 116 (298)
T PRK12490 79 DLYPLLSPGDIVIDGGNSRYKDDLRRAEELAERGIHYV 116 (298)
T ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 68852699988852887899999999999997599030
No 92
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.19 E-value=0.0046 Score=41.10 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=62.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCC-------CHHHHCC--C-CCCCCCCCCCHHHHHCCCC
Q ss_conf 37999899877999999998389978999996489802--045-------5366608--7-5467545568578521355
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQ-------DVGNFVG--I-SPMGIKFSDNLAMAIQSVD 73 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~-------d~~~~~~--~-~~~~v~i~~dl~~~~~~~D 73 (280)
.||+|+|+|-||+.++...+ ..++++. .+|.++... ..+ ....... . ....+.+.+++++++..+|
T Consensus 3 kkVAVIGAGvMGsGwAa~FA-~aG~~V~-L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dAD 80 (489)
T PRK07531 3 MKAACIGGGVIGGGWAARFL-LNGWDVA-VFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGAD 80 (489)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCC
T ss_conf 67999871886899999999-5799699-994887899999999999999877532035564677686388999974799
Q ss_pred EEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 047631010-----24788876432372157650222313589
Q gi|254780279|r 74 GIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280)
Q Consensus 74 ViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280)
.|++...-. .++.-++.+...+..+-+-||||...++.
T Consensus 81 lVqEaVPE~LdIKq~vf~eLd~~~~~~aIiASsTSgl~~S~l~ 123 (489)
T PRK07531 81 WIQESVPERLDLKHKVLAEIEAAARPDALIGSSTSGFKPSELQ 123 (489)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH
T ss_conf 9998785669999999999997679983898536658899998
No 93
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.19 E-value=0.0023 Score=43.19 Aligned_cols=126 Identities=13% Similarity=0.198 Sum_probs=69.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE-ECCCH
Q ss_conf 799989987799999999838997899999648980204--553666087546754556857852135504763-10102
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF-SSPAL 83 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF-T~P~~ 83 (280)
||+|+|+|+.|..++-.+...+-..=...+|.++....| .|+..........+.+..+..+.+.++||||=- ..|.-
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~~~~~~~~aDvvVitAG~~rk 81 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQK 81 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEECCCCCCC
T ss_conf 59999969889999999985799877999818987017699988701330599739960887884789999990676679
Q ss_pred -HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf -478887643237215765022231358999874035552100001156899999999999
Q gi|254780279|r 84 -TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280)
Q Consensus 84 -~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280)
....... ++.+..++ .+....|++++.+.-++...|- +++|..++++.+
T Consensus 82 ~g~~R~dL-l~~N~~I~-------k~i~~~i~~~~p~aivivvtNP---vDvmt~~~~k~s 131 (306)
T cd05291 82 PGETRLDL-LEKNAKIM-------KSIVPKIKASGFDGIFLVASNP---VDVITYVVQKLS 131 (306)
T ss_pred CCCCHHHH-HHHHHHHH-------HHHHHHHHHCCCCCEEEEECCC---HHHHHHHHHHHC
T ss_conf 99987899-99789999-------9999998722997189993581---678999999850
No 94
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.19 E-value=0.0022 Score=43.33 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=63.2
Q ss_pred CCCCCE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 998873-7999899877999999998389978999996489802045536660875467545568578521355047631
Q gi|254780279|r 1 MHQSPM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 1 M~~~~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT 79 (280)
|....+ ||+|+|.|-||..++..+.+..-..-+.+++++.... +.....|.. -.+.+++.+.+..+|+||=+|
T Consensus 1 ~~~~~f~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l---~~A~~~g~i---d~~~~~~~e~~~~~DlIilat 74 (307)
T PRK07502 1 MSAPLFDRVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETR---ARARELGLG---DRVTTSAAEAVKGADLVILCV 74 (307)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHH---HHHHHCCCC---CHHCCCHHHHHCCCCEEEEEC
T ss_conf 98564566899927879999999998549985799984999999---999986997---511277766404589799917
Q ss_pred CCCHHHHHHHHHHHC-CCEEEEEECCCCHHH
Q ss_conf 010247888764323-721576502223135
Q gi|254780279|r 80 SPALTLQSLNISAQH-NIVHIIGTTGFSVKE 109 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~-g~~vViGTTG~~~e~ 109 (280)
+|....+.++....+ +...++-=+|=++..
T Consensus 75 Pv~~~~~vl~~l~~~l~~~~ivTDvgSvK~~ 105 (307)
T PRK07502 75 PVGASGAVAAEIAPHLKPGAIVTDVGSVKAS 105 (307)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf 8999999999998555899689966321189
No 95
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.14 E-value=0.0023 Score=43.24 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=63.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC---------CHHHCCCHHHH----------CCCCCCCCCC-----
Q ss_conf 37999899877999999998389978999996489---------80204553666----------0875467545-----
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG---------SPLIGQDVGNF----------VGISPMGIKF----- 61 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~---------~~~~g~d~~~~----------~~~~~~~v~i----- 61 (280)
-||.|+|+|-+|..++..+... ++-=..++|++. .-+...|++.. +..-...+.+
T Consensus 25 a~VlVvGaGGLGs~~a~~La~a-GVG~i~ivD~D~Ve~SNL~RQ~L~~e~Dig~~~pKa~aA~~~L~~iNp~v~I~~~~~ 103 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSEVRVEAIVQ 103 (339)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 9789987777779999999984-898299980999246678865065621332263779999999983499860587600
Q ss_pred ---CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf ---568578521355047631-01024788876432372157650-2223
Q gi|254780279|r 62 ---SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 ---~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
.++++++++.+|+|||.| +.+.-+-.-+.|.++++|+|.|. .||.
T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~PlV~ga~~g~~ 153 (339)
T PRK07688 104 DVTAEELEELVTNVDVIIDATDNFETRFIVNDAAQKYSIPWIYGACVGSY 153 (339)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCE
T ss_conf 39989999998518899987889999999999999959998999884468
No 96
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.13 E-value=0.0016 Score=44.27 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=49.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CCCH
Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521355047631-0102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P~~ 83 (280)
.-||.|+|+|.||+.+++.+.+. +..=+.++.|+..+ .+.+.+..+.......-.+++.+.+.++|+||-.| .|..
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~-g~~~i~v~nRt~~k--a~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~aT~s~~~ 88 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSK-GAKKITIANRTLEK--AKELAEEFGGEEVEALPLDELEELLAEADIVISATSAPTP 88 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEEECCCCCC
T ss_conf 89899999609999999999975-99889995475789--9999998499725898513544136319999992599973
Q ss_pred HH
Q ss_conf 47
Q gi|254780279|r 84 TL 85 (280)
Q Consensus 84 ~~ 85 (280)
+.
T Consensus 89 ii 90 (134)
T pfam01488 89 II 90 (134)
T ss_pred EE
T ss_conf 64
No 97
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.11 E-value=0.0028 Score=42.55 Aligned_cols=99 Identities=19% Similarity=0.204 Sum_probs=59.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH----C-CC------CCCCCCCC
Q ss_conf 79998998779999999983899789999964898-------------0204553666----0-87------54675455
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF----V-GI------SPMGIKFS 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~----~-~~------~~~~v~i~ 62 (280)
||.|+|+|.+|..+++.+....- .=...+|.+.- ..+|+.-.+. + .. ......+.
T Consensus 1 kVlivG~GglG~~va~~L~~~Gv-~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99999979899999999999379-71999978987500146422589889492248999999985689838999945689
Q ss_pred -CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC-CCC
Q ss_conf -68578521355047631-010247888764323721576502-223
Q gi|254780279|r 63 -DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT-GFS 106 (280)
Q Consensus 63 -~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT-G~~ 106 (280)
++.++.++++|+|||.+ ++.......++|.++++|+|.|-+ ||.
T Consensus 80 ~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~ip~i~~~~~g~~ 126 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLG 126 (143)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf 64699997599999987799999999999999869988996366768
No 98
>PRK05442 malate dehydrogenase; Provisional
Probab=97.11 E-value=0.0091 Score=39.10 Aligned_cols=74 Identities=22% Similarity=0.427 Sum_probs=45.2
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHH------CCCCEEEEEEECCCCH--HHC--CCHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 9988737999899-8779999999983------8997899999648980--204--553666087546754556857852
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHN------NPSITLHSIIVRSGSP--LIG--QDVGNFVGISPMGIKFSDNLAMAI 69 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~------~~~~eLv~~i~~~~~~--~~g--~d~~~~~~~~~~~v~i~~dl~~~~ 69 (280)
|+ +||||+|+|| |..|+.++-.+.+ +..++|+ .+|..... ..| .|+.....-.-.++.++++..+++
T Consensus 1 m~-~p~kV~I~GAaG~ig~~l~~~la~g~l~g~~~~v~l~-L~Di~~~~~~l~G~ameL~d~a~p~l~~v~~~~~~~~a~ 78 (325)
T PRK05442 1 MK-APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQ-LLEIPQAQKALKGVVMELEDCAFPLLAGVVITDDPKVAF 78 (325)
T ss_pred CC-CCEEEEEECCCCHHHHHHHHHHHCHHHCCCCCCEEEE-EECCCCCCCCCCEEEEEHHCCCCCCCCCEEEECCHHHHH
T ss_conf 99-9729999888868889999998661320899846999-965777666556677342116754448768508878983
Q ss_pred CCCCEEE
Q ss_conf 1355047
Q gi|254780279|r 70 QSVDGII 76 (280)
Q Consensus 70 ~~~DViI 76 (280)
+++||||
T Consensus 79 ~~aDvvi 85 (325)
T PRK05442 79 KDADVAL 85 (325)
T ss_pred CCCCEEE
T ss_conf 7998899
No 99
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.10 E-value=0.0069 Score=39.90 Aligned_cols=75 Identities=20% Similarity=0.369 Sum_probs=45.0
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
|||+|+|. |+|||-.++... ..++++. +..|+.. .++++.. ..|+.+..+..+++..+|+||=..+...+
T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~-~sGyeV~-I~gRd~~--k~~~va~-----~LGv~~~~~~~e~~~~advVIvsVPI~~T 71 (441)
T PRK08655 1 MKISIIGGTGGLGKWFARFLK-DKGYEVI-VWGRDPK--KGKEVAK-----ELGVEYASDNIDAAKDGDIVIVSVPINVT 71 (441)
T ss_pred CEEEEEECCCHHHHHHHHHHH-HCCCEEE-EEECCCC--HHHHHHH-----HHCCCCCCCHHHHHHCCCEEEEECCHHHH
T ss_conf 979999479817799999998-6798899-9815731--3567888-----73862224478897249999998488999
Q ss_pred HHHHH
Q ss_conf 78887
Q gi|254780279|r 85 LQSLN 89 (280)
Q Consensus 85 ~~~~~ 89 (280)
.+.++
T Consensus 72 ~~VI~ 76 (441)
T PRK08655 72 EDVIR 76 (441)
T ss_pred HHHHH
T ss_conf 99999
No 100
>PRK07411 hypothetical protein; Validated
Probab=97.10 E-value=0.0029 Score=42.49 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=62.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----------CCCCCCCCCC-
Q ss_conf 79998998779999999983899789999964898-------------0204553666-----------0875467545-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----------VGISPMGIKF- 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----------~~~~~~~v~i- 61 (280)
||.|+|+|-+|.-++..++. .++--.+++|.+.- ..+|+.-.+. +.+......+
T Consensus 40 ~VlvvG~GGLG~p~~~yLaa-aGvG~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~~~~~~l~ 118 (390)
T PRK07411 40 SVLCIGTGGLGSPLLLYLAA-AGIGRIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLS 118 (390)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHCC
T ss_conf 78998887237999999998-38975999748994623478543666200797189999999998689864210343255
Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf 568578521355047631-01024788876432372157650-2223
Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
.++..+++...|||||.| ++..-+-.-+.|.++++|+|.|+ .||.
T Consensus 119 ~~na~~li~~~DvvvD~tDNf~tRylindac~~~~~PlV~ga~~~~~ 165 (390)
T PRK07411 119 SENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFE 165 (390)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCE
T ss_conf 52488742288689967888899999899999969987997647778
No 101
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=97.08 E-value=0.0031 Score=42.33 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=61.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH----CCCCCCCC-------CC-
Q ss_conf 79998998779999999983899789999964898-------------0204553666----08754675-------45-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF----VGISPMGI-------KF- 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~----~~~~~~~v-------~i- 61 (280)
||.|+|+|-+|..++..++. .++--.+++|.+.- ..+|+.-.+. +..-...+ .+
T Consensus 44 ~VlvvG~GGLG~~~~~yLaa-aGvG~i~ivD~D~v~~sNL~RQil~~~~dvG~~K~~~a~~~l~~~Np~v~v~~~~~~l~ 122 (392)
T PRK07878 44 RVLVIGAGGLGSPTLLYLAA-AGVGTIGIVEFDVVDESNLQRQIIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLE 122 (392)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCCC
T ss_conf 78998787578999999998-28975999878996745577200568433587079999999998789853121131378
Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC-CCC
Q ss_conf 568578521355047631-010247888764323721576502-223
Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT-GFS 106 (280)
Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT-G~~ 106 (280)
.++..++++..|+|||.| ++..-+-.-+.|.++++|+|.|.- ||.
T Consensus 123 ~~n~~~li~~~DvViD~tDN~~tR~lindac~~~~~PlV~ga~~~~~ 169 (392)
T PRK07878 123 PSNAVDLFAQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFE 169 (392)
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCE
T ss_conf 88987643177689866899899999999999969987997605758
No 102
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.07 E-value=0.0031 Score=42.31 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=60.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-------------HHCCCHHHH-----------CCCCCCCCCCC
Q ss_conf 799989987799999999838997899999648980-------------204553666-----------08754675455
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-------------LIGQDVGNF-----------VGISPMGIKFS 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-------------~~g~d~~~~-----------~~~~~~~v~i~ 62 (280)
+|.|+|+|-.|..++..++.. ++-=...+|.+.-. .+|+.-.+. +.+......++
T Consensus 34 ~VlivG~GGlG~~~~~~La~a-Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~~~i~ 112 (245)
T PRK05690 34 RVLVVGLGGLGCAAAQYLAAA-GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETINARLD 112 (245)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHCCC
T ss_conf 789987777789999999985-9965999968867888678886459877898879999999997588752263331448
Q ss_pred -CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf -68578521355047631-010247888764323721576502
Q gi|254780279|r 63 -DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 63 -~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT 103 (280)
+++.+.++.+|+|||.| ++..-...-+.|.++++|+|.|.-
T Consensus 113 ~~n~~~li~~~DlViD~~Dn~~~R~~ln~~c~~~~~P~v~g~~ 155 (245)
T PRK05690 113 DDELAALIAAHDLVLDCTDNVATRNQLNAACFAAKKPLVSGAA 155 (245)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8899887507888998789999999999999971998798778
No 103
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.06 E-value=0.004 Score=41.52 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=63.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-------------HHCCCHHHH-----CCCCC-CC-----CCC-
Q ss_conf 799989987799999999838997899999648980-------------204553666-----08754-67-----545-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-------------LIGQDVGNF-----VGISP-MG-----IKF- 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-------------~~g~d~~~~-----~~~~~-~~-----v~i- 61 (280)
||.|+|+|-+|..++..++. .++--.+++|.+.-. .+|+.-.+. ..+.+ .. ..+
T Consensus 30 ~VlvvG~GGLG~~~~~yLa~-aGvG~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~~~~~~l~ 108 (355)
T PRK05597 30 KVSVIGAGGLGSPALLYLAG-AGVGHITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVTVSVRRLD 108 (355)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHCC
T ss_conf 68998777668999999998-49975999729992612133775654121797979999999998789974275332157
Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf 568578521355047631-01024788876432372157650-2223
Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
.++..+++...|+|||.| ++..-+-.-..|.++++|+|.|+ .||.
T Consensus 109 ~~na~~li~~~DvVvD~tDn~~tR~lind~c~~~~~PlV~ga~~~~~ 155 (355)
T PRK05597 109 WSNALSELADADVILDGSDNFDTRHVASWAAARLGIPHVWASILGFD 155 (355)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCE
T ss_conf 77899775288789876788889999999999869987996524467
No 104
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.06 E-value=0.0061 Score=40.26 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=51.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---------CCCHHHHCCCCC----------CCCCC---CC
Q ss_conf 379998998779999999983899789999964898020---------455366608754----------67545---56
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI---------GQDVGNFVGISP----------MGIKF---SD 63 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~---------g~d~~~~~~~~~----------~~v~i---~~ 63 (280)
|||+++|-|+||..++..+.+ .++++. +++|+..+.. ..++.++...-+ .+-.+ .+
T Consensus 1 MkIGfIGLG~MG~~mA~nL~~-~G~~V~-v~dr~~~~~~~~~~~ga~~~~s~~e~~~~~d~prvI~l~lp~~~~Vd~Vi~ 78 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLR-GGHEVV-GYDRNPEAVEALAAEGATGAASLEELVAKLPAPRVVWLMVPAGEITDSTID 78 (301)
T ss_pred CEEEEECHHHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHHHHCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH
T ss_conf 979998345879999999996-899079-976999999999985994329999999707888779998179703899999
Q ss_pred CHHHHHCCCCEEEEEE--CCCHHHHHHHHHHHCCCEEE
Q ss_conf 8578521355047631--01024788876432372157
Q gi|254780279|r 64 NLAMAIQSVDGIIDFS--SPALTLQSLNISAQHNIVHI 99 (280)
Q Consensus 64 dl~~~~~~~DViIDFT--~P~~~~~~~~~a~~~g~~vV 99 (280)
.+...+++-|+|||.| .|..+....+.+.+.|+.++
T Consensus 79 ~l~~~l~~g~iiID~sts~~~~t~~~a~~l~~~gi~fl 116 (301)
T PRK09599 79 ELAPLLEAGDIVIDGGNSYYKDDIRRAELLAEKGIHFV 116 (301)
T ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 99962789988870899983889999999998599454
No 105
>PRK08328 hypothetical protein; Provisional
Probab=97.05 E-value=0.0029 Score=42.48 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=60.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC-----C--------CHHHCCC-HHH-----HCCCCC-CCC-----CC
Q ss_conf 799989987799999999838997899999648-----9--------8020455-366-----608754-675-----45
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRS-----G--------SPLIGQD-VGN-----FVGISP-MGI-----KF 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~-----~--------~~~~g~d-~~~-----~~~~~~-~~v-----~i 61 (280)
||.|+|+|-.|..++..++.. ++--...+|.+ + ...+|+. ... ...+.+ ..+ .+
T Consensus 29 ~VlvvG~GGlGs~~~~~La~~-GvG~i~lvD~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~~~~i 107 (230)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAA-GVGTVLLIDEQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETFVGRL 107 (230)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHHH
T ss_conf 789988787899999999984-8986898748787515632554030877477103999999999759950575266442
Q ss_pred -CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf -568578521355047631-01024788876432372157650-2223
Q gi|254780279|r 62 -SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 -~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
..++.+.++.+|+|||.| +++.-+-.-++|.++++|+|.|. .||.
T Consensus 108 ~~~n~~~ll~~~DlViD~tDn~~tr~~ln~~c~~~~iPlI~g~v~g~~ 155 (230)
T PRK08328 108 TEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGMY 155 (230)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCE
T ss_conf 377798620059899998899899999999999839977999966179
No 106
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.05 E-value=0.0051 Score=40.84 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=54.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC------CCHHHHCC---CC-------CCCCCCCCCHHHHHC
Q ss_conf 799989987799999999838997899999648980204------55366608---75-------467545568578521
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG------QDVGNFVG---IS-------PMGIKFSDNLAMAIQ 70 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g------~d~~~~~~---~~-------~~~v~i~~dl~~~~~ 70 (280)
||+|+|+|.||+.++...+ ..+++++ .+|++...... +.+..... .. ...+..++|++ .+.
T Consensus 5 ~VaViGaG~mG~~IA~~~a-~~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~-~~~ 81 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCA-VAGYDVV-MVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLK 81 (282)
T ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH-HHC
T ss_conf 8999897889999999999-5799389-997998999999999999999999708864266999995263668888-967
Q ss_pred CCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 355047631010-----2478887643237215765022231358
Q gi|254780279|r 71 SVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280)
Q Consensus 71 ~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280)
++|+||+....+ .++.-++........+.+-|++++-.++
T Consensus 82 ~aDlViEav~E~l~iK~~vf~~le~~~~~~~IlaSnTSsl~is~l 126 (282)
T PRK05808 82 DADLVIEAAVENMDIKKKIFAQLDEIAKPEAILATNTSSLSITEL 126 (282)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf 599999877563455699999999557998489975887766999
No 107
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=97.03 E-value=0.0035 Score=41.89 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=61.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-------------HHCCCHHHH-----CCCCC-CC-----CCC
Q ss_conf 3799989987799999999838997899999648980-------------204553666-----08754-67-----545
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-------------LIGQDVGNF-----VGISP-MG-----IKF 61 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-------------~~g~d~~~~-----~~~~~-~~-----v~i 61 (280)
-||.|+|+|-.|..+++.+... ++-=...+|.+.-. .+|+.-.+. ....+ .. ..+
T Consensus 22 s~VlvvG~GGLG~~v~~~La~a-Gvg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred CCEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9599988788999999999983-798699998991877773978603233478885999999999738997289870458
Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCCH
Q ss_conf 568578521355047631-01024788876432372157650-22231
Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFSV 107 (280)
Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~~ 107 (280)
+....+.+..+|+|||.+ +.+..+..-++|.++++|+|.|. .||.-
T Consensus 101 ~~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~~~~iplI~g~~~g~~G 148 (197)
T cd01492 101 SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFG 148 (197)
T ss_pred CHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCEE
T ss_conf 576899982899999999999999999999998199789998137552
No 108
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.02 E-value=0.012 Score=38.36 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=41.8
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 37999899-877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
.||+|+|+ |+.|..++-.+..++-..=...+|..+.+-...|+..............++..+.++.+|+||
T Consensus 2 ~KV~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~~a~g~a~Dl~~~~~~~~~~~~~~~~~~e~~~~aDIVV 73 (313)
T PTZ00325 2 FKVAVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIVGAPGVAADLSHIPSPAKVTGYAKGELHKAVDGADVVL 73 (313)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEECCCCHHHHHCCCCEEE
T ss_conf 389998999869999999998389977799980897266898886755535665452798889848998999
No 109
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.02 E-value=0.0088 Score=39.21 Aligned_cols=122 Identities=13% Similarity=0.205 Sum_probs=67.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH----------HCCCHHHHCC--CCCCCCCCCCCHHHHHCCCC
Q ss_conf 37999899877999999998389978999996489802----------0455366608--75467545568578521355
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL----------IGQDVGNFVG--ISPMGIKFSDNLAMAIQSVD 73 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~----------~g~d~~~~~~--~~~~~v~i~~dl~~~~~~~D 73 (280)
|||+|+|.|.+|-..+-.. .+.+++++| +|.+..+. ....+.+... .....+..++|+++++.++|
T Consensus 1 MkI~ViGlGyVGl~~a~~l-A~~G~~V~g-~D~d~~~i~~l~~g~~p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~~~d 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALL-ADLGHEVTG-VDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCHHHHHHHHHH-HHCCCCEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHCC
T ss_conf 9799989787799999999-948994899-98999999999779899789898999999986399799878899872099
Q ss_pred EEEEEE-CCC-----HHHHHHH-------HHHHCCCEEEEEEC---CCCHHHH-HHHHHHHC-----CCCCEECCCHH
Q ss_conf 047631-010-----2478887-------64323721576502---2231358-99987403-----55521000011
Q gi|254780279|r 74 GIIDFS-SPA-----LTLQSLN-------ISAQHNIVHIIGTT---GFSVKEN-EVISSFAR-----NAPIVKSSNMS 129 (280)
Q Consensus 74 ViIDFT-~P~-----~~~~~~~-------~a~~~g~~vViGTT---G~~~e~~-~~l~~~s~-----~~~il~apN~S 129 (280)
+++=+- +|. .-..+++ ..++.+.-+|+-|| |.+++-. ..+++.+. ..-+.++|-|-
T Consensus 79 ii~I~V~TP~~~~g~~d~s~l~~a~~~i~~~l~~~~lvii~STV~pGTt~~i~~~ile~~~~~~~g~df~v~~~PEfl 156 (411)
T TIGR03026 79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL 156 (411)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 999976898666887213899999999997668999899957868681048999988774046668854799683546
No 110
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.00 E-value=0.0027 Score=42.75 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=61.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH---------HHCCCHHH---------------HCCCCCCCCCC-
Q ss_conf 799989987799999999838997899999648980---------20455366---------------60875467545-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP---------LIGQDVGN---------------FVGISPMGIKF- 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~---------~~g~d~~~---------------~~~~~~~~v~i- 61 (280)
||.|+|+|-+|..++..++.. ++--..++|.+.-. +...|+|. .+.+......+
T Consensus 140 ~VlivG~GGLGs~~a~yLA~a-GVG~i~lvD~D~Ve~SNL~RQil~~~~diG~~Ka~~a~~~L~~~Np~i~i~~~~~~l~ 218 (379)
T PRK08762 140 RVLLIGAGGLGSPAAFYLAAA-GVGHLRIADHDVVDRSNLQRQILHTEDSVGQPKVDSAAQRIAALNPRVQVEAVQTRVT 218 (379)
T ss_pred CEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEHHCCC
T ss_conf 789988875579999999983-7975897628861334501125746433555589999999998689973385021089
Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf 568578521355047631-01024788876432372157650-2223
Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
.+++.+++..+|+|||.| +...-+-.-+.|.++++|+|.|. .||.
T Consensus 219 ~~n~~~li~~~DlViDctDN~~tR~liN~~c~~~~~PlV~ga~~g~~ 265 (379)
T PRK08762 219 SSNVEALLQDVDVVVDGADNFPARYLLNDACVKLGKPLVYGAVQRFE 265 (379)
T ss_pred HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCE
T ss_conf 89999998628899986887788999999999979997999884469
No 111
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=97.00 E-value=0.004 Score=41.55 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=62.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHH----H-CCCCC-CCC-----CC-
Q ss_conf 79998998779999999983899789999964898-------------020455366----6-08754-675-----45-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGN----F-VGISP-MGI-----KF- 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~----~-~~~~~-~~v-----~i- 61 (280)
||.|+|+|-+|..++..++. .++-=.+++|.+.- ..+|+.-.+ . ..+.+ ..+ .+
T Consensus 43 ~VlvvG~GGLG~p~~~yLaa-aGvG~i~ivD~D~Ve~sNL~RQil~~~~diG~~K~~~A~~~l~~lNp~i~i~~~~~~l~ 121 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLAS-AGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLT 121 (370)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHCC
T ss_conf 78998887578999999998-28974898738982602105554269766697579999999998789971573566469
Q ss_pred CCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf 568578521355047631-01024788876432372157650-2223
Q gi|254780279|r 62 SDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 ~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
.++..++++..|||||.| +...-+-.-..|.+.++|+|.|+ .||.
T Consensus 122 ~~n~~~li~~~DvVvD~tDNf~tRylindaC~~~~~PlV~ga~~~~e 168 (370)
T PRK05600 122 AENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFH 168 (370)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCE
T ss_conf 99999876368789977888799999999999849976984532628
No 112
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=96.97 E-value=0.0084 Score=39.33 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=127.2
Q ss_pred EEEEEECCCHHHHHHHHHHHH--C--------------------CCCEEEEEEECCCCHHHCCCHHHHCCCCCC------
Q ss_conf 379998998779999999983--8--------------------997899999648980204553666087546------
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHN--N--------------------PSITLHSIIVRSGSPLIGQDVGNFVGISPM------ 57 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~--~--------------------~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~------ 57 (280)
|||+|+|-|...+.+++-+.. + .|+|+|+++|-+..+ +|+|+.+.+...++
T Consensus 1 IrVaIvGvGncASslvqGieyyk~~~~~~~v~Glm~~~iggy~v~DIeiVaafDVD~~K-VGkdlseAi~~~pN~~~~~~ 79 (351)
T TIGR03450 1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKK-VGFDLSDAIFASENNTIKIA 79 (351)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-CCCCHHHHHHCCCCCCCCCC
T ss_conf 95999913078999999999996389645667730022478674446999997327040-47769999740689864217
Q ss_pred -----CCCCC-----------------C------CHHHHHC--CCCEEEEEE---CCCHHHHHHHHHHHCCCEEEEEECC
Q ss_conf -----75455-----------------6------8578521--355047631---0102478887643237215765022
Q gi|254780279|r 58 -----GIKFS-----------------D------NLAMAIQ--SVDGIIDFS---SPALTLQSLNISAQHNIVHIIGTTG 104 (280)
Q Consensus 58 -----~v~i~-----------------~------dl~~~~~--~~DViIDFT---~P~~~~~~~~~a~~~g~~vViGTTG 104 (280)
++.+. . |.-..++ ++||+|-|- +-+++.-+++.|+++|+.+|=|+--
T Consensus 80 dvp~~gv~V~~G~~lDG~~~~~~~~i~~~~~~~~Dvv~~lk~~~~dVlvnylPvGse~At~~YA~~aL~AG~aFVN~iP~ 159 (351)
T TIGR03450 80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPV 159 (351)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCH
T ss_conf 88887988855687565344555056665335366999998628746897157686699999999889849817833541
Q ss_pred CCHHHHHHHHHHH-CCCCCEECC-CHHHHHHHHHHHHHHHHH----------HHCCCCCCH-HHHHHHHHHCCCCCCCHH
Q ss_conf 2313589998740-355521000-011568999999999998----------611566600-899998641678998678
Q gi|254780279|r 105 FSVKENEVISSFA-RNAPIVKSS-NMSLGINFLGFLVETAAE----------YLLPAKDWD-FEILEMHHRRKLDSPSGT 171 (280)
Q Consensus 105 ~~~e~~~~l~~~s-~~~~il~ap-N~SiGv~ll~~l~~~~a~----------~l~~~~~~d-ieI~E~HH~~K~DaPSGT 171 (280)
|-..+-+-.+.+. +..||+--- --.+|..++-+.+..+-+ .|+.+.+.| .-..|.-....|-. |=|
T Consensus 160 fIAsdp~~~~~F~e~glpi~GDDiksq~GATi~hr~La~L~~~Rgv~v~~tyQlNiGGNtDFlnm~e~~Rl~sKk~-SKt 238 (351)
T TIGR03450 160 FIASDPEWAKKFTDAGVPIVGDDIKSQVGATITHRVLAKLFEDRGVRLDRTMQLNVGGNMDFKNMLERDRLESKKI-SKT 238 (351)
T ss_pred HCCCCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHCCHHHHHHCCC-HHH
T ss_conf 0158989999999879978725301135616479999999997597565899973046506666454113432100-288
Q ss_pred HHHHHHHHHHHC-CCCCCCCC-CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCHHHHHH---
Q ss_conf 999999998532-88764221-1123576765433456501375288205799998189958999999727376799---
Q gi|254780279|r 172 ALLLGEAIANGR-KVNLTDHM-VLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFAR--- 246 (280)
Q Consensus 172 A~~la~~i~~~~-~~~~~~~~-~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~~Fa~--- 246 (280)
..- .... +..+.+.. .-+..+......++ .+..+|.-+ ..|++---.|+++-+..|----|.
T Consensus 239 ~aV-----~s~l~~~~l~~~~i~igPSdYv~~L~D~--K~~~i~iEg------~~Fgg~p~~le~~l~V~DSPnsAGvvI 305 (351)
T TIGR03450 239 QAV-----TSNLPDRPLKDKNVHIGPSDHVGWLDDR--KWAYVRLEG------RAFGDVPLNLEYKLEVWDSPNSAGVII 305 (351)
T ss_pred HHH-----HHHCCCCCCCCCCEEECCCCCCCCCCCC--EEEEEEEEE------EECCCCCEEEEEEEEEECCCHHHHHHH
T ss_conf 999-----9751566577786578964567747893--599999986------764897679999999732714677899
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999998348
Q gi|254780279|r 247 GSLTAALWAKSQ 258 (280)
Q Consensus 247 Gal~aa~~l~~~ 258 (280)
-++++++-..++
T Consensus 306 DaiR~~KlA~dr 317 (351)
T TIGR03450 306 DAVRAAKIAKDR 317 (351)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999866
No 113
>PRK07660 consensus
Probab=96.94 E-value=0.0081 Score=39.45 Aligned_cols=102 Identities=16% Similarity=0.236 Sum_probs=55.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CCCHHHHCC---CC-------CCCCCCCCCHHHHHC
Q ss_conf 79998998779999999983899789999964898020------455366608---75-------467545568578521
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQDVGNFVG---IS-------PMGIKFSDNLAMAIQ 70 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~d~~~~~~---~~-------~~~v~i~~dl~~~~~ 70 (280)
||+|+|+|.||+.++...+ ..+++++ .+|++..... .+.+..... .. -..+..++|++ .+.
T Consensus 5 ~VaViGaG~MG~gIA~~~a-~~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 81 (283)
T PRK07660 5 KIVVIGAGQMGSGIAQVCA-MAGYDVK-VQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLDLD-CVK 81 (283)
T ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHH-HHC
T ss_conf 8999896989999999999-6698189-997988999999999999999998705899899999983587768989-976
Q ss_pred CCCEEEEEECC-----CHHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 35504763101-----024788876432372157650222313589
Q gi|254780279|r 71 SVDGIIDFSSP-----ALTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280)
Q Consensus 71 ~~DViIDFT~P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280)
++|+||+.-.. ..++.-++........+.+-|++++-.++.
T Consensus 82 ~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~~ia 127 (283)
T PRK07660 82 EADLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSSLPITEIA 127 (283)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHH
T ss_conf 8999998785754442999999996479971898658888732556
No 114
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.93 E-value=0.0067 Score=40.02 Aligned_cols=105 Identities=11% Similarity=0.205 Sum_probs=61.6
Q ss_pred CE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH------HCCCHHHH--CCC----CCCCCCCCCCHHHHHCC
Q ss_conf 73-7999899877999999998389978999996489802------04553666--087----54675455685785213
Q gi|254780279|r 5 PM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL------IGQDVGNF--VGI----SPMGIKFSDNLAMAIQS 71 (280)
Q Consensus 5 ~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~------~g~d~~~~--~~~----~~~~v~i~~dl~~~~~~ 71 (280)
.| +|+|+|+|-||+.++..... .+++++ .+|+.+... +.+..... .+. ....+.+.+++++++.+
T Consensus 6 ~Ik~VaVIGaG~MG~giAa~~a~-~G~~V~-l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~ 83 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALA-HGLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCC
T ss_conf 78879998887888999999994-798599-9969888999999999999999986689963169650146888998635
Q ss_pred CCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 55047631010-----24788876432372157650222313589
Q gi|254780279|r 72 VDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280)
Q Consensus 72 ~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280)
+|.||+...-. .++.-++........+-+-|+|++..++.
T Consensus 84 aD~ViEavpE~l~lK~~lf~~ld~~~~~~aIiASnTS~l~is~l~ 128 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFY 128 (321)
T ss_pred CCEEEECCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHH
T ss_conf 998998776659999999999997679886785257657899998
No 115
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.93 E-value=0.0097 Score=38.91 Aligned_cols=134 Identities=22% Similarity=0.190 Sum_probs=80.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 37999899877999999998389978999996489802-04553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-IGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
=+|+|+|+|-+|.+.++..... ..+++++ ++++.+. ..+.++....+. -.-.+..+.+.+.+|++||+..+...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~-ga~Via~-~~~~~K~e~a~~lGAd~~i~---~~~~~~~~~~~~~~d~ii~tv~~~~~ 242 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAM-GAEVIAI-TRSEEKLELAKKLGADHVIN---SSDSDALEAVKEIADAIIDTVGPATL 242 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEE-ECCHHHHHHHHHHCCCEEEE---CCCCHHHHHHHHHCCEEEECCCHHHH
T ss_conf 8999987748999999999986-9969999-57877999999848828997---67811667767347399998774559
Q ss_pred HHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 78887643237215765022231-358999874035552100001156899999999999861
Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTGFSV-KENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYL 146 (280)
Q Consensus 85 ~~~~~~a~~~g~~vViGTTG~~~-e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l 146 (280)
...++.....|.-+++|--+..+ ..+....-..+.+.|.-+...+ .+=+..+++.+++-.
T Consensus 243 ~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~--~~d~~e~l~f~~~g~ 303 (339)
T COG1064 243 EPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT--RADLEEALDFAAEGK 303 (339)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHCCCEEEEEECCC--HHHHHHHHHHHHHCC
T ss_conf 9999986429789997888876666678778632670899972489--999999999998189
No 116
>PRK09117 consensus
Probab=96.92 E-value=0.0063 Score=40.18 Aligned_cols=98 Identities=15% Similarity=0.292 Sum_probs=50.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC------CCHHHHCC---C-------CCCCCCCCCCHHHHHC
Q ss_conf 799989987799999999838997899999648980204------55366608---7-------5467545568578521
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG------QDVGNFVG---I-------SPMGIKFSDNLAMAIQ 70 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g------~d~~~~~~---~-------~~~~v~i~~dl~~~~~ 70 (280)
||+|+|+|.||+.++...+ ..+++++ .+|++...... ..+..... . ....+..++|++ .+.
T Consensus 4 ~VaViGaG~mG~~iA~~~a-~~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~~-a~~ 80 (282)
T PRK09117 4 TVGIIGAGTMGNGIAQACA-VAGLDVV-MVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDYD-ALK 80 (282)
T ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHH-HHC
T ss_conf 7999897799999999999-6799689-998988999999999999999999706887788999984065679989-975
Q ss_pred CCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 355047631010-----2478887643237215765022231
Q gi|254780279|r 71 SVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSV 107 (280)
Q Consensus 71 ~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280)
++|+||+.-..+ .++.-++.....+..+.+-|++++-
T Consensus 81 ~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i 122 (282)
T PRK09117 81 DADLVIEAATENLDLKLKILKQLDALVGPDAIIATNTSSISI 122 (282)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 599999878588888899999998657998189865876761
No 117
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.91 E-value=0.0038 Score=41.71 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=44.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC--CCC--CCCCCCHHHHHCCCCEEE
Q ss_conf 37999899877999999998389978999996489802045536660875--467--545568578521355047
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS--PMG--IKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~--~~~--v~i~~dl~~~~~~~DViI 76 (280)
|||+|+|+|+.|..++-.+...+-..=...+|.++.+..|.-..-.-+.. ... +....|.+ .+.++|+||
T Consensus 1 mKI~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~-~~~daDiVV 74 (312)
T PRK06223 1 MKISIIGAGNVGATLAHLLALKELGKDVVLFDIPEGIPQGKALDIAESSAVDGFDAKITGTNDYA-DIAGSDVVI 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHH-HHCCCCEEE
T ss_conf 97999996989999999998579987489976999733679888765143368884798378889-957999999
No 118
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.90 E-value=0.0067 Score=40.02 Aligned_cols=126 Identities=15% Similarity=0.210 Sum_probs=61.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CC-CCCCCCHHHH-HCCCCEEEEEECCC
Q ss_conf 379998998779999999983899789999964898020455366608754-67-5455685785-21355047631010
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MG-IKFSDNLAMA-IQSVDGIIDFSSPA 82 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~-v~i~~dl~~~-~~~~DViIDFT~P~ 82 (280)
|||.|+|+|++|+.+++.+.. .+.+++ ++|++.... ..+........ .| ..-.+.++++ ++++|++|-.|.-+
T Consensus 1 M~IiI~GaG~vG~~La~~Ls~-e~~dV~-vID~d~~~~--~~~~~~lDv~~i~Gd~~~~~~L~~Agi~~ad~~IAvT~~D 76 (455)
T PRK09496 1 MKIIILGAGQVGGTLAERLVG-ENNDVT-VIDTDEERL--RRLQDRLDVRTVVGNGSHPDVLREAGAEDADMLIAVTDSD 76 (455)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHH--HHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCCH
T ss_conf 979999988899999999986-899799-998999999--9988625868999668999999965998699999957971
Q ss_pred HHHH-HHHHHHH-CCCEEEEEECCCCHHHHHHHHHH--HC--CCCCEECCCHHHHHHHHH
Q ss_conf 2478-8876432-37215765022231358999874--03--555210000115689999
Q gi|254780279|r 83 LTLQ-SLNISAQ-HNIVHIIGTTGFSVKENEVISSF--AR--NAPIVKSSNMSLGINFLG 136 (280)
Q Consensus 83 ~~~~-~~~~a~~-~g~~vViGTTG~~~e~~~~l~~~--s~--~~~il~apN~SiGv~ll~ 136 (280)
.+.- ....|.+ +|.+-+|+-.- +++.......+ .+ .+-.+.+|-...+-.+..
T Consensus 77 e~Nli~~~lAk~l~g~~~tIaRv~-n~ey~~~~~~~~~~~~lgid~iI~Pe~~~a~~I~~ 135 (455)
T PRK09496 77 ETNMVACQIAKSLFGTPTKIARIR-NPEYLREYPKLFNKEALGIDVLISPELLVAREIAR 135 (455)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHH
T ss_conf 899999999998669982499974-77764304442001147864898782999999999
No 119
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.89 E-value=0.012 Score=38.25 Aligned_cols=124 Identities=16% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHC------CCCEEEEEEECCCCH--HH--CCCHHHHCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 8737999899-87799999999838------997899999648980--20--4553666087546754556857852135
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNN------PSITLHSIIVRSGSP--LI--GQDVGNFVGISPMGIKFSDNLAMAIQSV 72 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~------~~~eLv~~i~~~~~~--~~--g~d~~~~~~~~~~~v~i~~dl~~~~~~~ 72 (280)
.||||+|+|| |..|+.++-.+.+. ...+| ..+|.+... .. ..|+.....--..++.++++..+.++++
T Consensus 1 ~p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l-~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~~~~~~~a~~~a 79 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVIL-QLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDA 79 (322)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEE-EEECCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHCCC
T ss_conf 970999989996899999999971113079972699-9975757566676577445326765458779748878983788
Q ss_pred CEEEEEE-CC-CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-CCCCCEECCCHHHHHHHHHHHH
Q ss_conf 5047631-01-024788876432372157650222313589998740-3555210000115689999999
Q gi|254780279|r 73 DGIIDFS-SP-ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFA-RNAPIVKSSNMSLGINFLGFLV 139 (280)
Q Consensus 73 DViIDFT-~P-~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s-~~~~il~apN~SiGv~ll~~l~ 139 (280)
||||=-. .| +..+.-...... +..+ -.+.-+.+.+.+ ..+-++.+.|- ++.+.-++
T Consensus 80 DvVvitaG~prkPG~tR~DLl~~-Na~I-------~~~~~~~i~~~a~p~~~vivvsNP---vd~~~~v~ 138 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKA-NGKI-------FTAQGKALNDVASRDVKVLVVGNP---CNTNALIA 138 (322)
T ss_pred CEEEEECCCCCCCCCCHHHHHHH-HHHH-------HHHHHHHHHHHCCCCCEEEEECCH---HHHHHHHH
T ss_conf 78999368789989818999998-6899-------999999999757988389995781---88899999
No 120
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.86 E-value=0.017 Score=37.26 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=30.0
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHH
Q ss_conf 37999899-877999999998389978999996489802045536
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVG 49 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~ 49 (280)
|||+|+|| |+.|..++-.+..++-..=...+|....+-...|+.
T Consensus 1 mKV~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~g~a~DL~ 45 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLS 45 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 989999999818999999997299977699982774266755321
No 121
>KOG2711 consensus
Probab=96.85 E-value=0.019 Score=36.89 Aligned_cols=129 Identities=19% Similarity=0.314 Sum_probs=78.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCC-----EEEEEEECCCCHHHC--CCHHHHCC-----------CC-CCCCCCCC
Q ss_conf 8873799989987799999999838997-----899999648980204--55366608-----------75-46754556
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSI-----TLHSIIVRSGSPLIG--QDVGNFVG-----------IS-PMGIKFSD 63 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~-----eLv~~i~~~~~~~~g--~d~~~~~~-----------~~-~~~v~i~~ 63 (280)
..|+||+++|+|+-|+++++.+.++-.- .-|..+.+.+ ...+ ..+-+.++ ++ +.++...+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee-~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEE-EINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 0753799981680899999998652540556673036777501-337705789987515563423367865997767652
Q ss_pred CHHHHHCCCCEEEEEECCCHHHH-H---HHHHHHCCCEEEEEECCCCHH--H--HHHHHHH---HCCCC--CEECCCHHH
Q ss_conf 85785213550476310102478-8---876432372157650222313--5--8999874---03555--210000115
Q gi|254780279|r 64 NLAMAIQSVDGIIDFSSPALTLQ-S---LNISAQHNIVHIIGTTGFSVK--E--NEVISSF---ARNAP--IVKSSNMSL 130 (280)
Q Consensus 64 dl~~~~~~~DViIDFT~P~~~~~-~---~~~a~~~g~~vViGTTG~~~e--~--~~~l~~~---s~~~~--il~apN~Si 130 (280)
|+.++..++|++| |-.|..... . +.-..+-+.+.|+.+-|+.-. . +..+.+. +-.+| +|..||+.-
T Consensus 98 dl~ea~~dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~ 176 (372)
T KOG2711 98 DLVEAAKDADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIAS 176 (372)
T ss_pred HHHHHHCCCCEEE-EECCHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCCCEEEHHHHHHHHHCCCCEEECCCCHHH
T ss_conf 3998843388899-948715479999998542579980788540414168888446369999998689703214774589
Q ss_pred HHH
Q ss_conf 689
Q gi|254780279|r 131 GIN 133 (280)
Q Consensus 131 Gv~ 133 (280)
-++
T Consensus 177 EVa 179 (372)
T KOG2711 177 EVA 179 (372)
T ss_pred HHH
T ss_conf 997
No 122
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=96.84 E-value=0.0079 Score=39.51 Aligned_cols=102 Identities=21% Similarity=0.321 Sum_probs=56.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH------HCCCHHHHCCCC----------CCCCCCCCCHHHHHC
Q ss_conf 7999899877999999998389978999996489802------045536660875----------467545568578521
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL------IGQDVGNFVGIS----------PMGIKFSDNLAMAIQ 70 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~------~g~d~~~~~~~~----------~~~v~i~~dl~~~~~ 70 (280)
||+|+|+|.||+.++...+. .+++++ .+|++.... +.+.+....... ...+.++++++.+ .
T Consensus 1 kV~ViGaG~mG~~iA~~~a~-~G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~-~ 77 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFAR-AGLEVV-LVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADA-V 77 (180)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHH-C
T ss_conf 98999978899999999996-799399-99799899999999999989999972567567699998524105889997-5
Q ss_pred CCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 355047631010-----24788876432372157650222313589
Q gi|254780279|r 71 SVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280)
Q Consensus 71 ~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280)
++|+||+.-.-+ .++.-++........+-+-|++++-.++.
T Consensus 78 ~adlViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~is~la 123 (180)
T pfam02737 78 DADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELA 123 (180)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCHHHHH
T ss_conf 8999999251768899999999997430330887526768999999
No 123
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.83 E-value=0.0047 Score=41.07 Aligned_cols=90 Identities=14% Similarity=0.241 Sum_probs=57.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CCCH
Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521355047631-0102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P~~ 83 (280)
.-||.|+|+|.||+.+++.+.+. +..=+.++.|+..+ .+.+....+. ...-.+++.+.+..+||||-.| .|..
T Consensus 182 ~~~vlviGaGem~~l~~k~L~~~-g~~~i~v~nRt~~r--a~~la~~~~~---~~~~~~~l~~~l~~~DvvisaT~s~~~ 255 (429)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK-GVRKITVANRTLER--AEELAEEFGA---EAIPLEELPEALAEADIVISSTAAPHP 255 (429)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHHHHHCCC---EEECHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 06599976748999999999855-99849997586778--9999997598---897499999999658999994489975
Q ss_pred H--HHHHHHHHHC--CCEEEE
Q ss_conf 4--7888764323--721576
Q gi|254780279|r 84 T--LQSLNISAQH--NIVHII 100 (280)
Q Consensus 84 ~--~~~~~~a~~~--g~~vVi 100 (280)
+ .+.++.+.+. ++|+++
T Consensus 256 ii~~~~~~~~~~~r~~~~~~i 276 (429)
T PRK00045 256 IITKGMVERALKQRRHRPLLL 276 (429)
T ss_pred CCCHHHHHHHHHHCCCCCEEE
T ss_conf 027999999987346995699
No 124
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=96.81 E-value=0.0047 Score=41.05 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=64.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC----CCHHHHHCCCCEEEEEE-C
Q ss_conf 379998998779999999983899789999964898020455366608754675455----68578521355047631-0
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS----DNLAMAIQSVDGIIDFS-S 80 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~----~dl~~~~~~~DViIDFT-~ 80 (280)
-|+.|+|||+||..+++.+.. .++.=+-++.|+-.+ .+++..-++- |..+... +++.+.+..+||||-.| .
T Consensus 186 ~~~LliGAGeMg~Lva~~L~~-~~v~~~~i~NRt~~r--A~~LA~e~~~-P~~~~f~~La~~~L~~~L~~~DivissTgA 261 (436)
T TIGR01035 186 KKVLLIGAGEMGELVAKHLRE-KGVGKVLIANRTYER--AEKLAKELGG-PEAVKFEALALEKLEEALAEADIVISSTGA 261 (436)
T ss_pred CEEEEEECCHHHHHHHHHHHH-CCCCEEEEECCCHHH--HHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 418998274579999999964-895289885567789--9999987078-664544455489999997428899985576
Q ss_pred CCHH--HHHHHHHHHCC------CEEEEEE
Q ss_conf 1024--78887643237------2157650
Q gi|254780279|r 81 PALT--LQSLNISAQHN------IVHIIGT 102 (280)
Q Consensus 81 P~~~--~~~~~~a~~~g------~~vViGT 102 (280)
|... .+.++.|.... -|+++.=
T Consensus 262 ~~pi~~~~~~e~a~~~Rr~de~~~pl~~~D 291 (436)
T TIGR01035 262 PEPIVSKEDVERALKERRRDEAARPLFIVD 291 (436)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 531002034899999722200158869997
No 125
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=96.81 E-value=0.0057 Score=40.47 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=70.9
Q ss_pred EEEEEECCC-HHHHHHHHHHHHCCCCEEEEEEECCCCHHHCC--CHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CC
Q ss_conf 379998998-77999999998389978999996489802045--536660875467545568578521355047631-01
Q gi|254780279|r 6 MRISVLGGG-RMGQALIKEIHNNPSITLHSIIVRSGSPLIGQ--DVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SP 81 (280)
Q Consensus 6 IkV~I~GaG-kMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~--d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P 81 (280)
|||+|+|+| +.|..++-.+...+-..=...+|..+....|. |+............+..+..+.+.++|+||=-. .|
T Consensus 1 mKV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVitaG~~ 80 (142)
T pfam00056 1 VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVITAGVP 80 (142)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEECCCC
T ss_conf 98999898778999999999747966347885057764117999986144347887697488388837899999815777
Q ss_pred C-HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 0-24788876432372157650222313589998740355521000011568999999999998
Q gi|254780279|r 82 A-LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAE 144 (280)
Q Consensus 82 ~-~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~ 144 (280)
. ........ ++.+.+++ .+-.+.|.+++.+.-++...|- +++|..++.+.+.
T Consensus 81 ~k~g~~R~dl-l~~Na~I~-------~~i~~~i~~~~p~~ivivvtNP---vDvmt~~~~~~sg 133 (142)
T pfam00056 81 RKPGMTRLDL-LNRNAGIF-------KDIVPAIAKSAPDAIVLVVSNP---VDILTYIAWKVSG 133 (142)
T ss_pred CCCCCCHHHH-HHHHHHHH-------HHHHHHHHHHCCCEEEEEECCC---HHHHHHHHHHHHC
T ss_conf 8999877899-99746999-------9999999976998199994594---6889999999978
No 126
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.78 E-value=0.011 Score=38.41 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=60.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC---------------HHHCCCHHHHC-----CCCC-CCCC-----
Q ss_conf 79998998779999999983899789999964898---------------02045536660-----8754-6754-----
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS---------------PLIGQDVGNFV-----GISP-MGIK----- 60 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~---------------~~~g~d~~~~~-----~~~~-~~v~----- 60 (280)
||.|+|+|-.|..+++.+.. .++-=..++|.+.- ..+|+.-.+.. ...+ ..+.
T Consensus 21 ~VlVvG~GGLG~~v~~~La~-aGVg~i~ivD~D~Ve~sNL~RQ~l~~~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~ 99 (198)
T cd01485 21 KVLIIGAGALGAEIAKNLVL-AGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 89998778899999999997-49986999959963533577575026541116872999999999977999779998224
Q ss_pred ---CCCCHHHHHCCCCEEEEEEC-CCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf ---55685785213550476310-1024788876432372157650-2223
Q gi|254780279|r 61 ---FSDNLAMAIQSVDGIIDFSS-PALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 61 ---i~~dl~~~~~~~DViIDFT~-P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
..++..+.++.+|+|||.+- .+.-...-+.|.++++|+|.|. .||.
T Consensus 100 ~~~~~~n~~~~~~~~DlVvd~~dn~~~r~~in~~c~~~~iPlI~ga~~G~~ 150 (198)
T cd01485 100 SLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLI 150 (198)
T ss_pred CCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCE
T ss_conf 457786899998489999999999999999999999929988999745668
No 127
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.77 E-value=0.014 Score=37.90 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=56.7
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC------CCHHHHCC---C-------CCCCCCCCCC
Q ss_conf 998873799989987799999999838997899999648980204------55366608---7-------5467545568
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG------QDVGNFVG---I-------SPMGIKFSDN 64 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g------~d~~~~~~---~-------~~~~v~i~~d 64 (280)
|++ -=||+|+|+|-||+.++...+ ..+++++ .+|++...... +.+..... . .-..+..+++
T Consensus 1 M~~-ik~VaViGAG~MG~giA~~~a-~~G~~V~-l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i~~~~~ 77 (292)
T PRK07530 1 MMA-IKKVGVIGAGQMGNGIAHVCA-LAGYDVL-LNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARITTATT 77 (292)
T ss_pred CCC-CCEEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999-888999896699999999999-6799689-9979889999999999999999997068888999999840777689
Q ss_pred HHHHHCCCCEEEEEECC-----CHHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 57852135504763101-----024788876432372157650222313589
Q gi|254780279|r 65 LAMAIQSVDGIIDFSSP-----ALTLQSLNISAQHNIVHIIGTTGFSVKENE 111 (280)
Q Consensus 65 l~~~~~~~DViIDFT~P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~~~ 111 (280)
++. +.++|+||+.-.. ..++.-++........+.+-|++++-.++.
T Consensus 78 ~~~-~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~la 128 (292)
T PRK07530 78 LDD-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILASNTSSISITRLA 128 (292)
T ss_pred HHH-HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHH
T ss_conf 889-664999998884745878989999986269884898758887505666
No 128
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.75 E-value=0.0082 Score=39.40 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=53.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 73799989987799999999838997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
.|||+|+|.|-||..++..+.+ .+.++. +++++..... .....+. .+ ....++ +.+.++|+||=+++|..+
T Consensus 1 ~mkI~IiGlGLIGgSla~al~~-~~~~V~-g~d~~~~~~~---~A~~~g~--id-~~~~~~-~~~~~aDliila~Pv~~~ 71 (280)
T PRK07417 1 SMNIGIVGLGLIGGSLGLDLRS-LGHTVY-GVSRRESTCE---RAIERGL--VD-EASTDL-SLLKDCDLVILALPIGLL 71 (280)
T ss_pred CCEEEEEECCHHHHHHHHHHHH-CCCEEE-EEECCHHHHH---HHHHCCC--CC-EECCCH-HHHCCCCEEEECCCHHHH
T ss_conf 9789999318579999999996-899799-9979999999---9998699--75-202787-460579989987974778
Q ss_pred HHHHHHHHHC
Q ss_conf 7888764323
Q gi|254780279|r 85 LQSLNISAQH 94 (280)
Q Consensus 85 ~~~~~~a~~~ 94 (280)
.+.++....+
T Consensus 72 ~~~~~~~~~~ 81 (280)
T PRK07417 72 LPPSEELIPA 81 (280)
T ss_pred HHHHHHHHHH
T ss_conf 9999999864
No 129
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.75 E-value=0.013 Score=38.04 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=44.6
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCC------CEEEEEEECCCCH--HHC--CCHHHHCCCC-CCCCCCCCCHHHHHCC
Q ss_conf 8737999899-8779999999983899------7899999648980--204--5536660875-4675455685785213
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPS------ITLHSIIVRSGSP--LIG--QDVGNFVGIS-PMGIKFSDNLAMAIQS 71 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~------~eLv~~i~~~~~~--~~g--~d~~~~~~~~-~~~v~i~~dl~~~~~~ 71 (280)
.||||+|+|| |..|..++-.+.+.+= ++| ..+|.+... ..| .|+.. ...+ -.++.+++|..+++++
T Consensus 1 ~p~kV~VtGAaG~Ig~~l~~~la~g~~~g~~~~i~L-~L~Di~~~~~~l~Gv~mel~d-~a~p~l~~i~~~~~~~~a~~~ 78 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVIL-HLLDIPPALKALEGVVMELQD-CAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEE-EEECCCCCCCCCCEEEEEHHH-CCCCCCCCEEECCCHHHHHCC
T ss_conf 981999988871889999999975885689970599-996677867765526745743-786455873522887898368
Q ss_pred CCEEE
Q ss_conf 55047
Q gi|254780279|r 72 VDGII 76 (280)
Q Consensus 72 ~DViI 76 (280)
+||+|
T Consensus 79 aDvvi 83 (325)
T cd01336 79 VDVAI 83 (325)
T ss_pred CCEEE
T ss_conf 87899
No 130
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.66 E-value=0.018 Score=37.09 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=47.2
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 998873799989987799999999838997899999648980204--5536660875-4675455685785213550476
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIID 77 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViID 77 (280)
|+...-||+|+|+|+.|..++-.+...+-..=...+|.......| .|+....... +..+ .+.|.+. +.++||||=
T Consensus 2 m~~k~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~~~a~g~a~Dl~h~~~~~~~~~i-~~gdy~~-~~daDvVVi 79 (315)
T PRK00066 2 MKKKHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI-YAGDYSD-CKDADLVVI 79 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEE-EECCHHH-HCCCCEEEE
T ss_conf 88789849999979889999999986699888999808987107899988854123688479-7399999-679999998
No 131
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.64 E-value=0.02 Score=36.76 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=44.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCC--CHHHHCC-CCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 737999899877999999998389978999996489802045--5366608-75467545568578521355047
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQ--DVGNFVG-ISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~--d~~~~~~-~~~~~v~i~~dl~~~~~~~DViI 76 (280)
-.||+|+|+|+.|..++-.+....-..=...+|.......|. |+..... .....+....|++. +.++||||
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~~d~~~-~~~aDvVV 76 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHH-HCCCCEEE
T ss_conf 886999897888999999999669988799993889833268888660401279855993799999-68999999
No 132
>TIGR00715 precor6x_red precorrin-6x reductase; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y , .; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process.
Probab=96.64 E-value=0.015 Score=37.70 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=70.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCC--CCCCCCC-HHHHHC--CCCEEEEEEC
Q ss_conf 3799989987799999999838997899999648980204553666087546--7545568-578521--3550476310
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPM--GIKFSDN-LAMAIQ--SVDGIIDFSS 80 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~--~v~i~~d-l~~~~~--~~DViIDFT~ 80 (280)
|+|.|.|.-+=++++++.+....+++++.-...+ .+.++.+..+..+. |-.-.+. +.+.++ ++|++||.||
T Consensus 1 ~~vll~GGT~dsr~~~~~L~~~~~~~i~~t~tt~----~~~~l~~~~~a~~v~~gaL~~~EGL~~~l~~~~i~~~vDAtH 76 (260)
T TIGR00715 1 MSVLLMGGTKDSRAIAKKLRALGDVEILVTVTTE----EGKKLLEISQASKVVTGALDKDEGLRELLKEESIDILVDATH 76 (260)
T ss_pred CEEEEEECCHHHHHHHHHHCCCCCEEEEEEECCC----CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCC
T ss_conf 9689971777899999740378758999874157----763001003777158757488875378886449638985797
Q ss_pred CCHH---HHHHHHHHHCCCEEEE
Q ss_conf 1024---7888764323721576
Q gi|254780279|r 81 PALT---LQSLNISAQHNIVHII 100 (280)
Q Consensus 81 P~~~---~~~~~~a~~~g~~vVi 100 (280)
|=+. .+.++.|.|.+++-|.
T Consensus 77 PFA~~~t~~a~~vc~E~~~~Yvr 99 (260)
T TIGR00715 77 PFAAQITKNALEVCKELGIPYVR 99 (260)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 35899999999999761981799
No 133
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.64 E-value=0.046 Score=34.25 Aligned_cols=122 Identities=16% Similarity=0.277 Sum_probs=67.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHHHCCCCEEEEEECCCHH
Q ss_conf 379998998779999999983899789999964898020455366608754675455-6857852135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~~~~~DViIDFT~P~~~ 84 (280)
=||+|+|.|+-|++.++.+.+.-...++...+..... ++.... ......+. +...+.+..+|+|| -+|..-
T Consensus 9 kkv~V~GlG~sG~aaa~~L~~~g~~~~v~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~l~~~d~vv--~SPGi~ 80 (468)
T PRK04690 9 KRVALWGWGREGRAAYRALRAQLPAQPLTVFCNAEEV---REVGAL---ADAALLVETEASAQRLAAFEVVV--KSPGIS 80 (468)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCC---HHHHHH---CCCCCEEECCCCHHHHHCCCEEE--ECCCCC
T ss_conf 9799983478799999999966990499972883246---466762---04575674677855761488999--899579
Q ss_pred --HHHHHHHHHCCCEE--------------------EEEECCCCHHH--HHHHHHHHC--CCCCEECCCHHHHHHHHHH
Q ss_conf --78887643237215--------------------76502223135--899987403--5552100001156899999
Q gi|254780279|r 85 --LQSLNISAQHNIVH--------------------IIGTTGFSVKE--NEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280)
Q Consensus 85 --~~~~~~a~~~g~~v--------------------ViGTTG~~~e~--~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280)
.+.+..+.+.|+++ +||.||=+-+. -..|..+-+ ..+...+.| ||..++..
T Consensus 81 ~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GN--IG~P~~~~ 157 (468)
T PRK04690 81 PYRPEALAAAAQGTPFIGGTALWFAEHAQPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN--IGQPLLEV 157 (468)
T ss_pred CCCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC--CCHHHHHH
T ss_conf 868999999987994886899999875311256787899969985899999999999857998289867--76446765
No 134
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.59 E-value=0.016 Score=37.47 Aligned_cols=101 Identities=12% Similarity=0.208 Sum_probs=52.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CCCHHHHCCC---C-------CCCCCCCCCHHHHHC
Q ss_conf 79998998779999999983899789999964898020------4553666087---5-------467545568578521
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQDVGNFVGI---S-------PMGIKFSDNLAMAIQ 70 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~d~~~~~~~---~-------~~~v~i~~dl~~~~~ 70 (280)
||+|+|+|-||+.++...+ ..+++++ .+|++..... ...+...... . -..+.+++|++. +.
T Consensus 4 kV~ViGaG~mG~~IA~~~a-~~G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~-~~ 80 (284)
T PRK07819 4 RVGVVGAGQMGSGIAEVCA-RAGVDVL-VFETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTFTTDLED-LA 80 (284)
T ss_pred EEEEECCCHHHHHHHHHHH-HCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHH-HC
T ss_conf 7999897789999999999-5799089-9979889999999999999999987278987999999963706689999-76
Q ss_pred CCCEEEEEECCCHH--HHHHHHHHH----CCCEEEEEECCCCHHHH
Q ss_conf 35504763101024--788876432----37215765022231358
Q gi|254780279|r 71 SVDGIIDFSSPALT--LQSLNISAQ----HNIVHIIGTTGFSVKEN 110 (280)
Q Consensus 71 ~~DViIDFT~P~~~--~~~~~~a~~----~g~~vViGTTG~~~e~~ 110 (280)
++|+||+.-..+.- .+..+..-+ -...+.+-|++++-.++
T Consensus 81 ~adlViEav~E~l~~K~~l~~~ld~~~~~p~~IlaSNTS~l~is~l 126 (284)
T PRK07819 81 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 126 (284)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 5999999073878888999999997428998599965888761344
No 135
>KOG1255 consensus
Probab=96.58 E-value=0.012 Score=38.20 Aligned_cols=115 Identities=12% Similarity=0.181 Sum_probs=85.4
Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEE
Q ss_conf 88737999899-8779999999983899789999964898020455366608754675455685785213--55047631
Q gi|254780279|r 3 QSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFS 79 (280)
Q Consensus 3 ~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT 79 (280)
++.-||..-|+ ||-|....++..+ -+..+|+++..+. .|...+|.+++.+..++.++ +|.-+-|-
T Consensus 36 nk~TkVi~QGfTGKqgTFHs~q~~e-YgTk~VgG~~pkK-----------~Gt~HLG~PVF~sV~eA~~~t~a~AsvIyV 103 (329)
T KOG1255 36 NKDTKVICQGFTGKQGTFHSQQALE-YGTKVVGGVNPKK-----------GGTTHLGLPVFNSVAEAKKETGADASVIYV 103 (329)
T ss_pred CCCCEEEEECCCCCCCCEEHHHHHH-HCCCEEECCCCCC-----------CCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 5886599832357765320788887-2771330468885-----------753212842566799998740898349980
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHH--HCCCCCEECCCHH
Q ss_conf 010247888764323721576502-2231358999874--0355521000011
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTT-GFSVKENEVISSF--ARNAPIVKSSNMS 129 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~l~~~--s~~~~il~apN~S 129 (280)
.|-....-++.+++..+|+|+|.| |..+.++-.++.. ++...-|..||--
T Consensus 104 Ppp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCP 156 (329)
T KOG1255 104 PPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCP 156 (329)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 78278899999885448679996279855668999999854333422079998
No 136
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.53 E-value=0.029 Score=35.60 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=68.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC---CCCEEEEEE-CCC
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521---355047631-010
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ---SVDGIIDFS-SPA 82 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~---~~DViIDFT-~P~ 82 (280)
+|.|+|+|-+|...+..+... +..-+.+++..+.+. +.....|....--+-.+++++... .+|++||++ .|+
T Consensus 172 ~VlV~G~G~iGl~~~~~ak~~-Ga~~Vi~~d~~~~rl---~~a~~~Ga~~~i~~~~~~~~~~~~~~g~~Dvvie~~G~~~ 247 (343)
T PRK09880 172 RVFISGVGPIGCLIVSAVKTL-GAAEIVCADLSPRSL---SLARQMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPS 247 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCHHHH---HHHHHCCCCEEECCCCCCHHHHHHHCCCCCEEEEECCCHH
T ss_conf 899984776799999999986-998799997978999---9999729979987987439999963699778999219999
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCH
Q ss_conf 2478887643237215765022231358999874035552100001
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~ 128 (280)
+....++.+...|.-+++|..|-. .++....-..+++.+.-+-.+
T Consensus 248 ~~~~al~~~r~gG~iv~vG~~~~~-~~~~~~~l~~kei~i~Gs~~~ 292 (343)
T PRK09880 248 SVNTCLEVTRAKGVMVQVGMGGAM-PEFPMMTLISKEISLKGSFRF 292 (343)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCC-CCCCHHHHHHCCCEEEEECCC
T ss_conf 999999737798399999727988-870899998588499990486
No 137
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.51 E-value=0.037 Score=34.95 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=60.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCH-HHHHCCCCEEEEEEC
Q ss_conf 8737999899877999999998389978999996489802045536660875467545--5685-785213550476310
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNL-AMAIQSVDGIIDFSS 80 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl-~~~~~~~DViIDFT~ 80 (280)
..++|+|+|.|.||+.+++.+....-..-+.+.++...... ... ..++.. ..+. ......+|+||=.++
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~---~a~-----~lgv~d~~~~~~~~~~~~~aDlVivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLK---AAL-----ELGVIDELTVAGLAEAAAEADLVIVAVP 73 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH---HHH-----HCCCCHHHCCCHHHHHCCCCCEEEEECC
T ss_conf 86489998774677999999997698479972477467787---766-----3585301001155541356998999577
Q ss_pred CCHHHHHHHHHHH-CCCE-EEEEECCCCHHHHHHHHHHH
Q ss_conf 1024788876432-3721-57650222313589998740
Q gi|254780279|r 81 PALTLQSLNISAQ-HNIV-HIIGTTGFSVKENEVISSFA 117 (280)
Q Consensus 81 P~~~~~~~~~a~~-~g~~-vViGTTG~~~e~~~~l~~~s 117 (280)
..++.++++.... .+.. +|+.+|..-..-.+.++++.
T Consensus 74 i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~ 112 (279)
T COG0287 74 IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL 112 (279)
T ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHC
T ss_conf 889999999863037999889736420178999999746
No 138
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.51 E-value=0.0063 Score=40.17 Aligned_cols=70 Identities=27% Similarity=0.371 Sum_probs=42.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 37999899-8779999999983899789999964898020455366608754675455685785213550476310
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS 80 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~ 80 (280)
|||+|+|+ ||.|+.+++... ..+.+++++ .|+.++..... -..+...++.--..+.+.+...|+||+.-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~-~RGHeVTAi-vRn~~K~~~~~---~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEAL-KRGHEVTAI-VRNASKLAARQ---GVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHH-HCCCEEEEE-EECHHHCCCCC---CCEEECCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 907899537456799999998-679804899-80767665223---530200022274566766358766997215
No 139
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.46 E-value=0.011 Score=38.49 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=55.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC--------HHHCCCHHH----H-----------CCCCCCCCCC-C
Q ss_conf 79998998779999999983899789999964898--------020455366----6-----------0875467545-5
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS--------PLIGQDVGN----F-----------VGISPMGIKF-S 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~--------~~~g~d~~~----~-----------~~~~~~~v~i-~ 62 (280)
||+|+|+|-+|..++..+... ++-=...+|.+.- -+...|+|. . ..+......+ .
T Consensus 1 kV~IvG~GGLG~~~a~~La~a-Gvg~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~i~i~~~~~~l~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 989987678899999999981-8973999989946664430132477747974999999999987979889999144499
Q ss_pred CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHH-CCCEEEEEE
Q ss_conf 68578521355047631-01024788876432-372157650
Q gi|254780279|r 63 DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQ-HNIVHIIGT 102 (280)
Q Consensus 63 ~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~-~g~~vViGT 102 (280)
+++++.++.+|+|+|.| +..+-....+.|.+ .++|+|.|+
T Consensus 80 ~n~~~l~~~~D~ViD~~Dn~~tr~~l~~~~~~~~~~plv~as 121 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999837999999999989999999999998799599997
No 140
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.45 E-value=0.023 Score=36.38 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=51.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CC---CHHHHCC---CC-------CCCCCCCCCHHH
Q ss_conf 79998998779999999983899789999964898020------45---5366608---75-------467545568578
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQ---DVGNFVG---IS-------PMGIKFSDNLAM 67 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~---d~~~~~~---~~-------~~~v~i~~dl~~ 67 (280)
||+|+|+|.||+.++...+ ..+++++ .+|.+..... .. .+..... .. ...+..+++++
T Consensus 5 ~VaViGaG~MG~gIA~~~a-~~G~~V~-l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~~- 81 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFA-RTGYDVT-IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE- 81 (291)
T ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH-
T ss_conf 8999887688999999999-5899889-998998999999999997189999998668999999999983664358888-
Q ss_pred HHCCCCEEEEEECCC-----HHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 521355047631010-----2478887643237215765022231358
Q gi|254780279|r 68 AIQSVDGIIDFSSPA-----LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280)
Q Consensus 68 ~~~~~DViIDFT~P~-----~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280)
.+.++|+||+.-.-+ .++.-++........+-+-|++++-.++
T Consensus 82 ~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~i 129 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEI 129 (291)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf 976599999888388999999999999658998379860887786999
No 141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.43 E-value=0.02 Score=36.81 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=49.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH--
Q ss_conf 799989987799999999838997899999648980204553666087546754556857852135504763101024--
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT-- 84 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~-- 84 (280)
||.|+|.|+-|.++++.+. ..+.++.+.-++.... . ..-+..+... + ...+..+.++.+|+|| .+|..-
T Consensus 19 kvlV~GlG~SG~s~a~~L~-~~G~~v~~~D~~~~~~-~--~~~~~~~~~~--~-~~~~~~~~~~~~d~vV--~SPGI~~~ 89 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLS-ELGCDVVVADDNETQR-H--MLIEVVDVAD--I-STAQASDALDSYSIVV--TSPGWRPD 89 (476)
T ss_pred CEEEEEECHHHHHHHHHHH-HCCCEEEEEECCCCHH-H--HHHHHCCCCE--E-CCCCHHHHHCCCCEEE--ECCCCCCC
T ss_conf 8899922788999999999-7899799998998703-5--7887479856--5-1553065646899999--89978997
Q ss_pred HHHHHHHHHCCCEEE
Q ss_conf 788876432372157
Q gi|254780279|r 85 LQSLNISAQHNIVHI 99 (280)
Q Consensus 85 ~~~~~~a~~~g~~vV 99 (280)
.+.+..|.+.|+|++
T Consensus 90 ~p~l~~a~~~gi~vi 104 (476)
T PRK00141 90 SPLLVDAQSAGLEVI 104 (476)
T ss_pred CHHHHHHHHCCCCEE
T ss_conf 999999998799577
No 142
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.42 E-value=0.017 Score=37.19 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=40.6
Q ss_pred CE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CCCHHHHCCC----------CCCCCCCCCCHHH
Q ss_conf 73-79998998779999999983899789999964898020------4553666087----------5467545568578
Q gi|254780279|r 5 PM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQDVGNFVGI----------SPMGIKFSDNLAM 67 (280)
Q Consensus 5 ~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~d~~~~~~~----------~~~~v~i~~dl~~ 67 (280)
+| ||+|+|+|-||+.|+... ...+++++ .+|.+..... .+.+...... ....+..+++++.
T Consensus 2 ~i~~VaViGaGtMG~gIA~~~-a~aG~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~ 79 (503)
T PRK08268 2 SIATVAVIGAGAMGAGIAQVA-AQAGHTVL-LYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALARLRPVEALAD 79 (503)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCHHH
T ss_conf 967899979688999999999-93899089-9979989999999999999999997699998899999847474177889
Q ss_pred HHCCCCEEEEE
Q ss_conf 52135504763
Q gi|254780279|r 68 AIQSVDGIIDF 78 (280)
Q Consensus 68 ~~~~~DViIDF 78 (280)
+.++|+||+.
T Consensus 80 -l~~aDlVIEA 89 (503)
T PRK08268 80 -LADCDLVVEA 89 (503)
T ss_pred -HCCCCEEEEC
T ss_conf -7579999993
No 143
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.38 E-value=0.011 Score=38.42 Aligned_cols=100 Identities=10% Similarity=0.192 Sum_probs=58.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC--------HHHCCCHHH----H----CC-CC-CC-----CCCC-C
Q ss_conf 79998998779999999983899789999964898--------020455366----6----08-75-46-----7545-5
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS--------PLIGQDVGN----F----VG-IS-PM-----GIKF-S 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~--------~~~g~d~~~----~----~~-~~-~~-----~v~i-~ 62 (280)
||.|+|+|-+|..++..+... ++-=...+|.+.- -+...|+|. . .. +. .. ...+ .
T Consensus 29 ~VlivG~GGLG~~~a~~La~a-GVG~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~v~I~~~~~~l~~ 107 (209)
T PRK08644 29 KVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDVVEPSNLNRQQYFISQIGMFKVEALKENLLRINPFVKIEVHQVKIDE 107 (209)
T ss_pred CEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCH
T ss_conf 689988878899999999993-8981899889990154110375678775975699999998744898289997224898
Q ss_pred CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHH-CCCEEEEEE--CCCCH
Q ss_conf 68578521355047631-01024788876432-372157650--22231
Q gi|254780279|r 63 DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQ-HNIVHIIGT--TGFSV 107 (280)
Q Consensus 63 ~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~-~g~~vViGT--TG~~~ 107 (280)
+++.+.++.+|+|||.| +.+.-.-..+.|.+ .++|+|.|+ .||..
T Consensus 108 ~n~~~l~~~~DiViDctDN~~tR~li~~~c~~~~~~plV~as~i~g~g~ 156 (209)
T PRK08644 108 DNIEELFKDCDIVVEAFDNAETKAMLVETVLEKKGKKVVSASGMAGYGD 156 (209)
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECC
T ss_conf 9999998579999999999999999999999977996899961215757
No 144
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.38 E-value=0.018 Score=37.06 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=61.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHHCC-----CC-CCCC-----CCC
Q ss_conf 79998998779999999983899789999964898-------------020455366608-----75-4675-----455
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNFVG-----IS-PMGI-----KFS 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~~~-----~~-~~~v-----~i~ 62 (280)
||.|+|+|-+|-++++.+... ++.-..++|.+.- ..+|+.-.+... .. ...+ .+.
T Consensus 1 KVlvvGaGglG~e~lk~La~~-Gvg~i~ivD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 989988888899999999982-8985999719922610146682768221887099999999998888967998616766
Q ss_pred CC--HHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEE-EECCCCH
Q ss_conf 68--578521355047631-010247888764323721576-5022231
Q gi|254780279|r 63 DN--LAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHII-GTTGFSV 107 (280)
Q Consensus 63 ~d--l~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vVi-GTTG~~~ 107 (280)
+. ..+.++++|+|+|.. +-++-...-+.|..+++|+|- ||+||.-
T Consensus 80 ~~~~~~~f~~~~DvVi~alDN~~aR~~vN~~C~~~~~PlIegGt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLG 128 (312)
T ss_pred CCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCEE
T ss_conf 8643498896299999766789999999999998399759720246413
No 145
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.046 Score=34.25 Aligned_cols=129 Identities=15% Similarity=0.231 Sum_probs=71.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCCCCHHHH-HCCCCEEEEEECCC
Q ss_conf 379998998779999999983899789999964898020455366608754--675455685785-21355047631010
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFSDNLAMA-IQSVDGIIDFSSPA 82 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~~dl~~~-~~~~DViIDFT~P~ 82 (280)
|+++|+|+|++|..+++.+.+. +.+++. +++++..... -..+.....- ....-.+-|+++ ++++|++|=.|.-+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g~~Vv~-Id~d~~~~~~-~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-GHNVVL-IDRDEERVEE-FLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEE-EECCHHHHHH-HHHHCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCC
T ss_conf 9899989857889999999878-990899-9768899998-632000449999268898999867986389999980886
Q ss_pred HHHH-HHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHH
Q ss_conf 2478-8876432-37215765022231358999874035552100001156899999999
Q gi|254780279|r 83 LTLQ-SLNISAQ-HNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVE 140 (280)
Q Consensus 83 ~~~~-~~~~a~~-~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~ 140 (280)
.... ....+.+ .|+|-|+...- +++..+.+++.. +-.+.+|-...|-.+...+..
T Consensus 78 ~~N~i~~~la~~~~gv~~viar~~-~~~~~~~~~~~g--~~~ii~Pe~~~~~~l~~~i~~ 134 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIARAR-NPEHEKVLEKLG--ADVIISPEKLAAKRLARLIVT 134 (225)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHHHCC--CCEEECHHHHHHHHHHHHHCC
T ss_conf 799999999998739984999956-941677898679--948975589999999998538
No 146
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=96.37 E-value=0.014 Score=37.90 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=63.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH---------HCCCHH------HH----CCCCCCCCCC------
Q ss_conf 7999899877999999998389978999996489802---------045536------66----0875467545------
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL---------IGQDVG------NF----VGISPMGIKF------ 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~---------~g~d~~------~~----~~~~~~~v~i------ 61 (280)
+|.|+|+|=+|..++..++. -+.-=+.++|.+.-.. ...|++ +. ...-+.+|.+
T Consensus 23 ~VLiiGaGgLGs~~~~~LA~-AGVG~i~i~D~D~V~~SNLqRQ~Lf~e~Dv~~~~pK~e~aa~~l~~LN~~i~v~a~~~~ 101 (210)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAA-AGVGTITIVDDDHVDLSNLQRQILFAEEDVGTLRPKVEAAAERLRELNSDIRVTALKER 101 (210)
T ss_pred CEEEEEECHHHHHHHHHHHH-CCCCEEEEEECCEECHHHCHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 65999726145689999982-88837899851677010120554303244201315899999999853889689985420
Q ss_pred --CCCHHHHHCCCC--EEEEEE-CCCHHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf --568578521355--047631-01024788876432372157650-2223
Q gi|254780279|r 62 --SDNLAMAIQSVD--GIIDFS-SPALTLQSLNISAQHNIVHIIGT-TGFS 106 (280)
Q Consensus 62 --~~dl~~~~~~~D--ViIDFT-~P~~~~~~~~~a~~~g~~vViGT-TG~~ 106 (280)
..++++.+.++| ||||+| +=++-+-+=+.|.++++|+|.|+ =||.
T Consensus 102 vt~~~~~~~i~~~DPdlVlDc~DNf~tryliNdaC~~~~~PlI~aavvG~~ 152 (210)
T TIGR02356 102 VTAENLELLIENVDPDLVLDCTDNFATRYLINDACQALGIPLISAAVVGFE 152 (210)
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 277999999623899689615668778899999999847986999887635
No 147
>PRK05086 malate dehydrogenase; Provisional
Probab=96.35 E-value=0.049 Score=34.09 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=52.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEEECCC-CHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE------
Q ss_conf 37999899-87799999999838-9978999996489-802045536660875467545568578521355047------
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNN-PSITLHSIIVRSG-SPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII------ 76 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~-~~~eLv~~i~~~~-~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI------ 76 (280)
|||+|+|+ |+.|+.++-.+..+ +-.+-...+|..+ .+-...|+..............++..+.++.+|+||
T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~~~~G~alDL~h~~~~~~~~~~~~~~~~~~l~~adiVvitAG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEECCCHHHHHCCCCEEEECCCCC
T ss_conf 98999989986999999999828987774999758888610565654787546653461698678717999999878989
Q ss_pred -----------------------------------EEECCCHHHHHH-HH-HHH---CCCEEEEEECCCCHHHHH
Q ss_conf -----------------------------------631010247888-76-432---372157650222313589
Q gi|254780279|r 77 -----------------------------------DFSSPALTLQSL-NI-SAQ---HNIVHIIGTTGFSVKENE 111 (280)
Q Consensus 77 -----------------------------------DFT~P~~~~~~~-~~-a~~---~g~~vViGTTG~~~e~~~ 111 (280)
-.|+|-.++-++ .. +.+ ..+.-|+|+|-++.-+.+
T Consensus 81 rkpG~tR~dLl~~Na~I~~~i~~~I~~~~p~aiiivvsNPvD~mt~ia~~~~k~~g~~~~~rv~G~t~LDsaR~r 155 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSE 155 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH
T ss_conf 985898899999878999999998872089718999548327789999999998389980113333128899999
No 148
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.32 E-value=0.024 Score=36.23 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=67.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCCCCC-CCCHHHHHCCCCEEEEEE-CCCH
Q ss_conf 99989987799999999838997899999648980204--5536660875467545-568578521355047631-0102
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMGIKF-SDNLAMAIQSVDGIIDFS-SPAL 83 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~v~i-~~dl~~~~~~~DViIDFT-~P~~ 83 (280)
|+|+|+|+.|..++-.+...+-..=...+|.......| .|+............+ .++.+ .+.++||||=.. .|.-
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~~~~-~~~daDvvVitaG~~rk 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHH-HHCCCCEEEECCCCCCC
T ss_conf 98989688999999999867998879998189981156888877256346885398279889-96799999987898999
Q ss_pred -HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf -478887643237215765022231358999874035552100001156899999999999
Q gi|254780279|r 84 -TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280)
Q Consensus 84 -~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280)
....... ++.+.+++ .+..+.+.+++.+.-++...|- +++|..++.+.+
T Consensus 80 pg~tR~dl-l~~Na~I~-------k~i~~~i~~~~p~~ivivvtNP---vDv~t~~~~k~s 129 (300)
T cd00300 80 PGETRLDL-INRNAPIL-------RSVITNLKKYGPDAIILVVSNP---VDILTYVAQKLS 129 (300)
T ss_pred CCCCHHHH-HHHHHHHH-------HHHHHHHHHCCCCCEEEECCCC---HHHHHHHHHHHH
T ss_conf 79988999-99888999-------9999999841997189985796---699999999961
No 149
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.32 E-value=0.035 Score=35.08 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=54.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH----C--CCCEEEEEE-
Q ss_conf 799989987799999999838997899999648980204553666087546754556857852----1--355047631-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI----Q--SVDGIIDFS- 79 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~----~--~~DViIDFT- 79 (280)
+|.|.|+|-+|...+... +..+..-+-++++.+.+. +.....|....--.-.+++.+.+ . .+|++||++
T Consensus 179 ~VlV~GaG~iGl~a~~~a-k~~Ga~~Vi~~d~~~~rl---~~A~~lGa~~~i~~~~~~~~~~v~~~t~g~G~Dvvie~~G 254 (358)
T TIGR03451 179 SVAVIGCGGVGDAAIAGA-ALAGASKIIAVDIDDRKL---EWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG 254 (358)
T ss_pred EEEEECCCHHHHHHHHHH-HHCCCCEEEEEECCHHHH---HHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCC
T ss_conf 899967376999999999-983991899991988999---9999659909973998788999999858988749999999
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 010247888764323721576502
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTT 103 (280)
.|++....++.+...|.-+++|..
T Consensus 255 ~~~~~~~al~~~~~gG~iv~~G~~ 278 (358)
T TIGR03451 255 RPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 989999999976279699999225
No 150
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.31 E-value=0.044 Score=34.43 Aligned_cols=126 Identities=14% Similarity=0.146 Sum_probs=63.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCC--CHHHHCCCC--CCCCCCCCCHHHHHCCCCEEEEEE-
Q ss_conf 737999899877999999998389978999996489802045--536660875--467545568578521355047631-
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQ--DVGNFVGIS--PMGIKFSDNLAMAIQSVDGIIDFS- 79 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~--d~~~~~~~~--~~~v~i~~dl~~~~~~~DViIDFT- 79 (280)
.-||+|+|+|+.|+.++-.+....-.+| ..+|..+....|. |+....... ...+..+.|.+. +.++||||=..
T Consensus 7 ~~KV~IIGaG~VG~~~A~~l~~~~l~ei-vLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy~~-~~~aDiVVitAG 84 (322)
T PTZ00082 7 RKKISLIGSGNIGGVMAYLIQLKNLADV-VLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSYDD-IAGSDVVIVTAG 84 (322)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCHHH-HCCCCEEEECCC
T ss_conf 9829998969899999999963899779-99978898008899987663644688857983799999-779999998988
Q ss_pred CC---CHHHH---HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 01---02478---887643237215765022231358999874035552100001156899999999999
Q gi|254780279|r 80 SP---ALTLQ---SLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280)
Q Consensus 80 ~P---~~~~~---~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280)
.| .-+.+ .... ++.+.+++ .+-...+.+.+-+.-++...|- +++|..++.+.+
T Consensus 85 ~~~kpg~t~~~~~R~dL-l~~Na~I~-------~~i~~~i~~~~p~aiiivvsNP---vDv~t~~~~k~s 143 (322)
T PTZ00082 85 LAKAPGKSDDEWNRDDL-LPLNAKIM-------IEVGENIKKYCPNAFVIVITNP---LDVMVQLLLKVS 143 (322)
T ss_pred CCCCCCCCCCCCCHHHH-HHHHHHHH-------HHHHHHHHHCCCCCEEEECCCC---HHHHHHHHHHHH
T ss_conf 87789998765678899-99889999-------9999998740998359974892---699999999976
No 151
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.30 E-value=0.037 Score=34.88 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=58.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 7999899877999999998389-978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
+|.|+|.|=||..++..+.+.. ..+++ +++++.... ....+..- --....++++...++|+||=+|+|..+.
T Consensus 2 ~V~IiGlGLIGgSlalalk~~g~~~~i~-~~d~~~~~l-----~~A~~~g~-id~~~~~~~~~~~~~DlVvlatPv~~~~ 74 (357)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFII-GYDPSGAQL-----ARALGFGV-IDELAEDLARAAAEADLIVLAVPVDATA 74 (357)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCEEEE-EECCCHHHH-----HHHHHCCC-CCEECCCHHHHCCCCCEEEECCCHHHHH
T ss_conf 7999977878999999998549976999-966999999-----99986899-7730488767156799999949999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 88876432372157650222313
Q gi|254780279|r 86 QSLNISAQHNIVHIIGTTGFSVK 108 (280)
Q Consensus 86 ~~~~~a~~~g~~vViGTTG~~~e 108 (280)
+.++.....+...++--+|=++.
T Consensus 75 ~~l~~l~~l~~~~ivTDVgSvK~ 97 (357)
T PRK06545 75 ALLAELADLAPGVIVTDVGSVKG 97 (357)
T ss_pred HHHHHHHHCCCCCEEEECCCCHH
T ss_conf 99999872389978997510079
No 152
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.30 E-value=0.016 Score=37.34 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=46.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CCCH
Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521355047631-0102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P~~ 83 (280)
.-||.|+|+|.||+.+++.+.+. +..=+.++.|+..+ ...+....+.. ..-.+++.+.+..+||||-.| .|..
T Consensus 178 ~~~vLviGaGem~~l~~~~L~~~-g~~~i~v~nRt~~r--a~~la~~~g~~---~~~~~~l~~~l~~~DvvisaT~s~~~ 251 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYER--AEELAKELGGN---AVPLDELLELLNEADVVISATGAPHY 251 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHHHHHCCCE---EECHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 16799986879999999999965-99825997686789--99999974989---97299999999768999992799962
No 153
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=96.27 E-value=0.017 Score=37.23 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=66.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
-+++|+|+|..++.-++.+..-..++-+.+++|..... ....+........+...+++++++..+||||-.|+....
T Consensus 130 ~~l~iiGaG~QA~~~l~al~~v~~i~~v~v~~r~~~~~--~~f~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~s~~~- 206 (312)
T pfam02423 130 STLAIIGAGAQAEFQAEALSAVLPIEEIRIYDRDPEAA--EKFARNLQGKGFEIVACTSAEEAVEGADIVVTVTPDKEF- 206 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHH--HHHHHHHHHCCCCEEEECCHHHHHHCCCEEEEEECCCCC-
T ss_conf 57999646253899999999619976899996898999--999999983499659948999997149989997359977-
Q ss_pred HHH-HHHHHCCCEEE-EEECCCCHHH
Q ss_conf 888-76432372157-6502223135
Q gi|254780279|r 86 QSL-NISAQHNIVHI-IGTTGFSVKE 109 (280)
Q Consensus 86 ~~~-~~a~~~g~~vV-iGTTG~~~e~ 109 (280)
.++ ...++-|.++. +|+..+...+
T Consensus 207 P~~~~~~l~~G~hv~~vGs~~p~~~E 232 (312)
T pfam02423 207 PILKAEWVKPGVHINAVGADCPGKTE 232 (312)
T ss_pred CCCCHHHCCCCCEEEEECCCCCCCCC
T ss_conf 50077883898689972699997043
No 154
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.26 E-value=0.027 Score=35.87 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=60.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH----CCCCCCCCC-------CC
Q ss_conf 79998998779999999983899789999964898-------------0204553666----087546754-------55
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF----VGISPMGIK-------FS 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~----~~~~~~~v~-------i~ 62 (280)
||.|+|+|-+|-.+++.+... ++.-..++|.+.- ..+|+.-.+. ...-..++. +.
T Consensus 1 KVlvvGaGglGce~~k~La~~-Gvg~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~Np~~~I~~~~~~v~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 989994888799999999983-9986999759900567701302446442688229999999998789977999805568
Q ss_pred C--C-HHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEE-ECCCCH
Q ss_conf 6--8-578521355047631-0102478887643237215765-022231
Q gi|254780279|r 63 D--N-LAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIG-TTGFSV 107 (280)
Q Consensus 63 ~--d-l~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViG-TTG~~~ 107 (280)
+ + ..+.++.+|+|+|.+ +-++-...-+.|..+++|+|-| |+||.-
T Consensus 80 ~e~~~~~~f~~~~DvVi~alDN~~aR~~vN~~c~~~~~PLIegGt~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKG 129 (234)
T ss_pred CCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCEE
T ss_conf 62105798885299999885788899999999998099859720246147
No 155
>KOG0172 consensus
Probab=96.24 E-value=0.0091 Score=39.08 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=77.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC---CHHHHHCCCCEEEEEECCCH
Q ss_conf 799989987799999999838997899999648980204553666087546754556---85785213550476310102
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD---NLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~---dl~~~~~~~DViIDFT~P~~ 83 (280)
+|.+.|+|..-+-++..++++.|.++.-++.... .++-+..-..++..-+.+.+ .+.....+-|++|-. .|-.
T Consensus 4 ~vlllgsg~v~~p~~d~ls~~~dv~vtva~~~~~---~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSL-lP~t 79 (445)
T KOG0172 4 GVLLLGSGFVSRPVADFLSRKKDVNVTVASRTLK---DAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISL-LPYT 79 (445)
T ss_pred CEEEECCCCCCCHHHHHHHHCCCCEEEEEHHHHH---HHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCEEEEE-CCCH
T ss_conf 2699537531334788874167823898634677---89998427886506777425178898651541126640-4301
Q ss_pred H-HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCE
Q ss_conf 4-788876432372157650222313589998740355521
Q gi|254780279|r 84 T-LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIV 123 (280)
Q Consensus 84 ~-~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il 123 (280)
. .-..+.|+.+++++| |+-|.+.++++|...+..+++-
T Consensus 80 ~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~t 118 (445)
T KOG0172 80 FHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGST 118 (445)
T ss_pred HHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHCCCCCCE
T ss_conf 33889988888640354--1103688898621121478855
No 156
>KOG1502 consensus
Probab=96.22 E-value=0.066 Score=33.21 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=63.7
Q ss_pred CCC-CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC------CCCCCCCCHHHHHCCC
Q ss_conf 998-8737999899-8779999999983899789999964898020455366608754------6754556857852135
Q gi|254780279|r 1 MHQ-SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP------MGIKFSDNLAMAIQSV 72 (280)
Q Consensus 1 M~~-~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~------~~v~i~~dl~~~~~~~ 72 (280)
|.. ..++|+|.|+ |-.|+.+++.+.+ .+.++.|.+-.++....-.-+-.+-+.++ .++.-.+.+..+++.|
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~-rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502 1 MDQDEGKKVCVTGASGFIGSWIVKLLLS-RGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHCC
T ss_conf 9877872799948820899999999986-899899997086305658999865157544258852435513599997078
Q ss_pred CEEE------EEECC-----------CHHHHHHHHHHHCC--CEEEE
Q ss_conf 5047------63101-----------02478887643237--21576
Q gi|254780279|r 73 DGII------DFSSP-----------ALTLQSLNISAQHN--IVHII 100 (280)
Q Consensus 73 DViI------DFT~P-----------~~~~~~~~~a~~~g--~~vVi 100 (280)
|.|+ +|..+ +++.+.++.|.+.+ +++|.
T Consensus 80 dgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~ 126 (327)
T KOG1502 80 DGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY 126 (327)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 78999176678777874776631788889999999860587226999
No 157
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.21 E-value=0.022 Score=36.51 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=58.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CCCH-
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631-0102-
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SPAL- 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P~~- 83 (280)
-||.++|+|.||+.+++.+.. .++.-+.++.|+-.+ .+++....+ ..+.-.+++...+.++||||-.| .|..
T Consensus 179 ~~vlvIGAGem~~lva~~L~~-~g~~~i~IaNRT~er--A~~La~~~~---~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAE-KGVKKITIANRTLER--AEELAKKLG---AEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCHHH--HHHHHHHHC---CEEECHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf 769998651899999999985-898779997587899--999999838---70221877887652079999906998554
Q ss_pred -HHHHHHHHHHCCCE
Q ss_conf -47888764323721
Q gi|254780279|r 84 -TLQSLNISAQHNIV 97 (280)
Q Consensus 84 -~~~~~~~a~~~g~~ 97 (280)
....++.+.+..+.
T Consensus 253 i~~~~ve~a~~~r~~ 267 (414)
T COG0373 253 ITREMVERALKIRKR 267 (414)
T ss_pred CCHHHHHHHHHCCCC
T ss_conf 078889988741167
No 158
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.20 E-value=0.033 Score=35.30 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=41.7
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCE-----EEEEEECCCC--HHHCC--CHHHHCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 37999899-877999999998389978-----9999964898--02045--53666087546754556857852135504
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSIT-----LHSIIVRSGS--PLIGQ--DVGNFVGISPMGIKFSDNLAMAIQSVDGI 75 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~e-----Lv~~i~~~~~--~~~g~--d~~~~~~~~~~~v~i~~dl~~~~~~~DVi 75 (280)
|||+|+|| |..|+.++-.+...+=+. ....+|..+. +..|. |+.....-...++.++++..+.++.+|+|
T Consensus 1 ~KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~a~~~~~~v~~~~~~~~~~~~aDvV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCEE
T ss_conf 98999899978999999999728636998600899975888655531487866534665558748428858983799889
Q ss_pred E
Q ss_conf 7
Q gi|254780279|r 76 I 76 (280)
Q Consensus 76 I 76 (280)
|
T Consensus 81 i 81 (323)
T cd00704 81 I 81 (323)
T ss_pred E
T ss_conf 9
No 159
>PRK08223 hypothetical protein; Validated
Probab=96.18 E-value=0.03 Score=35.58 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=59.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----CCCCC-C-----CCC-
Q ss_conf 379998998779999999983899789999964898-------------0204553666-----08754-6-----754-
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----VGISP-M-----GIK- 60 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----~~~~~-~-----~v~- 60 (280)
=||+|+|+|-.|..++..++. .++--..++|.+.- ..+|+.-.+. ..+++ . ...
T Consensus 28 s~VlVvG~GGlGs~~a~~LAr-aGVG~i~lvD~D~velSNLnRQi~~~~~diG~~Kveva~e~l~~INP~v~V~~~~~~l 106 (287)
T PRK08223 28 SRVAIAGLGGVGGVHLLTLAR-LGIGKFNIADFDVFELVNSNRQYGAMMSSNGRPKVEVMREIALDINPELEIRAFPEGI 106 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 968999367557999999998-2897599974998463440222344743449858999999999869898799958789
Q ss_pred CCCCHHHHHCCCCEEEEEEC---CCHHHHHHHHHHHCCCEEEEEEC-CCC
Q ss_conf 55685785213550476310---10247888764323721576502-223
Q gi|254780279|r 61 FSDNLAMAIQSVDGIIDFSS---PALTLQSLNISAQHNIVHIIGTT-GFS 106 (280)
Q Consensus 61 i~~dl~~~~~~~DViIDFT~---P~~~~~~~~~a~~~g~~vViGTT-G~~ 106 (280)
..+++++.++.+|||||.|- ...-+-.-..|.+.|+|+|.|.- ||.
T Consensus 107 t~~N~~~~l~~~DvVvDg~DnF~~~tR~ll~~ac~~~giP~v~~a~l~f~ 156 (287)
T PRK08223 107 GKENLDTFLDGVDVYVDGLDFFVFDIRRLLFREAQARGIPALTAAPLGFS 156 (287)
T ss_pred CHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 98999999867999997966788318999999999859984983154103
No 160
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.16 E-value=0.029 Score=35.68 Aligned_cols=70 Identities=27% Similarity=0.447 Sum_probs=40.8
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHCC--CHHHHCCCCCC--CCCCCCCHHHHHCCCCEEE
Q ss_conf 37999899-8779999999983899789999964898--02045--53666087546--7545568578521355047
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGS--PLIGQ--DVGNFVGISPM--GIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~--~~~g~--d~~~~~~~~~~--~v~i~~dl~~~~~~~DViI 76 (280)
|||+|+|+ |+.|..++-.+...+-+.=...+|.+.. +..|. |+......... .+...+|.+ .++++||||
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~-~~~daDivV 77 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVI 77 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEECCCHH-HHCCCCEEE
T ss_conf 98999999976999999999837998759996055643423112355450343368876798279889-968999999
No 161
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.14 E-value=0.024 Score=36.27 Aligned_cols=87 Identities=13% Similarity=0.170 Sum_probs=51.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CCCHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631-01024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P~~~ 84 (280)
-||.|+|+|.||+.+++.+.+.. ..=+.++.|+..+ .+.+....+ .......+++.+.+..+||||-.| .|..+
T Consensus 182 ~~vlvvGaGem~~l~~k~L~~~g-~~~i~v~nRt~~r--a~~la~~~~--~~~~~~~~~l~~~l~~aDivisaT~a~~~i 256 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALA-PKQIMLANRTIEK--AQKITSAFR--NASAHYLSELPQLIKKADIIIAAVNVLEYI 256 (414)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCHHH--HHHHHHHHC--CCCCCCHHHHHHHHHHCCEEEEECCCCHHH
T ss_conf 83899668647899999999769-9879994575677--999999708--885016999999986388799816982444
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 7888764323721576
Q gi|254780279|r 85 LQSLNISAQHNIVHII 100 (280)
Q Consensus 85 ~~~~~~a~~~g~~vVi 100 (280)
...-. . ..+|+++
T Consensus 257 i~~~~--~-~~~p~~~ 269 (414)
T PRK13940 257 VTCKY--V-GDKPRVF 269 (414)
T ss_pred CCHHH--H-CCCCEEE
T ss_conf 04866--4-5797589
No 162
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.11 E-value=0.034 Score=35.21 Aligned_cols=92 Identities=16% Similarity=0.293 Sum_probs=56.6
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCC-----CCCC-CCCHHHHHCCCCEEEEEE
Q ss_conf 7999899-87799999999838997899999648980204553666087546-----7545-568578521355047631
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPM-----GIKF-SDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~-----~v~i-~~dl~~~~~~~DViIDFT 79 (280)
||.|.|+ |=.|+.+++.+.++.+.++++. ++...+ .+...+.+.. ++.. .+.++..++++|+|+-+.
T Consensus 3 kILVTGgaGFIGs~Lv~~Ll~~~~~~V~~~-d~~~~~-----~~~~~~~~~~~~~~gDi~~~~~~~~~~~~~~D~V~HlA 76 (347)
T PRK11908 3 KVLILGVNGFIGHHLTKRILETTDWEVYGM-DMQTDR-----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVVLPLV 76 (347)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCC-----HHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEH
T ss_conf 899975743899999999998289789999-799763-----67755799859997754469999997660598897520
Q ss_pred ----------CC--------CHHHHHHHHHHHCCCEEEEEECC
Q ss_conf ----------01--------02478887643237215765022
Q gi|254780279|r 80 ----------SP--------ALTLQSLNISAQHNIVHIIGTTG 104 (280)
Q Consensus 80 ----------~P--------~~~~~~~~~a~~~g~~vViGTTG 104 (280)
.| .++.+.++.|.++++.+|..+|.
T Consensus 77 a~~~~~~~~~~p~~~~~~nv~~t~~ll~~~~~~~~r~if~SS~ 119 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred HCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf 0036488886889999999999999999999739838962661
No 163
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.07 E-value=0.047 Score=34.21 Aligned_cols=123 Identities=21% Similarity=0.276 Sum_probs=63.9
Q ss_pred EEEECC-CHHHHHHHHHHHHCCC---CEEEEEEECCCCHHHC--CCHHHHCCC-CCCCCCCCCCHHHHHCCCCEEEEE-E
Q ss_conf 999899-8779999999983899---7899999648980204--553666087-546754556857852135504763-1
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPS---ITLHSIIVRSGSPLIG--QDVGNFVGI-SPMGIKFSDNLAMAIQSVDGIIDF-S 79 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~---~eLv~~i~~~~~~~~g--~d~~~~~~~-~~~~v~i~~dl~~~~~~~DViIDF-T 79 (280)
|+|+|+ |+.|..++-.+..... -|| ..+|.++....| .|+...... ....+.+.++..+.++++|+||=- .
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el-~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~~~~~~daDvVVitag 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIEL-VLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEE-EEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEECC
T ss_conf 98987797799999999982899999889-99958987208799999854523578739974873898379989999057
Q ss_pred CCCHH-HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf 01024-7888764323721576502223135899987403555210000115689999999999
Q gi|254780279|r 80 SPALT-LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETA 142 (280)
Q Consensus 80 ~P~~~-~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~ 142 (280)
.|.-- .... -.++.+.+++ .+..+.+++++.+.-++...|- ++++..++.+.
T Consensus 80 ~~~k~g~~R~-dll~~N~~I~-------~~i~~~i~~~~p~a~iivvtNP---vdv~t~~~~~~ 132 (263)
T cd00650 80 VGRKPGMGRL-DLLKRNVPIV-------KEIGDNIEKYSPDAWIIVVSNP---VDIITYLVWRY 132 (263)
T ss_pred CCCCCCCCHH-HHHHCHHHHH-------HHHHHHHHHCCCCCEEEECCCC---HHHHHHHHHHH
T ss_conf 7889998765-6640328899-------9998888732998369973894---89999999983
No 164
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.06 E-value=0.066 Score=33.19 Aligned_cols=149 Identities=13% Similarity=0.208 Sum_probs=87.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH---CCCCEEEEEE-
Q ss_conf 73799989987799999999838-997899999648980204553666087546754556857852---1355047631-
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI---QSVDGIIDFS- 79 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~---~~~DViIDFT- 79 (280)
.|||+++..|+-|....+.+... -.-+++++.+.+ ..++.+ .++.++.+ ..+|++|-++
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~P------e~~~~f----------ie~P~~~Lp~~~e~Di~va~~l 64 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKGFKNQFVAVKEYP------EELPDF----------IEEPEDLLPKLPEADIVVAYGL 64 (224)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEECC------CCCCCH----------HHCHHHHCCCCCCCCEEEEECC
T ss_conf 928999960620489987676521553158987366------325300----------1277976678888778999514
Q ss_pred CCCHHHHHHHHHHHCCCEEEE-EECCCCHHHHHHHHHHHCCCC---------CEECCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 010247888764323721576-502223135899987403555---------2100001156899999999999861156
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHII-GTTGFSVKENEVISSFARNAP---------IVKSSNMSLGINFLGFLVETAAEYLLPA 149 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vVi-GTTG~~~e~~~~l~~~s~~~~---------il~apN~SiGv~ll~~l~~~~a~~l~~~ 149 (280)
+|+.++...+.+.+.++..|| ++. =.+--.++|++.+.+-+ +-.-||- ---+.+++....+
T Consensus 65 HPDl~~~L~e~~~~~~~~alIvp~~-~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~---~p~i~~F~e~FG~----- 135 (224)
T COG1810 65 HPDLLLALPEKAAEGGVKALIVPAE-PPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNE---NPHIDEFAERFGK----- 135 (224)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECC-CCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCC---CHHHHHHHHHCCC-----
T ss_conf 8507899999998579617998457-973489999987422360553687655678888---8579999997199-----
Q ss_pred CCCHHHH-----HHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6600899-----998641678998678999999998
Q gi|254780279|r 150 KDWDFEI-----LEMHHRRKLDSPSGTALLLGEAIA 180 (280)
Q Consensus 150 ~~~dieI-----~E~HH~~K~DaPSGTA~~la~~i~ 180 (280)
+...+++ ... .=++.||-|.+.-.|+.+.
T Consensus 136 P~vevev~~~~i~~V--~V~RsaPCGsT~~vAk~l~ 169 (224)
T COG1810 136 PEVEVEVENGKIKDV--DVLRSAPCGSTWYVAKRLV 169 (224)
T ss_pred CEEEEEECCCEEEEE--EEEECCCCCHHHHHHHHHC
T ss_conf 559999639918999--8873488720999999843
No 165
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.04 E-value=0.037 Score=34.91 Aligned_cols=93 Identities=15% Similarity=0.267 Sum_probs=55.0
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC--CCCCCCCCCHHHHHCCCCEEEEEEC--
Q ss_conf 37999899-877999999998389978999996489802045536660875--4675455685785213550476310--
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS--PMGIKFSDNLAMAIQSVDGIIDFSS-- 80 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~--~~~v~i~~dl~~~~~~~DViIDFT~-- 80 (280)
|||.|.|+ |-.|+.+++.+.+. +.++.+ ++|...+... +.. .+.. ..++.-.+.+.++++.+|+||-+..
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~-G~~V~~-l~r~~~~~~~--~~~-~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLER-GEEVRV-LVRPTSDRRN--LEG-LDVEIVEGDLRDPASLRKALAGCRALFHVAADY 75 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEE-EECCCCCHHH--HCC-CCCEEEEEECCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 94999867779999999999978-498999-9899986556--521-797799820799999999971785897613423
Q ss_pred ------C--------CHHHHHHHHHHHCCCE-EEEEEC
Q ss_conf ------1--------0247888764323721-576502
Q gi|254780279|r 81 ------P--------ALTLQSLNISAQHNIV-HIIGTT 103 (280)
Q Consensus 81 ------P--------~~~~~~~~~a~~~g~~-vViGTT 103 (280)
| ..+.+.++.|.++++. +|.-+|
T Consensus 76 ~~~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~SS 113 (328)
T TIGR03466 76 RLWAPDPEEMYRANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 44679989999999999999999999729874315633
No 166
>PRK10083 putative dehydrogenase; Provisional
Probab=95.98 E-value=0.039 Score=34.73 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=66.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC----CCCEEEEEE-CC
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521----355047631-01
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ----SVDGIIDFS-SP 81 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~----~~DViIDFT-~P 81 (280)
+|.|+|+|-+|...++.+++..+..-+.++++.+.+. +.....|....--.-.+++.+.+. .+|++||++ .|
T Consensus 163 ~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl---~~A~~~GAd~vi~~~~~~~~~~~~~~G~~~dvvid~~g~~ 239 (339)
T PRK10083 163 VALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERL---ALAKESGADWVINNAQESLAEALAEKGVKPTLIFDAACHP 239 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHH---HHHHHCCCCEEECCCCCCHHHHHHHCCCCCCEEEECCCCH
T ss_conf 8999587659999999999856997899937989999---9999719989984887669999985399961999666688
Q ss_pred CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 02478887643237215765022231358999874035552100001156899999999999
Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280)
Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280)
......++.+...|+-+++|..+- +.++....-..+++.+. ...+ ...-+.++++.++
T Consensus 240 ~~~~~a~~~~~~gG~iv~~G~~~~-~~~i~~~~~~~k~l~i~-gs~~--~~~~~~~~~~li~ 297 (339)
T PRK10083 240 SILEEAVTLASPAARIVLMGFSSE-PSEIVQQGITGKELTIY-SSRL--NANKFPVVIDWLA 297 (339)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCC-CCCCCHHHHHHCEEEEE-ECCC--CHHHHHHHHHHHH
T ss_conf 999999998518809999925899-87536888742678999-9226--8889999999998
No 167
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.97 E-value=0.04 Score=34.71 Aligned_cols=130 Identities=17% Similarity=0.110 Sum_probs=74.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH---H---CCCCEEEEEE-
Q ss_conf 79998998779999999983899789999964898020455366608754675455685785---2---1355047631-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA---I---QSVDGIIDFS- 79 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~---~---~~~DViIDFT- 79 (280)
+|+|+|+|-+|-..+.... ..+..-+.++++.+.+. +.....|.... +. .++..+. . ..+|++||++
T Consensus 123 ~V~V~G~G~iGl~~~~~a~-~~Ga~~Vi~~d~~~~rl---~~a~~~Ga~~~-i~-~~~~~~~~~~~~~g~g~D~vie~~G 196 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAA-AAGAARVVAADPSPDRR---ELALSFGATAL-AE-PEVLAERQGGLQNGRGVDVALEFSG 196 (280)
T ss_pred EEEEEECCHHHHHHHHHHH-HCCCCEEEEEECCHHHH---HHHHHCCCCEE-EC-CCCHHHHHHHHHCCCCCCEEEECCC
T ss_conf 8999907868999999999-84998799991998999---99997399898-37-7577999999727888709998789
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 010247888764323721576502223-13589998740355521000011568999999999998
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFS-VKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAE 144 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~-~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~ 144 (280)
.|.+...-++.+...|+-+.+|...-+ +-.+..-.-..+++.|.-+.+++.-- +.+.++.+++
T Consensus 197 ~~~~~~~a~~~l~~gG~iv~vG~~~~~~~~~~~~~~l~~ke~~i~Gs~~~~~~~--~~~ai~ll~~ 260 (280)
T TIGR03366 197 ATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYEPRH--LDQAVRFLAA 260 (280)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECHHHHHHCCEEEEEEECCCHHH--HHHHHHHHHH
T ss_conf 889999999986049899998046899841478999986987999960689899--9999999997
No 168
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=95.94 E-value=0.039 Score=34.76 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=88.3
Q ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CCCHHHHHH
Q ss_conf 9899877999999998389978999996489802045536660875467545568578521355047631-010247888
Q gi|254780279|r 10 VLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SPALTLQSL 88 (280)
Q Consensus 10 I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P~~~~~~~ 88 (280)
|+-.|+-|..+++.+.+..++.++ .++.++ ++++++.... +-+. -+.++|++|.++ +|+.+++..
T Consensus 2 vi~~G~yGeR~~~~i~~~~~~~v~-~~~~pe------~l~e~Ie~pe------e~Lp-~~~~~Dl~i~y~lhPDl~~~l~ 67 (215)
T pfam02593 2 VLYDGQYGERAVENILNYFDFCVI-VLEYPE------ELPEFIEDPE------EYLP-EIPEADLVIAYGLHPDLTLELA 67 (215)
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEE-EEECCC------CCCCCCCCHH------HHCC-CCCCCCEEEEECCCCCHHHHHH
T ss_conf 140373028999999864894299-961776------4643236878------8656-6778768999435950799999
Q ss_pred HHHHHCCCEEEEEECCCCHHH-HHHHHHHHCCCC-CEECCCH--HH---HHHHHHHHHHHHHHHHCCCCCCHHHHHH---
Q ss_conf 764323721576502223135-899987403555-2100001--15---6899999999999861156660089999---
Q gi|254780279|r 89 NISAQHNIVHIIGTTGFSVKE-NEVISSFARNAP-IVKSSNM--SL---GINFLGFLVETAAEYLLPAKDWDFEILE--- 158 (280)
Q Consensus 89 ~~a~~~g~~vViGTTG~~~e~-~~~l~~~s~~~~-il~apN~--Si---Gv~ll~~l~~~~a~~l~~~~~~dieI~E--- 158 (280)
+.|.+.|+..||.- +|+.+. .+.|++.+++-. -+..|.. |+ +--.+..+++ +|- .+...|++-+
T Consensus 68 ~~~~e~g~kalIvp-~~~~~g~~~~lk~~~e~~g~~~~~P~~~CsL~~~~~p~i~~F~~----~FG-~P~~ev~v~~~~I 141 (215)
T pfam02593 68 EIAAETGIKALIVP-AEAPKGLRKGLKEQLEEFGVEVEFPEPFCSLEPVGNPVIDEFAE----RFG-RPELEVEVEDGKI 141 (215)
T ss_pred HHHHHCCCCEEEEE-CCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHH----HHC-CCEEEEEECCCEE
T ss_conf 99986499889974-68862128999999997597387787655788988866999999----819-9669999749949
Q ss_pred HHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 8641678998678999999998
Q gi|254780279|r 159 MHHRRKLDSPSGTALLLGEAIA 180 (280)
Q Consensus 159 ~HH~~K~DaPSGTA~~la~~i~ 180 (280)
..=+=+++||-|..-..|+.+.
T Consensus 142 ~~V~VlR~aPCGsT~~vAk~l~ 163 (215)
T pfam02593 142 KDVRVLRGAPCGSTWFVAKELR 163 (215)
T ss_pred EEEEEEECCCCCCHHHHHHHHC
T ss_conf 9998984789863999999816
No 169
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.94 E-value=0.093 Score=32.19 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=65.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH--
Q ss_conf 799989987799999999838997899999648980204553666087546754556857852135504763101024--
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT-- 84 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~-- 84 (280)
||+|+|.|+-|+++++.+. ..+.++. ++|.+.... .+.... ........+..+.+..+|+|| .+|..-
T Consensus 14 ~V~V~GlG~sG~a~a~~L~-~~G~~v~-~~D~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~d~vV--~SPGI~~~ 83 (487)
T PRK03369 14 PVLVAGAGVTGRAVLAALT-RFGARPT-VCDDDPDAL-----RPHAER-GVATVSSSDAVQQIADYALVV--TSPGFPPT 83 (487)
T ss_pred EEEEEEECHHHHHHHHHHH-HCCCEEE-EEECCCHHH-----HHHHHC-CCCEECCCCCHHHHCCCCEEE--ECCCCCCC
T ss_conf 8999915683899999999-7869799-998982577-----999865-994863762265646778899--89957998
Q ss_pred HHHHHHHHHCCCEE------------------------EEEECCCCHHHHHHHHHHHC--CCCCEECCCHHHHHHHHHH
Q ss_conf 78887643237215------------------------76502223135899987403--5552100001156899999
Q gi|254780279|r 85 LQSLNISAQHNIVH------------------------IIGTTGFSVKENEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280)
Q Consensus 85 ~~~~~~a~~~g~~v------------------------ViGTTG~~~e~~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280)
.+.+..|.+.|+|+ |.||-|=|.-. ..+..+-+ ..+.+.+.| ||..++..
T Consensus 84 ~p~l~~a~~~gi~i~~eieL~~~~~~~~~~~~~~~~IaVTGTnGKTTtt-sli~~iL~~~g~~~~~~GN--iG~p~~~~ 159 (487)
T PRK03369 84 APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTT-SMLHAMLRAAGRRSVLCGN--IGSPVLDV 159 (487)
T ss_pred CHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH-HHHHHHHHHCCCCEEEEEC--CCHHHHHH
T ss_conf 9999999988990765999999987444336766559997988727899-9999999858998599813--66576641
No 170
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.011 Score=38.54 Aligned_cols=97 Identities=24% Similarity=0.347 Sum_probs=57.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---------CCCHHHHCCC---C-------CCC---CCCCC
Q ss_conf 379998998779999999983899789999964898020---------4553666087---5-------467---54556
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI---------GQDVGNFVGI---S-------PMG---IKFSD 63 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~---------g~d~~~~~~~---~-------~~~---v~i~~ 63 (280)
|+++++|-||||..++..+. +.+.++|+ +|++..... ...+.++... + +.+ -.+.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~-~~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~ 78 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLL-DGGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID 78 (300)
T ss_pred CCCEEECCCHHHHHHHHHHH-HCCCEEEE-ECCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHH
T ss_conf 90115400052699999998-38972899-73888999999865775436799999746987479997337773689999
Q ss_pred CHHHHHCCCCEEEEEEC--CCHHHHHHHHHHHCCCEEEE-EECC
Q ss_conf 85785213550476310--10247888764323721576-5022
Q gi|254780279|r 64 NLAMAIQSVDGIIDFSS--PALTLQSLNISAQHNIVHII-GTTG 104 (280)
Q Consensus 64 dl~~~~~~~DViIDFT~--P~~~~~~~~~a~~~g~~vVi-GTTG 104 (280)
++...++.-|+|||=-+ =.-+....+.+.+.+++++= ||+|
T Consensus 79 ~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 79 DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 98853678888987886325778999998876597178346777
No 171
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.87 E-value=0.021 Score=36.58 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=60.8
Q ss_pred EEEEECCCHHHHHHHHHHH-HCCCCEEEEEEECCCCHHHCCCHHHHC-CCCC--CCCCCCCCHHHHHCCCCEEEEEEC--
Q ss_conf 7999899877999999998-389978999996489802045536660-8754--675455685785213550476310--
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIH-NNPSITLHSIIVRSGSPLIGQDVGNFV-GISP--MGIKFSDNLAMAIQSVDGIIDFSS-- 80 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~-~~~~~eLv~~i~~~~~~~~g~d~~~~~-~~~~--~~v~i~~dl~~~~~~~DViIDFT~-- 80 (280)
.++|+|+|.+++..++.+. ..++++-+-+++|..... ....+.. ..-+ ..+.+.++.++++..+|||+-.|+
T Consensus 157 ~lgiIG~G~qAr~~l~Al~~vrp~i~~V~V~~r~~~~a--~~fa~~~~~~~~~~~~v~~~~s~eeav~~aDIVvtaTs~~ 234 (379)
T PRK06199 157 VVGLVGPGVMGKTIVAAFMAVCPGIDTIKIKGRSQKSL--DAFATWVAETYPQITEVVVVDSEEEVVRGSDIVTYCTSGE 234 (379)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH--HHHHHHHHHHCCCCCEEEEECCHHHHHHCCCEEEECCCCC
T ss_conf 89998963999999999998617888899988999999--9999999976688850898299999973799999777788
Q ss_pred ---CCHHHHHHHHHHHCCCEEE
Q ss_conf ---1024788876432372157
Q gi|254780279|r 81 ---PALTLQSLNISAQHNIVHI 99 (280)
Q Consensus 81 ---P~~~~~~~~~a~~~g~~vV 99 (280)
|+...-.-...++-|.++.
T Consensus 235 ~~~ps~~P~~~~~wlkpGahv~ 256 (379)
T PRK06199 235 AGDPSAYPYVKREWVKPGAFLL 256 (379)
T ss_pred CCCCCCCCEECHHHCCCCCEEE
T ss_conf 7777778474599959998894
No 172
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.86 E-value=0.091 Score=32.25 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=36.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
+||+.+|.|.||.-.+..+.+. ++++ .+++|+..+... . ....|.....+..++...+||||
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G~~v-~v~~r~~~ka~~-~------~~~~Ga~~a~s~~eaa~~aDvVi 62 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-GHEV-TVYNRTPEKAAE-L------LAAAGATVAASPAEAAAEADVVI 62 (286)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEE-EEEECCHHHHHH-H------HHHCCCEECCCHHHHHHHCCEEE
T ss_conf 9079985735259999999977-9878-998088566568-9------99729800388999996199899
No 173
>KOG2380 consensus
Probab=95.85 E-value=0.08 Score=32.64 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=44.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH-CCCCEEEEEECCC
Q ss_conf 873799989987799999999838997899999648980204553666087546754556857852-1355047631010
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI-QSVDGIIDFSSPA 82 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~-~~~DViIDFT~P~ 82 (280)
++.+|||+|.|.|||.+++.+.. .++.|. .++|++.. ++.+. .|....+++.... ..+|||+-+|...
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~-aGh~li-~hsRsdys----saa~~-----yg~~~ft~lhdlcerhpDvvLlctsil 119 (480)
T KOG2380 51 ATLVIAIIGFGNMGQFLAETLID-AGHGLI-CHSRSDYS----SAAEK-----YGSAKFTLLHDLCERHPDVVLLCTSIL 119 (480)
T ss_pred CCEEEEEEECCCHHHHHHHHHHH-CCCEEE-ECCCCHHH----HHHHH-----HCCCCCCCHHHHHHCCCCEEEEEEHHH
T ss_conf 64489997137088999999986-486267-44750068----99997-----412334617778754899799970254
Q ss_pred HHHHHHH
Q ss_conf 2478887
Q gi|254780279|r 83 LTLQSLN 89 (280)
Q Consensus 83 ~~~~~~~ 89 (280)
....+++
T Consensus 120 siekila 126 (480)
T KOG2380 120 SIEKILA 126 (480)
T ss_pred HHHHHHH
T ss_conf 0998998
No 174
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.83 E-value=0.18 Score=30.16 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=83.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-CCCHH--HHH-----CCCC-EE
Q ss_conf 737999899877999999998389978999996489802045536660875467545-56857--852-----1355-04
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-SDNLA--MAI-----QSVD-GI 75 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~~dl~--~~~-----~~~D-Vi 75 (280)
+.+|.|+|+||.||.+.+.+.. .+...+ ++|.+.. ......+.|.++ +.|.. +.+ +++. +|
T Consensus 399 ~~~VII~G~GRvGq~var~L~~-~gi~~v-viD~d~~--------~V~~~r~~G~~v~yGDat~~~vL~~AGi~~Ar~vV 468 (615)
T PRK03562 399 QPRVIIAGFGRFGQIVGRLLLS-SGVKMV-VLDHDPD--------HIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLI 468 (615)
T ss_pred CCCEEEEECCCCHHHHHHHHHH-CCCCEE-EEECCHH--------HHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEE
T ss_conf 9998999028046999999997-899879-9979999--------99999967990897689999999867914068899
Q ss_pred EEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHH-------HHHHHHCC
Q ss_conf 76310102478887643237215765022231358999874035552100001156899999999-------99986115
Q gi|254780279|r 76 IDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVE-------TAAEYLLP 148 (280)
Q Consensus 76 IDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~-------~~a~~l~~ 148 (280)
|-+..|+.+...++.+.++.-.+-|=.--.+..+...|.++.- .-++...|-=+..+-.+.++ ++-+....
T Consensus 469 iaidd~~~~~~iv~~~r~~~P~l~IiaRard~~~~~~L~~~Ga--~~vv~Et~essL~l~~~~L~~lG~~~~~a~~~~~~ 546 (615)
T PRK03562 469 NAIDDPQTNLQLTELVKEHFPHLQIIARARDVDHYIRLRQAGV--EKPERETFEGALKSGRLALESLGLGPYEARERADR 546 (615)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCC--CEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9949899999999999975899869998397788999997899--98966658999999999999809999999999999
Q ss_pred CCCCHHHHHHHHHHCCCCCCC
Q ss_conf 666008999986416789986
Q gi|254780279|r 149 AKDWDFEILEMHHRRKLDSPS 169 (280)
Q Consensus 149 ~~~~dieI~E~HH~~K~DaPS 169 (280)
+..+|-+..+.-+++..|...
T Consensus 547 fr~~d~~~l~~~~~~~~d~~~ 567 (615)
T PRK03562 547 FRRFNIQMVEEMAPHENDTKK 567 (615)
T ss_pred HHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999999998643578799
No 175
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=95.81 E-value=0.048 Score=34.16 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=49.8
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCCCCHHHHHCCCCEEEEEECCC--
Q ss_conf 999899-8779999999983899789999964898020455366608754--67545568578521355047631010--
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFSDNLAMAIQSVDGIIDFSSPA-- 82 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~~dl~~~~~~~DViIDFT~P~-- 82 (280)
|.|.|+ |..|+.+++.+.+ .++++.+ +.|+.++...+.+.. .+..- .+..-.+++..+++.+|+++-.+.+.
T Consensus 1 IlV~GatG~iG~~vv~~L~~-~g~~Vr~-l~R~~~~~~~~~l~~-~gve~v~gD~~d~~sl~~al~gvd~v~~~~~~~~~ 77 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLK-AGHPVRA-LVRDPKSELAKSLKA-AGVELVEGDLDDHESLVEALKGVDVVFSVTGFWLS 77 (232)
T ss_pred EEEECCCHHHHHHHHHHHHH-CCCCEEE-EECCCCHHHHHHHHH-CCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 09989682899999999985-8993899-971873665666641-79889990688878999996799889991588741
Q ss_pred ----HHHHHHHHHHHCCCEEEEE
Q ss_conf ----2478887643237215765
Q gi|254780279|r 83 ----LTLQSLNISAQHNIVHIIG 101 (280)
Q Consensus 83 ----~~~~~~~~a~~~g~~vViG 101 (280)
.....++.|.+.|+..++=
T Consensus 78 ~~~~~~~~~~~AA~~aGVk~~V~ 100 (232)
T pfam05368 78 KEIEDGKKLADAAKEAGVKHFIP 100 (232)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 77999999999999739983455
No 176
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424 This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process.
Probab=95.78 E-value=0.011 Score=38.63 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=50.3
Q ss_pred EEEEECCCHHHHHHHHHHHHC----CCCEE-EEEEEC-CCCHHHCCCHH--HHCC-------CCCCCCCCCCCH-----H
Q ss_conf 799989987799999999838----99789-999964-89802045536--6608-------754675455685-----7
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNN----PSITL-HSIIVR-SGSPLIGQDVG--NFVG-------ISPMGIKFSDNL-----A 66 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~----~~~eL-v~~i~~-~~~~~~g~d~~--~~~~-------~~~~~v~i~~dl-----~ 66 (280)
||||.|+||+||.+.+.+.+. +++++ +++=|. .+......=+- ...| .-+..+.+.++- .
T Consensus 1 kvgINGFGRIGRlvlR~~~~~~~~g~~~~viv~inD~~~~~~~~ayLlkyDSvhG~~~y~~~~f~~~v~~~~~~~~~~~~ 80 (366)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGSGLDLEVIVAINDLSTDLEKLAYLLKYDSVHGRLAYLYFRFEGEVTVDEDKAEKTNG 80 (366)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHEECCCCCEEEEEECCCCCCCE
T ss_conf 93651478589999999850578897058998314887688999988641235587110312788528883034367416
Q ss_pred HHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 85213550476310102478887643237215765022231
Q gi|254780279|r 67 MAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSV 107 (280)
Q Consensus 67 ~~~~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280)
..++.-|..+-+ .-+.-.+.+.|-.+.++-+|+=-||+--
T Consensus 81 l~v~g~~~~~~~-~~~~~P~~lpWt~~~~vD~V~EcTG~f~ 120 (366)
T TIGR01534 81 LVVNGKVKVIVV-ASERDPSDLPWTKALGVDIVIECTGKFR 120 (366)
T ss_pred EEECCCEEEEEE-EECCCHHHCCCHHHHCCEEEEECCCCCC
T ss_conf 888680457887-4047853778712607328995887502
No 177
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.77 E-value=0.043 Score=34.45 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=55.7
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCC---HHHHCCCCC-CCCCCCCCHHHHHCCCCEEE
Q ss_conf 99887379998998779999999983899789999964898020455---366608754-67545568578521355047
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQD---VGNFVGISP-MGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d---~~~~~~~~~-~~v~i~~dl~~~~~~~DViI 76 (280)
|..+++||+|+|+|-||..+...+.+. +.++..+ .|.....+.++ +....+... ..+.++++.++ +.++|++|
T Consensus 1 M~~~~~kI~IiGaGAiG~~~a~~L~~a-G~~V~li-~r~~~~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~-~~~~D~vi 77 (313)
T PRK06249 1 MDSETPRIAIIGTGAIGGFYGAMLARA-GFDVHFL-LRSDYEAVRENGLQVDSVHGDFHLPQVQAYRSAED-MPPCDWVL 77 (313)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCCEEEE-ECCHHHHHHHCCEEEEECCCCEEECCCEEECCHHH-CCCCCEEE
T ss_conf 999988899999149999999999966-9956999-67559999868859996698289768402369778-39965899
Q ss_pred EEECCC---HHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 631010---2478887643237215765022231
Q gi|254780279|r 77 DFSSPA---LTLQSLNISAQHNIVHIIGTTGFSV 107 (280)
Q Consensus 77 DFT~P~---~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280)
-++--- ...+.++-.+..+..+|.---|+..
T Consensus 78 v~vKs~~~~~~~~~l~~~~~~~t~il~lQNG~g~ 111 (313)
T PRK06249 78 VGLKTTANALLAPLIPQVAAPGAKVLLLQNGLGV 111 (313)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 9536677899999878644899589994476661
No 178
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.72 E-value=0.13 Score=31.11 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=40.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCCCC--CCCCHHHHHCCCCEEE
Q ss_conf 799989987799999999838997899999648980204--553666087546754--5568578521355047
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMGIK--FSDNLAMAIQSVDGII 76 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~v~--i~~dl~~~~~~~DViI 76 (280)
||+|+|+|+.|..++-.+....-.+ ...+|..+....| .|+............ -++|.+ .+.++||||
T Consensus 3 KV~IIGaG~VG~~~A~~l~~~~~~e-ivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~dy~-~~~daDiVV 74 (313)
T PTZ00117 3 KISIIGSGQIGAIVGLLLLQENLGD-VYLYDVIEGVPQGKALDLKHFSTIIGVNANILGTNNYE-DIKDSDVIV 74 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCE-EEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHH-HHCCCCEEE
T ss_conf 8999897989999999997089987-99995889830889988772420368985798379999-968999999
No 179
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.69 E-value=0.14 Score=30.97 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=66.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC----------CHHHCCCHHHHCCCCCC-C-CCCCCCHHHHHCCCC
Q ss_conf 37999899877999999998389978999996489----------80204553666087546-7-545568578521355
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG----------SPLIGQDVGNFVGISPM-G-IKFSDNLAMAIQSVD 73 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~----------~~~~g~d~~~~~~~~~~-~-v~i~~dl~~~~~~~D 73 (280)
|||.|+|.|-.|-... .+...-+.+++++ |.+. +|....-+.++...... + ...+.|.+++++++|
T Consensus 1 MkI~viGtGYVGLv~g-~~lA~~GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTG-ACLAELGHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CCEEEECCCHHHHHHH-HHHHHCCCEEEEE-ECCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHHHHHCCC
T ss_conf 9158988855688789-9998709848999-5788999998679999767058999984623572798747888962597
Q ss_pred EEEEEE-CCCH---H--HHHHHH-------HHHCCCEEEEEEC---CCCHHHHHHHHHHHC--CCCCEECCCH
Q ss_conf 047631-0102---4--788876-------4323721576502---223135899987403--5552100001
Q gi|254780279|r 74 GIIDFS-SPAL---T--LQSLNI-------SAQHNIVHIIGTT---GFSVKENEVISSFAR--NAPIVKSSNM 128 (280)
Q Consensus 74 ViIDFT-~P~~---~--~~~~~~-------a~~~g~~vViGTT---G~~~e~~~~l~~~s~--~~~il~apN~ 128 (280)
+++=.+ +|.. . ..+++. ++....-+|+=+| |++++-.+.+..... ...|+..|-|
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEECCHHH
T ss_conf 7999748999988973289999999999862678739998488798846999999986346777507618678
No 180
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.071 Score=32.97 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=62.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC--CCHHHHHCCCCEEEEEECCCHH
Q ss_conf 79998998779999999983899789999964898020455366608754675455--6857852135504763101024
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS--DNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~--~dl~~~~~~~DViIDFT~P~~~ 84 (280)
||+|+|.|+-|+++++.+.+ .+.++. ++|.+...........+ ...++.+. .+..+.+.++|+|| .+|...
T Consensus 16 kv~i~GlG~sG~a~a~~L~~-~g~~v~-~~D~~~~~~~~~~~~~l---~~~gi~~~~g~~~~~~~~~~d~vv--~SPgI~ 88 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVK-LGAKVT-AFDKKSEEELGEISLEL---KEKGVNLELGENYLDKLTGFDVIF--KTPSMR 88 (458)
T ss_pred EEEEEEECHHHHHHHHHHHH-CCCEEE-EEECCCCHHHHHHHHHH---HHCCCEEEECCCHHHHCCCCCEEE--ECCCCC
T ss_conf 69999787889999999997-889799-99898843148999999---857998995784054237888899--899879
Q ss_pred --HHHHHHHHHCCCEEE--------------EEECCCCHH--HHHHHHHHHC--CCCCEECCCHHHHHHHHHH
Q ss_conf --788876432372157--------------650222313--5899987403--5552100001156899999
Q gi|254780279|r 85 --LQSLNISAQHNIVHI--------------IGTTGFSVK--ENEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280)
Q Consensus 85 --~~~~~~a~~~g~~vV--------------iGTTG~~~e--~~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280)
.+.+..|.++|++++ ||.||=.-+ .-..+..+-+ ...++.+.| +|..++..
T Consensus 89 ~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~~gGN--iG~p~~~~ 159 (458)
T PRK01710 89 IDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGITGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFSN 159 (458)
T ss_pred CCCHHHHHHHHCCCCEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCHHHHH
T ss_conf 989999999987993740999998637587799936898478999999999984997585166--26446888
No 181
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.69 E-value=0.15 Score=30.68 Aligned_cols=116 Identities=18% Similarity=0.100 Sum_probs=68.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHH---HHH--CCCCEEEEEE-
Q ss_conf 79998998779999999983899789999964898020455366608754675455-6857---852--1355047631-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLA---MAI--QSVDGIIDFS- 79 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~---~~~--~~~DViIDFT- 79 (280)
+|+|+|+|-+|-..+.. ++.-+..-+-++|+.+.+..- +.+..+.......-. +... +.. ..+|++||+|
T Consensus 171 ~V~V~GaGpIGLla~~~-a~~~Ga~~Viv~d~~~~Rl~~--A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIAL-AKLLGASVVIVVDRSPERLEL--AKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred EEEEECCCHHHHHHHHH-HHHCCCCEEEEECCCHHHHHH--HHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 89998888999999999-987698279997999899999--998779718724630147889998608987999999989
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC
Q ss_conf 0102478887643237215765022231358999874035552100
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKS 125 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a 125 (280)
+|.+....++.+...|.-+++|++|-.......-.-..++..+.-+
T Consensus 248 ~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~g~ 293 (350)
T COG1063 248 SPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGS 293 (350)
T ss_pred CHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCEEEECC
T ss_conf 9799999999602598999995158866656888997535089734
No 182
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.67 E-value=0.044 Score=34.41 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-C-CCHHHHHCCCCEEEEEECCCH
Q ss_conf 37999899877999999998389978999996489802045536660875467545-5-685785213550476310102
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-S-DNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~-~dl~~~~~~~DViIDFT~P~~ 83 (280)
=||.|+|.|+-|.++++.+.+ .+.++.+ .|.+..+. ....+.... .++.+ . ......++.+|+|| .+|..
T Consensus 8 k~vlV~GlG~sG~a~a~~L~~-~G~~V~~-~D~~~~~~---~~~~l~~~~-~~~~~~~g~~~~~~~~~~d~vV--~SPGI 79 (501)
T PRK02006 8 PMVLVLGLGESGLAMARWCAR-HGCRLRV-ADTREAPP---NLAALQAEG-IDAEFVGGAFDPALLDGVELVA--LSPGL 79 (501)
T ss_pred CEEEEEEECHHHHHHHHHHHH-CCCEEEE-EECCCCCC---CHHHHHHCC-CCCEEECCCCCHHHHCCCCEEE--ECCEE
T ss_conf 839998336889999999997-8984999-98999986---199998608-9818977889867846899999--89900
Q ss_pred ------HHHHHHHHHHCCCEE-----------------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHH
Q ss_conf ------478887643237215-----------------------76502223135--8999874035--55210000115
Q gi|254780279|r 84 ------TLQSLNISAQHNIVH-----------------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSL 130 (280)
Q Consensus 84 ------~~~~~~~a~~~g~~v-----------------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~Si 130 (280)
..+.+..|.+.|+|+ |||.||=+-+. -..+..+.+. ..+..+.|.
T Consensus 80 ~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~~GNI-- 157 (501)
T PRK02006 80 SPLEPALAALLAAARERGIPVWGELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKVAVAGNI-- 157 (501)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCC--
T ss_conf 888854319999999879958768999998876302223568748999389966879999999999769974652564--
Q ss_pred HHHHHHHH
Q ss_conf 68999999
Q gi|254780279|r 131 GINFLGFL 138 (280)
Q Consensus 131 Gv~ll~~l 138 (280)
|..++..+
T Consensus 158 G~p~l~~l 165 (501)
T PRK02006 158 SPAALDKL 165 (501)
T ss_pred CCHHHHHH
T ss_conf 61026778
No 183
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase; InterPro: IPR006422 This group of sequences represent the small clade of dehydrogenases in gamma-proteobacteria which utilise NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose . This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. It is possible that some of the GAPDH enzymes may prove to be bifunctional in certain species.; GO: 0016491 oxidoreductase activity, 0051287 NAD binding.
Probab=95.67 E-value=0.0062 Score=40.25 Aligned_cols=203 Identities=15% Similarity=0.161 Sum_probs=97.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCC---CCEEEEEEECCCCHHHC------CCHHHHCC---CCCC------------CCCCC
Q ss_conf 7999899877999999998389---97899999648980204------55366608---7546------------75455
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNP---SITLHSIIVRSGSPLIG------QDVGNFVG---ISPM------------GIKFS 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~---~~eLv~~i~~~~~~~~g------~d~~~~~~---~~~~------------~v~i~ 62 (280)
||||.|+||+||-+++++.+.+ .+++|++=+..+..... ..-|.|.. .... -+.+-
T Consensus 1 RVA~NGfGRIGR~VlRAlyE~g~~~~~~vVA~N~LA~~~~~~~L~~yD~~HGRF~~~v~~d~d~l~v~~~~geyD~i~vL 80 (334)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGKRLEIEVVALNELADQASMAHLLRYDTSHGRFAKEVKVDRDQLYVNDQNGEYDAIRVL 80 (334)
T ss_pred CEEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHEEECCCEEEECCCCCCCCEEEEE
T ss_conf 93340476211000331103887341489985010246899999871677770501200046278883667772047874
Q ss_pred --CCHHHHH----CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHH-------HHHHHCCCCCEECCCH
Q ss_conf --6857852----1355047631010247888764323721576502-223135899-------9874035552100001
Q gi|254780279|r 63 --DNLAMAI----QSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTT-GFSVKENEV-------ISSFARNAPIVKSSNM 128 (280)
Q Consensus 63 --~dl~~~~----~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~~~-------l~~~s~~~~il~apN~ 128 (280)
..++ .+ -.+|+|.|+|---...+..+..+.+|-+.|.=+- |=++.++.. -++++.+-.++ +|-
T Consensus 81 ~~~~~~-~l~W~~L~VDlVL~C~G~Y~~r~~g~~~~~AGA~~VLFS~P~ase~DlDaTivYGVN~~~L~a~~~~V--SNa 157 (334)
T TIGR01532 81 HSSELE-ALPWRELGVDLVLDCTGVYGSREQGERHIRAGAKRVLFSHPGASEADLDATIVYGVNQEDLSAEHKIV--SNA 157 (334)
T ss_pred CCCCCC-CCCHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEE--ECC
T ss_conf 158866-57813506008994476656668899998738863441388874012664268502110235230367--556
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCC--CCCC
Q ss_conf 1568999999999998611566600899998641678998678999999998532887642211123--57676--5433
Q gi|254780279|r 129 SLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNR--HIQQC--ARTE 204 (280)
Q Consensus 129 SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~--~~~~~--~~~~ 204 (280)
|=.-|=..-++|.+-..+-. + ...|+-+ |..--|.|-=-|-.- +-+...|.-..+=.++.++ .|+.. +.-.
T Consensus 158 SCTTNC~vP~~KlL~~A~G~-e--~~~iTTI-HSaM~DQ~VIDAYH~-eDLRRTRaA~QSiIPV~T~L~~GI~R~~P~~~ 232 (334)
T TIGR01532 158 SCTTNCIVPLIKLLDDAIGI-E--SGTITTI-HSAMNDQQVIDAYHH-EDLRRTRAASQSIIPVDTKLARGIERLFPEFA 232 (334)
T ss_pred CCCCCCCCHHHHHHHHHCCC-C--CEEEEEE-EECCCCCCEEECCCC-HHHHHHHHHCCCEECCCCCHHHHHHHHHHHHC
T ss_conf 54111011064321012153-3--0146666-403468850223474-01344454412220044531211666404324
Q ss_pred CCCCCEEEECCCC
Q ss_conf 4565013752882
Q gi|254780279|r 205 GSIGIASLRAGSI 217 (280)
Q Consensus 205 ~~I~i~s~R~g~~ 217 (280)
+.+.=-|+|.|.+
T Consensus 233 ~r~~A~avRVPTv 245 (334)
T TIGR01532 233 DRFEAIAVRVPTV 245 (334)
T ss_pred CCEEEEEEECCCC
T ss_conf 7435789852710
No 184
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.64 E-value=0.07 Score=33.04 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=57.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----CCCCC------CCCCC
Q ss_conf 379998998779999999983899789999964898-------------0204553666-----08754------67545
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----VGISP------MGIKF 61 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----~~~~~------~~v~i 61 (280)
-+|.|+|+|-.|..+++.+... ++-=...+|.+.- ..+|+.-.+. ..+.+ ....+
T Consensus 12 s~V~v~G~GGvGs~~a~~Lars-GVG~l~lvD~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~~~~~~ 90 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEEHHHC
T ss_conf 9789988863689999999980-997599971999045444433016563369972899999999879998899862515
Q ss_pred -CCCHHHHHC-CCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEE
Q ss_conf -568578521-355047631-0102478887643237215765
Q gi|254780279|r 62 -SDNLAMAIQ-SVDGIIDFS-SPALTLQSLNISAQHNIVHIIG 101 (280)
Q Consensus 62 -~~dl~~~~~-~~DViIDFT-~P~~~~~~~~~a~~~g~~vViG 101 (280)
.++.++++. .+|+|||.+ +..+-....+.|.++++|+|+.
T Consensus 91 ~~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~~iplIss 133 (231)
T cd00755 91 TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred CHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9989999845477778534424877999999999829908998
No 185
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.58 E-value=0.1 Score=31.92 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=65.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCCC--CCCCCCHHHHHCCCCEEEEE-ECCC
Q ss_conf 99989987799999999838997899999648980204--5536660875467--54556857852135504763-1010
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPMG--IKFSDNLAMAIQSVDGIIDF-SSPA 82 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~~--v~i~~dl~~~~~~~DViIDF-T~P~ 82 (280)
|+|+|+|+.|..++-.+....-.+| ..+|.+.....| .|+.......... +..++|.+ .++++||||=- ..|.
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~el-~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~-~~~daDvvVitaG~~~ 78 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDV-VLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHH-HHCCCCEEEEECCCCC
T ss_conf 9898968889999999985799679-9980999800579887761320158985899478879-9479989999067789
Q ss_pred -HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf -2478887643237215765022231358999874035552100001156899999999999
Q gi|254780279|r 83 -LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAA 143 (280)
Q Consensus 83 -~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a 143 (280)
....-...+ +.+.++ -.+....|.+++-+.-++...|- +++|..++.+.+
T Consensus 79 k~g~tR~dLl-~~N~~I-------~~~i~~~i~~~~p~~i~lvvsNP---vDv~t~~~~k~s 129 (300)
T cd01339 79 KPGMSRDDLL-GTNAKI-------VKEVAENIKKYAPNAIVIVVTNP---LDVMTYVAYKAS 129 (300)
T ss_pred CCCCCHHHHH-HHHHHH-------HHHHHHHHHHHCCCCEEEECCCC---HHHHHHHHHHHH
T ss_conf 9899889999-988999-------99999999965998489982793---899999999972
No 186
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.053 Score=33.84 Aligned_cols=116 Identities=15% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 87379998998779999999983899789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
+.|+|+++|+||+|+...... .+..+++.++..++. .-.+.+.+....++..+.-..+ -.++++ .+.|..
T Consensus 9 a~~~v~~igtGrl~ra~~~ra-~h~~~~cs~i~srS~--~~a~~LaE~~~a~p~d~~~~ae------l~~~vf-v~vpd~ 78 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRA-DHVVVACSAISSRSR--DRAQNLAETYVAPPLDVAKSAE------LLLLVF-VDVPDA 78 (289)
T ss_pred CEEEEEEEECCHHHHHHHHHH-HHHHEEEHHHHHCCH--HHHHHHHHHCCCCCCCHHHCHH------HHCEEE-ECCCHH
T ss_conf 015888760442789999874-003212113432178--9986204421799510120734------515478-626088
Q ss_pred H-HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHH
Q ss_conf 4-78887643237215765022231358999874035--552100001156
Q gi|254780279|r 84 T-LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN--APIVKSSNMSLG 131 (280)
Q Consensus 84 ~-~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiG 131 (280)
. ......-+..+-.+|+-|+|++.. ..++.+.+. +|.-+-||||..
T Consensus 79 ~~~~vaa~~~~rpg~iv~HcSga~~~--~il~~~gr~g~~~asiHP~f~Fs 127 (289)
T COG5495 79 LYSGVAATSLNRPGTIVAHCSGANGS--GILAPLGRQGCIPASIHPAFSFS 127 (289)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCH--HHHHHHHHCCCCCCEECCCHHCC
T ss_conf 88888876046898389974688740--45425421587530005211036
No 187
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.48 E-value=0.11 Score=31.77 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=57.4
Q ss_pred CCC-CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 998-8737999899877999999998389978999996489802045536660875467545568578521355047631
Q gi|254780279|r 1 MHQ-SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 1 M~~-~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT 79 (280)
|+. +.=||+|+|.|+-|+++++.+.+. ..++..-|.+..+ +..+..... ..+...++ ..+.++|+|| .
T Consensus 1 ~~~~~~K~v~V~GlG~sG~a~~~~L~~~--~~~~~~dd~~~~~----~~~~~~~~~-~~~~~~~~--~~~~~~d~iV--~ 69 (450)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQNK--YDLIVYDDLKANR----DIFEELFSK-NAIIALSD--SRWQNLDKIV--L 69 (450)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCCH----HHHHHHHCC-CCEECCCC--CCHHCCCEEE--E
T ss_conf 9766899089995878799999999719--9989998996564----789975214-83602571--1152199999--8
Q ss_pred CCCHH--HHHHHHHHHCCCEE---------------EEEECCCCHH--HHHHHHHHHCC--CCCEECCCHHHHHHHHH
Q ss_conf 01024--78887643237215---------------7650222313--58999874035--55210000115689999
Q gi|254780279|r 80 SPALT--LQSLNISAQHNIVH---------------IIGTTGFSVK--ENEVISSFARN--APIVKSSNMSLGINFLG 136 (280)
Q Consensus 80 ~P~~~--~~~~~~a~~~g~~v---------------ViGTTG~~~e--~~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280)
+|..- .+.++.|.+.|+|+ +||.||=+-+ .-..+..+-+. .....+.| ||..++.
T Consensus 70 SPGI~~~~p~~~~a~~~~i~i~~eiel~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GN--IG~p~l~ 145 (450)
T PRK01368 70 SPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGN--IGVPALQ 145 (450)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC--CCHHHHH
T ss_conf 996199899999999879958769999997667997799968999748999999999975996289625--5636652
No 188
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.46 E-value=0.13 Score=31.10 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=51.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC-H
Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521355047631010-2
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA-L 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~-~ 83 (280)
+|+++|.|+|+||..+.....+ .+.|++-+-.|.+..... .....+ +. ..-...+++.+.+|||+ ++.|- +
T Consensus 1 m~~~~i~GtGniG~alA~~~a~-ag~eV~igs~r~~~~~~a--~a~~l~--~~--i~~~~~~dA~~~aDVVv-LAVP~~a 72 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK-AGHEVIIGSSRGPKALAA--AAAALG--PL--ITGGSNEDAAALADVVV-LAVPFEA 72 (211)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCCHHHHHH--HHHHHC--CC--CCCCCHHHHHHCCCEEE-EECCHHH
T ss_conf 9179996257187899999996-797399964788067889--998645--65--33477688884399899-9545787
Q ss_pred HHHHHHHHHH-C-CCEEEEEECC
Q ss_conf 4788876432-3-7215765022
Q gi|254780279|r 84 TLQSLNISAQ-H-NIVHIIGTTG 104 (280)
Q Consensus 84 ~~~~~~~a~~-~-g~~vViGTTG 104 (280)
....++.... . +|-+|-.|-.
T Consensus 73 ~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 73 IPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred HHHHHHHHHHHHCCEEEEECCCC
T ss_conf 77699999987099099966887
No 189
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=95.45 E-value=0.063 Score=33.34 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=52.5
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEE----
Q ss_conf 37999899-877999999998389978999996489802045536660875467545568578521--35504763----
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDF---- 78 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDF---- 78 (280)
|||.|.|+ |.+|+++.+.+. +++++++.- +.+ .++.-.+.+.+++. ++|+||-.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~-~~~----------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt 61 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATD-RAE----------------LDITDPDAVLEVIRETRPDVVINAAAYT 61 (281)
T ss_pred CCEEEECCCCHHHHHHHHHHC--CCCEEEECC-CCC----------------CCCCCHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 958997698767999999717--784399515-765----------------5556858999999861999899873203
Q ss_pred ------ECCC--------HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf ------1010--------24788876432372157650222
Q gi|254780279|r 79 ------SSPA--------LTLQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 79 ------T~P~--------~~~~~~~~a~~~g~~vViGTTG~ 105 (280)
+.|+ +....++.|.+.|.++|-=+|.+
T Consensus 62 ~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDy 102 (281)
T COG1091 62 AVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDY 102 (281)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCE
T ss_conf 65413389899777677999999999997197699963445
No 190
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.45 E-value=0.037 Score=34.91 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=63.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCC-CCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 3799989987799999999838997899999648980204553666087-546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGI-SPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~-~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
-.++|+|+|..++..+..+..-..++-+-+++|...... ...+.... ....+...++.+++..++|||+-.|. +..
T Consensus 119 ~~l~iiG~G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~--~f~~~~~~~~~~~v~~~~~~e~av~~aDiI~taT~-s~~ 195 (302)
T PRK06407 119 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHAR--AFAERFSKEFGVDIRPVDNAEAALRDADTITSITN-SDT 195 (302)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH--HHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEECC-CCC
T ss_conf 789999665999999999997407738999808889999--99999864409957994899999834999999418-988
Q ss_pred HHHHHHHHHCCCEEEE-EEC
Q ss_conf 7888764323721576-502
Q gi|254780279|r 85 LQSLNISAQHNIVHII-GTT 103 (280)
Q Consensus 85 ~~~~~~a~~~g~~vVi-GTT 103 (280)
.-.-...++.|.++.. |+.
T Consensus 196 Pv~~~~~l~~g~hi~aiGa~ 215 (302)
T PRK06407 196 PIFNRKYLGDEYHVNLAGSN 215 (302)
T ss_pred CCCCHHHCCCCCEEEEECCC
T ss_conf 67158887999489963799
No 191
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.39 E-value=0.097 Score=32.06 Aligned_cols=118 Identities=16% Similarity=0.294 Sum_probs=58.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCCCCEEEEEECCCH
Q ss_conf 7999899877999999998389-978999996489802045536660875467545--5685785213550476310102
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~~DViIDFT~P~~ 83 (280)
||.|+|.|+-|+++++.+.+.. ++.+ .+.|.+..+.....+. .++.+ ...-.+.+.++|+|| .+|..
T Consensus 9 kvlV~GlG~sG~s~a~~L~~~~~~~~v-~~~D~~~~~~~~~~l~-------~~~~~~~g~~~~~~l~~~d~vV--~SPGI 78 (438)
T PRK04663 9 NVVVVGLGITGLSVVKHLRKTQPQLTV-KVIDTRETPPGQEQLP-------EDVELHSGGWNQDWLAEADLVV--TNPGI 78 (438)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCCEE-EEECCCCCHHHHHHHH-------CCCEEEECCCCHHHHCCCCEEE--ECCCC
T ss_conf 499990678589999999966998469-9963988936887620-------6976972788967836899999--89976
Q ss_pred H--HHHHHHHHHCCCEE--------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHHHHHHHH
Q ss_conf 4--78887643237215--------------76502223135--8999874035--55210000115689999
Q gi|254780279|r 84 T--LQSLNISAQHNIVH--------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSLGINFLG 136 (280)
Q Consensus 84 ~--~~~~~~a~~~g~~v--------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280)
- .+.+..+.+.|+|+ |||.||=+-+. -..+..+.+. ..+..+.|+ |..++.
T Consensus 79 ~~~~p~~~~a~~~~i~i~~eiel~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGNi--G~p~~~ 149 (438)
T PRK04663 79 ALATPEIQPVLAKGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPALD 149 (438)
T ss_pred CCCCHHHHHHHHCCCCEECHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEC--CCHHHH
T ss_conf 99898999999869937038899976458978999489982899999999998289970687215--716887
No 192
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.37 E-value=0.032 Score=35.33 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=62.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
=.++|+|+|..++..++.+..-..++-+.+++|....... .-+........+.+.++.++++..+|||+-.| |+...
T Consensus 129 ~~l~iiGtG~QA~~~l~a~~~v~~i~~v~v~~r~~~~~~~--f~~~~~~~~~~v~~~~~~~eav~~ADIIvtaT-~s~~P 205 (315)
T PRK06823 129 KAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEE--YRQYAQALGFAVNTTLDAAEVAHAANLIVTTT-PSREP 205 (315)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH--HHHHHHHCCCCEEEECCHHHHHHHCCEEEEEE-CCCCC
T ss_conf 5699977189999999999871871099994699799999--99999861990799489999974277479887-89996
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 88876432372157
Q gi|254780279|r 86 QSLNISAQHNIVHI 99 (280)
Q Consensus 86 ~~~~~a~~~g~~vV 99 (280)
-.-...++.|.++.
T Consensus 206 v~~~~~lkpG~hi~ 219 (315)
T PRK06823 206 LLQAEDIQPGTHIT 219 (315)
T ss_pred CCCCCCCCCCCEEE
T ss_conf 41655578996798
No 193
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=95.36 E-value=0.077 Score=32.74 Aligned_cols=98 Identities=13% Similarity=0.209 Sum_probs=59.4
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH-HH
Q ss_conf 99899877999999998389978999996489802045536660875467545568578521355047631010247-88
Q gi|254780279|r 9 SVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL-QS 87 (280)
Q Consensus 9 ~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~-~~ 87 (280)
+|+|+||+|..+...+. ..++.++++..|+.... +-..... +.++. +..++.+.+|+|+ .|.|+... +.
T Consensus 1 GiIGaGrvG~~L~~al~-~aGh~v~gv~srs~~s~--~~a~~~~-----~~~~~-~~~ev~~~adlv~-itvPDd~I~~v 70 (111)
T pfam10727 1 GIISAGRVGVALGEALE-RAGHVVHAISAISDASR--ERAERRL-----DSPVL-PIPDVIRRAELVV-LAVPDAELPGL 70 (111)
T ss_pred CCCCCCHHHHHHHHHHH-HCCCEEEEEEECCHHHH--HHHHHHC-----CCCCC-CHHHHHHHCCEEE-EECCHHHHHHH
T ss_conf 94376577999999999-78982899983898899--9999866-----99767-9589897679999-98978889999
Q ss_pred HHHH---HHCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 8764---3237215765022231358999874035
Q gi|254780279|r 88 LNIS---AQHNIVHIIGTTGFSVKENEVISSFARN 119 (280)
Q Consensus 88 ~~~a---~~~g~~vViGTTG~~~e~~~~l~~~s~~ 119 (280)
.+.. ...|+ +|+=|+|=.. .+.|+.+.+.
T Consensus 71 v~~la~~~~~Gq-iV~HtSGa~g--~~vL~pa~~~ 102 (111)
T pfam10727 71 VEGLAATVRRGQ-IVAHTSGAHG--IGILAPLETS 102 (111)
T ss_pred HHHHHHHCCCCC-EEEECCCCCH--HHHHCHHHHC
T ss_conf 999983267997-9998668750--7761449878
No 194
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.36 E-value=0.22 Score=29.64 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=55.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--H---CCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 37999899877999999998389978999996489802--0---455366608754675455685785213550476310
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--I---GQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS 80 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~---g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~ 80 (280)
|||+|+|+|-||..+...+.+ .+.+++ .++|.+... + |..+....+.....+...+++++ ..++|+||-++-
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~-ag~~V~-li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vK 77 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQ-AGHDVT-LVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAE-LGPQDLVILAVK 77 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHH-CCCCCEEEEECC
T ss_conf 989999914999999999984-899889-99788889999996893995289769805503488667-489888999806
Q ss_pred CCHHHHH---HHHHHHCCCEEEEEECCCCHH
Q ss_conf 1024788---876432372157650222313
Q gi|254780279|r 81 PALTLQS---LNISAQHNIVHIIGTTGFSVK 108 (280)
Q Consensus 81 P~~~~~~---~~~a~~~g~~vViGTTG~~~e 108 (280)
...+.+. ++-.+..+.++|.---|+..+
T Consensus 78 s~~~~~a~~~l~~~l~~~t~iv~lqNG~g~~ 108 (307)
T PRK06522 78 AYQLPAALPDLAPLLGPETVVLFLQNGVGHE 108 (307)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCHH
T ss_conf 6689999999986459994899961686779
No 195
>PRK08291 ornithine cyclodeaminase; Validated
Probab=95.35 E-value=0.036 Score=35.01 Aligned_cols=90 Identities=9% Similarity=0.114 Sum_probs=61.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH--CCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 379998998779999999983899789999964898020--455366608754675455685785213550476310102
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI--GQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~--g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
=+++|+|+|..++..++.+..-..++=+.+++|+..+.. ..++.... ...+.+.++.++++..+|||+-.|+ +.
T Consensus 133 ~~l~iiG~G~QA~~~l~Al~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~---g~~v~~~~~~~~av~~aDIIvtaT~-s~ 208 (330)
T PRK08291 133 SRVAVFGAGEQARLQLEALTLVRDIREVRVWARDAAKAEAFAAELRAAL---GIPVTVARDVHAALAGADIVVTTTP-SE 208 (330)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH---CCCEEEECCHHHHHHCCCEEEEEEC-CC
T ss_conf 5699987648899999999973897689998389899999999998976---9966992999999722888999768-99
Q ss_pred HHHHHHHHHHCCCEEE
Q ss_conf 4788876432372157
Q gi|254780279|r 84 TLQSLNISAQHNIVHI 99 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vV 99 (280)
..-.-...++-|.++.
T Consensus 209 ~Pv~~~~~lkpG~hI~ 224 (330)
T PRK08291 209 EPILKAEWLHPGLHVT 224 (330)
T ss_pred CCCCCHHHCCCCCEEE
T ss_conf 9501510069982899
No 196
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.34 E-value=0.12 Score=31.32 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=53.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHH----CCCCCCCCCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 3799989987799999999838997899999648980204553666----087546754556857852135504763101
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNF----VGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~----~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280)
|||+|+|+|-||..+...+.+ .+.+++.+ .|.++...-+.-|.. .+......+...+.++...++|+||-++-.
T Consensus 1 MkI~I~GaGAiG~~~a~~L~~-~g~~V~lv-~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~viva~Ks 78 (306)
T PRK12921 1 MKIAVVGAGAVGGTFGARLLE-AGRDVTFL-GRSARAEALREKGLVIRSDHGDVTVPGPVITDPEEITGPFDLVILAVKA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCCEEEE-EECCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHCCCCCEEEEEECC
T ss_conf 989999924999999999983-69988999-7000999999789699977976998061050805656897689997045
Q ss_pred CHHHHH---HHHHHHCCCEEEEEECCCCHH
Q ss_conf 024788---876432372157650222313
Q gi|254780279|r 82 ALTLQS---LNISAQHNIVHIIGTTGFSVK 108 (280)
Q Consensus 82 ~~~~~~---~~~a~~~g~~vViGTTG~~~e 108 (280)
..+.+. ++-++..+.++|+---|+..+
T Consensus 79 ~~~~~a~~~l~~~~~~~t~il~lQNG~g~~ 108 (306)
T PRK12921 79 YQLDAAIPDLKPLVGEDTVIIPLQNGIGHL 108 (306)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 677999999986339994899934877538
No 197
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.33 E-value=0.17 Score=30.44 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=24.9
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 37999899-8779999999983899789999964
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVR 38 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~ 38 (280)
|||.|.|+ |-.|+.+++.+.+. +.++++ +|+
T Consensus 1 MkvLVTGg~GFIGs~l~~~Ll~~-g~~V~~-~d~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVI-LDN 32 (338)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEE-EEC
T ss_conf 91999898767999999999978-498999-988
No 198
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.11 Score=31.61 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=62.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCCCCEEEEEECCC
Q ss_conf 737999899877999999998389978999996489802045536660875467545--568578521355047631010
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~~DViIDFT~P~ 82 (280)
-.||+|+|.|+-|.++++.+.+ .+..+...-+++... .. + ........++.+ ..+....+..+|+|| -+|.
T Consensus 14 gk~v~V~GlG~sG~s~a~~L~~-~G~~v~~~D~~~~~~-~~-~--~~~~l~~~g~~~~~g~~~~~~~~~~d~vV--~SPG 86 (481)
T PRK01438 14 GLRVVVAGLGVSGFPAADALHE-LGASVTVVADGDDDR-SR-E--RAALLEVLGATVRLGDGETTLPEGTELVV--TSPG 86 (481)
T ss_pred CCEEEEEEECHHHHHHHHHHHH-CCCEEEEEECCCCCC-CH-H--HHHHHHHCCCEEEECCCHHHHHCCCCEEE--ECCC
T ss_conf 9989999575889999999996-799899997998744-86-8--99988854988996887566624899999--8997
Q ss_pred HH--HHHHHHHHHCCCEE----------------------EEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHH
Q ss_conf 24--78887643237215----------------------765022231358999874035--55210000115689999
Q gi|254780279|r 83 LT--LQSLNISAQHNIVH----------------------IIGTTGFSVKENEVISSFARN--APIVKSSNMSLGINFLG 136 (280)
Q Consensus 83 ~~--~~~~~~a~~~g~~v----------------------ViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280)
.- .+.+..|.++|+|+ |.||-|=|.- -..+..+-+. .....+.| ||..++.
T Consensus 87 I~~~~p~~~~a~~~gi~i~~eiel~~~~~~~~~~~~~~IaVTGTnGKTTT-tsli~~iL~~~g~~~~~~GN--IG~p~l~ 163 (481)
T PRK01438 87 WRPTHPLLAAAAEAGIPVWGDVELAWRLRDPDGTPAPWLAVTGTNGKTTT-VQMLASILRAAGLRAAAVGN--IGVPVLD 163 (481)
T ss_pred CCCCCHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HHHHHHHHHHCCCCEEEEEE--CCHHHHH
T ss_conf 89989999999986993861899999875213688878999389974609-99999999966997079962--5677776
No 199
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=95.30 E-value=0.03 Score=35.58 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=52.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC------CCCEEEEEE-
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521------355047631-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ------SVDGIIDFS- 79 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~------~~DViIDFT- 79 (280)
+|.|.|+|-+|...++.. +.-+..-+.++++.+.+. +.....|....--.-.+++.+.+. .+|++||++
T Consensus 166 ~VlV~GaG~vGl~~~~~a-k~~Ga~~Vi~~d~~~~kl---~~a~~lGa~~~i~~~~~~~~~~~~~~t~~~G~Dvvid~~G 241 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVA-KHVGARHVVITDVNEYRL---ELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred EEEEECCCCCCHHHHHHH-HHCCCEEEEEEECCHHHH---HHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 699989975432999999-984992899994899999---9898649949996885068999999748999769998789
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 0102478887643237215765022
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTG 104 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG 104 (280)
.|+.....++.+...|+-+++|..+
T Consensus 242 ~~~~~~~~~~~l~~gG~vv~~G~~~ 266 (341)
T PRK05396 242 APSAFRQMLDAMNHGGRIAMLGIPP 266 (341)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8999999999863598999995579
No 200
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.29 E-value=0.11 Score=31.74 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=48.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEE---E
Q ss_conf 37999899-877999999998389978999996489802045536660875467545568578521--35504763---1
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDF---S 79 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDF---T 79 (280)
|||.|.|+ |.+|+++.+.+....++... +....... .| +.-.+.+.+.+. .+|+||.+ |
T Consensus 1 MkILvtGa~GqLG~~l~~~l~~~~~~~~~---~~~~~~~~-~D-----------it~~~~v~~~~~~~~Pd~IIN~aA~T 65 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGNLIAL---DVHSTDYC-GD-----------FSNPEGVAETVRKIRPDVIVNAAAHT 65 (299)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEE---ECCCCCCC-CC-----------CCCHHHHHHHHHHCCCCEEEECHHHC
T ss_conf 97999899997899999986650988998---52630013-67-----------89999999999965999999883101
Q ss_pred CCC---------------HHHHHHHHHHHCCCEEEEEEC
Q ss_conf 010---------------247888764323721576502
Q gi|254780279|r 80 SPA---------------LTLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 80 ~P~---------------~~~~~~~~a~~~g~~vViGTT 103 (280)
..+ ++...++.|.+.+.++|-=+|
T Consensus 66 ~VD~~E~~~~~a~~vN~~~~~~La~~~~~~~~~lIhiST 104 (299)
T PRK09987 66 AVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST 104 (299)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 636652489999998889999999999973985999632
No 201
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.28 E-value=0.085 Score=32.44 Aligned_cols=163 Identities=19% Similarity=0.228 Sum_probs=81.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-HHC-----CCHHHHCCC---C-------CCCCCCCCCHHHH
Q ss_conf 73799989987799999999838997899999648980-204-----553666087---5-------4675455685785
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-LIG-----QDVGNFVGI---S-------PMGIKFSDNLAMA 68 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-~~g-----~d~~~~~~~---~-------~~~v~i~~dl~~~ 68 (280)
..||+|+|+|.||+.|+...+. .++.++- +|.+... ..+ +.+...... . -..+..+.++. .
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l-~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVL-KDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-CCCCEEE-EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHH-H
T ss_conf 4079997246020999999973-4995699-95898999999999999999888627877455999975152557665-6
Q ss_pred HCCCCEEEEEEC-------------------------CCHHHHHHHHHHHCCCE-EEEEEC---------------C-CC
Q ss_conf 213550476310-------------------------10247888764323721-576502---------------2-23
Q gi|254780279|r 69 IQSVDGIIDFSS-------------------------PALTLQSLNISAQHNIV-HIIGTT---------------G-FS 106 (280)
Q Consensus 69 ~~~~DViIDFT~-------------------------P~~~~~~~~~a~~~g~~-vViGTT---------------G-~~ 106 (280)
+..||.||+.-. -.+++...+.+...+.| -++|.- | .|
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T 159 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKT 159 (307)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCHHEEEEECCCCCCCCEEEEEECCCCC
T ss_conf 63088788853015999999999988655988578622677878999987379323798752698771105888168878
Q ss_pred -HHHHHHHHHHHCC---CCCEE--CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf -1358999874035---55210--000115689999999999986115666008999986416789986789
Q gi|254780279|r 107 -VKENEVISSFARN---APIVK--SSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTA 172 (280)
Q Consensus 107 -~e~~~~l~~~s~~---~~il~--apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGTA 172 (280)
++..+.+.+++++ .|++. .|+|=.- -++..+...+...+.. ...+++-++.--+...--|.|+-
T Consensus 160 ~~e~~~~~~~~~~~igK~~vv~~D~pGFi~N-Ril~~~~~eA~~l~~e-Gva~~e~ID~~~~~~~G~pmGpf 229 (307)
T COG1250 160 SDETVERVVEFAKKIGKTPVVVKDVPGFIVN-RLLAALLNEAIRLLEE-GVATPEEIDAAMRQGLGLPMGPF 229 (307)
T ss_pred CHHHHHHHHHHHHHCCCCCEEECCCCCEEHH-HHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCHH
T ss_conf 9999999999999859988742678861257-7789999999999980-89999999999986369976588
No 202
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.23 E-value=0.077 Score=32.74 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=78.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEEEE-C--
Q ss_conf 799989987799999999838997899999648980204--5536660875-467545568578521355047631-0--
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIIDFS-S-- 80 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViIDFT-~-- 80 (280)
||+|+|+|+.|..++-.+....-..=...+|..+....| .|+....... .....+....-+.+.++||||=-. .
T Consensus 1 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~~~aDiVVitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCCCCC
T ss_conf 98999969899999999985699887999928898237999987612035899865866799899469999998677765
Q ss_pred -CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -1024788876432372157650222313589998740355521000011568999999999998611566600899998
Q gi|254780279|r 81 -PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM 159 (280)
Q Consensus 81 -P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~ 159 (280)
|..+..-... ++.+..++ .+-.+.|.+.+-+.-++...|- +.+|..++.+.+.+ ++. .++
T Consensus 81 kpg~t~~R~dL-~~~N~~I~-------~~i~~~i~~~~p~~i~ivvsNP---vDvmt~~~~k~sg~-p~~-----rVi-- 141 (307)
T cd05290 81 DPGNTDDRLDL-AQTNAKII-------REIMGNITKVTKEAVIILITNP---LDIAVYIAATEFDY-PAN-----KVI-- 141 (307)
T ss_pred CCCCCCCHHHH-HHHHHHHH-------HHHHHHHHHCCCCEEEEECCCC---HHHHHHHHHHHHCC-CCC-----CEE--
T ss_conf 89998358888-88578999-------9999998613997499984793---88999999998489-935-----787--
Q ss_pred HHHCCCCCCCHHHHHH---HHHHHHHCCCC
Q ss_conf 6416789986789999---99998532887
Q gi|254780279|r 160 HHRRKLDSPSGTALLL---GEAIANGRKVN 186 (280)
Q Consensus 160 HH~~K~DaPSGTA~~l---a~~i~~~~~~~ 186 (280)
=+||.+.. ...+++..+.+
T Consensus 142 --------G~Gt~LDsaR~r~~la~~l~v~ 163 (307)
T cd05290 142 --------GTGTMLDTARLRRIVADKYGVD 163 (307)
T ss_pred --------ECCCHHHHHHHHHHHHHHHCCC
T ss_conf --------2022177899999999984999
No 203
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.21 E-value=0.13 Score=31.28 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=24.2
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 737999899-877999999998389978999996489
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSG 40 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~ 40 (280)
+=||.|+|. |+||+-..+... ..++++ .++++++
T Consensus 98 ~~~i~IIGG~G~mG~~F~~~f~-~sGy~V-~ild~~d 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLT-LSGYQV-RILEKDD 132 (374)
T ss_pred CCEEEEEECCCCHHHHHHHHHH-HCCCEE-EEECCCC
T ss_conf 8717998079827799999999-679879-9616444
No 204
>PRK07574 formate dehydrogenase; Provisional
Probab=95.08 E-value=0.072 Score=32.94 Aligned_cols=26 Identities=31% Similarity=0.717 Sum_probs=12.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 799989987799999999838997899
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLH 33 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv 33 (280)
.|||+|+||.|+.+++.+.. =++++.
T Consensus 194 TlGIVG~GrIG~~VArra~a-Fgm~Vl 219 (385)
T PRK07574 194 TVGTVGAGRIGLAVLRRLKP-FDVTLH 219 (385)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEE
T ss_conf 89998978899999999997-799899
No 205
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.08 E-value=0.047 Score=34.24 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=61.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCC-CCCCCCCCCCHHHHHCCCCEEEEEEC-CCHH
Q ss_conf 799989987799999999838997899999648980204553666087-54675455685785213550476310-1024
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGI-SPMGIKFSDNLAMAIQSVDGIIDFSS-PALT 84 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~-~~~~v~i~~dl~~~~~~~DViIDFT~-P~~~ 84 (280)
.++|+|+|..++..++.+..-.+++=+.+++|..... ..+.+.... -...+.+.+++++++..+|||+-.|+ .+.+
T Consensus 129 ~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~~--~~f~~~~~~~~g~~v~~~~~~~~av~~aDiV~taT~s~~Pv 206 (325)
T PRK08618 129 TLCLIGTGGQAKGQLEAVLAVRDIEKVRVYSRTFEKA--YAFAQEIQSKFNTEIYVVESADEAIEEADIIVTVTNAKTPV 206 (325)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHH--HHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEECCCCCCC
T ss_conf 6999756079999999998608966899994799999--99999998750996699589999984398899925999864
Q ss_pred HHHHHHHHHCCCEEE-EEE
Q ss_conf 788876432372157-650
Q gi|254780279|r 85 LQSLNISAQHNIVHI-IGT 102 (280)
Q Consensus 85 ~~~~~~a~~~g~~vV-iGT 102 (280)
+...++-|.++. +|+
T Consensus 207 ---~~~~l~~g~hi~aiGs 222 (325)
T PRK08618 207 ---FSEKLKKGVHINAVGS 222 (325)
T ss_pred ---CCCCCCCCEEECCCCC
T ss_conf ---4543588717513246
No 206
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.03 E-value=0.33 Score=28.37 Aligned_cols=161 Identities=16% Similarity=0.249 Sum_probs=88.2
Q ss_pred EEEEEECCCH--HHHHHHHHHHHCCCCEE--EEEEECCCCHH-----HCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 3799989987--79999999983899789--99996489802-----045536660875467545568578521355047
Q gi|254780279|r 6 MRISVLGGGR--MGQALIKEIHNNPSITL--HSIIVRSGSPL-----IGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~GaGk--MG~~ii~~i~~~~~~eL--v~~i~~~~~~~-----~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
|||+++|+|= -...+++.+.+.+++.. +...|-+..+. +.+.+.+..+ .+..+..+.|.+++++.+|-|+
T Consensus 1 ~KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~~~~~~~~-~~~~v~~Ttd~~eAl~gADfV~ 79 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELG-APLKIEATTDRREALDGADFVI 79 (423)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHCCCCEEE
T ss_conf 979999986487599999999608457899899988999999999999999998519-9818999689999846899999
Q ss_pred EEECCCH---HHHHHHHHHHCCCEEEEE-ECC---CCHH--HHHHHHHHH----CCCCCEECCCHHHHHHHHHHHHHHHH
Q ss_conf 6310102---478887643237215765-022---2313--589998740----35552100001156899999999999
Q gi|254780279|r 77 DFSSPAL---TLQSLNISAQHNIVHIIG-TTG---FSVK--ENEVISSFA----RNAPIVKSSNMSLGINFLGFLVETAA 143 (280)
Q Consensus 77 DFT~P~~---~~~~~~~a~~~g~~vViG-TTG---~~~e--~~~~l~~~s----~~~~il~apN~SiGv~ll~~l~~~~a 143 (280)
---.+.. ...--+..+++|+---+| ||| |... .+..+-+++ +..|=-|-=|||==+.+...++....
T Consensus 80 ~~irvGg~~~r~~De~Iplk~Gv~~~vGET~G~GG~~~alRtIPv~leia~~i~e~~P~AwiiNytNP~~ivteal~r~~ 159 (423)
T cd05297 80 NTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYT 159 (423)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHC
T ss_conf 98774682488988848988396604456547758999862289999999999987998389976788899999999738
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 86115666008999986416789986789999999985
Q gi|254780279|r 144 EYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIAN 181 (280)
Q Consensus 144 ~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~ 181 (280)
+ . .++=. =|.|.||...+|+.+..
T Consensus 160 ~----~-----k~iGl-----C~~p~~~~~~la~~l~~ 183 (423)
T cd05297 160 P----I-----KTVGL-----CHGVQGTAEQLAKLLGE 183 (423)
T ss_pred C----C-----CEEEE-----CCCHHHHHHHHHHHHCC
T ss_conf 9----9-----78987-----97769999999998299
No 207
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=95.02 E-value=0.19 Score=30.10 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=57.3
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH---HCCCCEEEEEECC
Q ss_conf 37999899-8779999999983899789999964898020455366608754675455685785---2135504763101
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA---IQSVDGIIDFSSP 81 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~---~~~~DViIDFT~P 81 (280)
-+|.|.|+ |-+|...++.. +.-+.++++... ++.+. +.-...+. .+....+..+. +..+|+++|++-.
T Consensus 164 ~~VlI~Ga~G~vG~~aiqla-k~~Ga~vi~v~~-~~~k~---~~~~~~~~---~~i~~~~~~~~~~~~~g~Dvvid~~G~ 235 (332)
T PRK13771 164 ETVLVTGAGGGVGIHAVQVA-KAYGAKVIAVTT-SESKA---KAVGKYAD---YVIVGSKFSEEVKKLGGADIVIETVGG 235 (332)
T ss_pred CEEEEECCCCHHHHHHHHHH-HHCCCEEEEEEC-CHHHH---HHHHHCCC---EEEECCCHHHHHHHCCCCCEEEECCCH
T ss_conf 99999778775899999999-986998999949-99999---99985699---898363057888734686389845766
Q ss_pred CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 0247888764323721576502223135899987403555210
Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVK 124 (280)
Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~ 124 (280)
......++.+...|.-+++|...-....+..-.-..+.+.+.-
T Consensus 236 ~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~k~~~i~g 278 (332)
T PRK13771 236 PTLEESLRSLNWGGKIVLIGNVDPSPASLRLGLLILKDIEILG 278 (332)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEEE
T ss_conf 8899888862589699999345787576458999866878999
No 208
>KOG1198 consensus
Probab=94.95 E-value=0.13 Score=31.08 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=55.2
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHHHC-----CCCEEEE
Q ss_conf 737999899-8779999999983899789999964898020455366608754675455-68578521-----3550476
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMAIQ-----SVDGIID 77 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~~~-----~~DViID 77 (280)
..+|.|.|+ |-.|+..++...... +..+.+++++++...-+.++. ... +.+. .+..+.++ .+|+|+|
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGA----d~v-vdy~~~~~~e~~kk~~~~~~DvVlD 231 (347)
T KOG1198 158 GKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGA----DEV-VDYKDENVVELIKKYTGKGVDVVLD 231 (347)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHCCC----CCC-CCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 9869999387489999999998749-747999815541689997299----651-2488577999987622788509998
Q ss_pred EECCCHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 310102478887643237215765022
Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIVHIIGTTG 104 (280)
Q Consensus 78 FT~P~~~~~~~~~a~~~g~~vViGTTG 104 (280)
|-...............+...++++.|
T Consensus 232 ~vg~~~~~~~~~~l~~~g~~~~i~~~~ 258 (347)
T KOG1198 232 CVGGSTLTKSLSCLLKGGGGAYIGLVG 258 (347)
T ss_pred CCCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 888973243234332378726999437
No 209
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=94.95 E-value=0.057 Score=33.65 Aligned_cols=86 Identities=22% Similarity=0.323 Sum_probs=49.0
Q ss_pred CCCCCE---EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 998873---79998998779999999983899789999964898020455366608754675455685785213550476
Q gi|254780279|r 1 MHQSPM---RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIID 77 (280)
Q Consensus 1 M~~~~I---kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViID 77 (280)
|++-+| ||.|+|.||.|+++++....---- |.+..|+. +|+.......-.+++ ...+++.+.++|+||-
T Consensus 145 ~td~TIHgS~v~VlGfGRtG~tiAr~f~aLGA~--V~V~AR~~-----~dlARI~E~g~~P~~-~~~L~~~v~e~DIviN 216 (288)
T TIGR02853 145 HTDFTIHGSNVMVLGFGRTGMTIARTFSALGAR--VSVGARSS-----ADLARITEMGLEPVP-LNKLEEKVAEIDIVIN 216 (288)
T ss_pred CCCCCEECCEEEEECCCCHHHHHHHHHHHCCCE--EEEECCCH-----HHHHHHHHHCCCCCC-HHHHHHHHCCCCEEEE
T ss_conf 489625013457884470568999999726980--57531783-----678999996068827-1678876500024770
Q ss_pred EECCCHHH--HHHHHHHHCC
Q ss_conf 31010247--8887643237
Q gi|254780279|r 78 FSSPALTL--QSLNISAQHN 95 (280)
Q Consensus 78 FT~P~~~~--~~~~~a~~~g 95 (280)
|.|.-+. +.+..+-++-
T Consensus 217 -TiPaLvlt~~~l~~lp~~A 235 (288)
T TIGR02853 217 -TIPALVLTKDVLSKLPKHA 235 (288)
T ss_pred -CCCCCCCCHHHHHHCCCCC
T ss_conf -6763003658995268584
No 210
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.94 E-value=0.069 Score=33.05 Aligned_cols=98 Identities=16% Similarity=0.330 Sum_probs=62.3
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCC-----CCCCCCC-HHHHHCCCCEEEE
Q ss_conf 737999899-87799999999838997899999648980204553666087546-----7545568-5785213550476
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPM-----GIKFSDN-LAMAIQSVDGIID 77 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~-----~v~i~~d-l~~~~~~~DViID 77 (280)
.-||.|.|. |-.|..+.+.+.++.++++.|. |-.++. +..+.+.+.. ++.+..+ ++.-+++||||+-
T Consensus 315 ~~~vlilgvngfig~hl~~~~l~~~~~~v~g~-d~~~~~-----i~~~~~~p~~~f~~gdi~~~~~wie~~ikkcdvvlp 388 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGL-DIGSDA-----ISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLP 388 (660)
T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCEEEEEE-ECCCCH-----HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEE
T ss_conf 22799983441367899999850388589988-657534-----557534995488815614668999988754576732
Q ss_pred E---------E-CCC--------HHHHHHHHHHHCCCEEEEEEC----CCCHH
Q ss_conf 3---------1-010--------247888764323721576502----22313
Q gi|254780279|r 78 F---------S-SPA--------LTLQSLNISAQHNIVHIIGTT----GFSVK 108 (280)
Q Consensus 78 F---------T-~P~--------~~~~~~~~a~~~g~~vViGTT----G~~~e 108 (280)
. + +|- .-+.++++|.+++|.+|.-+| |..++
T Consensus 389 lvaiatp~~y~~~pl~vfeldfe~nl~ivr~c~ky~kriifpstsevygm~~d 441 (660)
T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYRKRIIFPSTSEVYGMCTD 441 (660)
T ss_pred EHHHCCHHHHHCCCCEEEEECHHHCCHHHHHHHHHCCEEEECCHHHHCCCCCC
T ss_conf 05534747763486047873267552899999974877896560551014788
No 211
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.89 E-value=0.36 Score=28.12 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=62.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-CCCH--HHHH-----CCCC-EEEE
Q ss_conf 7999899877999999998389978999996489802045536660875467545-5685--7852-----1355-0476
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-SDNL--AMAI-----QSVD-GIID 77 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~~dl--~~~~-----~~~D-ViID 77 (280)
.|.|+|+||+||.+.+.+.+ .+...+ ++|.++... ......|.++ +.|. .+.+ +++. +++-
T Consensus 419 hvii~G~Gr~G~~va~~L~~-~~~~~v-vid~d~~~v--------~~~~~~g~~v~~GDa~~~~~L~~agi~~A~~vvit 488 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLA-SGIPLV-VIETSRTRV--------DELRERGIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEE-EEECCHHHH--------HHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEE
T ss_conf 98998988669999999998-799889-998989999--------99996899799978998899985791324999998
Q ss_pred EECCCHHHHHHHHHHHCCC--EEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 3101024788876432372--15765022231358999874035552100001156
Q gi|254780279|r 78 FSSPALTLQSLNISAQHNI--VHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 78 FT~P~~~~~~~~~a~~~g~--~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280)
+..|......++.+.+.+- +++ ....++++.++|+++. +..++.|.+-.|
T Consensus 489 ~~d~~~~~~iv~~~r~~~p~~~Ii--aRa~~~~~~~~L~~aG--A~~VV~~~~e~a 540 (558)
T PRK10669 489 IPNGYEAGEIVASAREKNPDIEII--ARAHYDDEVAYITERG--ANQVVMGEREIA 540 (558)
T ss_pred ECCHHHHHHHHHHHHHHCCCCEEE--EEECCHHHHHHHHHCC--CCEEECCHHHHH
T ss_conf 198899999999999878698699--9979899999999779--998989378999
No 212
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=94.88 E-value=0.17 Score=30.38 Aligned_cols=253 Identities=13% Similarity=0.153 Sum_probs=131.0
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHC---------------------CCCEEEEEEECCCCHHHCCCHHHHCCCCCC--
Q ss_conf 998873799989987799999999838---------------------997899999648980204553666087546--
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNN---------------------PSITLHSIIVRSGSPLIGQDVGNFVGISPM-- 57 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~---------------------~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~-- 57 (280)
|+.++|||+|+|-|..-+.+++.+... .|.++++.++... +.+|+|+.+.+.....
T Consensus 1 ~~~~~vrv~iiG~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~-~KVg~dl~Eai~~~~n~~ 79 (362)
T COG1260 1 STTTMVRVAIIGVGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDA-RKVGKDLSEAIKAPPNVT 79 (362)
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCH-HHCCHHHHHHHHCCCCCC
T ss_conf 9763588999842631888987789886268876624532330575756448997400127-553934999971677897
Q ss_pred ----------CCCCC---------CCHHHHHC--------------------CCCEEEEEEC---CCHHHHHHHHHHHCC
Q ss_conf ----------75455---------68578521--------------------3550476310---102478887643237
Q gi|254780279|r 58 ----------GIKFS---------DNLAMAIQ--------------------SVDGIIDFSS---PALTLQSLNISAQHN 95 (280)
Q Consensus 58 ----------~v~i~---------~dl~~~~~--------------------~~DViIDFT~---P~~~~~~~~~a~~~g 95 (280)
|+.+. ..+.+.++ .+|+++.|+. .+++.-+++.|++.|
T Consensus 80 ~~~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG 159 (362)
T COG1260 80 SKIAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAG 159 (362)
T ss_pred CEECCCCCCCCCEECCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 33205666679675356776764410555311232023356445035741467413135566222678999999999749
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHH---HHHHHHHHHHHHHHH----------HHCCCCCCHH-HHHHHHH
Q ss_conf 2157650222313589998740355521000011---568999999999998----------6115666008-9999864
Q gi|254780279|r 96 IVHIIGTTGFSVKENEVISSFARNAPIVKSSNMS---LGINFLGFLVETAAE----------YLLPAKDWDF-EILEMHH 161 (280)
Q Consensus 96 ~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~S---iGv~ll~~l~~~~a~----------~l~~~~~~di-eI~E~HH 161 (280)
.++|=++--|...+ ..+.+..++..+.++.+=- +|..++.+.+...-+ .|+.+.++|. -..+.-.
T Consensus 160 ~afvN~~P~~iA~d-P~~~~~fee~g~pi~GDD~ksq~GaTi~h~~La~~f~~Rgvkv~~t~Q~NigGN~Dflnl~~r~r 238 (362)
T COG1260 160 VAFVNAIPVFIASD-PAWVELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTYQLNIGGNTDFLNLLARER 238 (362)
T ss_pred CCEECCCCCCCCCC-HHHHHHHHHCCCCEECCCHHHHCCCCEEHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHCCHHH
T ss_conf 84030557623489-89999998759955556315422772208999999997496051589871377717777456345
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECC
Q ss_conf 16789986789999999985328876422111-23576765433456501375288205799998189958999999727
Q gi|254780279|r 162 RRKLDSPSGTALLLGEAIANGRKVNLTDHMVL-NRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYD 240 (280)
Q Consensus 162 ~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~ 240 (280)
...|-. |=|.. +.+.....+.+...+ +.........++ .+..+|. |-..|++---.|+++-++.|
T Consensus 239 ~~SKk~-SKts~-----V~sil~~~~~~~~~~I~ps~yv~~L~D~--K~a~~~i------e~~~F~g~~~~l~~~l~v~D 304 (362)
T COG1260 239 LESKKI-SKTSA-----VTSILGYKLGDKPIHIGPSDYVEPLGDR--KVAYMRI------EGKLFGGVPMNLEIKLEVED 304 (362)
T ss_pred HHHHHH-HHHHH-----HHHHHCCCCCCCCEEECCCCCCCCCCCC--EEEEEEE------EEEECCCCCEEEEEEEEEEC
T ss_conf 555242-27899-----9998544245787577723356525774--4899999------75433887358999988605
Q ss_pred HHHHH---HHHHHHHHHHHCCCCC--CCCHHHHH
Q ss_conf 37679---9999999998348998--36888982
Q gi|254780279|r 241 RRIFA---RGSLTAALWAKSQIPG--LYSMRDVL 269 (280)
Q Consensus 241 R~~Fa---~Gal~aa~~l~~~~~G--~y~m~dvL 269 (280)
--.-| --++++++...++.-| +|.+.-..
T Consensus 305 SpnsagliiD~vR~~k~a~drGi~G~v~~~say~ 338 (362)
T COG1260 305 SPNSAGLIIDLVRLAKLALDRGIGGPVYEVSAYF 338 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHH
T ss_conf 6024678999999999998657786233126655
No 213
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.88 E-value=0.37 Score=28.10 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=36.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCC-CCCCCCCHHHHHCCCCEEE-EE
Q ss_conf 73799989987799999999838997899999648980204553666087546-7545568578521355047-63
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPM-GIKFSDNLAMAIQSVDGII-DF 78 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~-~v~i~~dl~~~~~~~DViI-DF 78 (280)
..+|||+|+|.+||+++.+..+ =++++......++++.. ......-. ...-.+.+.+..+.+|||. +|
T Consensus 7 ~~tIGIlGgGQLgrMla~aA~~-lG~~v~vldp~~~~PA~-----~va~~~~~~~~~D~~al~~fa~~~DviT~E~ 76 (377)
T PRK06019 7 GKTIGIIGGGQLGRMLALAAAP-LGYKVIVLDPDADCPAA-----QVADRVIVADYDDVAALRELAEQCDVITYEF 76 (377)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCCCCCCHH-----HHCCEEEECCCCCHHHHHHHHHCCCEEEECC
T ss_conf 9999998786899999999997-89989998489849847-----8378489868898999999984599999781
No 214
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.87 E-value=0.37 Score=28.09 Aligned_cols=149 Identities=14% Similarity=0.145 Sum_probs=79.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-CCCHH--HHH-----CCCC-EEEE
Q ss_conf 7999899877999999998389978999996489802045536660875467545-56857--852-----1355-0476
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-SDNLA--MAI-----QSVD-GIID 77 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~~dl~--~~~-----~~~D-ViID 77 (280)
+|.|+|+||.||.+.+.+. ..+...+ ++|.+... .....+.|.++ +.|.. +.+ +++. +||-
T Consensus 402 ~VII~G~GR~Gq~var~L~-~~gi~~v-viD~d~~~--------V~~~r~~G~~v~yGDat~~~vL~~AGi~~A~~vVia 471 (602)
T PRK03659 402 QVIIVGFGRFGQVIGRLLM-ANKMRIT-VLERDISA--------VNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (602)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCHHH--------HHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEE
T ss_conf 9899788756899999999-7899989-99786799--------999997899089758999999986790405889998
Q ss_pred EECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHH-------HHHHHHCCCC
Q ss_conf 310102478887643237215765022231358999874035552100001156899999999-------9998611566
Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVE-------TAAEYLLPAK 150 (280)
Q Consensus 78 FT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~-------~~a~~l~~~~ 150 (280)
+..|+.+.+.++.+.++.-++-|=.-..+..+...|.++.-+ -++-..|-=+..+-.+.+. ++.+....|.
T Consensus 472 i~d~~~~~~iv~~~r~~~P~l~I~aRar~~~~~~~L~~~Ga~--~vv~Et~essL~l~~~~L~~lG~~~~~a~~~~~~f~ 549 (602)
T PRK03659 472 CNEPEDTMKLVELCQQHFPHLHILARARGRVEAHELLQAGVT--QFSRETFSSALELGRKTLVSLGMHPHQAQRAQLHFR 549 (602)
T ss_pred ECCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC--EEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 298999999999999878699699986978999999978999--786627899999999999980999999999999999
Q ss_pred CCHHHHHHHHHHCCCCC
Q ss_conf 60089999864167899
Q gi|254780279|r 151 DWDFEILEMHHRRKLDS 167 (280)
Q Consensus 151 ~~dieI~E~HH~~K~Da 167 (280)
..|-+..+..++...|-
T Consensus 550 ~~d~~~l~~~~~~~~d~ 566 (602)
T PRK03659 550 RLDMRMLRELIPQHNED 566 (602)
T ss_pred HHHHHHHHHHHHHCCCH
T ss_conf 99999999987633887
No 215
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.86 E-value=0.07 Score=33.01 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=59.7
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCC-HHHH-----HCCCC
Q ss_conf 998873799989987799999999838-9978999996489802045536660875467545568-5785-----21355
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN-LAMA-----IQSVD 73 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~d-l~~~-----~~~~D 73 (280)
|+ ++.||+|+|.|+.|..+.-.+..+ .-+|..+.+.-++. ..|.--. ..+|+..+.. ++-+ +.+.|
T Consensus 1 m~-sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~-sdglara-----arlgv~tt~egv~~ll~~p~~~di~ 73 (310)
T COG4569 1 MS-SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQ-SDGLARA-----ARLGVATTHEGVIGLLNMPEFADID 73 (310)
T ss_pred CC-CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEECCCCC-CCHHHHH-----HHCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 98-752599973686208899999854786563048734888-5077888-----8619852244789998399987765
Q ss_pred EEEEEECCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 04763101024788876432372157650
Q gi|254780279|r 74 GIIDFSSPALTLQSLNISAQHNIVHIIGT 102 (280)
Q Consensus 74 ViIDFT~P~~~~~~~~~a~~~g~~vViGT 102 (280)
.+.|.|+..+...+.....+.|++++-=|
T Consensus 74 lvfdatsa~~h~~~a~~~ae~gi~~idlt 102 (310)
T COG4569 74 LVFDATSAGAHVKNAAALAEAGIRLIDLT 102 (310)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 58852432034440577886498423056
No 216
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.78 E-value=0.069 Score=33.05 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=62.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
-+++|+|+|..++..++.+..-..++-+.+++|...+. ..+-+........+.+.++.++++..+|||+-.|+ +. .
T Consensus 126 ~~l~iiG~G~QA~~~l~a~~~v~~i~~v~v~~r~~~~a--~~~~~~~~~~~~~~~~~~~~~~av~~aDII~taT~-s~-~ 201 (313)
T PRK06141 126 RRLLVVGTGRLASLLALAHASVRPIKQVRVWGRNPAKA--AALAAELREQGFDAEVVTDLEAAVRQADIISCATL-ST-E 201 (313)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH--HHHHHHHHHCCCCEEEECCHHHHHHHCCEEEECCC-CC-C
T ss_conf 67999778899999999999728975899993898999--99999998509975995899998610877997168-89-8
Q ss_pred HHHH-HHHHCCCEEE-EEE
Q ss_conf 8887-6432372157-650
Q gi|254780279|r 86 QSLN-ISAQHNIVHI-IGT 102 (280)
Q Consensus 86 ~~~~-~a~~~g~~vV-iGT 102 (280)
..++ ..++-|.++. +|+
T Consensus 202 Pv~~~~~l~~G~hI~avGs 220 (313)
T PRK06141 202 PLVRGEWLRPGTHLDLVGS 220 (313)
T ss_pred CCCCCCCCCCCCEEEEECC
T ss_conf 6446444678726976358
No 217
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.74 E-value=0.18 Score=30.18 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=72.7
Q ss_pred CE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH------CCCHHHHCCC---C-------CCCCCCCCCHHH
Q ss_conf 73-79998998779999999983899789999964898020------4553666087---5-------467545568578
Q gi|254780279|r 5 PM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI------GQDVGNFVGI---S-------PMGIKFSDNLAM 67 (280)
Q Consensus 5 ~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~------g~d~~~~~~~---~-------~~~v~i~~dl~~ 67 (280)
+| ||+|+|+|-||..|+...+. .++.++ .+|.+..... .+.+...... . -..+..+.+++
T Consensus 312 ~i~~v~ViGaG~MG~GIA~~~a~-aG~~V~-l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~l~ri~~~~~~~- 388 (715)
T PRK11730 312 DVKQAAVLGAGIMGGGIAYQSAS-KGVPVI-MKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGVLSTITPTLDYA- 388 (715)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH-CCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCH-
T ss_conf 76279997877107999999995-799579-997899999999999999999998648998799999995687415402-
Q ss_pred HHCCCCEEEEEEC------------------CC-------HHHHHHHHHHHCCC----------------EE--EEEECC
Q ss_conf 5213550476310------------------10-------24788876432372----------------15--765022
Q gi|254780279|r 68 AIQSVDGIIDFSS------------------PA-------LTLQSLNISAQHNI----------------VH--IIGTTG 104 (280)
Q Consensus 68 ~~~~~DViIDFT~------------------P~-------~~~~~~~~a~~~g~----------------~v--ViGTTG 104 (280)
.+.++|+||+.-. |+ +++.+.+.+...+. ++ ||-+..
T Consensus 389 ~l~~~DlVIEAV~E~l~~K~~vf~~l~~~~~~~aIlAsNTSsl~i~~lA~~~~~Per~iG~HFfnP~~~m~LVEVv~g~~ 468 (715)
T PRK11730 389 GFKDVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK 468 (715)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCC
T ss_conf 43358889985436588999999999865587538851576577899997516821156522148844164488816899
Q ss_pred CCHHHHHHHHHHHC---CCCCEE--CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 23135899987403---555210--0001156899999999999861156660089999864167899867
Q gi|254780279|r 105 FSVKENEVISSFAR---NAPIVK--SSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSG 170 (280)
Q Consensus 105 ~~~e~~~~l~~~s~---~~~il~--apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSG 170 (280)
=+++.+....++++ +.||+. +|.|= +=-++..++..+...+.- +.+.+=++.--..----|-|
T Consensus 469 Ts~~t~~~~~~~~~~lgK~pVvv~d~pGFi-~NRil~~~~~ea~~l~~e--Ga~~~~ID~a~~~~~G~pmG 536 (715)
T PRK11730 469 TSDETIATVVAYASKMGKTPIVVNDCPGFF-VNRVLFPYFAGFSQLLRD--GADFRQIDKVMEKQFGWPMG 536 (715)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHCCCCCCC
T ss_conf 999999999999998198238982468605-878999999999999987--99999999999874799777
No 218
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.69 E-value=0.41 Score=27.80 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=74.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 73799989987799999999838997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
.|||.+.+.--.=+..++...+..++++...-. ..++++-+.++.+|.++=++.-...
T Consensus 1 m~Ki~~~~~~~~e~~~~~~~~~~~~~ev~~~~~----------------------~~~ee~i~~~~~~D~i~v~~~~~i~ 58 (332)
T PRK08605 1 MTKIKLMSVRDEDAPYIKAWAEKHHVEVDLTKE----------------------ALTDDNVEEVEGFDGLSLSQQIPLS 58 (332)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECC----------------------CCCHHHHHHHCCCCEEEEECCCCCC
T ss_conf 976999827665699999988865907999669----------------------9998999985799889997079779
Q ss_pred HHHHHHHHHCCCEEEE-EECCCCHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 7888764323721576-502223135899987403555210000115
Q gi|254780279|r 85 LQSLNISAQHNIVHII-GTTGFSVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 85 ~~~~~~a~~~g~~vVi-GTTG~~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
.+.++.+.+.|+.+|. ..+|++.=+++..++ +.++|..+|..+-
T Consensus 59 ~~vl~~~~~l~iK~I~r~gvG~DnIDl~~a~~--~gI~V~n~P~~~~ 103 (332)
T PRK08605 59 EAIYKLLNELGIKQIAQRSAGFDTYDLELANK--YNIIISNVPSYSP 103 (332)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH--CCCEEEECCCCCH
T ss_conf 99999666369779997772174546999997--9998995998684
No 219
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.68 E-value=0.16 Score=30.57 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=39.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCC-EEEEEEECCCCHHHC--CCHHHHCCCCCCCCCCCCC-HHHHHCCCCEEE
Q ss_conf 3799989987799999999838997-899999648980204--5536660875467545568-578521355047
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSI-TLHSIIVRSGSPLIG--QDVGNFVGISPMGIKFSDN-LAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~-eLv~~i~~~~~~~~g--~d~~~~~~~~~~~v~i~~d-l~~~~~~~DViI 76 (280)
+||+|+|+|+.|+.++-.+....-. || ..+|.......| .|+............+..+ -.+.++.+|+|+
T Consensus 1 ~KV~viGaG~VG~s~a~~l~~~~~~~el-~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVv 74 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSEL-VLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVV 74 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEE-EEEECCCCCCCCHHCCHHHCCHHCCCCEEEECCCCHHHHCCCCEEE
T ss_conf 9399989874789999999625556659-9997466656401102533400026761883478702316998999
No 220
>KOG0455 consensus
Probab=94.68 E-value=0.41 Score=27.78 Aligned_cols=166 Identities=15% Similarity=0.210 Sum_probs=89.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCC--------CEEEEEEECCCCHHHCCCHHHH-CC-------CCCCCCCC-CCCHH
Q ss_conf 87379998998779999999983899--------7899999648980204553666-08-------75467545-56857
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPS--------ITLHSIIVRSGSPLIGQDVGNF-VG-------ISPMGIKF-SDNLA 66 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~--------~eLv~~i~~~~~~~~g~d~~~~-~~-------~~~~~v~i-~~dl~ 66 (280)
++++|+++|||..|+.+++++..-.. +.++++++... .+..+|.... .+ +...+-.. -+++-
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~-~~~skD~~p~nl~sewk~~L~~st~~alsLdaLi 80 (364)
T KOG0455 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSES-LVASKDVLPENLNSEWKSELIKSTGSALSLDALI 80 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCCCCCCCHHHHCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 622089994560679999999877643116716999999941313-5043445700104599999987337855589999
Q ss_pred H-HHC--CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEE-CCCCH--HHHHHHHHHHCCCCCEECCCHHHHH--HHHHHH
Q ss_conf 8-521--35504763101024788876432372157650-22231--3589998740355521000011568--999999
Q gi|254780279|r 67 M-AIQ--SVDGIIDFSSPALTLQSLNISAQHNIVHIIGT-TGFSV--KENEVISSFARNAPIVKSSNMSLGI--NFLGFL 138 (280)
Q Consensus 67 ~-~~~--~~DViIDFT~P~~~~~~~~~a~~~g~~vViGT-TG~~~--e~~~~l~~~s~~~~il~apN~SiGv--~ll~~l 138 (280)
. ++. ..=++||.|......+...++.+.|+.++.-- -.|+. +..+.|-..++ .|-++-.--++|+ .+...+
T Consensus 81 a~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~-s~~fi~HEatVGAGLPiIs~L 159 (364)
T KOG0455 81 AKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSK-SPRFIRHEATVGAGLPIISSL 159 (364)
T ss_pred HHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHH
T ss_conf 9970899854998165179999999999864814834886555452899999985589-986277522146786169999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999986115666008999986416789986789999999985328
Q gi|254780279|r 139 VETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRK 184 (280)
Q Consensus 139 ~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~ 184 (280)
-+.++ .++ .|+=+ .-.-|||---+-+.+++++.
T Consensus 160 ~eiI~----tGD--ev~kI-------eGifSGTLsYifne~s~gk~ 192 (364)
T KOG0455 160 NEIIS----TGD--EVHKI-------EGIFSGTLSYIFNELSDGKP 192 (364)
T ss_pred HHHHH----CCC--CEEEE-------EEEEECCHHHHHHHHHCCCC
T ss_conf 99985----598--41688-------87860307888777605998
No 221
>cd04510 consensus
Probab=94.68 E-value=0.41 Score=27.78 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=41.7
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCC------CCEEEEEEECCCCH--HHCCCHHHHCCC--C-CCCCCCCCCHHHHHCCC
Q ss_conf 737999899-877999999998389------97899999648980--204553666087--5-46754556857852135
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNP------SITLHSIIVRSGSP--LIGQDVGNFVGI--S-PMGIKFSDNLAMAIQSV 72 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~------~~eLv~~i~~~~~~--~~g~d~~~~~~~--~-~~~v~i~~dl~~~~~~~ 72 (280)
|+||+|.|| |..|-.++-.+.+-+ .+.|. .++.+... ..|--. |+..+ + -.++.+++|.+++|+++
T Consensus 1 P~~V~VTGAAGqI~Y~Ll~~Ia~G~vfG~dq~V~L~-Lldi~~~~~~L~Gv~M-ELeDcAfPlL~~v~~t~d~~~AF~da 78 (334)
T cd04510 1 PLQVWITSASAPVCYHLIPHLASGDVFGMLTEISIH-LLDTSESEEMLKGLVM-EVFDLAFPLLREVSVHTDVMLAFQQA 78 (334)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEE-ECCCHHHHHHHHCEEE-EHHHCCCHHHCCEEEECCHHHHHCCC
T ss_conf 909999577379999999998478766999759999-6686667887533055-11404654338658857878973668
Q ss_pred CEEE
Q ss_conf 5047
Q gi|254780279|r 73 DGII 76 (280)
Q Consensus 73 DViI 76 (280)
|++|
T Consensus 79 d~ai 82 (334)
T cd04510 79 HVII 82 (334)
T ss_pred CEEE
T ss_conf 8899
No 222
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.65 E-value=0.16 Score=30.64 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=52.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
|||+|+|.|+-|+++++.+.+.... +-.-|+...+... ..+. ...+.-+.....+|++| -+|..-.
T Consensus 1 mKi~V~GlG~sG~s~a~~L~~~g~~--~i~dD~~~~~~~~-~~~~---------~~~~~~~~~~~~~d~vv--~SPGI~~ 66 (401)
T PRK03815 1 MKISLFGYGKTTKALARFFVKNGGV--DIYDDKFTEPKKD-EEGN---------LLLPSNDFDPNKSDLEI--PSPGIPP 66 (401)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCE--EEEECCCCCCCHH-HHHC---------CCCCHHHCCCHHCCEEE--ECCCCCC
T ss_conf 9399984777189999999948797--9998999862224-6404---------00684335801286899--8998599
Q ss_pred --HH----------HHHHHHCC--CEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf --88----------87643237--215765022231358999874035552100001156
Q gi|254780279|r 86 --QS----------LNISAQHN--IVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 86 --~~----------~~~a~~~g--~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280)
+. ++++.+.. +-.|.||-|=|.- -..+..+.++.....+.|.-.-
T Consensus 67 ~~p~~~~a~~i~seiel~~~~~~~~I~ITGTNGKsTt-t~li~~iL~~~g~~~~GNIG~P 125 (401)
T PRK03815 67 SHPLIQKAKNLISEYDYFYSFMPFSIWISGTNGKTTT-TQMLTHLLEDFGAVSGGNIGTP 125 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH-HHHHHHHHHHCCCCEECCCCHH
T ss_conf 8799998745414999998527874899847777899-9999999986698130416643
No 223
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=94.62 E-value=0.12 Score=31.40 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=82.9
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC-CCCEEEEEECCC
Q ss_conf 737999899-877999999998389978999996489802045536660875467545568578521-355047631010
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ-SVDGIIDFSSPA 82 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~-~~DViIDFT~P~ 82 (280)
+=+|.|+|+ |=.|+.++++..+-.++++.|--+|+++..= +.+ -+|.|||=|.|
T Consensus 151 ~~~lLIiGgAGGVGSI~iQLAR~LT~ltVIaTASRpEs~~W-----------------------v~~LGAH~VIDHskP- 206 (338)
T TIGR02817 151 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEW-----------------------VLELGAHHVIDHSKP- 206 (338)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHH-----------------------HHHCCCCEEECCCCC-
T ss_conf 87478973885178999999998549649997285789999-----------------------997399188658843-
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC---CCCCEECCCHHHHHHHHHH-HHH-----HHHHHHCCCCCCH
Q ss_conf 247888764323721576502223135899987403---5552100001156899999-999-----9998611566600
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFAR---NAPIVKSSNMSLGINFLGF-LVE-----TAAEYLLPAKDWD 153 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~---~~~il~apN~SiGv~ll~~-l~~-----~~a~~l~~~~~~d 153 (280)
...-++..--..+..|+ +|-+|+++.++|-++-+ +-.++==|- .|-|..|+. -+. +.+|-| |.=-|
T Consensus 207 -L~~ql~~L~l~~v~~V~-SlT~TDqH~~~ive~laPQGrlaLIDDP~-~LD~~~lK~KSiSlHWE~MfTRS~--f~T~D 281 (338)
T TIGR02817 207 -LKAQLEKLGLEAVSYVF-SLTHTDQHFKEIVELLAPQGRLALIDDPA-ELDVSPLKRKSISLHWEFMFTRSM--FQTED 281 (338)
T ss_pred -HHHHHHHHCCCCCCEEE-CCCHHHHHHHHHHHHHCCCCCEECCCCCC-CCCHHHHCHHHHHHHHHHHHCCCC--CCCHH
T ss_conf -68999982889985575-16607899999999856787400002870-016313210130211245541776--67466
Q ss_pred HHHHHHHHH
Q ss_conf 899998641
Q gi|254780279|r 154 FEILEMHHR 162 (280)
Q Consensus 154 ieI~E~HH~ 162 (280)
++|-||=
T Consensus 282 --mi~QH~L 288 (338)
T TIGR02817 282 --MIEQHEL 288 (338)
T ss_pred --HHHHHHH
T ss_conf --9999999
No 224
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=94.57 E-value=0.23 Score=29.53 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=50.8
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHH----C--CCCEEE
Q ss_conf 37999899-877999999998389978999996489802045536660875467545--56857852----1--355047
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAI----Q--SVDGII 76 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~----~--~~DViI 76 (280)
-+|.|.|+ |-.|.+.++.. +.-+.++++.+.++... +.-...|.....+.- ..|+.+.+ . .+|+++
T Consensus 106 ~~VlI~gg~G~vG~~aiqla-k~~Ga~Vi~t~~s~~k~----~~~~~lG~~~~~v~~~~~~~~~~~v~~~t~g~gvDvv~ 180 (288)
T smart00829 106 ESVLIHAAAGGVGQAAIQLA-QHLGAEVFATAGSPEKR----DFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVL 180 (288)
T ss_pred CEEEEECCCCHHHHHHHHHH-HHCCCCEEEEECCHHHH----HHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 99999789867779999999-97398300340888999----99997699960762179950999999870898827999
Q ss_pred EEECCCHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 63101024788876432372157650222313
Q gi|254780279|r 77 DFSSPALTLQSLNISAQHNIVHIIGTTGFSVK 108 (280)
Q Consensus 77 DFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e 108 (280)
|...-+...+.++.....|.-+.+|.+++...
T Consensus 181 d~vgg~~~~~~~~~l~~~G~~v~ig~~~~~~~ 212 (288)
T smart00829 181 NSLAGEFLDASLRCLAPGGRFVEIGKRDIRDN 212 (288)
T ss_pred ECCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 89868999999997536988999756666675
No 225
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.55 E-value=0.24 Score=29.41 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=75.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCH-HHHHCCCCEEEEEEC
Q ss_conf 8873799989987799999999838-99789999964898020455366608754675455685-785213550476310
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL-AMAIQSVDGIIDFSS 80 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl-~~~~~~~DViIDFT~ 80 (280)
.++|||.|+|.|+.+..=++.+.+. ..++++ ... ....+-++...+... .+..+. ...++.+++||-.|.
T Consensus 22 s~klkvLVVGGG~VA~RKi~~Ll~agA~VtVV---SP~----~~~el~~L~~~~~I~-~i~r~y~~~dL~~~~LVIaATd 93 (222)
T PRK05562 22 SNKIKVLVIGGGKAAFIKGKTFLKKGCYVEIL---SKE----FSKEFLDLKKYGNLK-LIKGNYDKEFIKDKHLIIIATD 93 (222)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE---CCC----CCHHHHHHHHCCCEE-EEECCCCHHHCCCCCEEEEECC
T ss_conf 26766999998799999999998789989998---786----688999999759869-9968679778088739999479
Q ss_pred -CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHH-HHHHHHCCCCCCH
Q ss_conf -102478887643237215765022231358999874035552100001156899999999-9998611566600
Q gi|254780279|r 81 -PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVE-TAAEYLLPAKDWD 153 (280)
Q Consensus 81 -P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~-~~a~~l~~~~~~d 153 (280)
++.-....+.|.+.++.+.+.+- ..... =.+-..-+.-|+.+|-+.+=+...+.+.++ ++..++ +.|+
T Consensus 94 d~~lN~~I~~~a~~~~ilvNvvdd-p~~~~-fi~Paiv~Rg~L~IAIST~G~SP~lAr~iR~klE~~~---pey~ 163 (222)
T PRK05562 94 DEELNNKIRKHCDRLYKLYIDCSD-FKKGL-CVIPYQRSSKNMVFALNTKGGSPKTSVFIGEKVKNFL---KKYD 163 (222)
T ss_pred CHHHHHHHHHHHHHHCCEEEECCC-CCCCC-EEECEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHH---HHHH
T ss_conf 889999999999980998898578-87681-7977099728979999899989799999999999987---8899
No 226
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.54 E-value=0.24 Score=29.35 Aligned_cols=82 Identities=21% Similarity=0.200 Sum_probs=42.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-HHH---CCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 379998998779999999983899789999964898-020---4553666087546754556857852135504763101
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-PLI---GQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-~~~---g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280)
|||+|+|+|-||..+.-.+.+.. +-|-.+.|+.. ..+ |-.+....+ ...-.....+..+....+|++|=++-.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlviv~vKa 77 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRRLEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLVIVTVKA 77 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEEECHHHHHHHHHCCEEEEECCC-CCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 95999878789999999998589--957998108999999878979981688-522443235673336788889998042
Q ss_pred CHHHHHHHH
Q ss_conf 024788876
Q gi|254780279|r 82 ALTLQSLNI 90 (280)
Q Consensus 82 ~~~~~~~~~ 90 (280)
-.+.+.++.
T Consensus 78 ~q~~~al~~ 86 (307)
T COG1893 78 YQLEEALPS 86 (307)
T ss_pred CCHHHHHHH
T ss_conf 238999999
No 227
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.44 E-value=0.098 Score=32.03 Aligned_cols=95 Identities=9% Similarity=0.159 Sum_probs=48.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 79998998779999999983899789999964898020455366608754675455685785213550476310102478
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTLQ 86 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~~ 86 (280)
||.|.+ ++-...++.+.+. +++.-.-+.. + .-.+.+.+.+.++|++|-........+
T Consensus 4 Kvlvt~--~i~~~~~~~L~~~--~~v~~~~~~~--~-----------------~~~~~l~~~i~~~d~li~~~~~~i~~~ 60 (333)
T PRK13243 4 RVFITR--EIPENGIEMLEEH--FEVEVWEDER--E-----------------IPREVLLEKVKDVDALVTMLSERIDAE 60 (333)
T ss_pred EEEEEC--CCCHHHHHHHHHC--CCEEEECCCC--C-----------------CCHHHHHHHHCCCCEEEECCCCCCCHH
T ss_conf 899969--8899999999717--9599926999--9-----------------999999998679829998588858899
Q ss_pred HHHHHHHCCCEEE-EEECCCCHHHHHHHHHHHCCCCCEECCCH
Q ss_conf 8876432372157-65022231358999874035552100001
Q gi|254780279|r 87 SLNISAQHNIVHI-IGTTGFSVKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 87 ~~~~a~~~g~~vV-iGTTG~~~e~~~~l~~~s~~~~il~apN~ 128 (280)
.++.|-+ ..+| ...+|++.=+++..++ +.++|..+|..
T Consensus 61 ~l~~ap~--LK~I~~~gvG~D~ID~~~a~~--~gI~V~ntpg~ 99 (333)
T PRK13243 61 VFEAAPR--LRIVANYAVGYDNIDVEEATK--RGIYVTNTPGV 99 (333)
T ss_pred HHHCCCC--CEEEEECCCCCCCCCHHHHHH--CCCEEEECCCC
T ss_conf 9946999--809988574643305999996--99789968996
No 228
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.43 E-value=0.19 Score=30.13 Aligned_cols=119 Identities=11% Similarity=0.128 Sum_probs=64.9
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEE--EECCCCHHHCCCHHHHCCCCCCCCCCC-CCHH-HHHCCCCEE
Q ss_conf 9988737999899-8779999999983899789999--964898020455366608754675455-6857-852135504
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSI--IVRSGSPLIGQDVGNFVGISPMGIKFS-DNLA-MAIQSVDGI 75 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~--i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~-~~~~~~DVi 75 (280)
|+ ++++||| || |-.|+.+++.+.+ .+|-+.-. +.+.. .-.|+.+ ...+..+. .+++ ..+.++|++
T Consensus 1 M~-~~~niAI-GATGaVG~~~l~iLee-r~fPv~~L~llas~~-~s~~~~i------~f~g~~v~~~~~~~f~~~~vdi~ 70 (323)
T PRK06901 1 MD-ATLNIAI-AAEFELSEKIVEALEE-SDLEISSISIVEIEP-FGEEQGI------RFNNKAVEQIAPDEVEWADFNYV 70 (323)
T ss_pred CC-CCCCEEE-ECCCHHHHHHHHHHHH-CCCCCCEEEEEEECC-CCCCCEE------EECCEEEEEECHHHCCCCCCCEE
T ss_conf 99-7641899-7666899999999997-599946087776326-6788579------98998999951213563248899
Q ss_pred EEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHH----------HHHHHHHHCCCCCEECCCHHHH
Q ss_conf 7631010247888764323721576502223135----------8999874035552100001156
Q gi|254780279|r 76 IDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKE----------NEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 76 IDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~----------~~~l~~~s~~~~il~apN~SiG 131 (280)
. |+-.+.+.+++..|.+.|.-+|=-|+.|-.+. -+.|+.+ ++-.|+-.||-|--
T Consensus 71 f-fAg~~~s~~~~p~A~~aG~vVIDnSSafRmd~dvPLVVPEVN~~~l~~~-~~~~IIANPNCsTi 134 (323)
T PRK06901 71 F-FAGKLEQVEHLAQAAEAGCIVIDMLGICAALANVPVVVPSVNDEQLAEL-RQRNIVSLPDPQVS 134 (323)
T ss_pred E-ECCCHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCEECCCCCHHHHHCC-HHCCEEECCCHHHH
T ss_conf 9-8582899999999998898999897565178998648067499998513-11798889982899
No 229
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.40 E-value=0.15 Score=30.72 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=55.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH-
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047631010247-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL- 85 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~- 85 (280)
||.|+|.|+-|.++++.+. ..+.++. +.|.++... ... ...++.+.+-....+..+|++| .+|..-.
T Consensus 11 ~v~v~GlG~sG~s~a~~L~-~~G~~V~-~~D~~~~~~---~~~-----~~~g~~~~~~~~~~~~~~~~iV--~SPGIp~~ 78 (457)
T PRK01390 11 TVALFGLGGSGLATARALK-AGGAEVI-AWDDNPDSV---AKA-----AAAGIATADLRTADWSQFAALV--LSPGVPLT 78 (457)
T ss_pred EEEEEEECHHHHHHHHHHH-HCCCEEE-EEECCCHHH---HHH-----HHCCCCCCCCCCCCCCCCCEEE--ECCCCCCC
T ss_conf 8999943699999999999-7899799-993992066---899-----8759831455412320387899--99988865
Q ss_pred -----HHHHHHHHCCCEE-------------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHHHHHHH
Q ss_conf -----8887643237215-------------------76502223135--8999874035--5521000011568999
Q gi|254780279|r 86 -----QSLNISAQHNIVH-------------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSLGINFL 135 (280)
Q Consensus 86 -----~~~~~a~~~g~~v-------------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~SiGv~ll 135 (280)
..++.|.++|+|+ |||.||=+-+. -..+..+-++ ..+..+.| ||..++
T Consensus 79 ~p~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN--IG~p~l 154 (457)
T PRK01390 79 HPKPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGN--IGTAIL 154 (457)
T ss_pred CCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC--CCHHHC
T ss_conf 6673199999998599186008999999873257898899928996498999999999973998699666--240111
No 230
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=94.34 E-value=0.35 Score=28.24 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=53.2
Q ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCC-------------C-CCCCCC---CCCHHH
Q ss_conf 7999899-877999999998389-97899999648980204553666087-------------5-467545---568578
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGI-------------S-PMGIKF---SDNLAM 67 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~-------------~-~~~v~i---~~dl~~ 67 (280)
||+|.|+ |-.|+..++.+.+++ ++++++..+.++....-+-+.++--. + .....+ .+.+.+
T Consensus 3 ~i~IlGsTGSIG~~tL~Vi~~~~~~f~v~~lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~~~~~~~~~~~~g~~~l~~ 82 (379)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRHPDRFRVVALSAGSNVELLAEQIREFRPKYVVVADEAAAKELKAALAGKVLAGEEGLCE 82 (379)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCEEECHHHHHH
T ss_conf 89998569588899999999586875899999289799999999994999999928899999987558828868899999
Q ss_pred HHC--CCCEEEEEECCCHHHHHHHHHHHCCCEEE
Q ss_conf 521--35504763101024788876432372157
Q gi|254780279|r 68 AIQ--SVDGIIDFSSPALTLQSLNISAQHNIVHI 99 (280)
Q Consensus 68 ~~~--~~DViIDFT~P~~~~~~~~~a~~~g~~vV 99 (280)
++. ++|++|-...--+.+...-.|+++|+.+-
T Consensus 83 ~~~~~~~D~vi~aisG~~GL~pt~~ai~~gk~la 116 (379)
T PRK05447 83 LAALPEADVVVAAIVGAAGLLPTLAAIKAGKRIA 116 (379)
T ss_pred HHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9736789999981343645799999997399389
No 231
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.34 E-value=0.084 Score=32.48 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=74.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HC-----CCHHHHCC---C-------CCCCCCCCCCHHHHHC
Q ss_conf 7999899877999999998389978999996489802-04-----55366608---7-------5467545568578521
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-IG-----QDVGNFVG---I-------SPMGIKFSDNLAMAIQ 70 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-~g-----~d~~~~~~---~-------~~~~v~i~~dl~~~~~ 70 (280)
||+|+|+|-||..|+.....+.+++++ ..|.+.... .+ +.+..... + .-.-+..+.|++ .+.
T Consensus 311 kv~ViGaG~MG~gIA~~~a~~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~-~~~ 388 (706)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVR-IKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYR-GFK 388 (706)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHH-HHC
T ss_conf 799986473238999999998698799-997999999999998899999998618999899999862241004412-315
Q ss_pred CCCEEEEEEC------------------CC-------HHHHHHHHHHHCCCE----------------E--EEEECCCCH
Q ss_conf 3550476310------------------10-------247888764323721----------------5--765022231
Q gi|254780279|r 71 SVDGIIDFSS------------------PA-------LTLQSLNISAQHNIV----------------H--IIGTTGFSV 107 (280)
Q Consensus 71 ~~DViIDFT~------------------P~-------~~~~~~~~a~~~g~~----------------v--ViGTTG~~~ 107 (280)
++|+||+.-. |+ +++.+.+.+.....| + ||-+-.=++
T Consensus 389 ~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~i~~la~~~~rP~r~iG~HFfnP~~~m~LVEVi~g~~Ts~ 468 (706)
T PRK11154 389 HADLVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSA 468 (706)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCH
T ss_conf 68879997145288899999999964798858950676776899998647841045544257744264279943789838
Q ss_pred HHHHHHHHHHC---CCCCEE--CCCHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf 35899987403---555210--000115689-9999999999861156660089999864167899867
Q gi|254780279|r 108 KENEVISSFAR---NAPIVK--SSNMSLGIN-FLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSG 170 (280)
Q Consensus 108 e~~~~l~~~s~---~~~il~--apN~SiGv~-ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSG 170 (280)
+.++...++++ +.||+. +|.|= +| ++..++..+.+.+.- +.+++=++.-- .+---|-|
T Consensus 469 et~~~~~~~~~~lgK~pv~v~d~pGFi--~NRil~~~~~ea~~l~~e--G~~~~~ID~a~-~~~G~pmG 532 (706)
T PRK11154 469 ETIATTVALAKKQGKTPIVVKDGAGFY--VNRILAPYMNEAARLLLE--GEPIEHIDAAL-VKFGFPVG 532 (706)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCH--HHHHHHHHHHHHHHHHHC--CCCHHHHHHHH-HHCCCCCC
T ss_conf 999999999997598789963237417--999999999999999976--99999999999-97599878
No 232
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=94.31 E-value=0.37 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=23.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 799989987799999999838997899999648
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRS 39 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~ 39 (280)
||+|+|+|.+|++++.+..+ =+++++. +|..
T Consensus 14 kIgIlGgGQLg~Mla~aA~~-LG~~viv-ld~~ 44 (395)
T PRK09288 14 RVMLLGSGELGKEVAIEAQR-LGVEVIA-VDRY 44 (395)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEE-ECCC
T ss_conf 89998988999999999998-7998999-8489
No 233
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=94.22 E-value=0.51 Score=27.10 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=51.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC--CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH---C--CCCEEEE
Q ss_conf 737999899877999999998389--97899999648980204553666087546754556857852---1--3550476
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP--SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI---Q--SVDGIID 77 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~--~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~---~--~~DViID 77 (280)
.=+|+|+|+|.+|+.+++.+.+++ +++++|.++-+... + .++++..+++++. + ++|-|+
T Consensus 144 ~r~v~IvG~~~~~~~l~~~i~~~p~~G~~vvG~~dd~~~~--~-----------~~~~~lG~~~~l~~~~~~~~id~V~- 209 (464)
T PRK10124 144 TRMVAVAGDLPAGQMLLESFRNQPWLGFEVVGVYHDPKPG--G-----------VSNDWAGNLQQLVEDAKAGKIHNVY- 209 (464)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCC--C-----------CCCCCCCCHHHHHHHHHHCCCCEEE-
T ss_conf 4389998388899999999972966796699996688766--6-----------7899878999999999868999899-
Q ss_pred EECCC----HHHHHHHHHHHCCCEEEE
Q ss_conf 31010----247888764323721576
Q gi|254780279|r 78 FSSPA----LTLQSLNISAQHNIVHII 100 (280)
Q Consensus 78 FT~P~----~~~~~~~~a~~~g~~vVi 100 (280)
++.|. -..+.+..|....+.+.+
T Consensus 210 ialp~~~~~~i~~lv~~l~~~~v~v~~ 236 (464)
T PRK10124 210 IAMSMCDGARVKKLVHQLADTTCSVLL 236 (464)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 966823688999999999618955999
No 234
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=94.16 E-value=0.3 Score=28.69 Aligned_cols=92 Identities=24% Similarity=0.306 Sum_probs=57.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CCCCCCCCHHHHHC--CCCEEEEEEC
Q ss_conf 87379998998779999999983899789999964898020455366608754-67545568578521--3550476310
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MGIKFSDNLAMAIQ--SVDGIIDFSS 80 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~v~i~~dl~~~~~--~~DViIDFT~ 80 (280)
+.|+|.|+|.-.=++.+++.+...+...++....-. |.++.+-.+-.. .|..-.+.+.+.++ ++|++||.|+
T Consensus 1 ~~~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~-----g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATH 75 (257)
T COG2099 1 SMMRILLLGGTSDARALAKKLAAAPVDIILSSLTGY-----GAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATH 75 (257)
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCC-----CCCCHHCCCCEEECCCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 983599982638999999986206861799970344-----424111058866527688789999999749888997887
Q ss_pred CCHH---HHHHHHHHHCCCEEEE
Q ss_conf 1024---7888764323721576
Q gi|254780279|r 81 PALT---LQSLNISAQHNIVHII 100 (280)
Q Consensus 81 P~~~---~~~~~~a~~~g~~vVi 100 (280)
|-+. .+.++.|.+.|+|.+-
T Consensus 76 PyAa~iS~Na~~aake~gipy~r 98 (257)
T COG2099 76 PYAARISQNAARAAKETGIPYLR 98 (257)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 57999989999999985996799
No 235
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. .
Probab=94.11 E-value=0.32 Score=28.49 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=51.0
Q ss_pred EE-EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH---CCCCEE---EEE
Q ss_conf 37-99989987799999999838997899999648980204553666087546754556857852---135504---763
Q gi|254780279|r 6 MR-ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI---QSVDGI---IDF 78 (280)
Q Consensus 6 Ik-V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~---~~~DVi---IDF 78 (280)
|| ++++|-||||..|.+.+. +.++++++ +++++... +...-......+. ++.|.+ ..+-|| |=-
T Consensus 1 MktlglIGLGrMG~ni~~rl~-~rgh~~vg-Yd~~q~av------~~~kG~d~~~gv~-nl~E~~~~l~~Pr~vWvMVPh 71 (341)
T TIGR00872 1 MKTLGLIGLGRMGANIAKRLA-DRGHEVVG-YDRDQAAV------EELKGEDRAEGVA-NLKELLKRLSAPRVVWVMVPH 71 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEE-ECCCHHHH------HHHHCCCCCCCCH-HHHHHHHCCCCCCEEEEECCC
T ss_conf 952443133467899999985-27946998-53887999------9972011343001-247888417999589986287
Q ss_pred E-CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 1-0102478887643237215765022231358999874
Q gi|254780279|r 79 S-SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSF 116 (280)
Q Consensus 79 T-~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~ 116 (280)
+ .-+++++.+.-.++.|=-+|=|=--|..+.++.-+++
T Consensus 72 gnivdaVl~~l~p~L~kGD~vIdgGNsyYkds~Rry~~l 110 (341)
T TIGR00872 72 GNIVDAVLRELAPLLEKGDIVIDGGNSYYKDSLRRYKEL 110 (341)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 367999999766676408889827865123347888768
No 236
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=94.09 E-value=0.14 Score=31.05 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=55.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
-+|+|+|+|+.|+.+++.+. .=++++.+ +++..... . ...++ ...++++++..+|+|+- ..|-.-
T Consensus 37 k~vgIiG~G~IG~~va~~l~-~fg~~V~~-~d~~~~~~-----~-----~~~~~-~~~~l~~ll~~sDii~~-~~plt~- 101 (176)
T pfam02826 37 KTVGIIGLGRIGRAVARRLK-AFGMKVIA-YDRYPKAE-----A-----EALGA-RYVSLDELLAESDVVSL-HLPLTP- 101 (176)
T ss_pred CEEEEECCCHHHHHHHHHHH-HHCCCEEE-ECCCCCCH-----H-----HHCCE-EECCHHHHHHHCCEEEE-CCCCCC-
T ss_conf 99999896999999999999-83981254-37987610-----2-----31571-66689999862998875-476742-
Q ss_pred HHHHHHHHCCCEEEEEECCC-CHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHH
Q ss_conf 88876432372157650222-313589998740355521000011568999999
Q gi|254780279|r 86 QSLNISAQHNIVHIIGTTGF-SVKENEVISSFARNAPIVKSSNMSLGINFLGFL 138 (280)
Q Consensus 86 ~~~~~a~~~g~~vViGTTG~-~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l 138 (280)
.|.++ +.+.++.+++ -+++ -|+|.|-.+=...
T Consensus 102 ---------------~T~~li~~~~l~~mk~----~a~l--IN~sRG~ivde~a 134 (176)
T pfam02826 102 ---------------ETRHLINAERLALMKP----GAIL--INTARGGLVDEDA 134 (176)
T ss_pred ---------------CCCCCCCHHHHHHHCC----CCEE--EEECCCCCCCHHH
T ss_conf ---------------0246346999985189----9889--9806755128999
No 237
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.05 E-value=0.18 Score=30.18 Aligned_cols=100 Identities=24% Similarity=0.268 Sum_probs=50.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH----HCCCHHHHCC----CCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 737999899877999999998389978999996489802----0455366608----75467545568578521355047
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL----IGQDVGNFVG----ISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~----~g~d~~~~~~----~~~~~v~i~~dl~~~~~~~DViI 76 (280)
.|||+|+|+|-||..+...+.+ .+.+++.+ +|.++.. .|-.+....+ ..+..+...++.. ...++|++|
T Consensus 2 mmkI~IiGaGAvG~~~a~~L~~-aG~~V~lv-~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi 78 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAA-AGADVTLI-GRARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPA-ALATADLVL 78 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCCEEEE-ECHHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHH-HCCCCCEEE
T ss_conf 4779998967999999999985-89987999-56789999996790996389976896366156148865-658999899
Q ss_pred EEECCCHHHHHHHHH---HHCCCEEEEEECCCCH
Q ss_conf 631010247888764---3237215765022231
Q gi|254780279|r 77 DFSSPALTLQSLNIS---AQHNIVHIIGTTGFSV 107 (280)
Q Consensus 77 DFT~P~~~~~~~~~a---~~~g~~vViGTTG~~~ 107 (280)
=++-...+.+.++.+ +..+-.+|.--=|+..
T Consensus 79 v~vKa~~~~~a~~~l~~~l~~~t~il~lQNGlg~ 112 (341)
T PRK08229 79 VTVKSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9707578899999998643899689995047771
No 238
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.01 E-value=0.22 Score=29.68 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=41.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280)
..|||+|+|+.|+.+++.+. .=+|.+.+ +|+..++ +.. ...+..-.+++++++..+|+|+-.
T Consensus 143 kTvGIiG~G~IG~~va~~l~-afgm~v~~-~d~~~~~----~~~-----~~~~~~~~~~Ld~lL~~aDiv~lh 204 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLK-AFGMKVIG-YDPYSPR----ERA-----GVDGVVGVDSLDELLAEADILTLH 204 (324)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEE-ECCCCCC----CCC-----CCCCCEECCCHHHHHHHCCEEEEC
T ss_conf 88999898789999999998-67986999-8898860----001-----235631102699998769999983
No 239
>KOG0069 consensus
Probab=94.00 E-value=0.4 Score=27.84 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=31.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 799989987799999999838997899999648980204553666087546754556857852135504763
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280)
+|+|+|+||.|+.+++.+.... ..+.+- .|..-+ .....+ .+. . ..|.++.+.++|+||-.
T Consensus 164 ~vgilG~G~IG~~ia~rL~~Fg-~~i~y~-~r~~~~--~~~~~~-~~~-----~-~~d~~~~~~~sD~ivv~ 224 (336)
T KOG0069 164 TVGILGLGRIGKAIAKRLKPFG-CVILYH-SRTQLP--PEEAYE-YYA-----E-FVDIEELLANSDVIVVN 224 (336)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEE-CCCCCC--HHHHHH-HCC-----C-CCCHHHHHHHCCEEEEE
T ss_conf 7999627478899999635326-625541-135776--366887-435-----4-36788887328879992
No 240
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.92 E-value=0.14 Score=30.98 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=40.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
.+++|+|+|+.|+.+++...+-=++++.+ +++..++ +.. ..+...++++++++.+|+|.
T Consensus 147 ktvGIiG~G~IG~~vak~~a~~fgm~vi~-yd~~~~~----~~~-------~~~~~~~~l~ell~~sDiIs 205 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGCDVVA-YDPFPNA----KAA-------TYVDYKDTIEEAVEGADIVT 205 (332)
T ss_pred CEEEEEEEEHHHHHHHHHHHHHCCCEEEE-ECCCCCH----HHH-------HCCEECCCHHHHHHHCCEEE
T ss_conf 78999974368899999998756982678-7788765----566-------20702168999986499999
No 241
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=93.90 E-value=0.28 Score=28.87 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=54.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC------CHHHC---CCHH----H----H-CCC------CCCCCCC-
Q ss_conf 7999899877999999998389978999996489------80204---5536----6----6-087------5467545-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG------SPLIG---QDVG----N----F-VGI------SPMGIKF- 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~------~~~~g---~d~~----~----~-~~~------~~~~v~i- 61 (280)
+|+|+|.|-.|.-+++++....==+| -.+|.++ +..+. .++| + . ..+ ......+
T Consensus 32 ~V~VvGiGGVGSw~veALaRsGig~i-tlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t 110 (263)
T COG1179 32 HVCVVGIGGVGSWAVEALARSGIGRI-TLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFIT 110 (263)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEE-EEEECHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 48999458453999999998188818-99712010222321266776623143789999999986198746760576606
Q ss_pred CCCHHHHHC-CCCEEEEEE-CCCHHHHHHHHHHHCCCEEEE
Q ss_conf 568578521-355047631-010247888764323721576
Q gi|254780279|r 62 SDNLAMAIQ-SVDGIIDFS-SPALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 62 ~~dl~~~~~-~~DViIDFT-~P~~~~~~~~~a~~~g~~vVi 100 (280)
.+++++.+. ++|-|||.. +-.+=.+.+.+|.++++|+|+
T Consensus 111 ~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs 151 (263)
T COG1179 111 EENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS 151 (263)
T ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 85699981689987998132037789999999985997796
No 242
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.88 E-value=0.2 Score=29.85 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=56.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH-
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047631010247-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL- 85 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~- 85 (280)
||.|+|.|+-|+++++.+.+ .+..+. +.|.+....... ........+..++..+++|+|| .+|..-.
T Consensus 5 kvlV~GlG~SG~s~a~~L~~-~g~~v~-~~D~~~~~~~~~--------~~~~~~~~~~~~~~~~~~d~vv--~SPGi~~~ 72 (418)
T PRK00683 5 RVVVLGLGVTGKSVARFLAQ-KGVYVI-GVDNSLEALQSC--------PYIHERYLEGAEEFPEQVDLVV--RSPGIKPY 72 (418)
T ss_pred EEEEEEECHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHC--------CHHHHHCCCCHHHCCCCCCEEE--ECCCCCCC
T ss_conf 69998088879999999997-829899-982981454546--------1455540562332423498999--89985998
Q ss_pred -HHHHHHHHCCCE--------------------EEEEECCCCHHHHHHHHHHHC--CCCCEECCCHHHHHHHHHH
Q ss_conf -888764323721--------------------576502223135899987403--5552100001156899999
Q gi|254780279|r 86 -QSLNISAQHNIV--------------------HIIGTTGFSVKENEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280)
Q Consensus 86 -~~~~~a~~~g~~--------------------vViGTTG~~~e~~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280)
+.++.|.++++| -|.||.|=|.- -..+...-+ ..+...+.|. |..++..
T Consensus 73 ~p~~~~a~~~~i~i~seiel~~~~~~~~~~~~IaITGTNGKTTT-t~ll~~iL~~~g~~~~~~GNI--G~p~l~~ 144 (418)
T PRK00683 73 HPWVEAAVALKIPVVTDIQLAFQTPEFQRYPSLGITGSTGKTTT-ILFLEHLLRTLGIPAFAMGNI--GLPILDG 144 (418)
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEH-HHHHHHHHHHCCCCCEEEECC--CHHHHHH
T ss_conf 89999999869975407999974244147987999768986609-999999998679981888034--6577764
No 243
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=93.79 E-value=0.35 Score=28.23 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCC-EEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH----C--CCCEEEEEE-CCCHHHHH
Q ss_conf 799999999838997-899999648980204553666087546754556857852----1--355047631-01024788
Q gi|254780279|r 16 MGQALIKEIHNNPSI-TLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI----Q--SVDGIIDFS-SPALTLQS 87 (280)
Q Consensus 16 MG~~ii~~i~~~~~~-eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~----~--~~DViIDFT-~P~~~~~~ 87 (280)
+|...++... .-+. +++ +++++..+. +.....|....-..-.++..+.+ . .+|++||++ .+......
T Consensus 2 iG~~~iq~ak-~~Ga~~Vi-~~~~~~~r~---~~a~~lGa~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~ 76 (131)
T pfam00107 2 VGLAAVQLAK-ALGAARVI-AVDRSEEKL---ELAKELGADHVINYRDEDFVERVRELTGGRGVDVVIDCVGAPATLEQA 76 (131)
T ss_pred HHHHHHHHHH-HCCCCEEE-EEECCHHHH---HHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 5899999999-84998799-996988999---999975997323533221245565404997764988668866679999
Q ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 8764323721576502223135899987403555210000115
Q gi|254780279|r 88 LNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 88 ~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
++.+...|.-+++|.++-.+..+....-..+.+.+..+...+.
T Consensus 77 ~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~k~i~i~Gs~~~~~ 119 (131)
T pfam00107 77 LELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGGR 119 (131)
T ss_pred HHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCEEEEEECCCCH
T ss_conf 8753599789999467899740538999869859999814899
No 244
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.78 E-value=0.27 Score=28.98 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=39.8
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC--CCHHHHHCCCCEEEEE
Q ss_conf 99887379998998779999999983899789999964898020455366608754675455--6857852135504763
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS--DNLAMAIQSVDGIIDF 78 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~--~dl~~~~~~~DViIDF 78 (280)
|+=+-=||.|+|.|+-|.++++.+. ..+.++.+ .|.+..+. ...+.... ..++.+. ...+.....+|+||
T Consensus 1 m~~~~k~v~viGlG~sG~s~a~~L~-~~G~~v~~-~D~~~~~~---~~~~~~~~-~~~i~~~~g~~~~~~~~~~d~vV-- 72 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLR-KNGAEVAA-YDAELKAE---RVAQIGKM-FDGLVFYTGRLKDALDNGFDILA-- 72 (445)
T ss_pred CCCCCCEEEEEEECHHHHHHHHHHH-HCCCEEEE-EECCCCCC---HHHHHHHC-CCCCEEEECCCHHHHCCCCCEEE--
T ss_conf 9979998999998999999999999-78991999-97999953---18999743-69968993786365015999999--
Q ss_pred ECCCH
Q ss_conf 10102
Q gi|254780279|r 79 SSPAL 83 (280)
Q Consensus 79 T~P~~ 83 (280)
.+|..
T Consensus 73 ~SPgI 77 (445)
T PRK04308 73 LSPGI 77 (445)
T ss_pred ECCCC
T ss_conf 89953
No 245
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.74 E-value=0.19 Score=29.99 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=38.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280)
.++||+|.||.|+++++... -=++++.+ .++...+... ...+..+.+ +++++..+|+|+--
T Consensus 147 ktvGIiG~GrIG~avA~r~~-~Fgm~v~y-~~~~~~~~~~---------~~~~~~y~~-l~ell~~sDii~l~ 207 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLK-GFGMKVLY-YDRSPNPEAE---------KELGARYVD-LDELLAESDIISLH 207 (324)
T ss_pred CEEEEECCCHHHHHHHHHHH-CCCCEEEE-ECCCCCHHHH---------HHCCCEECC-HHHHHHHCCEEEEE
T ss_conf 88899784889999999872-17968998-6688745557---------405860416-89999769999997
No 246
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=93.72 E-value=0.38 Score=27.98 Aligned_cols=102 Identities=17% Similarity=0.327 Sum_probs=46.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CCCCC-CCCHHHH-HCCCCEEEEEE-CCCH
Q ss_conf 9998998779999999983899789999964898020455366608754-67545-5685785-21355047631-0102
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MGIKF-SDNLAMA-IQSVDGIIDFS-SPAL 83 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~v~i-~~dl~~~-~~~~DViIDFT-~P~~ 83 (280)
|.|+|+|++|+.+++.+.+.. ++ -+++++..... .+.+ .+..- .|-.. .+.++++ ++.+|.+|=.| .++.
T Consensus 1 viI~G~g~~G~~la~~L~~~~--~v-~vId~d~~~~~--~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d~~ 74 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG--PV-VVIDKDPERVE--ELRE-EGVPVVVGDATDEEVLEEAGIEDADAVVAATGDDEA 74 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC--CE-EEEECCHHHHH--HHHH-CCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHH
T ss_conf 999878889999999998089--99-99999879987--7886-698699995688667876192028799996298499
Q ss_pred HHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 4788876432-37215765022231358999874
Q gi|254780279|r 84 TLQSLNISAQ-HNIVHIIGTTGFSVKENEVISSF 116 (280)
Q Consensus 84 ~~~~~~~a~~-~g~~vViGTTG~~~e~~~~l~~~ 116 (280)
.......+.+ ++..-|+ +.--+++..+.++++
T Consensus 75 n~~~~~~~r~~~~~~~ii-ar~~~~~~~~~l~~~ 107 (115)
T pfam02254 75 NILIVLLARELNPAKKII-ARANDPEHAELLRRL 107 (115)
T ss_pred HHHHHHHHHHHCCCCEEE-EEECCHHHHHHHHHC
T ss_conf 999999999978998099-998789999999976
No 247
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=93.68 E-value=0.64 Score=26.43 Aligned_cols=84 Identities=18% Similarity=0.311 Sum_probs=54.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCC---HHHHHC--CCCEEEEE
Q ss_conf 379998998779999999983899--78999996489802045536660875467545568---578521--35504763
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPS--ITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN---LAMAIQ--SVDGIIDF 78 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~--~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~d---l~~~~~--~~DViIDF 78 (280)
=||.|+|+|..|+.+++.+.+++. ++++|.++.+... + ....++++..+ +.+.++ .+|-|| +
T Consensus 129 rrvLIIG~g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~--~--------~~~~~~pvlg~~~~l~~~i~~~~ideVi-i 197 (451)
T TIGR03023 129 RRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDA--R--------TGVRGVPVLGKLDDLEELIREGEVDEVY-I 197 (451)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCC--C--------CCCCCCCCCCCHHHHHHHHHHCCCCEEE-E
T ss_conf 549999686899999999971943684899998388544--4--------4457997369899999999967998899-9
Q ss_pred ECC----CHHHHHHHHHHHCCCEEEE
Q ss_conf 101----0247888764323721576
Q gi|254780279|r 79 SSP----ALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 79 T~P----~~~~~~~~~a~~~g~~vVi 100 (280)
+.| +...+.+..|.+.++.+.+
T Consensus 198 a~~~~~~~~~~~li~~~~~~~v~v~~ 223 (451)
T TIGR03023 198 ALPLAAEKRILELLDALEDLTVDVRL 223 (451)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 54835568999999998645987999
No 248
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.66 E-value=0.57 Score=26.79 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCCC-CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 9988-737999899877999999998389978999996489802045536660875467545568578521355047631
Q gi|254780279|r 1 MHQS-PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 1 M~~~-~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT 79 (280)
|++- -=||.|+|.|+-|.++++.+.+ .+.++.+. |.+.++..-..+.+ ...+......++.+..+|+|| -
T Consensus 1 ~~d~~~k~v~V~GlG~sG~s~~~~L~~-~G~~v~~~-D~~~~~~~~~~l~~-----~~~~~~g~~~~~~~~~~d~vV--~ 71 (438)
T PRK03806 1 MADYQGKNVVIIGLGLTGLSCVDFFLA-RGVTPRVM-DTRMTPPGLDKLPE-----NVERHTGSLNDEWLLAADLIV--A 71 (438)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHH-CCCEEEEE-ECCCCCHHHHHHHC-----CCCEEECCCCHHHHCCCCEEE--E
T ss_conf 977789989999457888999999997-89969999-89999005788645-----884665777966806799999--8
Q ss_pred CCCHH--HHHHHHHHHCCCEE
Q ss_conf 01024--78887643237215
Q gi|254780279|r 80 SPALT--LQSLNISAQHNIVH 98 (280)
Q Consensus 80 ~P~~~--~~~~~~a~~~g~~v 98 (280)
+|..- .+.++.+.++|+|+
T Consensus 72 SPGI~~~~p~~~~a~~~~i~i 92 (438)
T PRK03806 72 SPGIALAHPSLSAAADAGVEI 92 (438)
T ss_pred CCCCCCCCHHHHHHHHCCCCE
T ss_conf 997899898999999879947
No 249
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.63 E-value=0.65 Score=26.38 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=68.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHH---HCCCC-------------CCCCCCCCCHH
Q ss_conf 737999899877999999998389978999996489802--0455366---60875-------------46754556857
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGN---FVGIS-------------PMGIKFSDNLA 66 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~---~~~~~-------------~~~v~i~~dl~ 66 (280)
..+|+|-|+|++|+..++.+.+ .+..++++.|++..-+ .|-|+.. ....+ ..+....++.+
T Consensus 38 g~~vaIQGfGnVG~~aA~~l~e-~GakvVaVsD~~G~i~~~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 116 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLE-LGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKK 116 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEECCCCC
T ss_conf 9999998977999999999997-799799998578508879999889999999999746871024441389856638975
Q ss_pred HHHCCCCEEEEEECCCHH-HHHHHHHHHCCCEEEE-EECCCC-HHHHHHHHHHHCCCCCEECCCH
Q ss_conf 852135504763101024-7888764323721576-502223-1358999874035552100001
Q gi|254780279|r 67 MAIQSVDGIIDFSSPALT-LQSLNISAQHNIVHII-GTTGFS-VKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 67 ~~~~~~DViIDFT~P~~~-~~~~~~a~~~g~~vVi-GTTG~~-~e~~~~l~~~s~~~~il~apN~ 128 (280)
..-.+|||+|=+...... .++++....++..+|+ |.-|-+ ++-.+.|.+ + .|++.|-+
T Consensus 117 ~~~~~cDIliPaA~en~I~~~nA~~i~a~~ck~IvEgANgP~T~eAd~iL~~--k--GI~viPDi 177 (254)
T cd05313 117 PWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQ--A--GVLFAPGK 177 (254)
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH--C--CCEEECHH
T ss_conf 1330476997435466789999999996798299865889998789999998--8--98896805
No 250
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.63 E-value=0.24 Score=29.33 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=73.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
.||.+.+.-.-=+...+...+..++++...-+ ..+.+.-+..+.+|.|+=|+.-....
T Consensus 2 ~Ki~~~~~~~~e~~~~~~~~~~~~~e~~~~~~----------------------~~~~~~~~~~~~~d~v~~~~~~~i~~ 59 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKE----------------------LLSSATVDQLKDYDGVTTMQFGKLEN 59 (330)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCEEEEEECC----------------------CCCHHHHHHHCCCCEEEEEECCCCCH
T ss_conf 66999837686699999988774906999569----------------------89989999847999899960797899
Q ss_pred HHHHHHHHCCCEEEE-EECCCCHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 888764323721576-5022231358999874035552100001156
Q gi|254780279|r 86 QSLNISAQHNIVHII-GTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 86 ~~~~~a~~~g~~vVi-GTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280)
+.++.+.+.|..+|. .++||+.=+++..++ +.+.|...|..+--
T Consensus 60 evl~~l~~~~LK~I~~~gvG~D~IDl~aa~~--~GI~V~n~P~~~~~ 104 (330)
T PRK12480 60 DVYPKLESYGIKQIAQRTAGFDMYDLDLAKK--HNIVISNVPSYSPE 104 (330)
T ss_pred HHHHHHHHCCCEEEEECCEECCHHCHHHHHH--CCCEEEECCCCCHH
T ss_conf 9999655679759998772175216999997--89999959986828
No 251
>KOG1494 consensus
Probab=93.61 E-value=0.12 Score=31.36 Aligned_cols=73 Identities=23% Similarity=0.398 Sum_probs=55.1
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CCCCCCCCHHHHHCCCCEEE
Q ss_conf 8737999899-8779999999983899789999964898020455366608754-67545568578521355047
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~v~i~~dl~~~~~~~DViI 76 (280)
...||+|.|+ |-.||-+.-++..++.+.--+.+|-.+.+-++.|++-.--... .+..=.+.++.+++.+||||
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVv 101 (345)
T KOG1494 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVV 101 (345)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEE
T ss_conf 762499973487667568999742855230133320369862022001678871312678367898753897899
No 252
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=93.60 E-value=0.66 Score=26.33 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=55.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC---CHHHHHC--CCCEEEE
Q ss_conf 7379998998779999999983899--7899999648980204553666087546754556---8578521--3550476
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPS--ITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD---NLAMAIQ--SVDGIID 77 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~--~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~---dl~~~~~--~~DViID 77 (280)
.-||.|+|+|..|+.+++.+.++++ ++++|.++.+++. + ....++++.. ++.+.++ ++|.|+
T Consensus 125 ~rrvlIIG~g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~--~--------~~~~~~p~lg~~~~l~~~i~~~~ideVi- 193 (445)
T TIGR03025 125 LRRVLIVGTGELAEELAAALSRNPDLGYRVVGFVDDRPED--R--------VEVAGLPVLGKLDDLVELVRAHRVDEVI- 193 (445)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCC--C--------CCCCCCCCCCCHHHHHHHHHHCCCCEEE-
T ss_conf 7239999084899999999982846884899997787544--4--------5567886018899999999976998899-
Q ss_pred EECCC----HHHHHHHHHHHCCCEEEEE
Q ss_conf 31010----2478887643237215765
Q gi|254780279|r 78 FSSPA----LTLQSLNISAQHNIVHIIG 101 (280)
Q Consensus 78 FT~P~----~~~~~~~~a~~~g~~vViG 101 (280)
++.|. ...+.+..|...++.+.+-
T Consensus 194 Ia~p~~~~~~~~~~l~~~~~~~v~v~~i 221 (445)
T TIGR03025 194 IALPLSEEARILELLLQLSDLGVDVRLV 221 (445)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9658677689999999987559789995
No 253
>KOG4354 consensus
Probab=93.59 E-value=0.33 Score=28.38 Aligned_cols=130 Identities=18% Similarity=0.283 Sum_probs=66.4
Q ss_pred CCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCC-CCCCHHHHHC-C-CCEEEE
Q ss_conf 988737999899-87799999999838997899999648980204553666087546754-5568578521-3-550476
Q gi|254780279|r 2 HQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIK-FSDNLAMAIQ-S-VDGIID 77 (280)
Q Consensus 2 ~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~-i~~dl~~~~~-~-~DViID 77 (280)
.++++||+++|| |-.|+.+++++..+|-+++.-+..|. ..|+.+..+....-.... .+.|...+-. . .|-++
T Consensus 16 ~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssre---l~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wv- 91 (340)
T KOG4354 16 PEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRE---LAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWV- 91 (340)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEHHH---HCCCCCCCCCHHHEEECCCCHHHHHHHHCCCCEEEEE-
T ss_conf 689825998733665416699886389736888632254---3477156743221232344246678762577645566-
Q ss_pred EECCCHHHH-HHHHH-HHCCCEEEEEEC-------------CCCHH-HHHHHHHHHCC-CCCEECCCHHHHHHHH
Q ss_conf 310102478-88764-323721576502-------------22313-58999874035-5521000011568999
Q gi|254780279|r 78 FSSPALTLQ-SLNIS-AQHNIVHIIGTT-------------GFSVK-ENEVISSFARN-APIVKSSNMSLGINFL 135 (280)
Q Consensus 78 FT~P~~~~~-~~~~a-~~~g~~vViGTT-------------G~~~e-~~~~l~~~s~~-~~il~apN~SiGv~ll 135 (280)
|..|..+.+ .+... ..+++..+|.-+ |+.+- +.+.|+.+.+- .|=.|+.---+++.-+
T Consensus 92 maLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~na~~iaNPGCYaTgsQl~l~Pl 166 (340)
T KOG4354 92 MALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKNARLIANPGCYATGSQLPLVPL 166 (340)
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCHHEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 525415678888887623771466311033347754020106710043888754040269973245672564477
No 254
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.50 E-value=0.69 Score=26.23 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=56.0
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH----C--CCCEEEEE
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852----1--35504763
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI----Q--SVDGIIDF 78 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~----~--~~DViIDF 78 (280)
=+|.|.|+ |-.|...++..+..-. ..+....++.....-++++...-+. ....|+.+.+ . .+|+++|-
T Consensus 144 ~~VLv~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~----y~~~d~~~~v~~~t~g~gvDvv~D~ 218 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVIN----YREEDFVEQVRELTGGKGVDVVLDT 218 (326)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCCEEEE----CCCCCHHHHHHHHHCCCCCCEEEEC
T ss_conf 9799977854699999999998499-5899981757889998739988970----5642489999998379987889979
Q ss_pred ECCCHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 10102478887643237215765022
Q gi|254780279|r 79 SSPALTLQSLNISAQHNIVHIIGTTG 104 (280)
Q Consensus 79 T~P~~~~~~~~~a~~~g~~vViGTTG 104 (280)
.-.+.....+......|.-+.+|.++
T Consensus 219 vG~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 219 VGGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 86799999999742595899980688
No 255
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=93.47 E-value=0.19 Score=30.09 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=65.3
Q ss_pred EEEEECCCHHHH--HHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCC-CCCCH--HHHHCCCCEEEEEECC
Q ss_conf 799989987799--999999838997899999648980204553666087546754-55685--7852135504763101
Q gi|254780279|r 7 RISVLGGGRMGQ--ALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIK-FSDNL--AMAIQSVDGIIDFSSP 81 (280)
Q Consensus 7 kV~I~GaGkMG~--~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~-i~~dl--~~~~~~~DViIDFT~P 81 (280)
||.|+|.||-|+ ++++.+.+ .+..+...-.+.... . ...........++. ...+. .+...++|+|| .+|
T Consensus 1 ~i~i~GlG~tG~G~a~a~~L~~-~g~~~~~~D~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~vv--~SP 74 (476)
T TIGR01087 1 KILILGLGKTGRGVAVARFLKK-KGAEVTVTDDDPEEE-L--ERSKGQLKLSEGVVLYTGGKDDLEDLNNADLVV--LSP 74 (476)
T ss_pred CEEEEEECCCCHHHHHHHHHHH-CCCEEEEEECCCCCC-C--CCHHHHCCCCCCEEEEECCCCCCCCCCCCEEEE--ECC
T ss_conf 9789986751078999999997-298799998452213-4--311331245564135326753101233420799--789
Q ss_pred CHHH--HHHHHHHHCCCEE---------------------EEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHH
Q ss_conf 0247--8887643237215---------------------765022231358999874035--55210000115689999
Q gi|254780279|r 82 ALTL--QSLNISAQHNIVH---------------------IIGTTGFSVKENEVISSFARN--APIVKSSNMSLGINFLG 136 (280)
Q Consensus 82 ~~~~--~~~~~a~~~g~~v---------------------ViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280)
..-. +.++.|.+.|+|+ |.||.|=|. .-..+..+.+. .+.+.+.|. |+..|.
T Consensus 75 Gi~~~hp~~~~a~~~g~~v~gdi~L~~~~~~~~~~~~~~aITGTnGKtT-TT~L~~~~L~~~G~~a~~gGNI--G~p~L~ 151 (476)
T TIGR01087 75 GIPPDHPLVQAAAKRGIPVVGDIELALRLVDFPEPAKVVAITGTNGKTT-TTSLLYHLLKAAGLKAVLGGNI--GTPALE 151 (476)
T ss_pred CCCCCCHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEEEEECCCCHHH-HHHHHHHHHHHCCCCEEEECCC--CCHHHH
T ss_conf 8986777999999669808986799997415789873799972686079-9999999998469977862578--812555
No 256
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.47 E-value=0.3 Score=28.71 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=37.4
Q ss_pred CHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 8578521355047631010247888764323721576502223135899987403555210000115
Q gi|254780279|r 64 NLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 64 dl~~~~~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
.+-+-++++|++|- +.-....+.++.|-+. +-+....||++.=+++..++ +.|+|..+|..+-
T Consensus 37 el~e~i~dad~ii~-~~~~i~~~vl~~ap~L-K~I~~~g~G~D~ID~~aa~~--~gI~V~n~pg~~~ 99 (314)
T PRK06932 37 QTIERAKDADIVIT-SKVIFSRETLQQLPKL-KLIAITATGTNNVDLVAAKE--LGITVKNVTGYSS 99 (314)
T ss_pred HHHHHHCCCCEEEE-CCCCCCHHHHHCCCCC-EEEEECCCCCCCCCHHHHHH--CCEEEEECCCCCH
T ss_conf 99998579989997-8986399999539998-09988983456478999974--9979993898672
No 257
>PRK12367 short chain dehydrogenase; Provisional
Probab=93.42 E-value=0.23 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=25.7
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 7999899-8779999999983899789999964
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVR 38 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~ 38 (280)
+|+|.|| |-.|+++.+... ..+..++|....
T Consensus 19 tIgITGAsGaLG~AL~k~f~-~~GakVIalTh~ 50 (250)
T PRK12367 19 RIGITGASGALGKALTKLFR-AKGAKVIGLTHS 50 (250)
T ss_pred EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECC
T ss_conf 79996787389999999999-889989998368
No 258
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.39 E-value=0.26 Score=29.07 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=39.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280)
-+|+|+|+|+.|+.+++... .=++++.+ ++|.... ........++++++..+|+|+-.
T Consensus 123 ktvGIiG~G~IG~~vA~~~~-afg~~V~~-~~r~~~~-------------~~~~~~~~~~~ell~~sDivslh 180 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAK-AFGMNIYA-YTRSYVN-------------DGISSIYMEPEDIMKKSDFVLIS 180 (303)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEE-ECCCCCC-------------CCCCEEECCHHHHHHHCCEEEEE
T ss_conf 88999897656999999999-77988999-8985322-------------45745526899999759999992
No 259
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.36 E-value=0.36 Score=28.16 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHH
Q ss_conf 7852135504763101024788876432372157650222313589998740355521000011
Q gi|254780279|r 66 AMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMS 129 (280)
Q Consensus 66 ~~~~~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~S 129 (280)
.+.++++|++|- +......+.++.|-+.+ -+....||++.=+++..++ +.++|..+|-.+
T Consensus 40 ~~~~~dadi~i~-~~~~i~~~~l~~ap~LK-~I~~~g~G~d~ID~~aa~~--~gI~V~n~pg~~ 99 (317)
T PRK06487 40 AERLQGAQVAIS-NKVALDAAALAAAPQLK-LILVAATGTNNVDLAAARE--RGITVCNCQGYG 99 (317)
T ss_pred HHHHCCCCEEEE-CCCCCCHHHHHCCCCCE-EEEECCCCCCCCCHHHHHH--CCCEEEECCCCC
T ss_conf 998489919996-89712899993499981-9988883632206999997--899899789868
No 260
>PRK07589 ornithine cyclodeaminase; Validated
Probab=93.35 E-value=0.26 Score=29.07 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=63.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 79998998779999999983899789999964898020455366608754675455685785213550476310102478
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTLQ 86 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~~ 86 (280)
.++|+|+|...+.-+.++..-.+++=+-+++++..+. .............+...++++++...+|||+-.|.-.....
T Consensus 131 ~l~iIGtG~QA~~Q~~A~~~vr~i~~V~v~~r~~~~a--~~~a~~l~~~g~~v~~~~s~~eAv~~ADIIvTaT~s~~~~P 208 (346)
T PRK07589 131 TMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT--AKLARNLAGPGLRIVRCRSVAEAVEGADIITTVTADKANAT 208 (346)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHH--HHHHHHHHHCCCEEEEECCHHHHHHCCCEEEEECCCCCCCC
T ss_conf 6999747088999999999858986899982887999--99999987269808994999999721988887114778886
Q ss_pred HH-HHHHHCCCEE-EEEE
Q ss_conf 88-7643237215-7650
Q gi|254780279|r 87 SL-NISAQHNIVH-IIGT 102 (280)
Q Consensus 87 ~~-~~a~~~g~~v-ViGT 102 (280)
.+ ...++-|.|+ -+|+
T Consensus 209 il~~~~v~pGtHInaVGa 226 (346)
T PRK07589 209 ILTPDMIEPGMHINAVGG 226 (346)
T ss_pred CCCHHHCCCCCEEEEECC
T ss_conf 023877599957985279
No 261
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.22 E-value=0.32 Score=28.49 Aligned_cols=90 Identities=13% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCC---EEE
Q ss_conf 998873799989987799999999838-9978999996489802045536660875467545568578521355---047
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVD---GII 76 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~D---ViI 76 (280)
|++.+ +|.|+|+ |.|+..+..+... ++++|+|++.+-+.. .+.+. ...|++.+...+++-+.+| |+|
T Consensus 1 m~~pk-sVvV~Gt-rFGq~Ylaaf~~~~~~~eLaGiLaqGSeR--SRaLA-----h~~GVply~~~eelpd~idiACVvV 71 (361)
T COG4693 1 MSDPK-SVVVCGT-RFGQFYLAAFAAAPPRFELAGILAQGSER--SRALA-----HRLGVPLYCEVEELPDDIDIACVVV 71 (361)
T ss_pred CCCCC-EEEEECC-HHHHHHHHHHCCCCCCCEEEHHHHCCCHH--HHHHH-----HHHCCCCCCCHHHCCCCCCEEEEEE
T ss_conf 99873-6999530-37799999852588776651043235477--89999-----9869863157745777787579997
Q ss_pred EEEC-CCHHHHHHHHHHHCCCEEE
Q ss_conf 6310-1024788876432372157
Q gi|254780279|r 77 DFSS-PALTLQSLNISAQHNIVHI 99 (280)
Q Consensus 77 DFT~-P~~~~~~~~~a~~~g~~vV 99 (280)
-=+. -....+.++..++.|++++
T Consensus 72 rsai~Gg~Gs~larall~RGi~Vl 95 (361)
T COG4693 72 RSAIVGGQGSALARALLARGIHVL 95 (361)
T ss_pred EEEEECCCCHHHHHHHHHCCCHHH
T ss_conf 304206872799999997132787
No 262
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=93.19 E-value=0.17 Score=30.44 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=54.1
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH----H--CCCCEEEEE
Q ss_conf 37999899-8779999999983899789999964898020455366608754675455685785----2--135504763
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA----I--QSVDGIIDF 78 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~----~--~~~DViIDF 78 (280)
-+|.|.|+ |-.|...++..+ .-+.++++.+.+++....-+++|...-+. .-.+|+.+. . ..+|+++|+
T Consensus 142 ~~vLi~gaaGgVG~~avQlAk-~~Ga~Vi~t~~s~~k~e~~~~lGA~~vi~----~~~~~~~~~i~~~t~g~gvdvv~D~ 216 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAK-ALGAKLIGTVGSAQKAQRALKAGAWQVIN----YREENIVERVKEITGGKKVRVVYDS 216 (327)
T ss_pred CEEEEECCCCCCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHCCCCEEEE----CCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 999998177611268999999-86999999989899999999669999998----9999999999998689983699989
Q ss_pred ECCCHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 10102478887643237215765022
Q gi|254780279|r 79 SSPALTLQSLNISAQHNIVHIIGTTG 104 (280)
Q Consensus 79 T~P~~~~~~~~~a~~~g~~vViGTTG 104 (280)
.-.+.....++.....|+-+++|.+.
T Consensus 217 vG~~~~~~~~~~l~~~G~iv~~G~~~ 242 (327)
T PRK10754 217 VGKDTWEASLDCLQRRGLMVSFGNAS 242 (327)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88899999999863498999980688
No 263
>KOG2018 consensus
Probab=93.19 E-value=0.35 Score=28.27 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=57.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH---------CCCHH------------HHC---CCCCCCCCC-
Q ss_conf 79998998779999999983899789999964898020---------45536------------660---875467545-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI---------GQDVG------------NFV---GISPMGIKF- 61 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~---------g~d~~------------~~~---~~~~~~v~i- 61 (280)
=|.|+|+|-.|.-++..+.. .++.-.-++|-++-... -+|+| .+. .+......+
T Consensus 76 yVVVVG~GgVGSwv~nmL~R-SG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~ 154 (430)
T KOG2018 76 YVVVVGAGGVGSWVANMLLR-SGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWT 154 (430)
T ss_pred EEEEEECCCHHHHHHHHHHH-HCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECHHHHHCC
T ss_conf 79999168522999999998-26863899531014575632235246765388168999999985286012008776318
Q ss_pred CCCHHH-HHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 568578-521355047631-01024788876432372157650222
Q gi|254780279|r 62 SDNLAM-AIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 62 ~~dl~~-~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTTG~ 105 (280)
.++-+. .+.++|-|||+- +-+.-.+.+++|..+|+++++ +||-
T Consensus 155 ~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~Ga 199 (430)
T KOG2018 155 SSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGA 199 (430)
T ss_pred CCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEE-CCCC
T ss_conf 77522342279985767121021255799999876985673-3674
No 264
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=93.18 E-value=0.34 Score=28.29 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=94.3
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEE------
Q ss_conf 7999899-877999999998389978999996489802045536660875467545568578521--3550476------
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIID------ 77 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViID------ 77 (280)
||.|.|+ |-||+.+.+.+.+ ++.++.+. .++. ++ ..-..+...++.--+.+...++ .+|+||-
T Consensus 1 rilitGa~GQlG~~L~~~l~~-~g~~~~~~-~~~~-~~-----~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~ 72 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSK-PGRVVVAL-TRST-RL-----KLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTD 72 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCC-CCCEEEEE-CCCC-CC-----CHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCC
T ss_conf 978873875679999997078-88278643-6877-76-----1133654406224688999998528753762301101
Q ss_pred -----------EE-CCCHHHHHHHHHHHCCCEEEEEEC-----C-C--------CH---------------HHHHHHHHH
Q ss_conf -----------31-010247888764323721576502-----2-2--------31---------------358999874
Q gi|254780279|r 78 -----------FS-SPALTLQSLNISAQHNIVHIIGTT-----G-F--------SV---------------KENEVISSF 116 (280)
Q Consensus 78 -----------FT-~P~~~~~~~~~a~~~g~~vViGTT-----G-~--------~~---------------e~~~~l~~~ 116 (280)
|- +..++..+++.|.++|..+|==+| | | .+ .-+..+.++
T Consensus 73 VD~AE~~~~~AyavNa~A~~~lA~~A~~~Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~nPlnvYG~SK~~GE~a~~~~ 152 (317)
T TIGR01214 73 VDGAESDPEKAYAVNALAPQNLARAAARVGARLVHISTDYVFDGDFGGEGKRPYREDDETNPLNVYGQSKLAGEQAVRAA 152 (317)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 00003777787657407899999999866915999863423447557888668876468798431211156899999983
Q ss_pred HC--C-----CCCEECCCHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 03--5-----55210000115689999999999-9861156660089999864167899867899999999853288
Q gi|254780279|r 117 AR--N-----APIVKSSNMSLGINFLGFLVETA-AEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKV 185 (280)
Q Consensus 117 s~--~-----~~il~apN~SiGv~ll~~l~~~~-a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~ 185 (280)
.. + +.+||+.+-+=|=|++.-+++.+ .+-= -+.|++= =-=+|-= |..||+.|.+..+.
T Consensus 153 ~~~e~~lIvRTsWlY~~~g~~g~NF~~tMlrLaG~~~~------~l~vV~D----Q~GsPTy-~~dLA~~~~~ll~~ 218 (317)
T TIGR01214 153 GPDENALIVRTSWLYGAGGGSGRNFVKTMLRLAGKERE------ELRVVDD----QIGSPTY-AKDLARAIAALLER 218 (317)
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCC------CEEEEEC----CCCCHHH-HHHHHHHHHHHHHH
T ss_conf 79985788985213448998842179999985378998------4037855----7687358-99999999999976
No 265
>PRK06046 alanine dehydrogenase; Validated
Probab=93.16 E-value=0.3 Score=28.73 Aligned_cols=98 Identities=10% Similarity=0.154 Sum_probs=61.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC-CCH
Q ss_conf 7379998998779999999983899789999964898020455366608754675455685785213550476310-102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS-PAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~-P~~ 83 (280)
+-+++|+|+|.+++..++.+..-.+++-+.+++|...+.. +=..++.......+...++.+++. .+|||+-.|+ ++.
T Consensus 129 ~~~l~iiG~G~Qa~~~~~al~~v~~i~~i~v~~r~~~~~~-~fa~~~~~~~~~~v~~~~~~~~~~-~aDiI~taT~s~~P 206 (326)
T PRK06046 129 SKVIGIIGAGNQARTQLEALSRVFDLEEVRVYDRTKESCE-KFISEMSDFVPCEIVYEEDVEEAC-DCDILVTTTPSRKP 206 (326)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHHCCCCEEECCCHHHHH-CCCEEEEEECCCCC
T ss_conf 8558996570889999999997389778999918999999-999999865598659739999982-79999998289984
Q ss_pred HHHHHHHHHHCCCEEE-EEECCCC
Q ss_conf 4788876432372157-6502223
Q gi|254780279|r 84 TLQSLNISAQHNIVHI-IGTTGFS 106 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vV-iGTTG~~ 106 (280)
+++ ...++-|.++. +|+.-..
T Consensus 207 ~~~--~~~l~pG~hi~~iG~~~p~ 228 (326)
T PRK06046 207 VVK--ADWVKEGTHINAIGADAPG 228 (326)
T ss_pred EEC--CCCCCCCCEEEECCCCCCC
T ss_conf 514--4335787177412689866
No 266
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.08 E-value=0.18 Score=30.25 Aligned_cols=93 Identities=9% Similarity=0.037 Sum_probs=61.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC-CCH
Q ss_conf 7379998998779999999983899789999964898020455366608754675455685785213550476310-102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS-PAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~-P~~ 83 (280)
.-+++|+|+|..++..++.+..-..++-+.+++|...+... ..+..... ......++.+++...+|||+-.|+ ++.
T Consensus 125 ~~~l~iiGaG~QA~~~~~a~~~v~~~~~V~v~~r~~~~a~~--~~~~~~~~-~~~~~~~~~e~av~~aDiI~taT~S~~P 201 (304)
T PRK07340 125 PRDLLLIGTGVQAAHHLEALAALLPVRRVWVRGRTAASAAA--FCAAARAL-GPTLEPLDGDAIPPAVDVVVTVTTSRTP 201 (304)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--HHHHHHCC-CCCEEECCHHHHHHHCCEEEEECCCCCC
T ss_conf 75179973479999999999985997489998799899999--99998600-9917976899998428989994189976
Q ss_pred HHHHHHHHHHCCCEEE-EEEC
Q ss_conf 4788876432372157-6502
Q gi|254780279|r 84 TLQSLNISAQHNIVHI-IGTT 103 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vV-iGTT 103 (280)
+ +....+.|.++. +|+.
T Consensus 202 v---~~~~~~~g~hI~aiGs~ 219 (304)
T PRK07340 202 V---YPEAARAGRLVVGVGAF 219 (304)
T ss_pred C---CCCCCCCCEEEECCCCC
T ss_conf 4---46557998189413789
No 267
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.07 E-value=0.49 Score=27.22 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=62.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC--CCHHHHHCCCCEEEEEECCC
Q ss_conf 7379998998779999999983899789999964898020455366608754675455--68578521355047631010
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS--DNLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~--~dl~~~~~~~DViIDFT~P~ 82 (280)
.+||+|+|-|+-|+++++.+.+. +..+...-+++.. .+...-. ....++.+. ....+....+|+|| .+|.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~--~~~~~~~---~~~~~i~~~~g~~~~~~~~~~d~vV--~SPG 78 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAP--EGLAAQP---LLLEGIEVELGSHDDEDLAEFDLVV--KSPG 78 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHC-CCEEEEECCCCCC--CCHHHHH---HHCCCCEEECCCCCHHCCCCCCEEE--ECCC
T ss_conf 99799992665109999999977-9869998389876--5323444---4203722313764110013477899--8999
Q ss_pred HH--HHHHHHHHHCCCEE---------------EEEECCCCHH--HHHHHHHHHCC--CCCEECCCHHHHH
Q ss_conf 24--78887643237215---------------7650222313--58999874035--5521000011568
Q gi|254780279|r 83 LT--LQSLNISAQHNIVH---------------IIGTTGFSVK--ENEVISSFARN--APIVKSSNMSLGI 132 (280)
Q Consensus 83 ~~--~~~~~~a~~~g~~v---------------ViGTTG~~~e--~~~~l~~~s~~--~~il~apN~SiGv 132 (280)
.. .+.++.|.+.|+++ ++|.||=+-+ .-..+..+.+. .+...+.|....+
T Consensus 79 i~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~ 149 (448)
T COG0771 79 IPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA 149 (448)
T ss_pred CCCCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCCCCCCH
T ss_conf 99988899999986993774888898744899989997999628899999999985599832135167137
No 268
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.03 E-value=0.81 Score=25.75 Aligned_cols=119 Identities=15% Similarity=0.225 Sum_probs=64.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC--HHHCCCHHHHCCCCC--------CCCCCCCCHHHHHCCCC
Q ss_conf 87379998998779999999983899789999964898--020455366608754--------67545568578521355
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS--PLIGQDVGNFVGISP--------MGIKFSDNLAMAIQSVD 73 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~--~~~g~d~~~~~~~~~--------~~v~i~~dl~~~~~~~D 73 (280)
...||+|-|+|+.|+..++.+... +..++++-|++.. ...|-|+..+...+. .+..+....+..-.+||
T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~~-GAkvv~~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cD 284 (411)
T COG0334 206 EGARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCD 284 (411)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf 887899977628999999999974-9979999767884416777788999877664445876348667265130045775
Q ss_pred EEEEEECCCHH-HHHHHHHHHCCCEEEEE-ECCCCH-HHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 04763101024-78887643237215765-022231-35899987403555210000115
Q gi|254780279|r 74 GIIDFSSPALT-LQSLNISAQHNIVHIIG-TTGFSV-KENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 74 ViIDFT~P~~~-~~~~~~a~~~g~~vViG-TTG~~~-e~~~~l~~~s~~~~il~apN~Si 130 (280)
|++=+...... .++++. .+..+|.+ .-|=+. +-.+.+. +.+|+++|-+-.
T Consensus 285 Il~PcA~~n~I~~~na~~---l~ak~V~EgAN~P~t~eA~~i~~----erGIl~~PD~la 337 (411)
T COG0334 285 ILIPCALENVITEDNADQ---LKAKIVVEGANGPTTPEADEILL----ERGILVVPDILA 337 (411)
T ss_pred EECCCCCCCCCCHHHHHH---HHCCEEEECCCCCCCHHHHHHHH----HCCCEECCHHHC
T ss_conf 771044436256321887---50027985267999877899999----789888271322
No 269
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=92.90 E-value=0.7 Score=26.18 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=53.4
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE---CCC
Q ss_conf 7999899-877999999998389978999996489802045536660875467545568578521355047631---010
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS---SPA 82 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT---~P~ 82 (280)
.|.++|. -+|-..+-+.+. ..+.++..-....+ .-...++..+..+|+||=|| +..
T Consensus 1 svLiIGG~~~~~~~~~~~~~-~~G~~~~~h~~g~~-------------------~~~~~l~~~i~~aDlVI~~td~vsH~ 60 (96)
T pfam10087 1 SVLIVGGRDDRLGHYRKLLE-KYGGEFIVHDGGRE-------------------KKKKKIPALLKKADLVIVFTDCVSHD 60 (96)
T ss_pred CEEEECCCHHHHHHHHHHHH-HCCCEEEEECCCCC-------------------CHHHHHHHCCCCCCEEEEECCCCCHH
T ss_conf 99999585567899999999-83998999658987-------------------33556775058988899971766879
Q ss_pred HHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHH
Q ss_conf 24788876432372157650-22231358999874
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGT-TGFSVKENEVISSF 116 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~ 116 (280)
+....-+.|.+.++|+|..- .|++. -.+.|+++
T Consensus 61 ~~~~vK~~akk~~~p~v~~~s~s~~~-l~~~l~~~ 94 (96)
T pfam10087 61 AMWRVKEEAKKRGIPVVFSRSRSLSA-LERALARL 94 (96)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCHHH-HHHHHHHH
T ss_conf 99999999998499789976874999-99999996
No 270
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=92.80 E-value=0.36 Score=28.18 Aligned_cols=39 Identities=28% Similarity=0.573 Sum_probs=31.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHH----CCCCEEEEEEECCCCH
Q ss_conf 87379998998779999999983----8997899999648980
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHN----NPSITLHSIIVRSGSP 42 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~----~~~~eLv~~i~~~~~~ 42 (280)
.|--|.+.|+||.||.+++.+.+ -..+.|-+++.|+...
T Consensus 128 ~p~DVVLYGFGRIGRLlAR~Lie~~g~g~~lrLrAIVvR~~~~ 170 (479)
T PRK08289 128 APRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGKE 170 (479)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCH
T ss_conf 9875799767379999999999862898746899999835965
No 271
>TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091 This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond. Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . .
Probab=92.73 E-value=0.89 Score=25.47 Aligned_cols=112 Identities=9% Similarity=0.144 Sum_probs=66.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-----------CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 737999899877999999998389-----------978999996489802045536660875467545568578521355
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-----------SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVD 73 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-----------~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~D 73 (280)
+=||.|+|+ |.|+..+.++...+ +++|+|++.+-+.+ .+.+.. ..||+++...+++-+.+|
T Consensus 3 ~~~vlv~G~-~FG~~Yl~A~~~~~~lWaarPahl~r~~L~GlLAqGS~R--SR~LA~-----~lGvpLy~~ve~lp~~~~ 74 (378)
T TIGR01761 3 KQSVLVCGT-RFGEVYLAAFAAAPRLWAARPAHLERFELAGLLAQGSER--SRALAH-----RLGVPLYSEVEELPDDID 74 (378)
T ss_pred CCEEEEEEC-CHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEEHHCCHH--HHHHHH-----HHCCCCCCCHHHCCCCCC
T ss_conf 857999616-667899997267855741363436773244110010368--999999-----809841067100468875
Q ss_pred ---EEEEEEC-CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEC
Q ss_conf ---0476310-102478887643237215765022231358999874035552100
Q gi|254780279|r 74 ---GIIDFSS-PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKS 125 (280)
Q Consensus 74 ---ViIDFT~-P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~a 125 (280)
|||==|. =....+.++..++.|++|+.= ==+-.+++..+..+|++-+.-|-
T Consensus 75 ~ACvvvRSa~~Gg~G~~LA~aLL~RGi~VLqE-HPl~p~d~~~L~~lA~~~Gr~Y~ 129 (378)
T TIGR01761 75 IACVVVRSAIVGGKGSELARALLKRGIHVLQE-HPLHPEDIAELLRLAERQGRRYL 129 (378)
T ss_pred EEEEEEEEEEECCCCHHHHHHHHHCCCEEEEC-CCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 55888522531797258999998567515632-89887789999999997098664
No 272
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=92.72 E-value=0.12 Score=31.33 Aligned_cols=142 Identities=18% Similarity=0.312 Sum_probs=82.8
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC------HHHCCCH-HHHCCCCCCCCCCCCCHHH---H----
Q ss_conf 887379998998779999999983899789999964898------0204553-6660875467545568578---5----
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS------PLIGQDV-GNFVGISPMGIKFSDNLAM---A---- 68 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~------~~~g~d~-~~~~~~~~~~v~i~~dl~~---~---- 68 (280)
..|=||.|+|.|= | .++++|.+++.+|=+..++-+.. +++-... |.+ ..++..+.|.|-... .
T Consensus 74 ~NPk~VLvIGGGD-G-G~lREV~KH~sVE~~~lVdID~~VI~~srkyLP~~~~g~~-dderv~~~i~DG~~fl~~~Gasd 150 (284)
T TIGR00417 74 PNPKKVLVIGGGD-G-GVLREVVKHKSVEKATLVDIDEKVIELSRKYLPKLAAGSF-DDERVDLAIDDGFKFLRDTGASD 150 (284)
T ss_pred CCCCEEEEEECCC-C-CEEEEEEECCCCCEEEEEECCHHHHHHHHHHCHHHHCCCC-CCCEEEEEECCCHHHHHHCCCCC
T ss_conf 9885478996388-8-4687887559816799997274789998882612105665-88803589825179897615222
Q ss_pred -HCCCCEEE-EEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC--EE-CCCHHHHHHHHHHHHHHHH
Q ss_conf -21355047-6310102478887643237215765022231358999874035552--10-0001156899999999999
Q gi|254780279|r 69 -IQSVDGII-DFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI--VK-SSNMSLGINFLGFLVETAA 143 (280)
Q Consensus 69 -~~~~DViI-DFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i--l~-apN~SiGv~ll~~l~~~~a 143 (280)
-+.+|||| |.|-|..--+.+ |+.+-.+.++++.+.-+| .. +-|+=+---++..+-+.+.
T Consensus 151 v~~~fDVIIvDstDPvGPa~~L----------------F~~~Fy~~~~~aL~~~Gv~v~Qss~s~~~~~~~~~d~~r~~~ 214 (284)
T TIGR00417 151 VEKKFDVIIVDSTDPVGPAETL----------------FTKEFYELLKKALNEDGVIVAQSSESPWLQLELIKDLKRKVK 214 (284)
T ss_pred CCCCCCEEEEECCCCCCCCCCH----------------HHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 2121447997277895655410----------------217999999985299988998027884327488887888775
Q ss_pred HH-HCCCCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf 86-11566600899998641678998678
Q gi|254780279|r 144 EY-LLPAKDWDFEILEMHHRRKLDSPSGT 171 (280)
Q Consensus 144 ~~-l~~~~~~dieI~E~HH~~K~DaPSGT 171 (280)
.+ |+..+.|-.. =.=-|||+
T Consensus 215 ~~~F~~~~~y~~~--------iPTYp~G~ 235 (284)
T TIGR00417 215 EVPFPITEYYTAA--------IPTYPSGL 235 (284)
T ss_pred HCCCCCCEEEEEE--------CCCCHHHH
T ss_conf 2689753046640--------78650235
No 273
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.68 E-value=0.34 Score=28.29 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=37.7
Q ss_pred CHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 8578521355047631010247888764323721576502223135899987403555210000115
Q gi|254780279|r 64 NLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 64 dl~~~~~~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
++.+.+.++|++|-... ....+.++.|-+. |-+...+||++.=+++..++ +.++|..+|..+-
T Consensus 35 e~~~~i~dadili~~~~-~i~~e~l~~a~~L-K~I~~~g~G~D~ID~~aa~~--~gI~V~n~p~~~~ 97 (311)
T PRK08410 35 EVIERIKDANIIITNKV-VIDKEVLSALPNL-KLICITATGTNNVDLEYAKK--RGIAVKNVAGYST 97 (311)
T ss_pred HHHHHHCCCCEEEECCC-CCCHHHHHCCCCC-EEEEECCCCCCHHHHHHHHH--CCCEEEECCCCCC
T ss_conf 99998389949997488-5499999369998-49998881561421999997--9968992799784
No 274
>pfam06408 consensus
Probab=92.60 E-value=0.26 Score=29.16 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=76.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEE--EEEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHHHC----CC---CEEE
Q ss_conf 79998998779999999983899789--999964898020455366608754675455-68578521----35---5047
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITL--HSIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMAIQ----SV---DGII 76 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eL--v~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~~~----~~---DViI 76 (280)
||.++|+|-.||.++-++.++=++.- +-++|..+... ........|+.-....++ +++.+.+. .- |.+|
T Consensus 3 ~Iv~iGfGSIgq~~LPLl~rH~~~~~~~Itiid~~d~~~-~~~~~~~~Gi~fi~~~lT~eNy~~~L~~~L~~gg~gdflv 81 (471)
T pfam06408 3 PILMIGFGSIGRGTLPLIERHFKFDRSNIVVIDPRDTKK-DRKLLAEKGIRFVQTAVTKDNYKNVLDPLLKGGGGQGFCV 81 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCHHHEEEECCCCCHH-HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 779987571674206788876078878989976787545-6677875697688614587889999999862677788799
Q ss_pred EEECCCHHHHHHHHHHHCCCEEEEEEC-----CCCHH--------H----HHHHHHHHC---C-CCCE--ECCCHHHHHH
Q ss_conf 631010247888764323721576502-----22313--------5----899987403---5-5521--0000115689
Q gi|254780279|r 77 DFSSPALTLQSLNISAQHNIVHIIGTT-----GFSVK--------E----NEVISSFAR---N-APIV--KSSNMSLGIN 133 (280)
Q Consensus 77 DFT~P~~~~~~~~~a~~~g~~vViGTT-----G~~~e--------~----~~~l~~~s~---~-~~il--~apN~SiGv~ 133 (280)
|.|.--.+.+++++|.++|+.-+= |. |+..+ . .+.+.++.+ . .+.+ ...|--+=-.
T Consensus 82 nLSvniss~~ii~~C~e~GvlYld-T~iEpW~g~y~d~~~~p~~RTnYalre~~r~~~~~~~~GpTAv~~hGANPGlVSh 160 (471)
T pfam06408 82 NLSVDTSSLDLMRLCREHGVLYVD-TVVEPWLGFYFDADADNEARTNYALRETVRELKRDWPGGPTAVSTCGANPGMVSW 160 (471)
T ss_pred EEECCCCHHHHHHHHHHHCCEEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
T ss_conf 801157889999999980987755-4403568866677798556666999999999996579998077746899518999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999861
Q gi|254780279|r 134 FLGFLVETAAEYL 146 (280)
Q Consensus 134 ll~~l~~~~a~~l 146 (280)
+.++.+..+|+.+
T Consensus 161 fvKqaLldiA~~~ 173 (471)
T pfam06408 161 FVKQALVDLAADL 173 (471)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999986
No 275
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.56 E-value=0.53 Score=26.99 Aligned_cols=100 Identities=22% Similarity=0.158 Sum_probs=52.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC-------------CHHHCCCHHHHCC-----------CCCCCCCCC
Q ss_conf 7999899877999999998389978999996489-------------8020455366608-----------754675455
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG-------------SPLIGQDVGNFVG-----------ISPMGIKFS 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~-------------~~~~g~d~~~~~~-----------~~~~~v~i~ 62 (280)
||.|+|+|-.|.++++.+.... +.=..++|.+. ...+|+.-.+... +......+.
T Consensus 1 kvlvvG~GglG~e~~k~la~~G-vg~i~ivD~d~i~~sNL~rQflf~~~dvG~~Ka~~a~~~i~~~np~v~v~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 9899928888999999999848-985999739934413565674676553687899999999998789978998505310
Q ss_pred CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHH--------CCCEEEE-EECCCCH
Q ss_conf 68578521355047631-01024788876432--------3721576-5022231
Q gi|254780279|r 63 DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQ--------HNIVHII-GTTGFSV 107 (280)
Q Consensus 63 ~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~--------~g~~vVi-GTTG~~~ 107 (280)
+--.+.++++|+||+.. +-++-...-+.|.. +.+|+|- ||.||.-
T Consensus 80 ~~~~~f~~~fdvVi~~lDn~~aR~~vN~~~v~~~~~~~~~~~~PlidgGt~G~~G 134 (291)
T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKG 134 (291)
T ss_pred HCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCE
T ss_conf 0789899519999988789999999999998743135544577468602566530
No 276
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.52 E-value=0.59 Score=26.68 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=43.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC--CHHHHH-CCCCEEEEEECCC
Q ss_conf 3799989987799999999838997899999648980204553666087546754556--857852-1355047631010
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD--NLAMAI-QSVDGIIDFSSPA 82 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~--dl~~~~-~~~DViIDFT~P~ 82 (280)
=||.|+|.|+-|.++++.+. ..+.++.+ .|.++.. . + .........++.+.. +....+ +.+|+|| .+|.
T Consensus 10 k~i~viGlG~sG~s~a~~L~-~~G~~V~~-~D~~~~~--~-~-~~~~~l~~~gi~~~~g~~~~~~~~~~~d~vV--~SPg 81 (450)
T PRK02472 10 KKVLVLGLAKSGYAAAKLLH-KLGANVTV-NDGKPFS--E-N-PAAQELLEEGIKVICGSHPLELLDENFDLMV--KNPG 81 (450)
T ss_pred CEEEEEEECHHHHHHHHHHH-HCCCEEEE-EECCCCC--C-C-HHHHHHHHCCCEEEECCCHHHHCCCCCCEEE--ECCC
T ss_conf 98999977899999999999-88698999-8488665--7-9-8999999679989978880786057887999--8998
Q ss_pred HH--HHHHHHHHHCCCEE
Q ss_conf 24--78887643237215
Q gi|254780279|r 83 LT--LQSLNISAQHNIVH 98 (280)
Q Consensus 83 ~~--~~~~~~a~~~g~~v 98 (280)
.- .+.++.|.++|+|+
T Consensus 82 I~~~~p~~~~a~~~~i~v 99 (450)
T PRK02472 82 IPYDNPMVEEALEKGIPI 99 (450)
T ss_pred CCCCCHHHHHHHHCCCCE
T ss_conf 799999999999869967
No 277
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.35 E-value=0.97 Score=25.20 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=44.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763101
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280)
=+|.|+|+|-.+++++-.+.+ .+..-+.++.|+..+ .+.+-+..+.. ......+++......+|+||..|+.
T Consensus 123 k~vlIlGaGGaarai~~al~~-~g~~~i~i~nR~~~~--a~~l~~~~~~~-~~~~~~~~~~~~~~~~diiInaTp~ 194 (275)
T PRK00258 123 KRILLLGAGGAARAVILPLLE-LGVAEITIVNRTVER--AEELAELFGEG-VQALGLDELAGELADFDLIINTTSA 194 (275)
T ss_pred CEEEEECCCCHHHHHHHHHHH-CCCCEEEEEECCHHH--HHHHHHHHCCC-CCEEEHHHHHHCCCCCCEEEECCCC
T ss_conf 759998887107999999997-699989999589999--99999983567-6275378754304457779965777
No 278
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=92.34 E-value=0.15 Score=30.83 Aligned_cols=117 Identities=16% Similarity=0.321 Sum_probs=71.1
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHH-HHCC--CCEEEEEEC-C
Q ss_conf 7999899-877999999998389978999996489802045536660875467545568578-5213--550476310-1
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAM-AIQS--VDGIIDFSS-P 81 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~-~~~~--~DViIDFT~-P 81 (280)
+|||+|| |..||..++.+ ++.+|.+-...--.+.+-.|+.+-- ....+.|.+--.+ .+.. .|+.. ||- -
T Consensus 1 ~vAiVGATG~VGq~~lk~L-eeR~FP~~~~~~~AS~RS~G~~~~F----~gke~~v~~~~~~n~F~gekidIAl-FSAGg 74 (350)
T TIGR01296 1 NVAIVGATGAVGQEMLKIL-EERNFPIDKLVLLASERSAGRKVTF----KGKELEVEEAKKENSFEGEKIDIAL-FSAGG 74 (350)
T ss_pred CEEEEECCCHHHHHHHHHH-HCCCCCHHHHHHHCCCCCCCCEEEE----CCCEEEEECCCCCCCCCCCEEEEEE-ECCCH
T ss_conf 9478962674799998764-1367877556441056788857851----2753660101001488877033456-51531
Q ss_pred CHHHHHHHHHHHCCCEEEEEECCCC-HHH---------HHHHHHHHCCCCCEECCCHHH
Q ss_conf 0247888764323721576502223-135---------899987403555210000115
Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTGFS-VKE---------NEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG~~-~e~---------~~~l~~~s~~~~il~apN~Si 130 (280)
+.+.+.+..+.+.|.-||==|+-|= +++ .+.+++. +...|+-=||=|-
T Consensus 75 svSke~aP~a~k~g~~VIDntS~fR~D~dVPLVVPEVN~~~~~~~-~~kgIIANPNCst 132 (350)
T TIGR01296 75 SVSKEFAPKAAKAGVIVIDNTSAFRMDPDVPLVVPEVNLEDLKEF-NKKGIIANPNCST 132 (350)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCHHHHHCC-CCCCCEECCCCCH
T ss_conf 334888788860875798176200057898634437784776347-8888145886007
No 279
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=92.29 E-value=1 Score=25.10 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=66.4
Q ss_pred EEEEECC----CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC
Q ss_conf 7999899----877999999998389978999996489802045536660875467545568578521355047631010
Q gi|254780279|r 7 RISVLGG----GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 7 kV~I~Ga----GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~ 82 (280)
+|+++|+ .|-.-.+.+.+. +.++++.-+ +.+..| .++ +|.+++.++.++-.++|+|.-|-.|+
T Consensus 18 ~IAvVG~S~~P~r~sy~V~kyL~-~~GY~ViPV----NP~~~~---~ei-----LG~k~y~sL~dIpe~IDiVdvFR~~e 84 (140)
T COG1832 18 TIAVVGASDKPDRPSYRVAKYLQ-QKGYRVIPV----NPKLAG---EEI-----LGEKVYPSLADIPEPIDIVDVFRRSE 84 (140)
T ss_pred EEEEEECCCCCCCCHHHHHHHHH-HCCCEEEEE----CCCCCH---HHH-----CCCHHHHCHHHCCCCCCEEEEECCHH
T ss_conf 69999457999861889999999-789989955----855205---776-----28311205875887775799852865
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 2478887643237215765022231358
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKEN 110 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280)
.+.++++.+++.+..++..--|...++-
T Consensus 85 ~~~~i~~eal~~~~kv~W~QlGi~n~ea 112 (140)
T COG1832 85 AAPEVAREALEKGAKVVWLQLGIRNEEA 112 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 6388999999617885997458579899
No 280
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.27 E-value=1 Score=25.09 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=38.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
..|||+|+||.|+.+++... .=++++.+ +++...+ +. ......++++++++.+|+|.
T Consensus 147 ktvGIiG~G~IG~~va~~~~-~fg~~Vi~-yD~~~~~----~~--------~~~~~~~sleell~~sDiIs 203 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYA-GFGATITA-YDAYPNK----DL--------DFLTYKDSVKEAIKDADIIS 203 (330)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEE-ECCCCCC----CC--------CCCEECCCHHHHHHHCCEEE
T ss_conf 68999675889999999987-56998999-8998642----21--------21323278999987599999
No 281
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=92.26 E-value=1 Score=25.08 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=50.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH---H-CCCCEEEEEECCC
Q ss_conf 79998998779999999983899789999964898020455366608754675455685785---2-1355047631010
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA---I-QSVDGIIDFSSPA 82 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~---~-~~~DViIDFT~P~ 82 (280)
|+.|+|+|-+||+++..+. +.++++.+.+|.+.... +....+.++..+.+.. . +...+++-...|.
T Consensus 1 KiiIiGaGg~ar~v~~~~~-~~~~~v~gfiDd~~~~~---------~~~~~~~~vlg~~~~~~~~~~~~~~~~iaIG~~~ 70 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAE-SSGWEIVGFLDDNPALQ---------GTSVDGLPVLGGDEDLLKLPPDEVDLVVAIGDNK 70 (201)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCEEEEEEECCCCCC---------CCCCCCEEEECCHHHHHHCCCCCCEEEEEECCHH
T ss_conf 9999967889999999999-68993999998983006---------7515882486707888754856668999919989
Q ss_pred HHHHHHHHHHHCCCEEE
Q ss_conf 24788876432372157
Q gi|254780279|r 83 LTLQSLNISAQHNIVHI 99 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vV 99 (280)
.-.+..+++.+.+.++.
T Consensus 71 ~R~ki~~~l~~~~~~f~ 87 (201)
T TIGR03570 71 LRRRLVEKLKAKGYRFA 87 (201)
T ss_pred HHHHHHHHHHHCCCEEE
T ss_conf 99999999986899678
No 282
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=92.00 E-value=1.1 Score=24.88 Aligned_cols=44 Identities=23% Similarity=0.542 Sum_probs=34.3
Q ss_pred EEEECC-CHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHH
Q ss_conf 999899-877999999998389-97899999648980204553666
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNF 51 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~ 51 (280)
|+|.|+ |=.|+..++.+.+++ ++++++....++.+..-+-+.+|
T Consensus 1 I~IlGsTGSIG~~tL~Vi~~~~~~f~v~~Lsa~~N~~~L~~q~~~f 46 (129)
T pfam02670 1 ITILGSTGSIGTQTLDVIRRNPDRFEVVALSAGRNVELLAEQIKEF 46 (129)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHC
T ss_conf 9897678688999999999595671899998347899999999973
No 283
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=92.00 E-value=0.75 Score=25.99 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=23.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 999899-877999999998389978999996489
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSG 40 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~ 40 (280)
|.|.|+ |-.|+.+++.+.+ .+.++.+. +|..
T Consensus 1 ILItGasGfiG~~l~~~L~~-~g~~v~~~-~r~~ 32 (235)
T pfam01370 1 ILVTGGTGFIGSALVRRLLQ-EGYEVIVL-GRRR 32 (235)
T ss_pred EEEECCCCHHHHHHHHHHHH-CCCEEEEE-ECCC
T ss_conf 79972897999999999997-87989999-8997
No 284
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=91.92 E-value=1.1 Score=24.82 Aligned_cols=117 Identities=12% Similarity=0.196 Sum_probs=66.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH--HHCCCHHHHCCCCC---------CCCCCCCCHHHHHCCCC
Q ss_conf 73799989987799999999838997899999648980--20455366608754---------67545568578521355
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP--LIGQDVGNFVGISP---------MGIKFSDNLAMAIQSVD 73 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~--~~g~d~~~~~~~~~---------~~v~i~~dl~~~~~~~D 73 (280)
..||+|-|+|++|+.+++.+.+ .+..++++.|.+..- ..|-|+.++..... ..-.+.++ +..-.+||
T Consensus 31 g~~v~IqG~GnVG~~~a~~L~~-~Gakvv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D 108 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHE-AGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNE-ELLELDCD 108 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC-CHHCCCCC
T ss_conf 9999998988999999999998-799599998478738888889999999999965980267887538962-31047887
Q ss_pred EEEEEECCCHH-HHHHHHHHHCCCEEEEEE-CC-CCHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 04763101024-788876432372157650-22-23135899987403555210000115
Q gi|254780279|r 74 GIIDFSSPALT-LQSLNISAQHNIVHIIGT-TG-FSVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 74 ViIDFT~P~~~-~~~~~~a~~~g~~vViGT-TG-~~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
|+|=+..+... .++++ +.+..+|++- -| .+++-.+.|+ +..|++.|-+..
T Consensus 109 I~iP~A~~~~I~~~~a~---~l~ak~I~EgAN~p~t~~A~~~L~----~rgI~viPD~la 161 (227)
T cd01076 109 ILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEILH----ERGVLVVPDILA 161 (227)
T ss_pred EEEECCCCCCCCHHHHH---HCCCEEEEECCCCCCCHHHHHHHH----HCCCEEECCHHH
T ss_conf 89877766977999985---447619984578998988999999----886989680774
No 285
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=91.87 E-value=1.1 Score=24.78 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=41.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 73799989987799999999838-99789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
.|||.|.|+|+ |..+++.+... -+..+++ +|.+... . +.... +.+-++=.-+.|+.
T Consensus 1 m~nILvt~~G~-~~~ii~~lk~~~~~~~Vi~-~D~~~~a-~-------------~~~~a-------D~~y~~P~~~d~~y 57 (325)
T PRK12767 1 MMNILVTSAGR-RVQLVKALKKSLLGGKVIG-ADISPLA-P-------------ALYFA-------DKFYVVPKVTDPNY 57 (325)
T ss_pred CCEEEEECCCC-HHHHHHHHHHCCCCCEEEE-ECCCCCC-C-------------CHHHC-------CEEEECCCCCCHHH
T ss_conf 94899986786-8999999997699859999-6899899-5-------------34454-------88998788898789
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q ss_conf 478887643237215765022
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTG 104 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG 104 (280)
....++.|.++++.+|+-++.
T Consensus 58 ~~~ll~i~~~~~id~iiP~~d 78 (325)
T PRK12767 58 IDALLDICKKENIDALIPLID 78 (325)
T ss_pred HHHHHHHHHHHCCCEEEECCC
T ss_conf 999999999879999997785
No 286
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=91.83 E-value=0.63 Score=26.49 Aligned_cols=90 Identities=8% Similarity=0.038 Sum_probs=59.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHH-CCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 799989987799999999838997899999648980204553666-0875467545568578521355047631010247
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNF-VGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~-~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
.++|+|+|.+++..++....--+++=+-+++|++.... ..... .+.....+...++.++++..+|+|+-.|+- ...
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e--~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s-~~P 208 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAE--AFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPS-TEP 208 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHH--HHHHHHHHHCCCCCEECCCHHHHHHCCCEEEEECCC-CCC
T ss_conf 79998884899999999996289618999768989999--999998763386513236899886139989994289-987
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 88876432372157
Q gi|254780279|r 86 QSLNISAQHNIVHI 99 (280)
Q Consensus 86 ~~~~~a~~~g~~vV 99 (280)
-....-++.|.++.
T Consensus 209 il~~~~l~~G~hI~ 222 (330)
T COG2423 209 VLKAEWLKPGTHIN 222 (330)
T ss_pred EECHHHCCCCCEEE
T ss_conf 62386658970897
No 287
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.59 E-value=0.11 Score=31.56 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCC-CCC-CCCCCC-CCH-HHHHCCCCEEEEEECC
Q ss_conf 379998998779999999983899789999964898020455366608-754-675455-685-7852135504763101
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVG-ISP-MGIKFS-DNL-AMAIQSVDGIIDFSSP 81 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~-~~~-~~v~i~-~dl-~~~~~~~DViIDFT~P 81 (280)
=||.|+|+|++|..+++.+. +++++ -.++++..++ ..+.+... ..- .|-... +-+ ++-+.++|++|-.|.-
T Consensus 233 ~~v~I~Ggg~ig~~la~~L~--~~~~v-~iIe~d~~~~--~~la~~l~~~~Vi~GD~td~~~L~e~gi~~aD~~ia~T~~ 307 (455)
T PRK09496 233 KRIMIAGGGNIGLYLAKLLE--KGYSV-KLIERDPERA--EELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (455)
T ss_pred CEEEEECCCHHHHHHHHHHH--CCCEE-EEECCCHHHH--HHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 51899878699999999874--08838-9970898999--9999747853999788768899976364556489990388
Q ss_pred CHH-HHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHHHCCCCCEECCCHHHHHHHHHH
Q ss_conf 024-78887643237215765022231-358999874035552100001156899999
Q gi|254780279|r 82 ALT-LQSLNISAQHNIVHIIGTTGFSV-KENEVISSFARNAPIVKSSNMSLGINFLGF 137 (280)
Q Consensus 82 ~~~-~~~~~~a~~~g~~vViGTTG~~~-e~~~~l~~~s~~~~il~apN~SiGv~ll~~ 137 (280)
+-. .-..-.|.+.|.+-++.- .+. +..+.++++ .+-..++|..+..-.++..
T Consensus 308 De~Ni~~~llAk~~g~~~~ia~--v~~~~y~~l~~~l--gid~~isp~~~~a~~I~~~ 361 (455)
T PRK09496 308 DEANILSSLLAKRLGAKKVIAL--INRSAYVDLVQGL--GIDIAISPRQATISAILRH 361 (455)
T ss_pred HHHHHHHHHHHHHCCCCCEEEE--ECCHHHHHHHHHC--CCCEEECHHHHHHHHHHHH
T ss_conf 1889999999987399736888--4466788765324--8865788899999999998
No 288
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=91.58 E-value=0.083 Score=32.51 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=79.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 79998998779999999983899789999964898020455366608754675455685785213550476310102478
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTLQ 86 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~~ 86 (280)
.|+|+|+|.--+.=++++..-.+++=+.++.|+..+. .+-...+....-..+....|..+++..+|+||- |+|+...=
T Consensus 131 ~~a~~GAG~QArLQL~AL~LvRdI~~ariWAR~~akA-e~~A~~L~~~~G~~v~a~td~~~A~~~ADI~vT-tTP~~~Pv 208 (326)
T TIGR02992 131 VVAILGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQLSSELGIDVTAATDVRAALSGADIIVT-TTPSETPV 208 (326)
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHH-HHHHHHHHHHCCEEEEECCCHHHHCCCCCEEEE-CCCCCCCC
T ss_conf 7767525567899999986315214432102556789-999999887469068750476862366887987-48798730
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 887643237215765022231358999874
Q gi|254780279|r 87 SLNISAQHNIVHIIGTTGFSVKENEVISSF 116 (280)
Q Consensus 87 ~~~~a~~~g~~vViGTTG~~~e~~~~l~~~ 116 (280)
.-..-++-|.+++ -=|=+.|+.++++-.
T Consensus 209 l~a~wL~pGqh~t--AMGsD~EHKnE~~P~ 236 (326)
T TIGR02992 209 LKAEWLEPGQHVT--AMGSDAEHKNEIDPA 236 (326)
T ss_pred HHHHHCCCCCEEE--EECCCCCCCCCCCHH
T ss_conf 2073367887898--606770122343647
No 289
>pfam02571 CbiJ Precorrin-6x reductase CbiJ/CobK. This family consists of Precorrin-6x reductase EC:1.3.1.54. This enzyme catalyses the reaction: precorrin-6Y + NADP(+) <= precorrin-6X + NADPH. CbiJ and CobK both catalyse the reduction of macocycle in the colbalmin biosynthesis pathway.
Probab=91.45 E-value=0.71 Score=26.15 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=51.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECCCH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521--3550476310102
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSPAL 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P~~ 83 (280)
|||-|+|.-.-|+.+++.+.+...+.++. +.........+.+... ...+..-.+.+...++ +++.|||.|+|=+
T Consensus 1 ~~IlilgGT~e~r~la~~L~~~g~~~v~t--~~~~~~~~~~~~~~~~--~~G~l~~~~~m~~~i~~~~i~~vIDATHPfA 76 (246)
T pfam02571 1 MRILILGGTTEARALAAALAAAGVVSVVT--SLAGRTAAPRLPPLPV--RVGGFGGADGLAAYLREEGIDAVIDATHPFA 76 (246)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEE--CCCHHHCCCCCCCCCE--EECCCCCHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 96999973689999999998569879998--4755443766788508--9799899999999999779979998999968
Q ss_pred H---HHHHHHHHHCCCEEEE
Q ss_conf 4---7888764323721576
Q gi|254780279|r 84 T---LQSLNISAQHNIVHII 100 (280)
Q Consensus 84 ~---~~~~~~a~~~g~~vVi 100 (280)
. ....+.|.+.|+|.+-
T Consensus 77 ~~is~na~~a~~~~~ipyiR 96 (246)
T pfam02571 77 AQISRNAAAACKELGVPLLR 96 (246)
T ss_pred HHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999999985996899
No 290
>TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC). Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=91.44 E-value=0.76 Score=25.93 Aligned_cols=118 Identities=18% Similarity=0.346 Sum_probs=76.7
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHH------CCCCEEEEEEECCCCH--HHCCCHHHHCCCC-C--CCCCCCCCHHHHHCC
Q ss_conf 8737999899-8779999999983------8997899999648980--2045536660875-4--675455685785213
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHN------NPSITLHSIIVRSGSP--LIGQDVGNFVGIS-P--MGIKFSDNLAMAIQS 71 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~------~~~~eLv~~i~~~~~~--~~g~d~~~~~~~~-~--~~v~i~~dl~~~~~~ 71 (280)
.|+||+|.|| |..|=.++=.|++ +..++|. .+|-+..- +.|- .=|+..+- + .++.+++|++++|++
T Consensus 2 ~p~rV~VTGAAGQI~Y~Ll~~iA~G~~fG~Dqpv~L~-LLdIP~A~~~LeGV-~MEL~DCAFPlL~~v~~T~~p~eAF~d 79 (329)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLH-LLDIPQAMKALEGV-VMELEDCAFPLLAGVVATTDPEEAFKD 79 (329)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEE-ECCCHHHHHHHHHH-HHHHHCCCCCCCCCCEECCCHHHHHCC
T ss_conf 9537997374467899998898556104889846888-60772331133443-553530645223511221686875189
Q ss_pred CCEEEEEE--CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC-CCCEECCCHHHH
Q ss_conf 55047631--0102478887643237215765022231358999874035-552100001156
Q gi|254780279|r 72 VDGIIDFS--SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN-APIVKSSNMSLG 131 (280)
Q Consensus 72 ~DViIDFT--~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~-~~il~apN~SiG 131 (280)
+|+.+=+- +.+..++--....+|++- |. +|=+.|.++|++ +-||...|-.=.
T Consensus 80 vD~AlLvGa~PRK~GMER~DLL~~Ng~I-------F~-~QG~aLn~~Ak~~vKVLVVGNPaNT 134 (329)
T TIGR01759 80 VDVALLVGAFPRKPGMERRDLLSKNGKI-------FK-EQGKALNKVAKKDVKVLVVGNPANT 134 (329)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHCCHH-------HH-HHHHHHHHHCCCCCEEEEECCCCHH
T ss_conf 8757761366895884479998722254-------68-7999999861898569985298627
No 291
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=91.35 E-value=1.2 Score=24.49 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=44.4
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEE---CC
Q ss_conf 999899-877999999998389978999996489802045536660875467545568578521--355047631---01
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFS---SP 81 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT---~P 81 (280)
|.|.|+ |-.|+.+++.+.+ .+.++++ ++|... |+ .-.+.++.+++ ++|+||.+. .+
T Consensus 1 ILVtG~~GfiGs~l~~~L~~-~g~~v~~-~~r~~~-----D~-----------~d~~~l~~~~~~~~pd~VihlAa~~~~ 62 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAE-RGVEVVA-LDRPEL-----DL-----------TDPEAVAALVREARPDVVVNAAAYTAV 62 (284)
T ss_pred EEEECCCCHHHHHHHHHHHH-CCCEEEE-ECCCCC-----CC-----------CCHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 69964899899999999986-8998999-548625-----78-----------899999999986499799972413555
Q ss_pred C---------------HHHHHHHHHHHCCCEEEEEEC
Q ss_conf 0---------------247888764323721576502
Q gi|254780279|r 82 A---------------LTLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 82 ~---------------~~~~~~~~a~~~g~~vViGTT 103 (280)
. .+...++.|.++++++|--+|
T Consensus 63 ~~~~~~~~~~~~~Nv~~t~~l~~~~~~~~~~~i~~Ss 99 (284)
T pfam04321 63 DKAESEPELAYAVNALGPGNLAEACAARGAPLIHIST 99 (284)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 6777488889987599999999998744985798417
No 292
>PRK09414 glutamate dehydrogenase; Provisional
Probab=91.35 E-value=1.3 Score=24.41 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=68.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHH---CCCC---C----------CCCCCCCCHHH
Q ss_conf 37999899877999999998389978999996489802--04553666---0875---4----------67545568578
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNF---VGIS---P----------MGIKFSDNLAM 67 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~---~~~~---~----------~~v~i~~dl~~ 67 (280)
-+|+|-|+|+.|+..++.+.+ .+..++++.|++..-+ .|-|+..+ ...+ . .+....+.-+.
T Consensus 230 k~v~IqGfGNVg~~aA~~l~e-~GakvVavSDs~G~Iy~~~Gid~~~L~~~~~~k~~~~~~l~~y~~~~~~a~~~~~~~~ 308 (446)
T PRK09414 230 KTVVVSGSGNVAIYAIEKAME-LGAKVVTCSDSSGYVYDEDGITPEKLALLKEIKEVRRGRISEYAEEFPGAEYLEGQKP 308 (446)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCEECCCCCC
T ss_conf 879997777799999999997-6997999983786078899989999999999873379843212213899765388760
Q ss_pred HHCCCCEEEEEECCCH-HHHHHHHHHHCCCEEEE-EECCCC-HHHHHHHHHHHCCCCCEECCCH
Q ss_conf 5213550476310102-47888764323721576-502223-1358999874035552100001
Q gi|254780279|r 68 AIQSVDGIIDFSSPAL-TLQSLNISAQHNIVHII-GTTGFS-VKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 68 ~~~~~DViIDFT~P~~-~~~~~~~a~~~g~~vVi-GTTG~~-~e~~~~l~~~s~~~~il~apN~ 128 (280)
.-.+|||+|=+..... ..++++....+|..+|+ |.-|=+ ++-.+.|.+ ..|++.|-+
T Consensus 309 ~~~~cDIliPaA~qn~I~~~nA~~l~a~gck~V~EGAN~P~T~eA~~il~~----~gi~v~Pd~ 368 (446)
T PRK09414 309 WSVPCDIALPCATQNELDGEDAKTLIANGVKAVAEGANMPSTPEAIDVFLE----AGVLFAPGK 368 (446)
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH----CCCEEECHH
T ss_conf 023554895322257889999999997697699965899989899999998----898895826
No 293
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.32 E-value=0.68 Score=26.28 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=29.3
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEE-EEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 737999899-87799999999838997899-9996489802045536660875467545568578521355047
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLH-SIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv-~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
.++|+|+|. -|. -.+++.+.+. +.++. .+++..+. ...++.....+++.+..+|++|
T Consensus 2 g~~iaviGGD~Rq-~~l~~~L~~~-g~~V~~~gf~~~~~-------------~~~~~~~~~~~~~~~~~~d~iI 60 (296)
T PRK08306 2 GMHIAVIGGDARQ-LELIRKLVEL-GAKVSLVGFDQLDH-------------GFTGVAKCSSLEEALSDVDVII 60 (296)
T ss_pred CCEEEEECCCHHH-HHHHHHHHHC-CCEEEEEECCCCCC-------------CCCCEEEECCHHHHHHCCCEEE
T ss_conf 9489997875899-9999999977-99799983576555-------------6676177346788872399999
No 294
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=91.14 E-value=1.3 Score=24.28 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=62.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHHCCCC--------CCCCCCCCCHHHHHCCCCE
Q ss_conf 737999899877999999998389978999996489802--045536660875--------4675455685785213550
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNFVGIS--------PMGIKFSDNLAMAIQSVDG 74 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~~~~~--------~~~v~i~~dl~~~~~~~DV 74 (280)
..+|+|-|+|+.|+..++.+.+ .+..++++.|.+..-+ -+.+........ +..-.++.+ +..-.+|||
T Consensus 23 g~~vaVqGfGnVG~~~a~~l~~-~GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DI 100 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE-AILGLDVDI 100 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCE
T ss_conf 9999998988999999999998-59989999857871778999869999999981896536665305986-500367768
Q ss_pred EEEEECCCHH-HHHHHHHHHCCCEEEEEE-CCC-CHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 4763101024-788876432372157650-222-3135899987403555210000115
Q gi|254780279|r 75 IIDFSSPALT-LQSLNISAQHNIVHIIGT-TGF-SVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 75 iIDFT~P~~~-~~~~~~a~~~g~~vViGT-TG~-~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
+|=+...... .++++. .+..+|++- -|- +++-.+.|.+ ..|++.|-+-.
T Consensus 101 liPaAl~~~I~~~~a~~---i~ak~I~EgAN~P~t~ea~~iL~~----rgI~viPD~la 152 (217)
T cd05211 101 FAPCALGNVIDLENAKK---LKAKVVAEGANNPTTDEALRILHE----RGIVVAPDIVA 152 (217)
T ss_pred EEECCCCCCCCHHHHHH---HCCEEEECCCCCCCCHHHHHHHHH----CCCEEECHHHH
T ss_conf 96424458879899987---177289506789989789999997----89989476884
No 295
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.13 E-value=0.69 Score=26.20 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=36.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
++||+|+|+.|+.+++... .=+|++.+ +|.... . ...+..-..++++++..+|+|.
T Consensus 153 tlGIIG~G~IG~~VA~~a~-~fGm~Vi~-yD~~~~----------~--~~~~~~~~~sl~ell~~sD~Is 208 (409)
T PRK11790 153 TLGIVGYGHIGTQLSVLAE-SLGMRVIF-YDIEDK----------L--PLGNATQVGSLEELLAQSDVVS 208 (409)
T ss_pred EEEEECCCHHHHHHHHHHH-HCCCEEEE-ECCHHH----------C--CCCCCEECCCHHHHHHHCCEEE
T ss_conf 8986367547699999998-76998999-786021----------2--5668467488999987599999
No 296
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.91 E-value=1.2 Score=24.69 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=101.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC----CC
Q ss_conf 79998998779999999983899789999964898020455366608754675455685785213550476310----10
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS----PA 82 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~----P~ 82 (280)
+|+|+|||--|++-. +-.++.++.++-++-..... +......|..+ .+.+++.+.+|||+-.++ |+
T Consensus 20 ~iaIIGYGsQG~aha-lNlRDSGlnViiGlr~g~~s--------~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~q~~ 89 (338)
T COG0059 20 KVAIIGYGSQGHAQA-LNLRDSGLNVIIGLRKGSSS--------WKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQQKE 89 (338)
T ss_pred EEEEEECCHHHHHHH-HHHHHCCCCEEEEECCCCHH--------HHHHHHCCCEE-ECHHHHHHCCCEEEEECCHHHHHH
T ss_conf 699990270878887-42242487479985688724--------89999669775-139998522799998186546789
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC-CEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 247888764323721576502223135899987403555-2100001156899999999999861156660089999864
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP-IVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHH 161 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~-il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH 161 (280)
...+.++-.++.|..+.. .-||+-.. ..+ .--+.+. ++.||-- -|--+-.. |.. +...- .++-.|+
T Consensus 90 vy~~~I~p~Lk~G~aL~F-aHGfNihf-~~i-~ppkdvdV~MVAPKg-PG~~VR~~-------y~~-G~GvP-~LiAV~q 156 (338)
T COG0059 90 VYEKEIAPNLKEGAALGF-AHGFNIHF-GLI-VPPKDVDVIMVAPKG-PGHLVRRE-------YKE-GFGVP-ALIAVHQ 156 (338)
T ss_pred HHHHHHHHHHCCCCEEEE-CCCCCEEC-CCC-CCCCCCCEEEECCCC-CCHHHHHH-------HHC-CCCCE-EEEEEEE
T ss_conf 999874345227866776-26553113-303-377667189983899-96789999-------873-69951-6999986
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE---CCCCCEEEEEEEECCCCE
Q ss_conf 1678998678999999998532887642211123576765433456501375---288205799998189958
Q gi|254780279|r 162 RRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLR---AGSIVGEHSVVIAGEGES 231 (280)
Q Consensus 162 ~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R---~g~~~g~H~V~f~~~~E~ 231 (280)
| |||+|+.+|.+.+.+-+-.... |--.|.| .-+..|+|.|++++--+-
T Consensus 157 ----D-~sG~a~~~Ala~AkgiGg~RaG-----------------vieTTFkeEtetDLfGEQ~vLcGgl~~l 207 (338)
T COG0059 157 ----D-ASGKALDIALAYAKGIGGTRAG-----------------VIETTFKEETETDLFGEQAVLCGGLQAL 207 (338)
T ss_pred ----C-CCCCHHHHHHHHHHHCCCCCCC-----------------EEEEEEHHHHHHCCCCCHHHHHHHHHHH
T ss_conf ----6-8850999999999761887631-----------------4764208766401111211120079999
No 297
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.86 E-value=0.86 Score=25.57 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=36.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
.+||+|+||.|+.+++... .=+|++.+ +|+ +...+... ..++... ++++++..+|+|.
T Consensus 140 tlGIiG~G~IG~~vA~~~~-~fgm~Vi~-yDP----~~~~~~~~-----~~gv~~~-~l~ell~~sD~Is 197 (524)
T PRK13581 140 TLGVIGLGRIGSEVAKRAK-AFGMKVIA-YDP----YISPERAA-----QLGVELV-ELDELLARADFIT 197 (524)
T ss_pred EEEEECCCHHHHHHHHHHH-HCCCEEEE-ECC----CCCHHHHH-----HCCCEEE-EHHHHHHHCCEEE
T ss_conf 8999776757899999998-54974788-777----64466798-----7196686-0899731088999
No 298
>KOG1014 consensus
Probab=90.85 E-value=0.49 Score=27.24 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=58.8
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC-CCC-EEEEEECCCHH
Q ss_conf 999899-877999999998389978999996489802045536660875467545568578521-355-04763101024
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ-SVD-GIIDFSSPALT 84 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~-~~D-ViIDFT~P~~~ 84 (280)
.+|.|+ ...|++.++++++ .++. +..+.|+.++... +..++++.-. .+. +++|||.|+..
T Consensus 52 AVVTGaTDGIGKayA~eLAk-rG~n-vvLIsRt~~KL~~---------------v~kEI~~~~~vev~~i~~Dft~~~~~ 114 (312)
T KOG1014 52 AVVTGATDGIGKAYARELAK-RGFN-VVLISRTQEKLEA---------------VAKEIEEKYKVEVRIIAIDFTKGDEV 114 (312)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCE-EEEEECCHHHHHH---------------HHHHHHHHHCCEEEEEEEECCCCCHH
T ss_conf 99977888522999999997-5987-9999688899999---------------99999887580799999864898156
Q ss_pred HHHHHH-HHHCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 788876-4323721576502223135899987403
Q gi|254780279|r 85 LQSLNI-SAQHNIVHIIGTTGFSVKENEVISSFAR 118 (280)
Q Consensus 85 ~~~~~~-a~~~g~~vViGTTG~~~e~~~~l~~~s~ 118 (280)
++.++. +....+.+.|---|.+.+.-+.+-+...
T Consensus 115 ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~ 149 (312)
T KOG1014 115 YEKLLEKLAGLDVGILVNNVGMSYDYPESFLKYPE 149 (312)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCH
T ss_conf 89999886278648999655316788377873855
No 299
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.83 E-value=1.1 Score=24.89 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=44.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-HHCCCHHHHC---CCCCCCCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 73799989987799999999838997899999648980-2045536660---8754675455685785213550476310
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-LIGQDVGNFV---GISPMGIKFSDNLAMAIQSVDGIIDFSS 80 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-~~g~d~~~~~---~~~~~~v~i~~dl~~~~~~~DViIDFT~ 80 (280)
+|||+|+|+|-||..+...+.+. +.++.. ++|.... ..-++-+-.. .......++..........+|++|=++-
T Consensus 2 ~MkI~IiGaGAiG~~~a~~L~~a-g~dV~l-v~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~D~vivavK 79 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-GLPVRL-ILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAPEPIHRLLVACK 79 (305)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCEEE-EEECHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 98899988239999999999848-997399-9947899999997899899868955787404657665788778999804
Q ss_pred CCHHHH---HHHHHHHCCCEEEEEECCCC
Q ss_conf 102478---88764323721576502223
Q gi|254780279|r 81 PALTLQ---SLNISAQHNIVHIIGTTGFS 106 (280)
Q Consensus 81 P~~~~~---~~~~a~~~g~~vViGTTG~~ 106 (280)
...+.+ .++-++.-+..+|+--=|+.
T Consensus 80 ~~~~~~a~~~l~~~l~~~t~Iv~lQNGlg 108 (305)
T PRK05708 80 AYDAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 25689999998864499958999437764
No 300
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=90.78 E-value=0.37 Score=28.06 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=27.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 3799989987799999999838997899999
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSII 36 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i 36 (280)
||+...|+|+.||..+..+..+.+++++.+-
T Consensus 1 mKavhFGAGNigRGFI~~ll~~~g~~v~Fvd 31 (381)
T PRK02318 1 MKALHFGAGNIGRGFIGKLLADNGFEVTFAD 31 (381)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9469978742212668999997797699995
No 301
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.76 E-value=0.61 Score=26.59 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=38.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHH---HHC--CC-CEEEEEE-
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578---521--35-5047631-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAM---AIQ--SV-DGIIDFS- 79 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~---~~~--~~-DViIDFT- 79 (280)
+|.|+|+|-+|...++.. +.-+.+-+.+++.++.+. +.....|....--.-..+.++ ... .. ||++|++
T Consensus 163 ~vlV~GaG~vGl~aiq~a-k~~Ga~~V~~~d~~~~kl---~~a~~lGAd~~i~~~~~~~~~~~~~~~~~~~d~vvid~~G 238 (347)
T PRK10309 163 NVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEKL---ALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred EEEEECCCCHHHHHHHHH-HHCCCCEEEEEECCHHHH---HHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCC
T ss_conf 699989983899999999-985997699992899999---9999729989986887799999998629988869997999
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 010247888764323721576502
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTT 103 (280)
.|......++.+...|.-+++|+.
T Consensus 239 ~~~~~~~a~~~~~~~G~iv~~G~~ 262 (347)
T PRK10309 239 VPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 989999999961897499998057
No 302
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.63 E-value=1.1 Score=24.75 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=50.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCC--HHHHHCC--CC-EEE
Q ss_conf 988737999899877999999998389978999996489802045536660875467545568--5785213--55-047
Q gi|254780279|r 2 HQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN--LAMAIQS--VD-GII 76 (280)
Q Consensus 2 ~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~d--l~~~~~~--~D-ViI 76 (280)
.....|+.|+|+|.-|..++++....+.+..++.+|.+.. ..|+. -.|+++... ..+++++ .+ ++|
T Consensus 113 ~~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~-~~g~~--------i~Gv~V~g~~~i~~~v~~~~~~~iii 183 (588)
T COG1086 113 KDNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPD-LTGMK--------IRGVPVLGRIEIERVVEELGIQLILI 183 (588)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCHH-HCCCE--------EECEEEECHHHHHHHHHHCCCCEEEE
T ss_conf 4678866999376589999999974899615999888736-51887--------70226423147999999718766999
Q ss_pred EEECCCH----HHHHHHHHHHCCCEE
Q ss_conf 6310102----478887643237215
Q gi|254780279|r 77 DFSSPAL----TLQSLNISAQHNIVH 98 (280)
Q Consensus 77 DFT~P~~----~~~~~~~a~~~g~~v 98 (280)
.-|++ ..+.++.|.+.++.+
T Consensus 184 --Aips~~~~~~~~i~~~l~~~~~~v 207 (588)
T COG1086 184 --AIPSASQEERRRILLRLARTGIAV 207 (588)
T ss_pred --ECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf --648788999999999987559707
No 303
>KOG2304 consensus
Probab=90.54 E-value=0.19 Score=30.09 Aligned_cols=35 Identities=11% Similarity=0.475 Sum_probs=23.7
Q ss_pred CE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 73-79998998779999999983899789999964898
Q gi|254780279|r 5 PM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS 41 (280)
Q Consensus 5 ~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~ 41 (280)
+| .|+|+|+|.||.-|++ +..+.++.+ +.++++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQ-v~a~sg~~V-~l~d~~~~ 45 (298)
T KOG2304 10 EIKNVAIVGAGQMGSGIAQ-VAATSGLNV-WLVDANED 45 (298)
T ss_pred CCCCEEEECCCCCCHHHHH-HHHHCCCCE-EEECCCHH
T ss_conf 5662478756643203999-988519946-98547778
No 304
>TIGR01202 bchC Chlorophyll synthesis pathway, bchC; InterPro: IPR005903 Some prokaryotes, such as the purple and green sulphur bacteria, gain energy from a mode of photosynthesis that does not generate oxygen, and is inhibited by its presence , . These organisms do not include chlorophylls in their photosynthetic pigments, but instead use closely related molecules known as bacteriochlorophylls. Like chlorophylls, bacteriochlorophylls are tetrapyroles with a five-membered ring structure, differing in the side chains and hydration state of the ring structure. These alterations in structure determine what light wavelengths can be harvested by the organism . Bacteriochlorophyll a is a photosynthetic pigment found in many of the purple bacteria. It is synthesised from protoporphyrin IX in a series of reactions including magnesium-chelation, methyl transfer, ring formation, vinyl-group reduction protochlorophyllide reduction, and finally phytol addition . This entry represents 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase, the enzyme catalysing the penultimate step in light-independent bacteriochlorophyll a biosynthesis .; GO: 0016491 oxidoreductase activity, 0030494 bacteriochlorophyll biosynthetic process.
Probab=90.46 E-value=0.61 Score=26.57 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=64.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEE-CC
Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521--355047631-01
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFS-SP 81 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT-~P 81 (280)
..++.|+|-|-+|+.+++.. ..-+.+++.+++.+..+..+..-++.+. |-.+|.+-++. +.++|+|.| .|
T Consensus 155 ~~pdLivG~G~lGrLlArLt-~~aG~~~p~VwEt~~~R~~~a~gy~v~~------P~~ddvsval~rrdy~~i~D~sG~~ 227 (325)
T TIGR01202 155 VLPDLIVGHGTLGRLLARLT-VAAGGSPPAVWETNPRRRDGATGYEVLD------PEKDDVSVALPRRDYRAIYDASGDP 227 (325)
T ss_pred CCCCEEEECCHHHHHHHHHH-HHCCCCCCEEECCCHHHHHCCCCCEEEC------CCCCCEEEEECCCCEEEEEECCCCH
T ss_conf 78712871678999999999-9718976355478668730145640337------7434635742587301787157867
Q ss_pred CHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 024788876432372157650222313
Q gi|254780279|r 82 ALTLQSLNISAQHNIVHIIGTTGFSVK 108 (280)
Q Consensus 82 ~~~~~~~~~a~~~g~~vViGTTG~~~e 108 (280)
+.....++...++|+-+. .||..+
T Consensus 228 ~~id~lv~rL~kgGe~vl---~GfYt~ 251 (325)
T TIGR01202 228 SLIDTLVRRLAKGGEIVL---AGFYTE 251 (325)
T ss_pred HHHHHHHHHHHCCCEEEE---ECCCCC
T ss_conf 899999998732997998---033577
No 305
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.46 E-value=0.59 Score=26.66 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=14.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 7999899877999999998389978999996489
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG 40 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~ 40 (280)
+|.|.|+|-++++++-.+.+ .+..-+.++.|+.
T Consensus 129 ~vlilGaGGaa~ai~~al~~-~g~~~i~I~nR~~ 161 (284)
T PRK12549 129 RVVQLGAGGAGAAVAHALLT-LGVERLTLFDVDP 161 (284)
T ss_pred EEEEECCCCHHHHHHHHHHH-CCCCEEEEEECCH
T ss_conf 18996566168999999997-6999899997988
No 306
>KOG2653 consensus
Probab=90.36 E-value=1.3 Score=24.28 Aligned_cols=40 Identities=33% Similarity=0.411 Sum_probs=28.9
Q ss_pred CCCC-CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH
Q ss_conf 9988-73799989987799999999838997899999648980
Q gi|254780279|r 1 MHQS-PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP 42 (280)
Q Consensus 1 M~~~-~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~ 42 (280)
|.+. +++|+++|-+-|||.++-.+ .+.++.+. ++.|..++
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~-~d~Gf~v~-~yNRT~sk 41 (487)
T KOG2653 1 MSQTPKADIGLIGLAVMGQNLILNI-ADKGFTVC-AYNRTTSK 41 (487)
T ss_pred CCCCCCCCEEEHHHHHHHHHHHCCC-CCCCCEEE-EECCCHHH
T ss_conf 9977644100011665024552001-04683589-86461476
No 307
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=90.18 E-value=1.6 Score=23.71 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=22.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 999899877999999998389978999996489
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG 40 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~ 40 (280)
|+|+|+|-||..++..+.+ .+.+++.+ .|.+
T Consensus 1 I~IiGaGaiG~~~a~~L~~-ag~~V~lv-~R~~ 31 (150)
T pfam02558 1 IAILGAGAVGSLYGARLAR-AGHDVTLI-ARGR 31 (150)
T ss_pred CEEECCCHHHHHHHHHHHH-CCCEEEEE-ECCC
T ss_conf 9999668999999999997-79928999-7563
No 308
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=90.13 E-value=1.6 Score=23.69 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=54.7
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-----CCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 37999899-8779999999983899789999964898020455366608754-----67545568578521355047631
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-----MGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-----~~v~i~~dl~~~~~~~DViIDFT 79 (280)
-+|.|.|+ |=.|+.+++.+.+.-+...+-.+++++.... .......... .++.-.+.+..+++++|+|+-+.
T Consensus 5 K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~--~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~vD~VfHaA 82 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW--EMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA 82 (324)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH--HHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECC
T ss_conf 9999907977999999999997299828999668640328--89851689875999677778899997634888999946
Q ss_pred C----------C--------CHHHHHHHHHHHCCCEEEE-EEC
Q ss_conf 0----------1--------0247888764323721576-502
Q gi|254780279|r 80 S----------P--------ALTLQSLNISAQHNIVHII-GTT 103 (280)
Q Consensus 80 ~----------P--------~~~~~~~~~a~~~g~~vVi-GTT 103 (280)
. | -++.+.++.|.++++.-++ -+|
T Consensus 83 A~khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iST 125 (324)
T TIGR03589 83 ALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred CCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 2776726776989999999799999999988555431786226
No 309
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=90.12 E-value=1.2 Score=24.50 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=55.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCE-----EEEEEECCCC-------------HHHCCCHHHHC-----CCCC-C-----
Q ss_conf 7999899877999999998389978-----9999964898-------------02045536660-----8754-6-----
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSIT-----LHSIIVRSGS-------------PLIGQDVGNFV-----GISP-M----- 57 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~e-----Lv~~i~~~~~-------------~~~g~d~~~~~-----~~~~-~----- 57 (280)
||.++|||-+|-++++.++... +. .+.++|.+.- ..+|+.-.+.. ...+ .
T Consensus 1 kvlvVGAGgIGCEllKnlal~G-~~~~~~G~i~v~D~D~Ie~SNLnRQFLFr~~digk~Ks~vA~~~v~~~np~~~i~~~ 79 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMG-VGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHCC-CCCCCCCCEEEEECCCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899937764189999999838-786898808997088473357534427564448973999999999987899747860
Q ss_pred CCCC---CCC--HHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEE-EECCCCH
Q ss_conf 7545---568--578521355047631-010247888764323721576-5022231
Q gi|254780279|r 58 GIKF---SDN--LAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHII-GTTGFSV 107 (280)
Q Consensus 58 ~v~i---~~d--l~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vVi-GTTG~~~ 107 (280)
.-.+ +++ -+..++..|+|+..- +-++-...-+.|+.+++|+|= ||+|+.-
T Consensus 80 ~~~v~~~te~~f~~~f~~~~d~v~naLDNv~aR~yv~~~Cv~~~~PLiEsGT~G~kG 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKG 136 (435)
T ss_pred CCCCCCCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 254567742336776784388999885788999999999997499837446787675
No 310
>KOG0409 consensus
Probab=90.08 E-value=0.65 Score=26.39 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=38.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 8737999899877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
+..||+-+|-|.||...+..+.+. ++.++ +++|...+.. ++ ...|..+.+...++.+.+||+|
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~-G~kVt-V~dr~~~k~~--~f------~~~Ga~v~~sPaeVae~sDvvi 96 (327)
T KOG0409 34 SKTRIGFIGLGNMGSAMVSNLIKA-GYKVT-VYDRTKDKCK--EF------QEAGARVANSPAEVAEDSDVVI 96 (327)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHC-CCEEE-EEECCHHHHH--HH------HHHCHHHHCCHHHHHHHCCEEE
T ss_conf 655135774341118999999975-98799-9958678878--99------9705014079799986368899
No 311
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=89.93 E-value=1.7 Score=23.58 Aligned_cols=117 Identities=10% Similarity=0.144 Sum_probs=65.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHHCCCCC-----------CCCCCCCCHHHHHCCC
Q ss_conf 37999899877999999998389978999996489802--0455366608754-----------6754556857852135
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNFVGISP-----------MGIKFSDNLAMAIQSV 72 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~~~~~~-----------~~v~i~~dl~~~~~~~ 72 (280)
.+|+|-|+|+.|+..++.+.+ .+..++++.|.+..-+ .|-|+.++..... .+....++-+..-.+|
T Consensus 33 ~~v~IqGfGnVG~~~a~~l~~-~GakvvavsD~~G~i~~~~Gldi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 111 (237)
T pfam00208 33 KTVAVQGFGNVGSYAAEKLLE-LGAKVVAVSDSSGYIYDPNGIDIEELLELKEEGGGRVVEYAGSGAEYISGEELWEIDC 111 (237)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHCCEEECCCCCCCEECCCCCCCCCCC
T ss_conf 999998988999999999998-7996999982876799999999999999999719843124665753448710004766
Q ss_pred CEEEEEECCCHH-HHHHHHHHHCCCEEEEEE-CCC-CHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 504763101024-788876432372157650-222-3135899987403555210000115
Q gi|254780279|r 73 DGIIDFSSPALT-LQSLNISAQHNIVHIIGT-TGF-SVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 73 DViIDFT~P~~~-~~~~~~a~~~g~~vViGT-TG~-~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
||+|=+..+... .++++ +.+.++|++- -|- +++-.+.|++ ..|++.|-+..
T Consensus 112 DIliPaA~~~~I~~~na~---~i~ak~I~EgAN~p~t~eA~~~L~~----rgI~viPD~la 165 (237)
T pfam00208 112 DILVPCATQNEINEENAK---LIKAKAVVEGANMPTTPEADEILEE----RGILYAPDKAA 165 (237)
T ss_pred CEEEECCCCCCCCHHHHH---HCCCCEEEECCCCCCCHHHHHHHHH----CCCEEECHHHH
T ss_conf 688644556889989998---6275489753789889789999998----89989680775
No 312
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=89.93 E-value=1.7 Score=23.58 Aligned_cols=91 Identities=19% Similarity=0.312 Sum_probs=59.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH------CCCCEEEEEE-
Q ss_conf 799989987799999999838997899999648980204553666087546754556857852------1355047631-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI------QSVDGIIDFS- 79 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~------~~~DViIDFT- 79 (280)
.|+|.|||=+|=+- -+|++..+..=|-+.|.++.+. .+....|....=-....|+.... +-+||+.+||
T Consensus 164 ~vlv~GaGPiGlma-~AVAKa~GA~~Vi~~d~neyRl---eLAkk~Gat~~vn~~kEd~~k~v~~lt~geG~Dv~lEmSG 239 (341)
T TIGR00692 164 DVLVIGAGPIGLMA-VAVAKAAGARNVIVIDKNEYRL---ELAKKMGATRVVNVAKEDLVKVVAELTSGEGVDVVLEMSG 239 (341)
T ss_pred CEEEECCCHHHHHH-HHHHHHHCCCEEEEECCCHHHH---HHHHHCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEECCC
T ss_conf 18998577478999-9998772784059965864799---9998709865870101476898884038896479986489
Q ss_pred CCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 0102478887643237215765
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIG 101 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViG 101 (280)
.|.+...-+..+...|.--+.|
T Consensus 240 aP~A~~~gL~~~~~gGR~~~Lg 261 (341)
T TIGR00692 240 APKALEQGLDAVANGGRVALLG 261 (341)
T ss_pred CCHHHHHHHHHHCCCCEEEECC
T ss_conf 9179999999850688089813
No 313
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.82 E-value=0.79 Score=25.83 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=36.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
-.|||+|+|++|+.+++... .=++++.+ +|..... . .+..-..++++++..+|+|.
T Consensus 117 ktvGIIG~G~IG~~va~~l~-afG~~vl~-~DP~~~~---~----------~~~~~~~sleell~~sDiIs 172 (379)
T PRK00257 117 RTYGIVGVGHVGGRLVRVLR-GLGWKVLV-CDPPRQE---A----------EGDGDFVSLERILEECDIIS 172 (379)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEE-ECCHHHH---H----------HCCCCEECHHHHHHHCCEEE
T ss_conf 87999771679999999999-77998999-7845766---4----------33860334999987499999
No 314
>pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.
Probab=89.79 E-value=1.7 Score=23.51 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=36.4
Q ss_pred EECC-CHHHHHHHHHHHHCCC-CEEEEEEECCCCHHHCCCHHHHCCCC--CCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 9899-8779999999983899-78999996489802045536660875--46754556857852135504763
Q gi|254780279|r 10 VLGG-GRMGQALIKEIHNNPS-ITLHSIIVRSGSPLIGQDVGNFVGIS--PMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 10 I~Ga-GkMG~~ii~~i~~~~~-~eLv~~i~~~~~~~~g~d~~~~~~~~--~~~v~i~~dl~~~~~~~DViIDF 78 (280)
|.|+ |-.|+.+++.+.+... .++. ++++..++....+........ ..++.-.+.+..+++.+|+||-+
T Consensus 2 VTGg~GFIGs~lv~~Ll~~g~~~~V~-~~d~~~~~~~~~~~~~~~~~~~v~gDl~d~~~l~~~~~~~D~V~H~ 73 (280)
T pfam01073 2 VTGGGGFLGRHIVRLLLREGELQEVR-VFDLRFSPELLEDFSKLQVITYIEGDVTDKQDLRRALQGSDVVIHT 73 (280)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEE-EEECCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEE
T ss_conf 05867599999999999779975799-9878898678887322588759991289999999998479989972
No 315
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.70 E-value=1.1 Score=24.96 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=42.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763101
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSP 81 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P 81 (280)
=+|.|+|+|-.+++++..+.+. +..=+.++.|+..+. .++....+....... ..+......++|+||-.|+.
T Consensus 20 k~vlIlGaGGaarai~~aL~~~-g~~~I~i~nR~~~r~--~~l~~~~~~~~~~~~-~~~~~~~~~~~dliIN~tp~ 91 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKA--KALAERFGELGIAIA-YLDLEELLAEADLIINTTPV 91 (155)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCEEEEEECCHHHH--HHHHHHHHHCCCCEE-ECCHHHHHCCCCEEEECCCC
T ss_conf 9999986758999999999971-998228860899999--999998501366401-04534431568879876778
No 316
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=89.69 E-value=1.4 Score=24.08 Aligned_cols=189 Identities=12% Similarity=0.186 Sum_probs=101.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH--
Q ss_conf 379998998779999999983899789999964898020455366608754675455685785213550476310102--
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL-- 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~-- 83 (280)
-||+|+|||--|+.- .+=.++.++.++.++-........ ..+......|..+ ...+++.+.+|+|+-.|+-+.
T Consensus 38 KkI~IiG~GsQG~aq-aLNlRDSGldV~~~LR~~si~~k~---~Sw~~A~~~Gf~V-~t~eeai~~ADvV~~LtPD~q~~ 112 (489)
T PRK05225 38 KKIVIVGCGAQGLNQ-GLNMRDSGLDISYALRKEAIAEKR---ASWRKATENGFKV-GTYEELIPQADLVVNLTPDKQHS 112 (489)
T ss_pred CEEEEECCCHHHHHH-HCCCCCCCCCEEEEECCCHHHHHH---HHHHHHHHCCCCC-CCHHHHHHCCCEEEEECCCCCHH
T ss_conf 859998036587776-524410588569995553033416---6799999779964-67899732358788708855148
Q ss_pred -HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -4788876432372157650222313589998740355521000011568999999999998611566600899998641
Q gi|254780279|r 84 -TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHR 162 (280)
Q Consensus 84 -~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~ 162 (280)
+.+.+.-..+.|..+.. +-||+--. .. .+.-+.+.|+...-=+-|--+=. .|...+.-+. ++-.|.
T Consensus 113 ~v~~~i~p~mk~g~~L~f-aHGfnI~~-~~-i~~r~di~V~MvAPK~PG~~VR~-------~y~~G~GvP~--LiAvh~- 179 (489)
T PRK05225 113 DVVRAVQPLMKQGAALGY-SHGFNIVE-EG-EQIRKDITVVMVAPKCPGTEVRE-------EYKRGFGVPT--LIAVHP- 179 (489)
T ss_pred HHHHHHHHHHCCCCEEEE-CCCCEEEE-CC-CCCCCCCEEEEECCCCCCHHHHH-------HHHCCCCCCE--EEEECC-
T ss_conf 999999876126772111-45650553-12-31688863899758999648999-------9862799744--999701-
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECC
Q ss_conf 678998678999999998532887642211123576765433456501375288205799998189
Q gi|254780279|r 163 RKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGE 228 (280)
Q Consensus 163 ~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~ 228 (280)
..-|||.|+.+|.+.+.+.+-..-... +-.|..--.-+..|+++|+++.-
T Consensus 180 --~~d~~g~~~~~a~aya~~~Gg~raGvl--------------ettF~~E~etDLfGEQ~vLCG~l 229 (489)
T PRK05225 180 --ENDPKGEGMAIAKAWAAATGGHRAGVL--------------ESSFVAEVKSDLMGEQTILCGML 229 (489)
T ss_pred --CCCCCCHHHHHHHHHHHHCCCCCCCEE--------------ECCHHHHHHHHHHCCHHHHHHHH
T ss_conf --359875389999999985189755536--------------31068776643210055543001
No 317
>PRK06444 prephenate dehydrogenase; Provisional
Probab=89.67 E-value=1.3 Score=24.34 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=20.7
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEE
Q ss_conf 37999899-87799999999838997899
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLH 33 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv 33 (280)
|+.+|+|. ||||+-+++.. ...++++.
T Consensus 1 ~~~~iig~~gr~g~~~~~~~-~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSIL-DDNGLGVY 28 (197)
T ss_pred CCEEEECCCCCHHHHHHHHH-CCCCCEEE
T ss_conf 91699637871668999997-03784789
No 318
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.66 E-value=1.8 Score=23.44 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=77.2
Q ss_pred CEEEEEEC--C-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC--CCCCCCCCHHHHHCCCCEEEEEE
Q ss_conf 73799989--9-8779999999983899789999964898020455366608754--67545568578521355047631
Q gi|254780279|r 5 PMRISVLG--G-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP--MGIKFSDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 5 ~IkV~I~G--a-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~--~~v~i~~dl~~~~~~~DViIDFT 79 (280)
.++|.++. . |++|.. +++.++..--+|.=+ . +......+-.....+... .+..+.+++++++..+|.+|--|
T Consensus 4 ~i~iVLVep~~~gNIG~v-ARaMKNfGl~eL~LV-~-Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~v~aTt 80 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSV-ARAMKNFGLSELRLV-N-PRAGLDEEARALAAGARDILENAKIVDTLEEALADCDLVVATT 80 (242)
T ss_pred CCEEEEECCCCCCCHHHH-HHHHHHCCCCEEEEE-C-CCCCCCHHHHHHHCCCHHHHCCCEEECCHHHHHCCCCEEEEEC
T ss_conf 617999758887527999-999986796648997-8-9889889999986466666506766467999960788799805
Q ss_pred C--------CCHHHHHHHHHHH----CCCEEEEE--ECCCCHHHHHHHHHHHCCCC---CEECCCHHHHHHHHHHHHHH
Q ss_conf 0--------1024788876432----37215765--02223135899987403555---21000011568999999999
Q gi|254780279|r 80 S--------PALTLQSLNISAQ----HNIVHIIG--TTGFSVKENEVISSFARNAP---IVKSSNMSLGINFLGFLVET 141 (280)
Q Consensus 80 ~--------P~~~~~~~~~a~~----~g~~vViG--TTG~~~e~~~~l~~~s~~~~---il~apN~SiGv~ll~~l~~~ 141 (280)
. +-.-.+......+ .++.+|.| .+|++.|+++.-..+. .|| -.-+=|.|--|.++.--+.+
T Consensus 81 ar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c~~~v-~IP~~p~Y~sLNLa~AV~ii~YEl~~ 158 (242)
T COG0565 81 ARSRDLLRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALCDVLV-TIPANPDYPSLNLAQAVQVILYELRK 158 (242)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHEEE-ECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 6667665565687878999998714897699978866897889998502787-36799865436599999999999998
No 319
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent; InterPro: IPR010097 This entry represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exist in eukaryotes. In Saccharomyces cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=89.62 E-value=0.95 Score=25.27 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=41.4
Q ss_pred EEEEECC-CHHHHHHHHHHHHC-CCCE-----------EEEEEECCC-CH-HHCCCHHHHCCCCC-CCCCCCCC------
Q ss_conf 7999899-87799999999838-9978-----------999996489-80-20455366608754-67545568------
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNN-PSIT-----------LHSIIVRSG-SP-LIGQDVGNFVGISP-MGIKFSDN------ 64 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~-~~~e-----------Lv~~i~~~~-~~-~~g~d~~~~~~~~~-~~v~i~~d------ 64 (280)
||||+|| |=.||.+.=++..+ +..+ =-..+|-.+ .. =++.|++=+-.... .+..=.+.
T Consensus 1 KVAVLGA~GGIGQpLSLLLK~~Lp~~slkesnrsvthi~L~LYDi~~ea~~GVa~DLSHI~T~~~v~gf~~~~~~hkrdP 80 (379)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQLPQVSLKESNRSVTHIELSLYDIKGEAAEGVAADLSHIDTAASVKGFSGEEGDHKRDP 80 (379)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 96898558642146899998517645752036505677765303456656764313442178645704468888865660
Q ss_pred -HHHHHCCCCEEE
Q ss_conf -578521355047
Q gi|254780279|r 65 -LAMAIQSVDGII 76 (280)
Q Consensus 65 -l~~~~~~~DViI 76 (280)
++.+++++|||+
T Consensus 81 ~l~~~L~~advVv 93 (379)
T TIGR01772 81 ALENALKGADVVV 93 (379)
T ss_pred CHHHHHHCCCEEE
T ss_conf 1488862795899
No 320
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=89.45 E-value=1 Score=24.98 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=62.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCC-C-CCC--CCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 3799989987799999999838997899999648980204553666087-5-467--54556857852135504763101
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGI-S-PMG--IKFSDNLAMAIQSVDGIIDFSSP 81 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~-~-~~~--v~i~~dl~~~~~~~DViIDFT~P 81 (280)
=++|++|||+--..=++++.+=-|++=|-+.+|.+.... .|+.. . ... +..+.+..|....|||+|-- +|
T Consensus 130 sv~G~iGaG~QA~tQL~Al~rVfd~eeV~~y~rt~~~~~-----kF~~~~skd~~~~~~a~~~p~E~v~~cDilVTt-TP 203 (327)
T TIGR02371 130 SVLGLIGAGRQAYTQLEALSRVFDLEEVKVYSRTKEAAE-----KFVKRASKDYEVPVRAATDPAEKVEDCDILVTT-TP 203 (327)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHHHHCCCCCCEEECCCCHHHHCCCCEEEEE-CC
T ss_conf 335576368579999999876255450699861768899-----999875202465124212674777078679985-68
Q ss_pred CHHHHH--HHHHHHCCCEE-EEEECCCCHHHHH
Q ss_conf 024788--87643237215-7650222313589
Q gi|254780279|r 82 ALTLQS--LNISAQHNIVH-IIGTTGFSVKENE 111 (280)
Q Consensus 82 ~~~~~~--~~~a~~~g~~v-ViGTTG~~~e~~~ 111 (280)
+= ... ++| .+-|.|+ =+|.=|-.+++++
T Consensus 204 sR-kPvVkA~W-V~eGTHInAiGADapGKqELD 234 (327)
T TIGR02371 204 SR-KPVVKADW-VEEGTHINAIGADAPGKQELD 234 (327)
T ss_pred CC-CCEEEEEC-CCCCCCEEEECCCCCCCCCCC
T ss_conf 98-96075422-598882551057888831003
No 321
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=89.32 E-value=1.1 Score=24.97 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=54.4
Q ss_pred EEEEECCCHHHHHHHHHHHH--CCCCEEEEEEEC-----CCCHHHCCCHHHH---------------CCCCCCCCCC-CC
Q ss_conf 79998998779999999983--899789999964-----8980204553666---------------0875467545-56
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHN--NPSITLHSIIVR-----SGSPLIGQDVGNF---------------VGISPMGIKF-SD 63 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~--~~~~eLv~~i~~-----~~~~~~g~d~~~~---------------~~~~~~~v~i-~~ 63 (280)
+|||.|-|=+|+.++=.+++ -..+.|+.-=.- .-.+|.-+++|.+ +.+.-....| .+
T Consensus 23 ~VAicGlGGLGS~~AinLAR~GigkLiLvDfDvvepsNLnRQqY~~s~~G~~KteAlke~i~einPy~~ie~~d~ki~E~ 102 (200)
T TIGR02354 23 SVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKVSDVGKKKTEALKENISEINPYVEIEIIDEKIDEE 102 (200)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEECEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 27897016116899999987302202566404323665613257876248621799998786508842123110212766
Q ss_pred CHHHHHCCCCEEEEE-ECCCHHHHHHH-HHHHCCCEEEEEECCCC
Q ss_conf 857852135504763-10102478887-64323721576502223
Q gi|254780279|r 64 NLAMAIQSVDGIIDF-SSPALTLQSLN-ISAQHNIVHIIGTTGFS 106 (280)
Q Consensus 64 dl~~~~~~~DViIDF-T~P~~~~~~~~-~a~~~g~~vViGTTG~~ 106 (280)
+++.+++++|||++. =+|++=.-... ....++-..+|+.+|+-
T Consensus 103 N~~~~fkdaDiv~EAFDna~aKam~~n~vl~~ykdk~li~ASGlA 147 (200)
T TIGR02354 103 NLDKLFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKKLIAASGLA 147 (200)
T ss_pred HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 798784067478871699889999999999767864587602664
No 322
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=89.28 E-value=0.6 Score=26.63 Aligned_cols=134 Identities=15% Similarity=0.146 Sum_probs=78.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCC---CCCCCCCCCCH-HHHHCC--CCEEEEEE
Q ss_conf 3799989987799999999838997899999648980204553666087---54675455685-785213--55047631
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGI---SPMGIKFSDNL-AMAIQS--VDGIIDFS 79 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~---~~~~v~i~~dl-~~~~~~--~DViIDFT 79 (280)
-+|.|+|||=-+|+++-.+.+..+.+++ ++.|+.++ ++++.+.... ...|-...-.+ +.-.+. +|+||..|
T Consensus 122 ~~~li~GAGGAa~a~a~~L~~~t~~~~~-i~NRT~~k--a~~La~~~~~kln~~~G~~~~~~~~~~~l~~G~~DlIINAT 198 (286)
T TIGR00507 122 QRVLIIGAGGAAKAVALELLKATDCNVI-IANRTVEK--AEELAERFQRKLNKKYGEIQAFSLDEVPLHKGKVDLIINAT 198 (286)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEE-EEECCHHH--HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECC
T ss_conf 7799994286789999999860099789-98287789--99999998988534248536521133555578567998546
Q ss_pred CCCHHHHHHHHHHH---CCCEEEEEECCCCHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 01024788876432---372157650222313-58999874035552100001156899999999999861156
Q gi|254780279|r 80 SPALTLQSLNISAQ---HNIVHIIGTTGFSVK-ENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPA 149 (280)
Q Consensus 80 ~P~~~~~~~~~a~~---~g~~vViGTTG~~~e-~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~ 149 (280)
++....+.-+.... ..-+.++.=+-|.+- +---|+.+ ++.. +.++.=|+-+| +.++|..|..|
T Consensus 199 s~G~~~~~~~~~v~~~~~~~~~~v~D~~Y~p~t~Tpfl~~A-k~~g---~~~~~dG~gML---v~QAA~~F~lW 265 (286)
T TIGR00507 199 SAGMSGNIDEPPVPAELLKEGKLVYDLVYNPLTETPFLKEA-KKRG---LTKVIDGLGML---VAQAALSFELW 265 (286)
T ss_pred CCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCHHHHHH-HHCC---CCCCCCCHHHH---HHHHHHHHHHH
T ss_conf 77888898874568534168868995146886557789999-8768---85654530458---99999866661
No 323
>KOG1203 consensus
Probab=89.12 E-value=1.5 Score=23.92 Aligned_cols=35 Identities=23% Similarity=0.573 Sum_probs=25.8
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 8737999899-877999999998389978999996489
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSG 40 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~ 40 (280)
+++.|.|+|+ |+.||.+++.+.+.. +..- +..|+.
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkrg-f~vr-a~VRd~ 113 (411)
T KOG1203 78 KPTTVLVVGATGKVGRRIVKILLKRG-FSVR-ALVRDE 113 (411)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCC-CEEE-EECCCH
T ss_conf 88749995588736399999999779-7023-421573
No 324
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.11 E-value=1.9 Score=23.18 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=59.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH-CCCCEEEEEECCCHH
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852-135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI-QSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~-~~~DViIDFT~P~~~ 84 (280)
-||+|-|+|+.|+.+++.+.+ .+..++.. |-+. ....+..+.. +....+. ++++ .+|||++=+......
T Consensus 29 k~VaIqG~GnVG~~~A~~l~~-~Gakvvv~-d~~~--~~~~~~~~~~-----~~~~~~~-~~~~~~~~DIl~PcA~~~~i 98 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLE-EGAKLIVA-DINE--EAVARAAELF-----GATVVAP-EEIYSVDADVFAPCALGGVI 98 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEE-ECCH--HHHHHHHHCC-----CCEEECC-HHHHCCCCCEEEECCCCCCC
T ss_conf 999998987999999999996-79979998-2688--9999998568-----9889373-32322777688651411546
Q ss_pred HHHHHHHHHCCCEEEEEEC-C-CCHHHH-HHHHHHHCCCCCEECCCHHH
Q ss_conf 7888764323721576502-2-231358-99987403555210000115
Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTT-G-FSVKEN-EVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 85 ~~~~~~a~~~g~~vViGTT-G-~~~e~~-~~l~~~s~~~~il~apN~Si 130 (280)
.. +.+.+-+..+|++-- | ++++.. +.|.+ ..|++.|-|-.
T Consensus 99 ~~--~~a~~i~ak~I~e~AN~p~t~~~~~~~L~~----rgI~~iPD~la 141 (200)
T cd01075 99 ND--DTIPQLKAKAIAGAANNQLADPRHGQMLHE----RGILYAPDYVV 141 (200)
T ss_pred CH--HHHHHCCCCEEEECCCCCCCCHHHHHHHHH----CCEEEECHHHE
T ss_conf 89--999870896997356799999789999985----99299682442
No 325
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.97 E-value=2 Score=23.11 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9988737999899-8779999999983899789999
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSI 35 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~ 35 (280)
|.-.| .|+|+|. |-.|+-..+...+.-++++++.
T Consensus 1 ~~~~p-iV~iiG~~~~~G~w~a~flr~~~~~~vig~ 35 (373)
T PRK08818 1 MIAQP-VVGIVGIAGAYGRWLAQFLRTRMQLEVIGY 35 (373)
T ss_pred CCCCC-EEEEEECCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 98786-389962663265899999874366178854
No 326
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=88.95 E-value=1.4 Score=24.03 Aligned_cols=180 Identities=17% Similarity=0.205 Sum_probs=97.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH-
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763101024-
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT- 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~- 84 (280)
-+|+|+|||--|++-+. -.++.++.++-++ |++++.. +.. ...|..+. +.+++.+.+|||.-. .|+..
T Consensus 18 k~iaViGYGsQG~AhAl-NLrDSG~~V~vgl-r~gs~S~--~kA-----~~dGf~v~-~~~eA~~~aDii~~L-~PD~~q 86 (336)
T PRK05479 18 KKVAIIGYGSQGHAHAL-NLRDSGVDVVVGL-REGSKSW--KKA-----EADGFEVL-TVAEAAKWADVIMIL-LPDELQ 86 (336)
T ss_pred CEEEEECCCCHHHHHHH-HHHHCCCCEEEEE-CCCCCCH--HHH-----HHCCCEEC-CHHHHHHHCCEEEEE-CCHHHH
T ss_conf 97999752707689885-5374499779997-9998039--999-----98799436-799999746866542-875778
Q ss_pred ----HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ----78887643237215765022231358999874035552-1000011568999999999998611566600899998
Q gi|254780279|r 85 ----LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI-VKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM 159 (280)
Q Consensus 85 ----~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i-l~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~ 159 (280)
.+.++-.++.|..+.. +-||+=. ...++- .+.+-| +.||- .-|-.+-.. |+. +...- ..+-.
T Consensus 87 ~~vy~~~I~p~lk~G~~L~F-aHGFnIh-y~~I~p-p~~vDVimVAPK-gpG~~VR~~-------y~~-G~GvP-~liAV 153 (336)
T PRK05479 87 AEVYKEEIEPNLKEGAALAF-AHGFNIH-FGQIVP-PADVDVIMVAPK-GPGHLVRRE-------YVE-GGGVP-CLIAV 153 (336)
T ss_pred HHHHHHHHHHHCCCCCEEEE-ECCCHHC-CCEEEE-CCCCCEEEECCC-CCCHHHHHH-------HHC-CCCEE-EEEEE
T ss_conf 99999999854589976886-1443000-560444-589767998889-997689999-------863-89804-89999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECC
Q ss_conf 641678998678999999998532887642211123576765433456501375288205799998189
Q gi|254780279|r 160 HHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGE 228 (280)
Q Consensus 160 HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~ 228 (280)
|. | +||.|+.+|-..+.+.+-..-..... .|.---.-+.+|+|.|++++-
T Consensus 154 ~q----D-~sG~A~~~alaya~~iG~~raGvieT--------------TF~eEtetDLfGEQ~VLcGG~ 203 (336)
T PRK05479 154 HQ----D-ASGNAKDLALAYAKGIGGTRAGVIET--------------TFKEETETDLFGEQAVLCGGL 203 (336)
T ss_pred EE----C-CCHHHHHHHHHHHHHCCCCCCCEEEC--------------CHHHHHHHHHHHHHHHHHCHH
T ss_conf 86----8-87359999999998738776655742--------------559998876244578862439
No 327
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.76 E-value=1.8 Score=23.30 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=57.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 7999899877999999998389978999996489802045536660875467545--56857852135504763101024
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
++.|+|.|+-|..+++.+. ..+.++. ++|.+..+..-..+.. ...++.+ .....+.+..+|.|| .+|..-
T Consensus 9 ~~LV~G~G~sG~s~a~~L~-~~G~~V~-~~D~~~~~~~~~~~~~----~~~~i~~~~g~~~~~~~~~~d~vv--~SPgI~ 80 (448)
T PRK03803 9 LRIVVGLGKSGMSLVRFLA-RQGYQFA-VTDTRENPPELATLRR----DYPQVEVRCGELDAEFLCQAEEII--VSPGLA 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHH-HCCCEEE-EEECCCCCHHHHHHHH----HCCCCEEEECCCCHHHHCCCCEEE--ECCCCC
T ss_conf 5899998999999999999-7889599-9918999167999997----479977997888977807899999--899729
Q ss_pred --HHHHHHHHHCCCEE-----------------EEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHH
Q ss_conf --78887643237215-----------------765022231358999874035--55210000115689999
Q gi|254780279|r 85 --LQSLNISAQHNIVH-----------------IIGTTGFSVKENEVISSFARN--APIVKSSNMSLGINFLG 136 (280)
Q Consensus 85 --~~~~~~a~~~g~~v-----------------ViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~ 136 (280)
.+.++.|.+.|+|+ |.||-|=|.- -..+...-+. ..+..+.|. |..++.
T Consensus 81 ~~~p~~~~a~~~~i~i~~e~el~~~~~~~~~IaVTGTnGKTTT-tsli~~iL~~~g~~~~~gGNi--G~p~~~ 150 (448)
T PRK03803 81 LATPALQAAAAAGIKISGDIELFARAAKAPIVAITGSNAKSTV-TTLVGEMAKAAGKRVAVGGNL--GTPALD 150 (448)
T ss_pred CCCHHHHHHHHCCCCEECHHHHHHHHCCCCEEEECCCCCHHHH-HHHHHHHHHHCCCCEEEEEEC--CCHHHH
T ss_conf 9999999999859968319999862178988998589983889-999999998659837994032--761366
No 328
>PRK10537 voltage-gated potassium channel; Provisional
Probab=88.57 E-value=2.1 Score=22.93 Aligned_cols=112 Identities=8% Similarity=0.081 Sum_probs=50.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH-----CCCCEEEEEECC
Q ss_conf 799989987799999999838997899999648980204553666087546754556857852-----135504763101
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI-----QSVDGIIDFSSP 81 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~-----~~~DViIDFT~P 81 (280)
.+.|+|+|++|+.+++.+.+... ..+-+...+......++..... |-+.. ++.+ +++..+|-.+.-
T Consensus 206 H~IICGyG~~g~~v~~eL~~~g~-~vVVI~~~~~~~~~~~~~~~I~-----GDaTd---d~~L~kAgI~~Ak~VI~~~~~ 276 (356)
T PRK10537 206 HFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGEEHRLPDDADLIP-----GDSSD---SAVLKKAGAARARAILALRDN 276 (356)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCHHHCCCCCCCEEE-----CCCCC---HHHHHHCCCHHHCEEEECCCC
T ss_conf 68998988379999999997299-9799945804430205688795-----08997---899987593450798880787
Q ss_pred CHHHH-HHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 02478-88764323--7215765022231358999874035552100001156
Q gi|254780279|r 82 ALTLQ-SLNISAQH--NIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 82 ~~~~~-~~~~a~~~--g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280)
++..- .+-.+.+. ++++|.-. -+++..++++++--. .+.+|--.=|
T Consensus 277 Da~NvfivLTAR~LnP~v~IVA~a--~~~en~~KlrrAGAD--~VISP~~lGg 325 (356)
T PRK10537 277 DADNAFVVLAAKEMSSDVKTVAAV--NDSKNLEKIKRVHPD--MIFSPQLLGS 325 (356)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHHCCC--EEECHHHHHH
T ss_conf 778999998499868997699996--767579999862899--9986888789
No 329
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.47 E-value=2.1 Score=22.89 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=50.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC----CCCCCCCCHHHHHC----------CC
Q ss_conf 79998998779999999983899789999964898020455366608754----67545568578521----------35
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP----MGIKFSDNLAMAIQ----------SV 72 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~----~~v~i~~dl~~~~~----------~~ 72 (280)
+|+|.|+|-+|...+..... -+.++++ ++.++.+. +.....|... .... ..++.+.+. ..
T Consensus 169 ~V~V~G~G~iGl~a~~~ak~-~Ga~Vi~-vd~~~~rl---e~a~~~Ga~~~i~~~~~~-~~~~~~~~~~~~~~~G~~~~~ 242 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKA-MGAAVVA-IDIDPEKL---EMMKGFGADLTLNPKDKS-AREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEE-EECCHHHH---HHHHHCCCCEEECCCCCC-HHHHHHHHHHHCCCCCCCCCC
T ss_conf 89998974899999999998-5997999-94999999---999964998998787677-899999997541456756556
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCE
Q ss_conf 50476310-1024788876432372157650222313589998740355521
Q gi|254780279|r 73 DGIIDFSS-PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIV 123 (280)
Q Consensus 73 DViIDFT~-P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il 123 (280)
|+++|++- +......++.+...|.-+++|...- +.++....-..++..++
T Consensus 243 ~~v~e~~G~~~~~~~a~~~~~~gG~iv~vG~~~~-~~~~~~~~l~~~~~~i~ 293 (349)
T TIGR03201 243 WKIFECSGSKPGQESALSLLSHGGTLVVVGYTMA-KTEYRLSNLMAFHARAL 293 (349)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCHHHHHHCCEEEE
T ss_conf 3699824888999999997358979999750599-87554899873667999
No 330
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=88.44 E-value=1.5 Score=23.90 Aligned_cols=32 Identities=34% Similarity=0.637 Sum_probs=26.1
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 7999899-87799999999838997899999648
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRS 39 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~ 39 (280)
.|+|.|| |-+|+++++...+ .+..+++....+
T Consensus 182 TV~VTGASG~LG~aL~k~l~~-~GAKVIalTs~~ 214 (410)
T PRK07424 182 TVAVTGASGTLGQALLKELHQ-QGAKVIALTSNS 214 (410)
T ss_pred EEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCC
T ss_conf 799954773778999999997-799899993589
No 331
>COG2403 Predicted GTPase [General function prediction only]
Probab=88.42 E-value=2.1 Score=22.87 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=56.5
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCC-HHHHCCC-CCCCCCCC-----CCHHHHHC--
Q ss_conf 9988737999899-8779999999983899789999964898020455-3666087-54675455-----68578521--
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQD-VGNFVGI-SPMGIKFS-----DNLAMAIQ-- 70 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d-~~~~~~~-~~~~v~i~-----~dl~~~~~-- 70 (280)
|..++.||.+.|+ ||==...-.....++.+++++.....-..-.++- .++..+. .+.|+++. ++++..+.
T Consensus 2 ~m~a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire~ 81 (449)
T COG2403 2 AMKARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIREK 81 (449)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 87775269999506756622467860687524788899883277665389970113233783304664689999999870
Q ss_pred CCC-EEEEEE--CCCHHHHHHHHHHHCCC
Q ss_conf 355-047631--01024788876432372
Q gi|254780279|r 71 SVD-GIIDFS--SPALTLQSLNISAQHNI 96 (280)
Q Consensus 71 ~~D-ViIDFT--~P~~~~~~~~~a~~~g~ 96 (280)
.+| +|+|+| +|+-.+.++...+..|.
T Consensus 82 ~VD~~VlaySDvs~e~v~~IaS~vLs~GA 110 (449)
T COG2403 82 DVDIVVLAYSDVSYEHVFRIASRVLSAGA 110 (449)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 76616877012898998789999974785
No 332
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=88.37 E-value=1.7 Score=23.59 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=56.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CCCHH-
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047631-01024-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SPALT- 84 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P~~~- 84 (280)
++.|+|||+.||-+++..... +..+ -+++.++-+.+.. .-.|..+ ..+++++..+|++|-.| .+...
T Consensus 25 ~vvV~GYG~~GkGvA~~~rg~-Ga~V-~V~EvDPi~aleA--------~mdGf~V-~~~~ea~~~aDi~VTaTG~~~vi~ 93 (162)
T pfam00670 25 VAVVCGYGDVGKGCAASLKGQ-GARV-IVTEIDPICALQA--------AMEGFQV-VTLEEVVKKADIFVTTTGNKDIIT 93 (162)
T ss_pred EEEEECCCCCCHHHHHHHHCC-CCEE-EEEECCCHHHHHH--------HHCCCCC-CCHHHHHHCCCEEEECCCCCCCCC
T ss_conf 899967876677799986229-9989-9994793069999--------8649954-788898604999999248977473
Q ss_pred HHHHHHHHHCCCEEEEEECCCCHHH--HHHHHHHHC
Q ss_conf 7888764323721576502223135--899987403
Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTGFSVKE--NEVISSFAR 118 (280)
Q Consensus 85 ~~~~~~a~~~g~~vViGTTG~~~e~--~~~l~~~s~ 118 (280)
.++++... -..|++..|..+.+ ++.|++.+.
T Consensus 94 ~eh~~~mK---dgaIlaN~GHfd~EIdv~~L~~~~~ 126 (162)
T pfam00670 94 GEHMAKMK---NDAIVCNIGHFDNEIDVAWLNTNGK 126 (162)
T ss_pred HHHHHHHC---CCEEEECCCCCCCEEEHHHHHCCCC
T ss_conf 99999844---8869987775652272888857575
No 333
>KOG2733 consensus
Probab=88.37 E-value=0.97 Score=25.22 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=85.5
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHH---CCCCEEEEEEECCCCHHHCCCHH---HHCCC--CCCCCCCCC-----CHH
Q ss_conf 9988737999899-8779999999983---89978999996489802045536---66087--546754556-----857
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHN---NPSITLHSIIVRSGSPLIGQDVG---NFVGI--SPMGIKFSD-----NLA 66 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~---~~~~eLv~~i~~~~~~~~g~d~~---~~~~~--~~~~v~i~~-----dl~ 66 (280)
|.-.+--+.|.|| |-.|+-+++.+.+ .++..+. +.-|+ .+.+..-+- +..+. ....+.+.| ++.
T Consensus 1 M~~~~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn-~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ 78 (423)
T KOG2733 1 MAAIRYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRN-EKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLD 78 (423)
T ss_pred CCCCEEEEEEECCCCCCCEEEHHHHHHHHCCCCCEEE-EECCC-HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
T ss_conf 9872335999815666530248988643024675478-73278-889999999986324888665438994378878999
Q ss_pred HHHCCCCEEEEEECCCHH--HHHHHHHHHCCCEEE--EEECCCCHHHHHHHHHHHCCCCCEEC-------CCHHHHHHHH
Q ss_conf 852135504763101024--788876432372157--65022231358999874035552100-------0011568999
Q gi|254780279|r 67 MAIQSVDGIIDFSSPALT--LQSLNISAQHNIVHI--IGTTGFSVKENEVISSFARNAPIVKS-------SNMSLGINFL 135 (280)
Q Consensus 67 ~~~~~~DViIDFT~P~~~--~~~~~~a~~~g~~vV--iGTTG~~~e~~~~l~~~s~~~~il~a-------pN~SiGv~ll 135 (280)
+..+.+-|||.+--|--. ...++.|+++|.+.| +|---|-+.-..+-.+.|++.++.+. --+-+|+.++
T Consensus 79 emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~f~ 158 (423)
T KOG2733 79 EMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGVMFL 158 (423)
T ss_pred HHHHHHEEEEECCCCCEECCCHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 99864178775155631247189999987598533147887999999887877777557399950466777751001443
Q ss_pred HHHHHHHHHHHCCCCCCHHH-HHHHHHHCCCCCCCHHHH
Q ss_conf 99999999861156660089-999864167899867899
Q gi|254780279|r 136 GFLVETAAEYLLPAKDWDFE-ILEMHHRRKLDSPSGTAL 173 (280)
Q Consensus 136 ~~l~~~~a~~l~~~~~~die-I~E~HH~~K~DaPSGTA~ 173 (280)
.+ .|+. .-..|| .+..|-+ -|||+++
T Consensus 159 ~k-------~fdg-~ln~VEsfl~Lh~~----gp~G~sl 185 (423)
T KOG2733 159 RK-------NFDG-VLNHVESFLQLHSK----GPSGYSL 185 (423)
T ss_pred HH-------HCCC-CHHHHHHHHHHHCC----CCCCCCC
T ss_conf 63-------3256-48889989855156----7765532
No 334
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I; InterPro: IPR011913 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (IPR011914 from INTERPRO) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=88.34 E-value=0.56 Score=26.83 Aligned_cols=114 Identities=16% Similarity=0.282 Sum_probs=63.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCE-EEEEEE-------------CC-CCHHHCCCHHHHCCCC-CCCCCCCCCHHHHHCC
Q ss_conf 999899877999999998389978-999996-------------48-9802045536660875-4675455685785213
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSIT-LHSIIV-------------RS-GSPLIGQDVGNFVGIS-PMGIKFSDNLAMAIQS 71 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~e-Lv~~i~-------------~~-~~~~~g~d~~~~~~~~-~~~v~i~~dl~~~~~~ 71 (280)
+||+|-=.-|+.+.+.+.+. +.. -...+. .. +++.+--|..+..... ...-.+.+.+.+.++.
T Consensus 67 ~GvVG~D~~g~~L~~ll~~~-g~~~~~~l~~d~~rpT~~K~Rv~a~~~QQllR~D~E~~~~~~~~~~~~L~~~~~~~l~~ 145 (321)
T TIGR02198 67 VGVVGDDEAGKALEALLKEE-GIDDTSGLIRDKSRPTTTKTRVLARANQQLLRVDFEERKPINAEEEARLLAAIKEQLAS 145 (321)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCCCCCEEEECCCCCEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 97733683899999999745-86433002776898944888886046505899741027768977899999999997232
Q ss_pred CCEEE--EEE----CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC-EECCCHHHH
Q ss_conf 55047--631----0102478887643237215765022231358999874035552-100001156
Q gi|254780279|r 72 VDGII--DFS----SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI-VKSSNMSLG 131 (280)
Q Consensus 72 ~DViI--DFT----~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i-l~apN~SiG 131 (280)
+|+|| |+- .|..+.+.+.+|.++|+|+++ +++- +++|++.+. |+-||.+==
T Consensus 146 ~d~VvLSDYaKGvLt~~v~~~~I~~Ar~~~~pVlV-----DPKg----~df~~Y~GAtl~TPN~~E~ 203 (321)
T TIGR02198 146 ADAVVLSDYAKGVLTPSVVQEVIAAAREAGKPVLV-----DPKG----KDFSRYRGATLITPNRKEA 203 (321)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-----ECCC----CCHHHHCCCCCCCCCHHHH
T ss_conf 87899986687635857899999999966891998-----0787----6234514664236687999
No 335
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=88.24 E-value=2.2 Score=22.79 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=24.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 737999899877999999998389978999996489
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG 40 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~ 40 (280)
-.||+|+|.|..|-..+-.++ +.+++++ ++|.+.
T Consensus 3 ~kkI~ViGlGYVGL~~a~~lA-~~G~~Vi-g~D~d~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFA-SRQKQVI-GVDINQ 36 (415)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCH
T ss_conf 887999886877899999999-6889489-998999
No 336
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=88.17 E-value=1.7 Score=23.45 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=82.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH-
Q ss_conf 3799989987799999999838997899999648980204553666087546754556857852135504763101024-
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT- 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~- 84 (280)
-+|+|+|||--|++-+. -.++.+++++-++- ++++.. +.. ...|..+ -+.+++.+.+|+|.=. .|+..
T Consensus 5 k~iaViGYGsQG~AhAl-NLrDSG~~V~vglr-~~s~S~--~kA-----~~dGf~v-~~~~eA~~~aDiim~L-~PD~~q 73 (165)
T pfam07991 5 KKIAVIGYGSQGHAHAL-NLRDSGVNVIVGLR-PGSKSW--EKA-----KKDGFEV-YTVAEAVKKADVVMIL-LPDEVQ 73 (165)
T ss_pred CEEEEEEECCHHHHHHH-HHHHCCCCEEEEEC-CCCHHH--HHH-----HHCCCCC-CCHHHHHHHCCEEEEE-CCCHHH
T ss_conf 98999934616488872-30534997899978-998679--999-----9789700-4899998657899983-797778
Q ss_pred H----HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 7----8887643237215765022231358999874035552-1000011568999999999998611566600899998
Q gi|254780279|r 85 L----QSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI-VKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM 159 (280)
Q Consensus 85 ~----~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i-l~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~ 159 (280)
. +.++-.++.|..+.. +-||+-.. ..++- -+.+-| +.||- .-|-.+-.. |.. +...- ..+-.
T Consensus 74 ~~iy~~~I~p~lk~G~~L~F-aHGFnI~y-~~I~p-p~dvdVimVAPK-gPG~~VR~~-------y~~-G~GvP-~liAV 140 (165)
T pfam07991 74 AEVYEKEIAPNLKEGAALAF-AHGFNIHF-GQIKP-PKDVDVIMVAPK-GPGHLVRRE-------YEE-GGGVP-ALIAV 140 (165)
T ss_pred HHHHHHHHHHHCCCCCEEEE-CCCCEEEE-CCEEE-CCCCCEEEECCC-CCCHHHHHH-------HHC-CCCEE-EEEEE
T ss_conf 99999989865789977997-15757774-10764-699868998889-997479998-------655-99836-89999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6416789986789999999985328
Q gi|254780279|r 160 HHRRKLDSPSGTALLLGEAIANGRK 184 (280)
Q Consensus 160 HH~~K~DaPSGTA~~la~~i~~~~~ 184 (280)
|. | +||.|..++-..+.+.+
T Consensus 141 ~Q----D-~sG~A~~~alayA~aiG 160 (165)
T pfam07991 141 HQ----D-ASGKAKDLALAYAKGIG 160 (165)
T ss_pred EE----C-CCCCHHHHHHHHHHHCC
T ss_conf 98----8-99719999999998717
No 337
>pfam07994 NAD_binding_5 Myo-inositol-1-phosphate synthase. This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate catalyses the conversion of glucose-6- phosphate to inositol-1-phosphate, which is then dephosphorylated to inositol. Inositol phosphates play an important role in signal transduction.
Probab=88.17 E-value=2.2 Score=22.76 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=26.5
Q ss_pred EEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHC-CCCCCCCHHHHH
Q ss_conf 9999818995899999972737679999999999834-899836888982
Q gi|254780279|r 221 HSVVIAGEGESITLSHSAYDRRIFARGSLTAALWAKS-QIPGLYSMRDVL 269 (280)
Q Consensus 221 H~V~f~~~~E~i~i~H~a~~R~~Fa~Gal~aa~~l~~-~~~G~y~m~dvL 269 (280)
|-..|.+---+|.++-...|---=|+=++.+++...- +..|+++...+|
T Consensus 313 ~~~gflG~~m~i~~~~~~~DS~lAAplviDlvrl~~la~r~g~~Gv~~~l 362 (389)
T pfam07994 313 ESEIFLGGPNTIELHNTCEDSLLAAPLIIDLVRLAKLALRRGIGGVLSVL 362 (389)
T ss_pred EEEEECCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 85320797679999989844156389999999999999856988621366
No 338
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=88.17 E-value=1.8 Score=23.29 Aligned_cols=105 Identities=10% Similarity=0.203 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCC-CEEEEE-ECCC-----HHHH
Q ss_conf 87799999999838997899999648980204553666087546754556857852135-504763-1010-----2478
Q gi|254780279|r 14 GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSV-DGIIDF-SSPA-----LTLQ 86 (280)
Q Consensus 14 GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~-DViIDF-T~P~-----~~~~ 86 (280)
..-|+.....+.-.+.+.+++++|+... +.+.+...+....++++.++.+++++.- ++.|=- .+|. .-.+
T Consensus 12 ~~~~kta~Gllr~~~~~~iv~vvD~~~~---~~~~~~~l~~~~~~vpii~s~~~~~e~~~e~liIgia~~gG~~~~~~~~ 88 (339)
T COG3367 12 ETNGKTAVGLLRYSEKYAIVAVVDRREA---GDDTPRELGGDKADVPIISSVEEALEGLAEALIIGIAPPGGVLPESWRE 88 (339)
T ss_pred CCCCHHHHHHHCCCCCCEEEEEEEEECC---CCCCHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCHHHHH
T ss_conf 5663133344124310003557743001---4556787478668971005489997347644899961588857578899
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 887643237215765022231358999874035552
Q gi|254780279|r 87 SLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI 122 (280)
Q Consensus 87 ~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i 122 (280)
.+..|++.|.++|.|=--| =++...+.++++..++
T Consensus 89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~ 123 (339)
T COG3367 89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGV 123 (339)
T ss_pred HHHHHHHHCCHHHHHHHHH-HHCCHHHHHHHHHCCC
T ss_conf 9999998373166555777-6118689999987197
No 339
>PRK10433 putative RNA methyltransferase; Provisional
Probab=88.15 E-value=2.2 Score=22.75 Aligned_cols=125 Identities=14% Similarity=0.213 Sum_probs=69.2
Q ss_pred CEEEEEEC--C-CHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHCCCHHHH-CCCCC--CCCCCCCCHHHHHCCCCEEE
Q ss_conf 73799989--9-87799999999838--997899999648980204553666-08754--67545568578521355047
Q gi|254780279|r 5 PMRISVLG--G-GRMGQALIKEIHNN--PSITLHSIIVRSGSPLIGQDVGNF-VGISP--MGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 5 ~IkV~I~G--a-GkMG~~ii~~i~~~--~~~eLv~~i~~~~~~~~g~d~~~~-~~~~~--~~v~i~~dl~~~~~~~DViI 76 (280)
+|+|.++. . |+.|.. +++..+. .++.||.--+ ....+.... .+..+ ....+.+++++++.+++.+|
T Consensus 2 ~i~iVLvep~~p~NIGa~-ARaMkN~G~~~L~LV~P~~-----~~~~~a~~~A~gA~diL~~a~v~~sL~eAl~d~~~vv 75 (228)
T PRK10433 2 RLTIILVAPARAENIGAA-ARAMKTMGFSELRIVDSQA-----HLEPAARWVAHGSGDILDNIEVFDTLAEALHDVDFTV 75 (228)
T ss_pred EEEEEEECCCCCCHHHHH-HHHHHCCCCCCEEEECCCC-----CCCHHHHHHHCCHHHHHHHCCCCCCHHHHHHCCCEEE
T ss_conf 699999679997519999-9999728998169979999-----9988899983473999973733377999985489899
Q ss_pred EEEC-CCH------H-HHHHHHHH-----HCCCEEEEE--ECCCCHHHHHHHHHHHCCCCC---EECCCHHHHHHHHH
Q ss_conf 6310-102------4-78887643-----237215765--022231358999874035552---10000115689999
Q gi|254780279|r 77 DFSS-PAL------T-LQSLNISA-----QHNIVHIIG--TTGFSVKENEVISSFARNAPI---VKSSNMSLGINFLG 136 (280)
Q Consensus 77 DFT~-P~~------~-~~~~~~a~-----~~g~~vViG--TTG~~~e~~~~l~~~s~~~~i---l~apN~SiGv~ll~ 136 (280)
-+|. +.. . .+..+... ..++.+|.| .+|++.+++..-..+. .||. .-+=|.|--|.++.
T Consensus 76 gtTaR~r~~~~~~~~p~~~~~~~~~~~~~~~~valvFG~E~~GLsneEl~~C~~~~-~IPt~~~y~SLNLaqAV~i~~ 152 (228)
T PRK10433 76 ATTARSRAKYHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLT-GVPMAADYPSLNLGQAVMVYC 152 (228)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEE-EEECCCCCCCCCHHHHHHHHH
T ss_conf 96456466888868999999999973234784799988866898989998679789-855899985321999999999
No 340
>PRK09422 alcohol dehydrogenase; Provisional
Probab=88.02 E-value=1.5 Score=23.87 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=16.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 79998998779999999983899789999
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSI 35 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~ 35 (280)
+|.|.|+|-+|...++.....-..++++.
T Consensus 165 ~VlV~GaGgvG~~aiq~ak~~~g~~Vi~~ 193 (338)
T PRK09422 165 WIAIYGAGGLGNLALQYAKNVFNAKVIAV 193 (338)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 89996886899999999998089869999
No 341
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=87.82 E-value=2.3 Score=22.62 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=50.5
Q ss_pred CE-EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC-CHHHHHCCCCEEEEEECCC
Q ss_conf 73-799989987799999999838997899999648980204553666087546754556-8578521355047631010
Q gi|254780279|r 5 PM-RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD-NLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 5 ~I-kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~-dl~~~~~~~DViIDFT~P~ 82 (280)
+| ||-++|.|..|-.-+..+....+.++. +.|...++... .....|+.+.. .-.+.++++|+|| -+|.
T Consensus 7 ~~k~ih~iGigG~GmsalA~~l~~~G~~V~-gsD~~~~~~~~-------~L~~~Gi~v~~g~~~~~l~~~d~vV--~Sp~ 76 (459)
T PRK00421 7 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDLKESAVTQ-------RLLELGAIIFIGHDAENIKGADVVV--VSSA 76 (459)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHCCCEEE-EECCCCCHHHH-------HHHHCCCEEECCCCHHHCCCCCEEE--ECCC
T ss_conf 678899998668889999999996899399-98898997899-------9997879997798979879999999--8998
Q ss_pred HH--HHHHHHHHHCCCEEE
Q ss_conf 24--788876432372157
Q gi|254780279|r 83 LT--LQSLNISAQHNIVHI 99 (280)
Q Consensus 83 ~~--~~~~~~a~~~g~~vV 99 (280)
.- .+.+++|.+.|+|++
T Consensus 77 I~~~~p~~~~a~~~gi~v~ 95 (459)
T PRK00421 77 IKPDNPELVAARELGIPVV 95 (459)
T ss_pred CCCCCHHHHHHHHCCCCEE
T ss_conf 5998999999998799798
No 342
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase; InterPro: IPR011534 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents aspartate-semialdehyde dehydrogenase from a variety of bacterial species.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0050661 NADP binding, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=87.73 E-value=0.4 Score=27.87 Aligned_cols=124 Identities=16% Similarity=0.216 Sum_probs=83.8
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
.+|+++|- |-.|..+.+...+..|+..+..+--..+ ..|++.+.+.........-..|+ ++++..|++|-+---+.+
T Consensus 1 ~~vGl~GWrGmvGsvl~~rm~ee~df~~i~~vffsts-~~G~~~P~~~~~~~~~l~~a~~~-~~lk~~d~i~tCqGG~yt 78 (367)
T TIGR01745 1 KKVGLVGWRGMVGSVLLQRMQEEKDFDAIKPVFFSTS-QLGQKAPSFAKTSANILEDAYDI-DALKELDIIITCQGGDYT 78 (367)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHH-HHHHHCCEEEEECCCCCH
T ss_conf 9113453203689999998652333444445422013-31554653000015677656557-877425767871587403
Q ss_pred HHHHHHHHHCCC----------------EEEEEECCCCHHHHHHHHHHH-CCCCCEECCCHHHHHHHH
Q ss_conf 788876432372----------------157650222313589998740-355521000011568999
Q gi|254780279|r 85 LQSLNISAQHNI----------------VHIIGTTGFSVKENEVISSFA-RNAPIVKSSNMSLGINFL 135 (280)
Q Consensus 85 ~~~~~~a~~~g~----------------~vViGTTG~~~e~~~~l~~~s-~~~~il~apN~SiGv~ll 135 (280)
.+......+.|= .+|+ +++-..+.+++.- +.+.-+...|-.+.+-+|
T Consensus 79 ~eiyP~lr~~GW~GyWidaas~lrm~~d~~i~----ldPvn~~~i~d~~~~G~~~f~GGnCt~s~~lm 142 (367)
T TIGR01745 79 KEIYPKLRKAGWKGYWIDAASSLRMKDDAVII----LDPVNLDVIKDAVNKGIRTFVGGNCTVSLLLM 142 (367)
T ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCCCEEE----ECCHHHHHHHHHHHHCHHHHCCCHHHHHHHHH
T ss_conf 56317887266770353001000003661699----75200688998885022442161489899988
No 343
>KOG1430 consensus
Probab=87.70 E-value=2.4 Score=22.57 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=28.7
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 737999899-8779999999983899789999964898
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGS 41 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~ 41 (280)
+-.+.|+|. |..|+.+++.+.+.....-+-++|....
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~ 41 (361)
T KOG1430 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPT 41 (361)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 77799989833789999999984566617999536775
No 344
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=87.59 E-value=1.2 Score=24.54 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=24.4
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 37999899-8779999999983899789999964
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVR 38 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~ 38 (280)
|||.|.|+ |=.|+.+++.+.+...-.++ .+|.
T Consensus 1 MkILVTGg~GFIGs~l~~~Ll~~~~~~v~-~vd~ 33 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVV-NVDK 33 (352)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEE-EEEC
T ss_conf 97999751008999999999977998899-9847
No 345
>KOG2017 consensus
Probab=87.25 E-value=0.45 Score=27.51 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=61.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCC----HHHHCCCCC--C------CCC
Q ss_conf 379998998779999999983899789999964898-------------020455----366608754--6------754
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQD----VGNFVGISP--M------GIK 60 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d----~~~~~~~~~--~------~v~ 60 (280)
-.|.|+|+|-+|--.+..+.. -+.--.|++|.+.- ...|+. +..+...-+ . ...
T Consensus 67 s~VLVVGaGGLGcPa~~YLaa-aGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L 145 (427)
T KOG2017 67 SSVLVVGAGGLGCPAAQYLAA-AGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFL 145 (427)
T ss_pred CCEEEECCCCCCCHHHHHHHH-CCCCEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHC
T ss_conf 637998168778878999987-3778130310543230007888762165410678999999999609972564103323
Q ss_pred CCCCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHH
Q ss_conf 5568578521355047631-010247888764323721576502-2231358
Q gi|254780279|r 61 FSDNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTT-GFSVKEN 110 (280)
Q Consensus 61 i~~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTT-G~~~e~~ 110 (280)
...+...+++..|||.|+| +|-.-+-.-..|.-.|+|+|+|+- +| +-|+
T Consensus 146 ~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~-EGQL 196 (427)
T KOG2017 146 SSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRW-EGQL 196 (427)
T ss_pred CCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CCEE
T ss_conf 62017777504646887578854001156699871986000210041-4525
No 346
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=87.25 E-value=1.9 Score=23.20 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=59.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HCCCHHHHCCCCCCCC-CCCCCHHHHHC-CCCEEEEEE-CCC
Q ss_conf 7999899877999999998389978999996489802-0455366608754675-45568578521-355047631-010
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-IGQDVGNFVGISPMGI-KFSDNLAMAIQ-SVDGIIDFS-SPA 82 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-~g~d~~~~~~~~~~~v-~i~~dl~~~~~-~~DViIDFT-~P~ 82 (280)
.|+|+|.|-.|-+.+....... ...+-++|..+.+. ..+.+|.-....+.+. .+..-+.++-. -+|..+|.+ +++
T Consensus 188 tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~ 266 (366)
T COG1062 188 TVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVE 266 (366)
T ss_pred EEEEEECCHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCHH
T ss_conf 4899904276699999898748-854999937778999998639824655400254899999862788778999259989
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 247888764323721576502223135
Q gi|254780279|r 83 LTLQSLNISAQHNIVHIIGTTGFSVKE 109 (280)
Q Consensus 83 ~~~~~~~~a~~~g~~vViGTTG~~~e~ 109 (280)
.....++.+-+.|.-+++|--+-..+.
T Consensus 267 ~~~~al~~~~~~G~~v~iGv~~~~~~i 293 (366)
T COG1062 267 VMRQALEATHRGGTSVIIGVAGAGQEI 293 (366)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCEE
T ss_conf 999999987437818999527987542
No 347
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.24 E-value=1.4 Score=24.19 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=27.7
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 37999899-8779999999983899789999964898
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGS 41 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~ 41 (280)
.+|.+.|+ |=||+.++.......+..+.+-+ |.++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLV-RA~s 36 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLV-RAQS 36 (382)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEE-ECCC
T ss_conf 91899457027699999999716887289998-2277
No 348
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=87.19 E-value=2.3 Score=22.67 Aligned_cols=81 Identities=7% Similarity=0.098 Sum_probs=52.2
Q ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC-CCCHHHHH--CCCCEEEEEECCCHHHH
Q ss_conf 9899877999999998389978999996489802045536660875467545-56857852--13550476310102478
Q gi|254780279|r 10 VLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF-SDNLAMAI--QSVDGIIDFSSPALTLQ 86 (280)
Q Consensus 10 I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i-~~dl~~~~--~~~DViIDFT~P~~~~~ 86 (280)
|+|+|-.|+.++..+.++.++++++.+|.+...... ...+.++ ..+....+ ++.+++|-...|..-.+
T Consensus 1 IiGaGG~ak~v~d~i~~~~~~~iigf~DD~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~~~~IaIG~~~~R~k 71 (197)
T cd03360 1 IIGAGGHARVVADILEADSGYEVVGFLDDDPELKGT---------EGLGLPVGLDELLLLYPPPDDEFVVAIGDNKLRRK 71 (197)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC---------CCCCEEECCCHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf 990289999999999868996599999698100773---------22770446827887336777789998398799999
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 8876432372157
Q gi|254780279|r 87 SLNISAQHNIVHI 99 (280)
Q Consensus 87 ~~~~a~~~g~~vV 99 (280)
..+++.+.+..+.
T Consensus 72 i~~~l~~~~~~~~ 84 (197)
T cd03360 72 LAEKLLAAGYRFA 84 (197)
T ss_pred HHHHHHHCCCEEE
T ss_conf 9999986899678
No 349
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=87.14 E-value=2.4 Score=22.53 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=57.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-------------HHHCCCHHHH-----CCCCCC------CCCC
Q ss_conf 379998998779999999983899789999964898-------------0204553666-----087546------7545
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-------------PLIGQDVGNF-----VGISPM------GIKF 61 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-------------~~~g~d~~~~-----~~~~~~------~v~i 61 (280)
-||.++|+|-.|..+++.+....-=++ .++|...- ..+|+.-.+. ....+. ...+
T Consensus 31 s~vlvvG~GglG~~~~~~la~aGvg~l-~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~~~~~~l 109 (254)
T COG0476 31 SRVLVVGAGGLGSPAAKYLALAGVGKL-TIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERL 109 (254)
T ss_pred CEEEEECCCCCCCHHHHHHHHCCCCEE-EEEECCEEEECCCCCEEECCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 828997776335199999998269859-9985885770015650303341168888999999999978994899852336
Q ss_pred -CCCHHHHHCCCCEEEEEEC-CCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf -5685785213550476310-10247888764323721576502
Q gi|254780279|r 62 -SDNLAMAIQSVDGIIDFSS-PALTLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 62 -~~dl~~~~~~~DViIDFT~-P~~~~~~~~~a~~~g~~vViGTT 103 (280)
.++....+...|+++|.|- -+.-...-..|.++++|+|.|.+
T Consensus 110 ~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~ 153 (254)
T COG0476 110 DEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGA 153 (254)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEECCC
T ss_conf 67789998715889997335177899999999984998896312
No 350
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=87.11 E-value=0.48 Score=27.27 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=69.7
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCCEEEEEEECCCC----------HHHCCC-----HHHH------CCCCCCCCCC-C
Q ss_conf 799989987799999999838--99789999964898----------020455-----3666------0875467545-5
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNN--PSITLHSIIVRSGS----------PLIGQD-----VGNF------VGISPMGIKF-S 62 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~--~~~eLv~~i~~~~~----------~~~g~d-----~~~~------~~~~~~~v~i-~ 62 (280)
||.|+|.|=+|=+..+.++.. -++.|+..-.-+-+ ..+|+. ...+ +.+.+.+... .
T Consensus 26 ~vLivG~GGLGCAa~QYLa~AGvG~l~L~DfD~V~lSNLQRQvLH~da~~g~pKV~SA~~~L~~~NPhi~i~~in~~ld~ 105 (240)
T TIGR02355 26 KVLIVGLGGLGCAASQYLAAAGVGRLTLVDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALEEINPHIKINTINAKLDD 105 (240)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCEEEEEECCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHCCH
T ss_conf 67778367034567888864366327886337100112133441032557861268999999863991678057642268
Q ss_pred CCHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE--------CCCC--HH--HHHHHHHHHC--CCCC----E
Q ss_conf 68578521355047631-01024788876432372157650--------2223--13--5899987403--5552----1
Q gi|254780279|r 63 DNLAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT--------TGFS--VK--ENEVISSFAR--NAPI----V 123 (280)
Q Consensus 63 ~dl~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT--------TG~~--~e--~~~~l~~~s~--~~~i----l 123 (280)
..+..++...|||+|+| +-+.-...-..|.+.+.|+|+|. |=|+ +. -...|.++=. ...+ +
T Consensus 106 ~~l~~li~~~~~V~DctDNV~vRnQLn~~Cf~~K~PLvSgaAIRmEG~v~VFtY~~~~PcY~clS~LFg~~~LsCVEaGv 185 (240)
T TIGR02355 106 EELAALIAKHDVVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDDEPCYRCLSKLFGENALSCVEAGV 185 (240)
T ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCEEHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEHHHH
T ss_conf 89998862041788537765788887577762389800012210045178985259787188999984068512212103
Q ss_pred ECCCHHHHHHHHHHHHHHH
Q ss_conf 0000115689999999999
Q gi|254780279|r 124 KSSNMSLGINFLGFLVETA 142 (280)
Q Consensus 124 ~apN~SiGv~ll~~l~~~~ 142 (280)
.|| =+|+.=-.+.++.+
T Consensus 186 ~AP--~vG~vG~lQA~EaI 202 (240)
T TIGR02355 186 LAP--VVGVVGSLQALEAI 202 (240)
T ss_pred HHH--HHHHHHHHHHHHHH
T ss_conf 523--78888779999999
No 351
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=87.05 E-value=1.5 Score=23.84 Aligned_cols=31 Identities=35% Similarity=0.792 Sum_probs=23.8
Q ss_pred EEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEE
Q ss_conf 37999899-87799999999838-997899999
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNN-PSITLHSII 36 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~-~~~eLv~~i 36 (280)
|+|.|.|+ +-+|+++++.+.+. .+..+.+..
T Consensus 1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~~ 33 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLETYPDATVHATY 33 (235)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 979997556399999999998569980999973
No 352
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=87.04 E-value=2.6 Score=22.32 Aligned_cols=108 Identities=15% Similarity=0.222 Sum_probs=54.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 737999899877999999998389-9789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
+..|.|+|+|=||-++..++.+.. ++++. .+++......++.- .-.+....++..+. -+.-++|+....
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~-llEk~~~~a~~sS~-~NSgviHag~~y~p--------~slka~l~~~g~ 72 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVA-LLEKEDGVAQESSS-NNSGVIHAGLYYTP--------GSLKAKLCVAGN 72 (429)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCCCCC-CCCCCEECCCCCCC--------CCHHHHHHHHHH
T ss_conf 322999897389899999999738896599-99705765333456-76534425544898--------551339999999
Q ss_pred HHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHH---HCCCCCE
Q ss_conf 478887643237215765---022231358999874---0355521
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIG---TTGFSVKENEVISSF---ARNAPIV 123 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViG---TTG~~~e~~~~l~~~---s~~~~il 123 (280)
-.. .++|.++++|..-+ .-.+++++.+.|+.+ .++.++.
T Consensus 73 ~~~-~~~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~ 117 (429)
T COG0579 73 INE-FAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVF 117 (429)
T ss_pred HHH-HHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCC
T ss_conf 999-999998498612368089997827789999999988657986
No 353
>KOG3124 consensus
Probab=86.71 E-value=2.7 Score=22.21 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=59.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
|+|+.+|+|+|-+++.+......-.+-.-++..-. .+...-.-....++....+-.+.++..||++-.+-|....
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~-----~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~ 75 (267)
T KOG3124 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQ-----TERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIE 75 (267)
T ss_pred CCEEEECHHHHHHHHHHCCCCCCCCCHHHEEEECC-----CHHHHHHHHHCCCCEEEECHHHHHHHCCCEEEEECCHHHH
T ss_conf 96358635556999971043468775222245257-----3166666655078534412377775065326753611279
Q ss_pred HHHHH-H--HHCCCEEEEEECCCCHHHHH
Q ss_conf 88876-4--32372157650222313589
Q gi|254780279|r 86 QSLNI-S--AQHNIVHIIGTTGFSVKENE 111 (280)
Q Consensus 86 ~~~~~-a--~~~g~~vViGTTG~~~e~~~ 111 (280)
..+.. . ...++-+|++--|++-..++
T Consensus 76 ~vls~~~~~~~~~~iivS~aaG~tl~~l~ 104 (267)
T KOG3124 76 SVLSEIKPKVSKGKIIVSVAAGKTLSSLE 104 (267)
T ss_pred HHHHCCCCCCCCCEEEEEEEECCCHHHHH
T ss_conf 88604752122560899975144689889
No 354
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=86.65 E-value=1.4 Score=24.08 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=61.5
Q ss_pred EEEEEECCCHHHHHHHHHHHH---------CCCCEEEEEEECCCCHHHCC-CH----HHHCCCCCCCCCCCCCHHHHHC-
Q ss_conf 379998998779999999983---------89978999996489802045-53----6660875467545568578521-
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHN---------NPSITLHSIIVRSGSPLIGQ-DV----GNFVGISPMGIKFSDNLAMAIQ- 70 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~---------~~~~eLv~~i~~~~~~~~g~-d~----~~~~~~~~~~v~i~~dl~~~~~- 70 (280)
.||.++|+|--|-.+++++.. +...+=.+.+|+++--..++ |. ..+.. .........++.++++
T Consensus 26 ~riv~~GAGsAg~gia~~l~~~~~~~Gl~~~ea~~~i~lvD~~GLl~~~r~~~~~~~~~~~~-~~~~~~~~~~L~e~v~~ 104 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLAR-FANPERESGDLEDAVEA 104 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCEECCCCCCCHHHHHHHH-HCCCCCCCCCHHHHHHH
T ss_conf 58999883299999999999986432653243321078853777325797545888899998-64767767999999986
Q ss_pred -CCCEEEEEECC-CH-HHHHHHHHH-HCCCEEEEEECCCCH---HHHHHHHHHHCC
Q ss_conf -35504763101-02-478887643-237215765022231---358999874035
Q gi|254780279|r 71 -SVDGIIDFSSP-AL-TLQSLNISA-QHNIVHIIGTTGFSV---KENEVISSFARN 119 (280)
Q Consensus 71 -~~DViIDFT~P-~~-~~~~~~~a~-~~g~~vViGTTG~~~---e~~~~l~~~s~~ 119 (280)
++||+|=.|.+ .. +.+.++... -+..|+|.--+-=+. -.-+...++++.
T Consensus 105 ~kptvLIG~S~~~g~Fteevv~~Ma~~~~~PIIFaLSNPt~~aE~~peda~~~t~G 160 (254)
T cd00762 105 AKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEG 160 (254)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCC
T ss_conf 39988999589989889999997763388988997789998677999999975189
No 355
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=86.52 E-value=1.6 Score=23.64 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=48.3
Q ss_pred CEEEEEEC---CCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEE-EEEE
Q ss_conf 73799989---987799999999838997899999648980204553666087546754556857852135504-7631
Q gi|254780279|r 5 PMRISVLG---GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGI-IDFS 79 (280)
Q Consensus 5 ~IkV~I~G---aGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DVi-IDFT 79 (280)
-+|||++| +||.=+..++++....+.++.- +.++.-..-+++=+.....-..+.....++++++.+||+ |=++
T Consensus 174 Gl~iA~vGDlkygRtvhS~~~~L~~f~~~~v~l--~sP~~LrmP~~~~e~~~~~G~~~~~~~~l~e~~~~~DVlkiWY~ 250 (336)
T TIGR00670 174 GLKIALVGDLKYGRTVHSLIKALALFGNAEVYL--ISPEELRMPKEILEDLKAKGVKVRETESLEEVIDEADVLKIWYV 250 (336)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE--ECCHHHHCHHHHHHHHHHCCCEEEEEEEHHHHHCCCCEEEEEEE
T ss_conf 857999843120247667889986518956998--67724306178899985289628995224344215784788642
No 356
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=86.43 E-value=2.8 Score=22.11 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=52.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC--CCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECC
Q ss_conf 37999899877999999998389--978999996489802045536660875467545568578521--35504763101
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNP--SITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSP 81 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~--~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P 81 (280)
=||.|+|+|+.++.+.+.+.+++ +++++|.++..+.+.. ..+ ..-+...+++.+.+. .+|-|+ ++.|
T Consensus 125 rrvliiG~~~~a~~l~~~l~~~~~~g~~v~G~~~~~~~~~~------~~~--~~~i~~~~~l~~~~~~~~ideV~-ial~ 195 (442)
T TIGR03013 125 RRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPAY------VPS--EHVIENGDGLVEYVLRHRIDEIV-IALD 195 (442)
T ss_pred EEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC------CCC--CCCCCCHHHHHHHHHHCCCCEEE-EECC
T ss_conf 06999977199999999986197798189999967986334------676--66578778999999968999999-9678
Q ss_pred C----HHHHHHHHHHHCCCEEEEEEC
Q ss_conf 0----247888764323721576502
Q gi|254780279|r 82 A----LTLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 82 ~----~~~~~~~~a~~~g~~vViGTT 103 (280)
+ ...+.+..|...++.+.....
T Consensus 196 ~~~~~~~~~~l~~~~~~~v~v~~~p~ 221 (442)
T TIGR03013 196 ERRGSLPVDELLECKLSGIEVVDAPS 221 (442)
T ss_pred CHHCCCHHHHHHHHHHCCEEEEECCC
T ss_conf 21105089999987867909999342
No 357
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=86.34 E-value=2.8 Score=22.08 Aligned_cols=92 Identities=13% Similarity=0.232 Sum_probs=49.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC-------CCEEEEEE
Q ss_conf 999899-8779999999983899789999964898020455366608754675455685785213-------55047631
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS-------VDGIIDFS 79 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~-------~DViIDFT 79 (280)
|.|.|+ |++|+.+++.+.+ .+..+... .|+..+..... ..+. ..+..-.+++..++.. +|++. +.
T Consensus 2 IlVtGATG~iG~~v~~~L~~-~g~~v~~~-~R~~~~~~~~~---~~~v-~~d~~d~~~~~~a~~~~d~~~~~v~~v~-l~ 74 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQA-ASVPFLVA-SRSSSSSAGPN---EKHV-KFDWLDEDTWDNPFSSDDGMEPEISAVY-LV 74 (285)
T ss_pred EEEECCCCHHHHHHHHHHHH-CCCCEEEE-ECCHHHCCCCC---CCEE-EEECCCCCCHHHHHHHHHHHHCCCEEEE-EC
T ss_conf 89998998189999999986-89978999-58856646666---7536-8644481148889763532312741899-83
Q ss_pred CCC------HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 010------247888764323721576502223
Q gi|254780279|r 80 SPA------LTLQSLNISAQHNIVHIIGTTGFS 106 (280)
Q Consensus 80 ~P~------~~~~~~~~a~~~g~~vViGTTG~~ 106 (280)
.|. .....++.|.+.|++-|+-.++..
T Consensus 75 ~p~~~~~~~~~~~~i~aA~~aGV~~iV~lS~~~ 107 (285)
T TIGR03649 75 APPIPDLAPPMIKFIDFARSKGVRRFVLLSASI 107 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 899877678999999999984998899983035
No 358
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=86.10 E-value=2.9 Score=22.00 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 355047631010247888764323721576502223
Q gi|254780279|r 71 SVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFS 106 (280)
Q Consensus 71 ~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~ 106 (280)
++|+|| +|.|..+...++.-....+|++.--|-|+
T Consensus 104 kPDvII-~T~P~~~~s~lk~~~~~~iP~~tViTD~~ 138 (391)
T PRK13608 104 KPDLIL-LTFPTPVMSVLTEQFNINIPVATVMTDYR 138 (391)
T ss_pred CCCEEE-ECCHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf 929999-99828999999982499998899958713
No 359
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=85.99 E-value=2.9 Score=21.96 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=76.7
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHH----CCCCEEEEEEECCCC--HHHCCCHH-----HHCCCCCCCCCCCCCHHH-HHCC
Q ss_conf 73799989-98779999999983----899789999964898--02045536-----660875467545568578-5213
Q gi|254780279|r 5 PMRISVLG-GGRMGQALIKEIHN----NPSITLHSIIVRSGS--PLIGQDVG-----NFVGISPMGIKFSDNLAM-AIQS 71 (280)
Q Consensus 5 ~IkV~I~G-aGkMG~~ii~~i~~----~~~~eLv~~i~~~~~--~~~g~d~~-----~~~~~~~~~v~i~~dl~~-~~~~ 71 (280)
|++|||+| +|-==+..+.++.. +++.--+|++..... .+..-..+ ++.|+.....+..+=+++ -+..
T Consensus 1 pl~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~eTT~~~~~Y~~p~~pnv~lwDlPG~Gt~~f~~~~Yl~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 91799955899868999999868898877758888874677862047999998769728999987659899998658554
Q ss_pred CCEEEEEECCC---HHHHHHHHHHHCCCEEEEEE---------------CCCCHHH-HHHHHHHHC---------CCCCE
Q ss_conf 55047631010---24788876432372157650---------------2223135-899987403---------55521
Q gi|254780279|r 72 VDGIIDFSSPA---LTLQSLNISAQHNIVHIIGT---------------TGFSVKE-NEVISSFAR---------NAPIV 123 (280)
Q Consensus 72 ~DViIDFT~P~---~~~~~~~~a~~~g~~vViGT---------------TG~~~e~-~~~l~~~s~---------~~~il 123 (280)
+|++|=+|.-. .-...++.|.+.||++.+-- ..|++++ ++.+++-+. .-+|+
T Consensus 81 yD~fiiiss~rf~~nd~~la~~i~~~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c~~~L~~~gv~~p~VF 160 (197)
T cd04104 81 YDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVF 160 (197)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 57899983886414269999999980992899986121400056637876659999999999999999998699999989
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 000011568999999999998611
Q gi|254780279|r 124 KSSNMSLGINFLGFLVETAAEYLL 147 (280)
Q Consensus 124 ~apN~SiGv~ll~~l~~~~a~~l~ 147 (280)
+.+||+++-.=+.+|...+-+-|+
T Consensus 161 LvS~~~~~~yDFp~L~~tl~~~Lp 184 (197)
T cd04104 161 LVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 993798220776899999999808
No 360
>PRK07454 short chain dehydrogenase; Provisional
Probab=85.93 E-value=2.5 Score=22.40 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=53.5
Q ss_pred CCCCCEEEEEE-CC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCC-CEEEE
Q ss_conf 99887379998-99-87799999999838997899999648980204553666087546754556857852135-50476
Q gi|254780279|r 1 MHQSPMRISVL-GG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSV-DGIID 77 (280)
Q Consensus 1 M~~~~IkV~I~-Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~-DViID 77 (280)
|+.++||++|+ |+ +-+|+++++..++ .+..++. ++|+..+. +.+. +.+...-.++ =+..|
T Consensus 1 m~~~~mKvalITGas~GIG~a~A~~la~-~G~~V~l-~~R~~~~l--~~~~-------------~e~~~~g~~~~~~~~D 63 (241)
T PRK07454 1 MSLNSMPTALITGASRGIGKATALAFAK-AGWDLAL-VARSQDAL--EALA-------------EELRSTGVKVAAYSID 63 (241)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHH-CCCEEEE-EECCHHHH--HHHH-------------HHHHHCCCCEEEEEEE
T ss_conf 9989998899917587899999999998-7998999-98999999--9999-------------9999659928999951
Q ss_pred EECCCHHHHHHHHHHHC--CCEEEEEECCCC
Q ss_conf 31010247888764323--721576502223
Q gi|254780279|r 78 FSSPALTLQSLNISAQH--NIVHIIGTTGFS 106 (280)
Q Consensus 78 FT~P~~~~~~~~~a~~~--g~~vViGTTG~~ 106 (280)
.|.|+.+...++.+.+. .+.+++---|..
T Consensus 64 vt~~~~v~~~~~~~~~~~G~iDiLVnNAG~~ 94 (241)
T PRK07454 64 LSNPEAIAPGIAELLEQFGCPSVLINNAGAA 94 (241)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 8999999999999999759988999889889
No 361
>KOG4777 consensus
Probab=85.69 E-value=2 Score=23.03 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=63.7
Q ss_pred EEE-EECC-CHHHHHHHHHHHHCCCCEEEEE--EECCCCHHHCCCHHHHCCCCCC--------CCCCCCCHHHHHCCCCE
Q ss_conf 799-9899-8779999999983899789999--9648980204553666087546--------75455685785213550
Q gi|254780279|r 7 RIS-VLGG-GRMGQALIKEIHNNPSITLHSI--IVRSGSPLIGQDVGNFVGISPM--------GIKFSDNLAMAIQSVDG 74 (280)
Q Consensus 7 kV~-I~Ga-GkMG~~ii~~i~~~~~~eLv~~--i~~~~~~~~g~d~~~~~~~~~~--------~v~i~~dl~~~~~~~DV 74 (280)
|++ |+|+ |-.||..+..++.+|.+++.-. ..|+ .|+........+.. ...+..--.+.|..||+
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RS----AGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDI 80 (361)
T KOG4777 5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRS----AGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDI 80 (361)
T ss_pred CCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCEEECCCCHHCCCCCCHHHHHHHHHCCHHHCCCCCE
T ss_conf 1355210343147789998616985134230133314----698157604411202465034341375558402366558
Q ss_pred EEEEECCCH--HHHHHHHHHHCC---------------CEEEEEECCCCHHHHHHHHHHHC-----CCCCEECCCHHHHH
Q ss_conf 476310102--478887643237---------------21576502223135899987403-----55521000011568
Q gi|254780279|r 75 IIDFSSPAL--TLQSLNISAQHN---------------IVHIIGTTGFSVKENEVISSFAR-----NAPIVKSSNMSLGI 132 (280)
Q Consensus 75 iIDFT~P~~--~~~~~~~a~~~g---------------~~vViGTTG~~~e~~~~l~~~s~-----~~~il~apN~SiGv 132 (280)
+ ||.-++ .-+.-+.+.+.| +|+|+-+ .++|.++.++.--. +-.++.-||-|--+
T Consensus 81 v--fsgldad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~--VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~ 156 (361)
T KOG4777 81 V--FSGLDADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPE--VNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAI 156 (361)
T ss_pred E--EECCCCHHHHHHHHHHHHCCEEEEECCHHCCCCCCCCEEECC--CCHHHHHHHEECCCCCCCCCCEEEECCCCCEEE
T ss_conf 9--852782366565477886686998671430257997457334--587784253022225888995289669887036
Q ss_pred H
Q ss_conf 9
Q gi|254780279|r 133 N 133 (280)
Q Consensus 133 ~ 133 (280)
.
T Consensus 157 ~ 157 (361)
T KOG4777 157 C 157 (361)
T ss_pred E
T ss_conf 8
No 362
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=85.09 E-value=2.2 Score=22.83 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=28.7
Q ss_pred EEEEEEC---CCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 3799989---9877999999998389978999996489802045536660875467545568578521355047
Q gi|254780279|r 6 MRISVLG---GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~G---aGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
++|+++| +||.-+.+++++...++.++.-+ .++.-..-.++-+........+..++++++.+..+||+-
T Consensus 243 l~IalvGDLKyGRTVHSL~klLs~y~~v~~~lV--SP~~L~mP~~i~~~l~~~g~~~~e~~~L~e~i~~~DVlY 314 (430)
T PRK11891 243 AHIALVGDLKYGRTVHSLVKLLALYRGLKFTLV--SPPTLEMPAYIVDQISTNGHVIEQTDDLAAGLRGADVVY 314 (430)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE--CCHHHCCCHHHHHHHHHCCCEEEEECCHHHHCCCCCEEE
T ss_conf 579986454566009899999985469469998--921307988999999977986999378757403479898
No 363
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=84.92 E-value=3.1 Score=21.77 Aligned_cols=53 Identities=13% Similarity=0.042 Sum_probs=36.9
Q ss_pred HCCCCEEEEEECCCHH---HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 2135504763101024---78887643237215765022231358999874035552
Q gi|254780279|r 69 IQSVDGIIDFSSPALT---LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI 122 (280)
Q Consensus 69 ~~~~DViIDFT~P~~~---~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i 122 (280)
+.+-||+|=+|.+..+ .+.++.|.++|.++| +-|+..+..+.++-++.=.+|+
T Consensus 73 i~~~Dv~I~iS~SG~T~~~~~~~~~aK~~ga~iI-~IT~~~~S~la~~aD~~l~ip~ 128 (179)
T cd05005 73 IGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVV-LITSNPDSPLAKLADVVVVIPA 128 (179)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHCCEEEECCC
T ss_conf 9999999998199995689999999998799199-9979899978995899998187
No 364
>KOG2742 consensus
Probab=84.56 E-value=0.74 Score=26.00 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC--CHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEE-EEEE-
Q ss_conf 8737999899877999999998389978999996489--80204553666087546754556857852135504-7631-
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG--SPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGI-IDFS- 79 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~--~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DVi-IDFT- 79 (280)
+|. |+|+|+|-.-+..+-...+.+ +++-+++.|.. .....++ ..--..++.+.+.+-..||- |+-+
T Consensus 2 ~Pg-v~v~GTg~~arv~iP~l~e~~-f~v~A~w~Rt~~ea~a~aa~--------~~v~~~t~~~deiLl~~~vdlv~i~l 71 (367)
T KOG2742 2 SPG-VGVFGTGIFARVLIPLLKEEG-FEVKAIWGRTKTEAKAKAAE--------MNVRKYTSRLDEILLDQDVDLVCISL 71 (367)
T ss_pred CCC-EEEECCCHHHHHHHHHHHHCC-CHHHHHHCHHHHHHHHHHHC--------CCHHHCCCCCHHHHCCCCCCEEEECC
T ss_conf 984-157415714766524656335-00765634145677775413--------32111055300544367744367516
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 0102478887643237215765022231358999874035
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN 119 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~ 119 (280)
.|-...++...++..|+++|+--.-.+-++.+++-.+++.
T Consensus 72 pp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s 111 (367)
T KOG2742 72 PPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYS 111 (367)
T ss_pred CCCCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8740104564023577407852677542245667877635
No 365
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=84.39 E-value=1.9 Score=23.19 Aligned_cols=180 Identities=16% Similarity=0.262 Sum_probs=94.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH
Q ss_conf 37999899877999999998389978999996489802045536660875467545568578521355047631010247
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL 85 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~ 85 (280)
-+|+|+|||--|++-+.- .++.+++++-++ |+++. .+..+ ..|..+ -+..++.+.+|||.=. .|+...
T Consensus 17 k~iaVIGYGsQG~AhAlN-LrDSG~~V~vgl-r~g~s---~~~A~-----~~Gf~v-~~~~eA~~~aDvi~~L-~pD~~q 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQN-LRDSGVEVVVGV-RPGKS---FEVAK-----ADGFEV-MSVSEAVRTAQVVQML-LPDEQQ 84 (335)
T ss_pred CEEEEEEECCHHHHHHHH-HHHCCCCEEEEE-CCCCC---HHHHH-----HCCCEE-CCHHHHHHHCCEEEEE-CCHHHH
T ss_conf 979997567076898856-476399779997-99856---99999-----879931-6799999857978750-885879
Q ss_pred -H----HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf -8----887643237215765022231358999874035552-1000011568999999999998611566600899998
Q gi|254780279|r 86 -Q----SLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI-VKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM 159 (280)
Q Consensus 86 -~----~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i-l~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~ 159 (280)
+ .++-.++.|..+.. +-||+-. ...++- -+.+-| +.||- .-|-.+-.. |.. +...- ..+-.
T Consensus 85 ~~vy~~~i~p~lk~G~~L~F-aHGfnI~-~~~I~p-p~~vdV~mvAPK-gpG~~VR~~-------y~~-G~Gvp-~l~AV 151 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLF-SHGFNIH-FGQINP-PSYVDVAMVAPK-SPGHLVRRV-------FQE-GNGVP-ALVAV 151 (335)
T ss_pred HHHHHHHHCCCCCCCCEEEE-ECCCHHH-CCEECC-CCCCCEEEECCC-CCCHHHHHH-------HHC-CCCCC-EEEEE
T ss_conf 99997442553689972376-1443112-242457-899867998999-996579999-------871-79974-59999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCC
Q ss_conf 6416789986789999999985328876422111235767654334565013752882057999981899
Q gi|254780279|r 160 HHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEG 229 (280)
Q Consensus 160 HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~ 229 (280)
|+ | +||.|..+|-..+.+-+-..-..... .|.---.-+.+|+|.|++++-.
T Consensus 152 ~q----D-~sg~a~~~alaya~aiG~~raGv~eT--------------tF~eEtetDLfGEQ~VLcGg~~ 202 (335)
T PRK13403 152 HQ----D-ATGTALHVALAYAKGVGCTRAGVIET--------------TFQEETETDLFGEQAVLCGGVT 202 (335)
T ss_pred EE----C-CCCHHHHHHHHHHHHCCCCCCCEEEC--------------CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76----8-97539999999998617776775622--------------5188887651222465402899
No 366
>pfam07075 DUF1343 Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.
Probab=84.27 E-value=2.6 Score=22.28 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCHHHC-CCHHHHCCC---CCCCCCCCCC-------HHHHHCCCCEEE-E-----
Q ss_conf 7799999999838997899999648980204-553666087---5467545568-------578521355047-6-----
Q gi|254780279|r 15 RMGQALIKEIHNNPSITLHSIIVRSGSPLIG-QDVGNFVGI---SPMGIKFSDN-------LAMAIQSVDGII-D----- 77 (280)
Q Consensus 15 kMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g-~d~~~~~~~---~~~~v~i~~d-------l~~~~~~~DViI-D----- 77 (280)
+=|+..+..+.+.+++.|++.+.. ++-..| .+.++.... ...|+++.+= ..+.++..||+| |
T Consensus 12 ~~~~~~~d~L~~~~~v~l~~lF~P-EHG~~G~~~ag~~v~~~~D~~tglpv~SLYg~~~~Pt~~~L~~iDvlv~DiQDvG 90 (359)
T pfam07075 12 RDLEHLVDLLLAAPGVNLKALFGP-EHGFRGDAQAGEKVGDYVDPKTGLPVYSLYGKTRKPTPEMLKGVDVLVFDIQDVG 90 (359)
T ss_pred CCCCCHHHHHHHCCCCCEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEEEEECCC
T ss_conf 998789999966569868998179-8787404214985678768888990897989999999999836999999742276
Q ss_pred ---EECCCHHHHHHHHHHHCCCEEEEE-----ECCCCHH---HHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ---310102478887643237215765-----0222313---58999874035552100001156899999999999861
Q gi|254780279|r 78 ---FSSPALTLQSLNISAQHNIVHIIG-----TTGFSVK---ENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYL 146 (280)
Q Consensus 78 ---FT~P~~~~~~~~~a~~~g~~vViG-----TTG~~~e---~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l 146 (280)
||--.......+.|.++|+++||= -.|..-+ -....+...-.-||-+..-|.+| .+++......
T Consensus 91 ~R~YTyi~Tm~~~meaaa~~~~~~iVLDRPNPl~G~~veGpvl~~~~~SFvG~~piP~~hGmTiG-----ElA~~~n~e~ 165 (359)
T pfam07075 91 VRFYTYISTLAYAMEAAAEAGKEFIVLDRPNPLGGLYVEGPVLDPEFESFVGMYPIPVRHGMTIG-----ELALLFNGEF 165 (359)
T ss_pred EEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHH-----HHHHHHHHHC
T ss_conf 15654599999999999974995899478998888766578648777512344556600477899-----9999998714
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 1566600899998
Q gi|254780279|r 147 LPAKDWDFEILEM 159 (280)
Q Consensus 147 ~~~~~~dieI~E~ 159 (280)
+-+.|.+|+.+
T Consensus 166 --~~~~~L~VIpm 176 (359)
T pfam07075 166 --WLDADLTVIPM 176 (359)
T ss_pred --CCCCCEEEEEC
T ss_conf --88998799967
No 367
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.82 E-value=3.6 Score=21.31 Aligned_cols=86 Identities=20% Similarity=0.279 Sum_probs=43.1
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHH--CCCC-CCCCCC-CCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 9989987799999999838997899999648980204553666--0875-467545-56857852135504763101024
Q gi|254780279|r 9 SVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNF--VGIS-PMGIKF-SDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 9 ~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~--~~~~-~~~v~i-~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
.|+|.|+-|.++++.+.+ .+.++. +.|.+..+........+ .++. ..|... ..+....+..+|+|| -+|..-
T Consensus 4 ~V~GlG~sG~s~a~~L~~-~G~~v~-~~D~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~~~~~d~vV--~SPGI~ 79 (459)
T PRK02705 4 HVIGLGRSGIAAARLLKA-QGWEVV-VSERNDSPELLERQQELEQEGITVELGKPLELESFQPWLDQPDLVV--VSPGIP 79 (459)
T ss_pred EEEEECHHHHHHHHHHHH-CCCEEE-EEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCCEEE--ECCCCC
T ss_conf 999548999999999997-899599-9989899234789999987598698167666430133116788899--899649
Q ss_pred --HHHHHHHHHCCCEE
Q ss_conf --78887643237215
Q gi|254780279|r 85 --LQSLNISAQHNIVH 98 (280)
Q Consensus 85 --~~~~~~a~~~g~~v 98 (280)
.+.+..|.++|+|+
T Consensus 80 ~~~p~~~~a~~~gi~i 95 (459)
T PRK02705 80 WDHPTLVELREKGIEV 95 (459)
T ss_pred CCCHHHHHHHHCCCCE
T ss_conf 9899999999879972
No 368
>KOG2013 consensus
Probab=83.74 E-value=1 Score=25.00 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=53.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-------------HCCCHHH-----HCCCC-CCC-CCCCCC-
Q ss_conf 37999899877999999998389978999996489802-------------0455366-----60875-467-545568-
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-------------IGQDVGN-----FVGIS-PMG-IKFSDN- 64 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-------------~g~d~~~-----~~~~~-~~~-v~i~~d- 64 (280)
=||.++|||-.|-++++.++. .+++=+-++|.+.-.. +|+.-.. +.... ... +++-++
T Consensus 13 ~riLvVGaGGIGCELLKnLal-~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhanI 91 (603)
T KOG2013 13 GRILVVGAGGIGCELLKNLAL-TGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHANI 91 (603)
T ss_pred CEEEEEECCCCCHHHHHHHHH-HCCCEEEEEECCCEECCCHHHHHEEEHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 718999057321999999998-2677057973253202101245502041227618899999999749777468511334
Q ss_pred -----HHHHHCCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEE-EECCCCH
Q ss_conf -----578521355047631-010247888764323721576-5022231
Q gi|254780279|r 65 -----LAMAIQSVDGIIDFS-SPALTLQSLNISAQHNIVHII-GTTGFSV 107 (280)
Q Consensus 65 -----l~~~~~~~DViIDFT-~P~~~~~~~~~a~~~g~~vVi-GTTG~~~ 107 (280)
.-+.+..+|+|...= +-++-...-+.|+...+|+|= ||+||--
T Consensus 92 ~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~G 141 (603)
T KOG2013 92 KEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLG 141 (603)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEECCCCCCCC
T ss_conf 68532789999999999852239899898888876068723057666232
No 369
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=83.72 E-value=3.6 Score=21.28 Aligned_cols=118 Identities=12% Similarity=0.118 Sum_probs=67.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHH---CCCCC-------------CCCCCCCCHHH
Q ss_conf 37999899877999999998389978999996489802--04553666---08754-------------67545568578
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNF---VGISP-------------MGIKFSDNLAM 67 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~---~~~~~-------------~~v~i~~dl~~ 67 (280)
-+|+|-|+|+.|+..++.+. .-+..++++.|++..-+ .|-|...+ ...+. .+....++-+.
T Consensus 253 k~vaIqGfGNVg~~aA~kl~-e~GakVVavSDs~G~Iy~~~Gid~e~l~~~~~~k~~~~g~l~~y~~~~~~a~~~~~~~~ 331 (469)
T PTZ00079 253 KTAVVSGSGNVAQYCVEKLL-QLGAKVLTLSDSNGYIVEPNGFTEEKLAHLMELKNEKRGRIKEYLKHSSTAKYFENEKP 331 (469)
T ss_pred CEEEEECCCHHHHHHHHHHH-HCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCEECCCCCC
T ss_conf 88999766738999999999-76998999983894398889889999999999985116634456533887045589862
Q ss_pred HHCCCCEEEEEECCC-HHHHHHHHHHHCCCEEEE-EECCCC-HHHHHHHHHHHCCCCCEECCCH
Q ss_conf 521355047631010-247888764323721576-502223-1358999874035552100001
Q gi|254780279|r 68 AIQSVDGIIDFSSPA-LTLQSLNISAQHNIVHII-GTTGFS-VKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 68 ~~~~~DViIDFT~P~-~~~~~~~~a~~~g~~vVi-GTTG~~-~e~~~~l~~~s~~~~il~apN~ 128 (280)
.-.+|||+|=+.... ...++++...++|..+|+ |.-|=+ .+-.+.|++ ..|+++|-.
T Consensus 332 w~~~cDIliPcA~qneI~~~nA~~l~~~g~k~V~EGAN~P~T~eA~~il~~----~gI~v~Pd~ 391 (469)
T PTZ00079 332 WEVPCDLAFPCATQNEINLDDAKLLVKNGCKLVGEGANMPSTVEAINLFKS----KGVIYCPSK 391 (469)
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH----CCCEEECCH
T ss_conf 246676996555557878899999984886699967899989899999998----898895807
No 370
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=83.71 E-value=2.9 Score=21.92 Aligned_cols=31 Identities=13% Similarity=-0.010 Sum_probs=17.0
Q ss_pred CCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 355047631-01024788876432372157650
Q gi|254780279|r 71 SVDGIIDFS-SPALTLQSLNISAQHNIVHIIGT 102 (280)
Q Consensus 71 ~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGT 102 (280)
++|||...+ .|... -....+...++|+|.-.
T Consensus 93 ~~DvI~~~~~~~~~~-~~~~~~~~~~~~~v~~~ 124 (377)
T cd03798 93 RPDLIHAHFAYPDGF-AAALLKRKLGIPLVVTL 124 (377)
T ss_pred CCCEEEECCCCHHHH-HHHHHHHHCCCCEEEEE
T ss_conf 986899788406799-99999997399889996
No 371
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=83.64 E-value=3.7 Score=21.26 Aligned_cols=155 Identities=17% Similarity=0.247 Sum_probs=78.5
Q ss_pred EEEEEECCCH--HHHHHHHHHHHCCCCEE--EEEEECC-CCHH-----HCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 3799989987--79999999983899789--9999648-9802-----04553666087546754556857852135504
Q gi|254780279|r 6 MRISVLGGGR--MGQALIKEIHNNPSITL--HSIIVRS-GSPL-----IGQDVGNFVGISPMGIKFSDNLAMAIQSVDGI 75 (280)
Q Consensus 6 IkV~I~GaGk--MG~~ii~~i~~~~~~eL--v~~i~~~-~~~~-----~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DVi 75 (280)
|||+++|+|= ..+.+...+...+.+.+ +...|-+ ..+. ..+...+..+ .+..+..+.|..++++.+|-|
T Consensus 1 mKI~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~~~rL~~~~~la~~~~~~~~-~~~~v~~ttd~~eAl~gADfV 79 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPIKVHLTTDRREALEGADFV 79 (419)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHCCCCEE
T ss_conf 9799989746655899999984543489888999899859999999999999999609-980899967999983699999
Q ss_pred EEEECCCHH---HHHHHHHHHCCCEEEEE--ECC---CCH--HHH-------HHHHHHHCCCCCEECCCHHHHHHHHHHH
Q ss_conf 763101024---78887643237215765--022---231--358-------9998740355521000011568999999
Q gi|254780279|r 76 IDFSSPALT---LQSLNISAQHNIVHIIG--TTG---FSV--KEN-------EVISSFARNAPIVKSSNMSLGINFLGFL 138 (280)
Q Consensus 76 IDFT~P~~~---~~~~~~a~~~g~~vViG--TTG---~~~--e~~-------~~l~~~s~~~~il~apN~SiGv~ll~~l 138 (280)
|---.+... .--.+..+++|+ +| |+| +.- ..+ +.++++|-++ |--|||==+.++..+
T Consensus 80 i~~irvGg~~~r~~De~Ip~kyGv---igQET~G~GG~~~alRtiP~~l~ia~~i~e~cP~A---wliNytNP~~ivt~a 153 (419)
T cd05296 80 FTQIRVGGLEARALDERIPLKHGV---IGQETTGAGGFAKALRTIPVILDIAEDVEELAPDA---WLINFTNPAGIVTEA 153 (419)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---EEEECCCHHHHHHHH
T ss_conf 998733793076776543876497---65347674799987622899999999999869983---899737879999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999986115666008999986416789986789999999985
Q gi|254780279|r 139 VETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIAN 181 (280)
Q Consensus 139 ~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~ 181 (280)
+. +++ ++.++=.- |.|.||...+|+.+.-
T Consensus 154 ~~---r~~------~~k~vGlC-----h~~~~~~~~la~~Lg~ 182 (419)
T cd05296 154 VL---RHT------GDRVIGLC-----NVPIGLQRRIAELLGV 182 (419)
T ss_pred HH---HCC------CCCEEEEC-----CCHHHHHHHHHHHHCC
T ss_conf 99---668------99889979-----7779899999999589
No 372
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308 Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=83.56 E-value=1.7 Score=23.53 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=56.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC---CHHHHHCCC----CEEEE
Q ss_conf 73799989987799999999838997899999648980204553666087546754556---857852135----50476
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD---NLAMAIQSV----DGIID 77 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~---dl~~~~~~~----DViID 77 (280)
-+.|.|+|+|-.|+++++.++.-|.+.|.++=.|. +.+.-.+++. .++......+++ .+++.++.+ -+||
T Consensus 115 ~~~v~lFGAGHVG~ALv~~La~lP~~~~~WvD~Re-~~F~P~~~p~-~~~~gV~~~~~~H~P~Pe~~v~~aP~~s~~lv- 191 (270)
T TIGR02964 115 APHVVLFGAGHVGRALVRALAPLPECRVTWVDSRE-EEFYPEDIPL-ALIDGVAPLATDHSPEPEAEVAEAPPGSYFLV- 191 (270)
T ss_pred CCEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCH-HHCCCCCCCC-CCCCCCCEECCCCCCCHHHHHHHCCCCCEEEE-
T ss_conf 58179986771888999986169957999863715-5548743220-25477523016888887999983799965999-
Q ss_pred EECCCHH-HHHHHHHHHCC
Q ss_conf 3101024-78887643237
Q gi|254780279|r 78 FSSPALT-LQSLNISAQHN 95 (280)
Q Consensus 78 FT~P~~~-~~~~~~a~~~g 95 (280)
-|+-.+. ++....+++.+
T Consensus 192 lTHdHaLD~~L~~~iL~R~ 210 (270)
T TIGR02964 192 LTHDHALDLELCEAILARG 210 (270)
T ss_pred EECCHHHHHHHHHHHHCCC
T ss_conf 6058589999999996259
No 373
>PRK07578 short chain dehydrogenase; Provisional
Probab=83.45 E-value=3.7 Score=21.21 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=19.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCC
Q ss_conf 37999899-877999999998389
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNP 28 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~ 28 (280)
|||.|.|+ +-+|+++++.+.+..
T Consensus 1 MrVlVTGas~GIG~aia~~la~~~ 24 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSARH 24 (199)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 979999987489999999996799
No 374
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=83.39 E-value=3.7 Score=21.19 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=19.2
Q ss_pred CCCCEEEEEECCCH-HHHHHHHHHHCCCEEEEE
Q ss_conf 13550476310102-478887643237215765
Q gi|254780279|r 70 QSVDGIIDFSSPAL-TLQSLNISAQHNIVHIIG 101 (280)
Q Consensus 70 ~~~DViIDFT~P~~-~~~~~~~a~~~g~~vViG 101 (280)
.++|+|+-.+.|-. .......+...++|+|.-
T Consensus 98 ~~~Div~~~~~~~~~~~~~~~~~~~~~~p~v~~ 130 (394)
T cd03794 98 RRPDVIIATSPPLLIALAALLLARLKGAPFVLE 130 (394)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 899889991784788999999998639969999
No 375
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=83.32 E-value=3.8 Score=21.18 Aligned_cols=31 Identities=23% Similarity=0.098 Sum_probs=16.1
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCEEEEE-ECC
Q ss_conf 550476310102478887643237215765-022
Q gi|254780279|r 72 VDGIIDFSSPALTLQSLNISAQHNIVHIIG-TTG 104 (280)
Q Consensus 72 ~DViIDFT~P~~~~~~~~~a~~~g~~vViG-TTG 104 (280)
+|++|==+..... ..+.|....+|+|-| +-+
T Consensus 100 ~D~iviR~~~~~~--~~~~a~~~~vPVINa~~d~ 131 (308)
T PRK00779 100 VDAIMIRTFEHET--LEELAEYSTVPVINGLTDL 131 (308)
T ss_pred CCEEEEECCCCCH--HHHHHHHCCCCEEECCCCC
T ss_conf 7799993243011--8999874898789678887
No 376
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=83.27 E-value=3.2 Score=21.64 Aligned_cols=195 Identities=19% Similarity=0.204 Sum_probs=95.4
Q ss_pred EEEEEECC--CHHHHHHHHHHHHCCCCEEEEEEE----CCCCHHHCCCHHHHCCCCCCCCCCCCC-HHH-------HHCC
Q ss_conf 37999899--877999999998389978999996----489802045536660875467545568-578-------5213
Q gi|254780279|r 6 MRISVLGG--GRMGQALIKEIHNNPSITLHSIIV----RSGSPLIGQDVGNFVGISPMGIKFSDN-LAM-------AIQS 71 (280)
Q Consensus 6 IkV~I~Ga--GkMG~~ii~~i~~~~~~eLv~~i~----~~~~~~~g~d~~~~~~~~~~~v~i~~d-l~~-------~~~~ 71 (280)
+.+...|+ |-+|..+.+.+. ..++....+.. |.+-+....+-+.-..+...|..+++. +++ .+++
T Consensus 51 ~~~~a~GflGg~tg~~~~~~l~-~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~ 129 (310)
T COG1105 51 IPVTALGFLGGFTGEFFVALLK-DEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLES 129 (310)
T ss_pred CCCEEEEECCCCCHHHHHHHHH-HCCCCCEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9716999668865789999987-638983079905887356999717888468704889988999999999999975664
Q ss_pred CCEEEEE-ECCCHH-----HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5504763-101024-----7888764323721576502223135899987403555210000115689999999999986
Q gi|254780279|r 72 VDGIIDF-SSPALT-----LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEY 145 (280)
Q Consensus 72 ~DViIDF-T~P~~~-----~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~ 145 (280)
.|+|+=. |.|... .+.++.|.+.++.+++-||| +.|.+.-+.-|.++=||-- .+-....+.
T Consensus 130 ~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg------~~L~~~L~~~P~lIKPN~~-------EL~~~~g~~ 196 (310)
T COG1105 130 DDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG------EALLAALEAKPWLIKPNRE-------ELEALFGRE 196 (310)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHCCCCCEEECCHH-------HHHHHHCCC
T ss_conf 889999088999999799999999998659839997985------9999987079938945889-------999996898
Q ss_pred HCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC--CEEEEE
Q ss_conf 115666008999986416789986789999999985328876422111235767654334565013752882--057999
Q gi|254780279|r 146 LLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSI--VGEHSV 223 (280)
Q Consensus 146 l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~--~g~H~V 223 (280)
+. -+-++++ .++.+.. ++.. .+ |-|+-..|. +..+.+
T Consensus 197 ~~----~~~d~~~----------------~a~~l~~-~g~~-------------------~V-iVSlG~~Gal~~~~~~~ 235 (310)
T COG1105 197 LT----TLEDVIK----------------AARELLA-EGIE-------------------NV-IVSLGADGALLVTAEGV 235 (310)
T ss_pred CC----CHHHHHH----------------HHHHHHH-CCCC-------------------EE-EEEECCCCCEEECCCCE
T ss_conf 89----7488999----------------9999987-7998-------------------89-99756765289806867
Q ss_pred EEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC
Q ss_conf 98189958999999727376799999999998348
Q gi|254780279|r 224 VIAGEGESITLSHSAYDRRIFARGSLTAALWAKSQ 258 (280)
Q Consensus 224 ~f~~~~E~i~i~H~a~~R~~Fa~Gal~aa~~l~~~ 258 (280)
.|..+-. ..+.+.+-..+++.-|-+ +.|+.++
T Consensus 236 ~~a~~p~-~~vvstVGAGDs~VAGf~--~~~~~~~ 267 (310)
T COG1105 236 YFASPPK-VQVVSTVGAGDSMVAGFL--AGLLKGK 267 (310)
T ss_pred EEEECCC-CCEECCCCCHHHHHHHHH--HHHHCCC
T ss_conf 9986797-652457680388999999--9997599
No 377
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=82.87 E-value=3.9 Score=21.06 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=77.6
Q ss_pred EEEEC-C-CHHHH--HHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCC---CCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 99989-9-87799--999999838997899999648980204553666087546---75455685785213550476310
Q gi|254780279|r 8 ISVLG-G-GRMGQ--ALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPM---GIKFSDNLAMAIQSVDGIIDFSS 80 (280)
Q Consensus 8 V~I~G-a-GkMG~--~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~---~v~i~~dl~~~~~~~DViIDFT~ 80 (280)
|.|.| + |-+|. .+++.+...++++++.+|-++.. .-+.+.......+. -..++++..+....+|++| |.
T Consensus 205 vLimgGg~G~~g~i~~l~~~L~~~~~~qiiVVcGrN~~--L~~~L~~~~~~~~~~v~vlGf~~~~~~~~~~~d~~i--~k 280 (388)
T PRK13609 205 LLIVAGAHGVLGNVKELCQSFMSVPDLQVVVVCGKNEA--LKQDLVGLQETNPDALKVFGYVENIDELFRVTSCMI--TK 280 (388)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHHHHCCCCCEEEEECHHHHHHHHHHCCEEE--EC
T ss_conf 99976601211479999999745899249999089989--999999887507994699504520999998575999--57
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC-CCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 10247888764323721576502223135899987403-55521000011568999999999998611566600899998
Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFAR-NAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM 159 (280)
Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~-~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~ 159 (280)
|.+. .+-.|+..|+|+|+= --+.-+|..-.+-+.+ ..+++. ..- ..+...+..+|.. +-+..+|
T Consensus 281 ~Gg~--t~~E~~~~~~P~i~~-~~~pgqe~~N~~~~~~~g~~~~~-~~~-------~~~~~~~~~ll~~----~~~l~~m 345 (388)
T PRK13609 281 PGGI--TLSEAAALQVPVILY-KPVPGQENENAMYFERKGAAVVI-RDD-------SEVFAKTEALLQD----DMKLLQM 345 (388)
T ss_pred CCHH--HHHHHHHHCCCEEEC-CCCCCHHHHHHHHHHHCCCEEEE-CCH-------HHHHHHHHHHHCC----HHHHHHH
T ss_conf 8645--899999948998970-68996167779999978987997-999-------9999999999769----9999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 6416789986789999999985
Q gi|254780279|r 160 HHRRKLDSPSGTALLLGEAIAN 181 (280)
Q Consensus 160 HH~~K~DaPSGTA~~la~~i~~ 181 (280)
..+.|.-+----|..+++.|-+
T Consensus 346 ~~~~~~~~~p~aa~~I~~~il~ 367 (388)
T PRK13609 346 KEAMKSIYLPEPADHIVDTILA 367 (388)
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999862798589999999998
No 378
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.34 E-value=4.1 Score=20.93 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=25.4
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 37999899-877999999998389978999996489
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSG 40 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~ 40 (280)
|+|.|.|+ |-.|+.+++.+.+. +.++.+. ++..
T Consensus 1 ~~iLVtG~tGfiG~~l~~~L~~~-g~~V~~~-~r~~ 34 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAA-GHDVRGL-DRLR 34 (314)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEE-ECCC
T ss_conf 96999928877799999999858-9979999-1787
No 379
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.02 E-value=4.2 Score=20.85 Aligned_cols=72 Identities=13% Similarity=0.264 Sum_probs=42.5
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCC----CCEEE-EEEECCCCHHHCCCHH---HHC--CCC-CCCCCCCCCHHHHHCC
Q ss_conf 8737999899-877999999998389----97899-9996489802045536---660--875-4675455685785213
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNP----SITLH-SIIVRSGSPLIGQDVG---NFV--GIS-PMGIKFSDNLAMAIQS 71 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~----~~eLv-~~i~~~~~~~~g~d~~---~~~--~~~-~~~v~i~~dl~~~~~~ 71 (280)
+|+||+|.|| |..--.++-.+.+-+ +-++. -.+|.+.. ...--| +.. ..+ -.++.+++|++++|++
T Consensus 122 ~Pl~V~VTgAag~iaYsLi~~lasGevFG~d~~i~L~LlDip~~--~e~L~Gv~MELeDcAfPlL~~v~~t~d~~~AF~d 199 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPEN--LEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKD 199 (452)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHH--HHHHHCHHHHHHHHCCCCCCCEEEECCHHHHHCC
T ss_conf 87469994684476899999973767348987179995477407--7886363356765344001710676799998557
Q ss_pred CCEEEE
Q ss_conf 550476
Q gi|254780279|r 72 VDGIID 77 (280)
Q Consensus 72 ~DViID 77 (280)
+|++|=
T Consensus 200 ad~ail 205 (452)
T cd05295 200 AHVIVL 205 (452)
T ss_pred CCEEEE
T ss_conf 988999
No 380
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=81.96 E-value=2.2 Score=22.74 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=39.0
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC---CCCHHHHHCCCCEEEEEE
Q ss_conf 88737999899877999999998389978999996489802045536660875467545---568578521355047631
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF---SDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i---~~dl~~~~~~~DViIDFT 79 (280)
-.|-+|.|+|+|..|...++.... -+.++. ++|...... +.+.+..+ ......+ ...+++.+.++|+||-..
T Consensus 18 v~pa~vvViG~Gv~G~~A~~~A~~-lGa~V~-v~D~~~~~l--~~~~~~~~-~~v~~~~~~~~~~l~~~i~~aDvvIgav 92 (150)
T pfam01262 18 VPPAKVVVIGGGVVGLGAAATAKG-LGAPVT-ILDVRPERL--EQLDSLFA-EFVETDIFSNCEYLAEAIAEADLVIGTV 92 (150)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCEEE-EEECCHHHH--HHHHHHCC-CCCCCHHHCCHHHHHHHHHHCCEEEEEE
T ss_conf 767779998987899999999986-799899-972999999--99998647-6200166537999999974387999720
No 381
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=81.65 E-value=3.8 Score=21.16 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=15.3
Q ss_pred CCCEEEEEECCC-HHHHHHHHHHHCCCEEEE
Q ss_conf 355047631010-247888764323721576
Q gi|254780279|r 71 SVDGIIDFSSPA-LTLQSLNISAQHNIVHII 100 (280)
Q Consensus 71 ~~DViIDFT~P~-~~~~~~~~a~~~g~~vVi 100 (280)
++|||. +..+. ........+.+.++|+|.
T Consensus 96 ~pDivh-~h~~~~~~~~~~~~~~~~~~p~v~ 125 (359)
T cd03823 96 RPDVVH-FHHLQGLGVSILRAARDRGIPIVL 125 (359)
T ss_pred CCCEEE-ECCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999-888317679999999984998999
No 382
>PRK05826 pyruvate kinase; Provisional
Probab=81.29 E-value=4.5 Score=20.68 Aligned_cols=83 Identities=22% Similarity=0.213 Sum_probs=50.9
Q ss_pred CCHHHHHCCCCEEE----------EEE-CCCHHHHHHHHHHHCCCEEEEEECCCC------HHHHHHHHHHHCC-----C
Q ss_conf 68578521355047----------631-010247888764323721576502223------1358999874035-----5
Q gi|254780279|r 63 DNLAMAIQSVDGII----------DFS-SPALTLQSLNISAQHNIVHIIGTTGFS------VKENEVISSFARN-----A 120 (280)
Q Consensus 63 ~dl~~~~~~~DViI----------DFT-~P~~~~~~~~~a~~~g~~vViGTTG~~------~e~~~~l~~~s~~-----~ 120 (280)
+++++.++.+|.|. .+. .|..-...++.|.+.|||++++|-=+. -....++.+.+.. =
T Consensus 229 ~NldeIi~~sDgIMIARGDLgvEi~~e~vp~~Qk~Ii~~c~~~gkpvivATqmLeSM~~~p~PTRAEv~DVanAv~dG~D 308 (461)
T PRK05826 229 DNLDEIIEASDGIMVARGDLGVEIPDAEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTD 308 (461)
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 73999998658999977853032687674999999999887549989997656897607999972778789999983687
Q ss_pred CCEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 52100001156899999999999861
Q gi|254780279|r 121 PIVKSSNMSLGINFLGFLVETAAEYL 146 (280)
Q Consensus 121 ~il~apN~SiGv~ll~~l~~~~a~~l 146 (280)
.++.+.-+++|-.=. ..++.+++..
T Consensus 309 avmLS~ETA~G~yPv-~aV~~m~~I~ 333 (461)
T PRK05826 309 AVMLSGETAAGKYPV-EAVEAMARIC 333 (461)
T ss_pred EEEECHHHCCCCCHH-HHHHHHHHHH
T ss_conf 899743223787889-9999999999
No 383
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=81.11 E-value=3.9 Score=21.10 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=16.4
Q ss_pred CCCEEEEEECCCHH-HHHHHHHHHCCCEEEE
Q ss_conf 35504763101024-7888764323721576
Q gi|254780279|r 71 SVDGIIDFSSPALT-LQSLNISAQHNIVHII 100 (280)
Q Consensus 71 ~~DViIDFT~P~~~-~~~~~~a~~~g~~vVi 100 (280)
++|||.-++ |-.. ......+.+.++|+|.
T Consensus 84 ~~DvIh~~~-~~~~~~~a~~~~~~~~ip~V~ 113 (374)
T cd03817 84 GPDIVHTHT-PFSLGLLGLRVARKLGIPVVA 113 (374)
T ss_pred CCCEEEECC-HHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999878-258899999999974995999
No 384
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=80.88 E-value=4.6 Score=20.58 Aligned_cols=143 Identities=11% Similarity=0.121 Sum_probs=74.8
Q ss_pred CCCCCEE---EEEECCCHHHHH-HHHHHHHCCCC-----------EEEEEEECCCCHHHCCCHHHHCCC-CCCCCCCCCC
Q ss_conf 9988737---999899877999-99999838997-----------899999648980204553666087-5467545568
Q gi|254780279|r 1 MHQSPMR---ISVLGGGRMGQA-LIKEIHNNPSI-----------TLHSIIVRSGSPLIGQDVGNFVGI-SPMGIKFSDN 64 (280)
Q Consensus 1 M~~~~Ik---V~I~GaGkMG~~-ii~~i~~~~~~-----------eLv~~i~~~~~~~~g~d~~~~~~~-~~~~v~i~~d 64 (280)
|+....| |+|+|.=+.|+. ++..+...+-. .+.+.+...+.++.=-|.+-+... ...+......
T Consensus 1 ~~~~~~ksG~VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpGi~~~~~~l~~~~~~~ 80 (296)
T PRK00089 1 MSPEKFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKA 80 (296)
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99889837999999899988899999996896176149599872838999997997999998998667467787899999
Q ss_pred HHHHHCCCCEE---EEEECC-C-HHHHHHHHHHHCCCEEEEEECCCC---HHH-HHHHHHHHCCCC----CEECCCHHHH
Q ss_conf 57852135504---763101-0-247888764323721576502223---135-899987403555----2100001156
Q gi|254780279|r 65 LAMAIQSVDGI---IDFSSP-A-LTLQSLNISAQHNIVHIIGTTGFS---VKE-NEVISSFARNAP----IVKSSNMSLG 131 (280)
Q Consensus 65 l~~~~~~~DVi---IDFT~P-~-~~~~~~~~a~~~g~~vViGTTG~~---~e~-~~~l~~~s~~~~----il~apN~SiG 131 (280)
...+++.+|++ +|.+.+ . .-...++.+.+.++|+++.-.=++ .++ ++.++++.+..+ +.+|.--..|
T Consensus 81 ~~~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv~k~~l~~~~~~l~~~~~f~~if~iSA~~~~g 160 (296)
T PRK00089 81 AWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVDKEELLPLLEELSELMDFAEIVPISALKGDN 160 (296)
T ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99999759999999857889898899999988874998899954788428988999999998537976599996778889
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999999
Q gi|254780279|r 132 INFLGFLVETAA 143 (280)
Q Consensus 132 v~ll~~l~~~~a 143 (280)
+..|...+...+
T Consensus 161 i~~L~~~l~~~l 172 (296)
T PRK00089 161 VDELLDLIAKYL 172 (296)
T ss_pred HHHHHHHHHHHC
T ss_conf 899999999867
No 385
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=80.42 E-value=4.8 Score=20.48 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=26.0
Q ss_pred HCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC-HHHHHHHHH
Q ss_conf 60875467545568578521355047631010-247888764
Q gi|254780279|r 51 FVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA-LTLQSLNIS 91 (280)
Q Consensus 51 ~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~-~~~~~~~~a 91 (280)
.....+.|+.+.+|..++.+..++.|-||+=. .+.++++..
T Consensus 61 w~~VEdAgVkvv~dD~eAakh~Ei~ilFTPFGk~T~~Iak~I 102 (341)
T PRK12557 61 WKRVEDAGVKVVTDDAEAAKHAEIAVLFTPFGKKTVEIAKEI 102 (341)
T ss_pred HHHHHHCCCEEECCCHHHHHCCEEEEEECCCCCHHHHHHHHH
T ss_conf 999997496673361666526758999647640678999988
No 386
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=80.40 E-value=4.8 Score=20.48 Aligned_cols=127 Identities=13% Similarity=0.274 Sum_probs=65.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHHCC---CCCCCCCCCCCHHHH---HCCCCE
Q ss_conf 88737999899877999999998389978999996489802--0455366608---754675455685785---213550
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNFVG---ISPMGIKFSDNLAMA---IQSVDG 74 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~~~---~~~~~v~i~~dl~~~---~~~~DV 74 (280)
.+|-||.|+|.|-.|. ++++.+.++++-+-.++-++.-. ..+-++...+ .+...+.+.|-..-+ .+..||
T Consensus 74 ~~pk~VLIiGGGDG~~--~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDv 151 (240)
T pfam01564 74 PNPKKVLIIGGGDGGA--LREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDV 151 (240)
T ss_pred CCCCEEEEECCCCHHH--HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCE
T ss_conf 8855367645865799--99985679953899975788999999998798524347985599981689999857254458
Q ss_pred E-EEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEE--CCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4-7631010247888764323721576502223135899987403555210--00011568999999999998611
Q gi|254780279|r 75 I-IDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVK--SSNMSLGINFLGFLVETAAEYLL 147 (280)
Q Consensus 75 i-IDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~--apN~SiGv~ll~~l~~~~a~~l~ 147 (280)
| +|+|-|..... .=|+.+..+.+++.-+.-+++. +.+..+-...+..+.+...+.|+
T Consensus 152 II~D~~DP~~~~~----------------~Lfs~eFy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~i~~~l~~~F~ 211 (240)
T pfam01564 152 IIVDSTDPVGPAE----------------NLFSKEFYDLLKRALKEDGVFVTQAESPWLHLELIINILKNGKKVFP 211 (240)
T ss_pred EEEECCCCCCHHH----------------HHHHHHHHHHHHHHCCCCCEEEEECCCHHHCHHHHHHHHHHHHHHCC
T ss_conf 9995899765334----------------44229999999986599978999248834379999999999997789
No 387
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=80.22 E-value=4.8 Score=20.44 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=78.2
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH--CCCCE-EE
Q ss_conf 9988737999899-87799999999838997899999648980204553666087546754556857852--13550-47
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI--QSVDG-II 76 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~--~~~DV-iI 76 (280)
|++ ||||.|+== -.+...+.+.+.+.++++.++.... +.+. .+.+ ..+|+ +.
T Consensus 1 M~~-~i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~------~~eA-----------------~~~l~~~~pDLvLL 56 (225)
T PRK10046 1 MTA-PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGN------LAQA-----------------RMMIERFKPGLILL 56 (225)
T ss_pred CCC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECC------HHHH-----------------HHHHHHCCCCEEEE
T ss_conf 999-88699995989999999999972899549999899------9999-----------------99997359999998
Q ss_pred EEECCCH-HHHHHHHHHHCCCEE-EEEECCCCHHHH--HHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 6310102-478887643237215-765022231358--999874035552100001156899999999999861156660
Q gi|254780279|r 77 DFSSPAL-TLQSLNISAQHNIVH-IIGTTGFSVKEN--EVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDW 152 (280)
Q Consensus 77 DFT~P~~-~~~~~~~a~~~g~~v-ViGTTG~~~e~~--~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~ 152 (280)
|.-.|+. .++.++...+.+.+. ||=.|++++.+. +.++.=+-. =++.--.|.-=..-+.++.+.- +.+...+..
T Consensus 57 Di~LPd~~Glell~~lr~~~~~~~VI~iTA~~d~~~~~~Al~~Ga~D-YLvKPf~~erl~~~L~~y~~~~-~~l~~~~~~ 134 (225)
T PRK10046 57 DNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFD-YLIKPIAYERLGQTLTRFRQRK-HMLESIDSA 134 (225)
T ss_pred ECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCC-CEECCCCHHHHHHHHHHHHHHH-HHHCCCCCC
T ss_conf 28989997999999999648799889996899999999999749983-1028999999999999999999-986357768
Q ss_pred HH-HHHHHHH-----HCCCCCCCHHHHHHHHHHHHH
Q ss_conf 08-9999864-----167899867899999999853
Q gi|254780279|r 153 DF-EILEMHH-----RRKLDSPSGTALLLGEAIANG 182 (280)
Q Consensus 153 di-eI~E~HH-----~~K~DaPSGTA~~la~~i~~~ 182 (280)
+= +|=...+ ..+.+.|.|....+.+.+.+.
T Consensus 135 ~Q~~iD~~~~~~~~~~~~~~lpKGl~~~Tl~~v~~~ 170 (225)
T PRK10046 135 SQKQIDEMFNAYARGEPKDELPTGIDPLTLNAVRKL 170 (225)
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999996233568885658999998999999999
No 388
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=80.16 E-value=3.3 Score=21.52 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=86.7
Q ss_pred ECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCC-----------------
Q ss_conf 899877999999998389978999996489802045536660875467545568578521355-----------------
Q gi|254780279|r 11 LGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVD----------------- 73 (280)
Q Consensus 11 ~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~D----------------- 73 (280)
+|-|+||-=-++-+.+. ++.| -++|-... ........|..+.++..++..++|
T Consensus 2 IGLGNMGgPMA~NL~KA-GH~v-~~FDL~p~--------av~~~v~aG~~~A~S~~~a~~~Ad~vITMLPAg~HV~sVY~ 71 (290)
T TIGR01692 2 IGLGNMGGPMAANLLKA-GHAV-RVFDLSPK--------AVEELVEAGAQAAASAAEAAEGADVVITMLPAGKHVISVYS 71 (290)
T ss_pred CCCCCCCHHHHHHHHHH-CCEE-EEEECCHH--------HHHHHHHCCHHCCCCHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 78888822799998611-8725-77517889--------99999960022054579884558868634886034899983
Q ss_pred -------------EEEEEEC--CCHHHHHHHHHHHCCCEE----EEEEC------------CCCHHHHHHHHHH----HC
Q ss_conf -------------0476310--102478887643237215----76502------------2231358999874----03
Q gi|254780279|r 74 -------------GIIDFSS--PALTLQSLNISAQHNIVH----IIGTT------------GFSVKENEVISSF----AR 118 (280)
Q Consensus 74 -------------ViIDFT~--P~~~~~~~~~a~~~g~~v----ViGTT------------G~~~e~~~~l~~~----s~ 118 (280)
.+||+|+ |+...+..+.+.++|..+ |+|=| |=.+++.+.-+.+ ++
T Consensus 72 gd~gIL~~~~K~~LlIDcSTIDpdsAr~~A~~Aa~~G~~f~DAPVSGG~GgA~AGTLtFmVGG~a~~F~~~~p~L~~Mg~ 151 (290)
T TIGR01692 72 GDDGILAKVAKGSLLIDCSTIDPDSARKVAELAAAHGLVFVDAPVSGGVGGARAGTLTFMVGGEAEEFARARPVLEPMGR 151 (290)
T ss_pred CCHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 31334113678896332456786789999999998187210367775356520122305643765357889999853666
Q ss_pred CC----------CCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHCCCCC
Q ss_conf 55----------521000011568999999999998611566600899998641678998678-9999999985328876
Q gi|254780279|r 119 NA----------PIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGT-ALLLGEAIANGRKVNL 187 (280)
Q Consensus 119 ~~----------~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGT-A~~la~~i~~~~~~~~ 187 (280)
++ .-=++-||=|||-.+ =.. +.|. +=|. +|= ...|.+.+...-+..|
T Consensus 152 ~~~HcG~~GAGQ~AKICNNmlLGIsM~-Gta----EA~~--------Lg~k---------lGLdp~~L~~i~~~SSG~CW 209 (290)
T TIGR01692 152 NIVHCGDHGAGQAAKICNNMLLGISMI-GTA----EAMA--------LGEK---------LGLDPKVLFEIANTSSGRCW 209 (290)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHH-HHH----HHHH--------HHHH---------CCCCHHHHHHHHHHCCCCCC
T ss_conf 568668888751578998899999899-999----9999--------9986---------17888899999730478630
Q ss_pred CCCCCCCCCCCC
Q ss_conf 422111235767
Q gi|254780279|r 188 TDHMVLNRHIQQ 199 (280)
Q Consensus 188 ~~~~~~~~~~~~ 199 (280)
.-..+.-.+|..
T Consensus 210 S~~tYnPvPGV~ 221 (290)
T TIGR01692 210 SLDTYNPVPGVM 221 (290)
T ss_pred CCCCCCCCCCCC
T ss_conf 234669688898
No 389
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=79.62 E-value=1.7 Score=23.54 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=24.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 87379998998779999999983899789999964
Q gi|254780279|r 4 SPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVR 38 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~ 38 (280)
+..+|+|+|+|-||.-|++ |+...++.+ ..+|.
T Consensus 4 ~~v~vaVIGaGaMGaGIA~-VAA~aGH~V-~LYD~ 36 (508)
T TIGR02279 4 NVVKVAVIGAGAMGAGIAQ-VAARAGHQV-LLYDI 36 (508)
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHCCCEE-EEECC
T ss_conf 4106899646852103899-998259848-87228
No 390
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=79.44 E-value=5.1 Score=20.27 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=32.8
Q ss_pred CEEEECCCCCEEEEEEEECCCCEEEEEE----EEC-CHHHHHHHHHHHHHHHHCC----CCCCCCHHHHH
Q ss_conf 0137528820579999818995899999----972-7376799999999998348----99836888982
Q gi|254780279|r 209 IASLRAGSIVGEHSVVIAGEGESITLSH----SAY-DRRIFARGSLTAALWAKSQ----IPGLYSMRDVL 269 (280)
Q Consensus 209 i~s~R~g~~~g~H~V~f~~~~E~i~i~H----~a~-~R~~Fa~Gal~aa~~l~~~----~~G~y~m~dvL 269 (280)
|+.++.++ |. .|..-++|.-+-|.- -+. =--+|+.=++ |+.||... +||+|.+-+-|
T Consensus 314 v~~y~~~d--Gr-~i~lLaeGRLvNLa~a~GHP~eVMd~SFa~Qal-a~~~L~~~~~~l~~~V~~lP~~i 379 (413)
T cd00401 314 VDRYELPD--GR-RIILLAEGRLVNLGCATGHPSFVMSNSFTNQVL-AQIELWTNRDKYEVGVYFLPKKL 379 (413)
T ss_pred CEEEECCC--CC-EEEEEECCCEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHCCCCCCCCEEECCHHH
T ss_conf 44899689--98-899995156888636888945861145799999-99999867030589738787889
No 391
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=79.33 E-value=4.3 Score=20.75 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=22.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 799989987799999999838997899999648
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRS 39 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~ 39 (280)
||.|+|+|.||+.+++.+.+. +..=+.++.|+
T Consensus 176 ~vLvIGaGem~~l~~k~L~~~-g~~~i~v~NR~ 207 (338)
T PRK00676 176 SLLFIGYSEINRKVAYYLQRQ-GYSRITFCSRQ 207 (338)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
T ss_conf 699986629999999999876-99979998865
No 392
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=79.29 E-value=5.1 Score=20.24 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=37.2
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC-----CCCCCCCCCHHHHHCC--CCEEEEE
Q ss_conf 7999899-877999999998389978999996489802045536660875-----4675455685785213--5504763
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS-----PMGIKFSDNLAMAIQS--VDGIIDF 78 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~-----~~~v~i~~dl~~~~~~--~DViIDF 78 (280)
||.|.|+ |=.|+.+++.+.+... +.+.+++.......-.......... ..++.-..+++.+++. +|+|+.+
T Consensus 3 kILVTGg~GFIGs~Lv~~Ll~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~pD~ViHl 81 (355)
T PRK10217 3 KILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEYQPDCVMHL 81 (355)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 699937875799999999997699-8899982898765254444541278716998005889999999986199889994
Q ss_pred EC
Q ss_conf 10
Q gi|254780279|r 79 SS 80 (280)
Q Consensus 79 T~ 80 (280)
..
T Consensus 82 Aa 83 (355)
T PRK10217 82 AA 83 (355)
T ss_pred CC
T ss_conf 24
No 393
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=79.27 E-value=5.2 Score=20.24 Aligned_cols=56 Identities=21% Similarity=0.493 Sum_probs=26.1
Q ss_pred CEEEECCCCCEEEEEEEECCCCEEEEE----EEEC-CHHHHHHHHHHHH-HHHHC----CCCCCCCHHH
Q ss_conf 013752882057999981899589999----9972-7376799999999-99834----8998368889
Q gi|254780279|r 209 IASLRAGSIVGEHSVVIAGEGESITLS----HSAY-DRRIFARGSLTAA-LWAKS----QIPGLYSMRD 267 (280)
Q Consensus 209 i~s~R~g~~~g~H~V~f~~~~E~i~i~----H~a~-~R~~Fa~Gal~aa-~~l~~----~~~G~y~m~d 267 (280)
++.++.++ | +.|..-++|.-+-|. |-+. =--+|+.=+|-+. .|... .++|+|.+-.
T Consensus 322 v~~y~l~d--G-r~i~lLaeGRLVNLa~a~GHP~eVMd~SFa~QaLa~~~l~~~~~~~~l~~~V~~lP~ 387 (430)
T pfam05221 322 VDRYTLPN--G-RRIILLAEGRLLNLGCATGHPSFVMSNSFTNQVLAQIELWTKRDTGKYEVGVYVLPK 387 (430)
T ss_pred CEEEECCC--C-CEEEEEECCCEEEECCCCCCCHHHEEHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH
T ss_conf 32899189--9-989999536788853788997575122479999999999868652104897687888
No 394
>TIGR01751 crot-CoA-red crotonyl-CoA reductase; InterPro: IPR010085 Crotonyl-CoA reductase is responsible for the conversion of crotonyl-CoA to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate , . In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae ..
Probab=79.14 E-value=1.2 Score=24.53 Aligned_cols=101 Identities=18% Similarity=0.256 Sum_probs=56.0
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC---CCH--HHHH-----------
Q ss_conf 7999899-8779999999983899789999964898020455366608754675455---685--7852-----------
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS---DNL--AMAI----------- 69 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~---~dl--~~~~----------- 69 (280)
.|.|-|| |=+|.+-++.....-.. =+++++.++.......+|...-+...+.... +|. .+..
T Consensus 200 ~VLIWGAaGGLGs~A~Ql~~a~Gg~-Pv~VVSSp~kae~~r~lGA~~~i~R~d~~~~grlpd~Gn~~a~~~w~k~~~~FG 278 (409)
T TIGR01751 200 NVLIWGAAGGLGSYAIQLARAGGGI-PVAVVSSPDKAEYARELGAKAVIDRQDFGHWGRLPDVGNSEAVKEWTKEVKRFG 278 (409)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3798426662568999999954895-289846778999998759808980542587778877788156888988899987
Q ss_pred ----------CCCCEEEEEECCCHHHHHHHHHHHCCCEEEE-EECCCCHH
Q ss_conf ----------1355047631010247888764323721576-50222313
Q gi|254780279|r 70 ----------QSVDGIIDFSSPALTLQSLNISAQHNIVHII-GTTGFSVK 108 (280)
Q Consensus 70 ----------~~~DViIDFT~P~~~~~~~~~a~~~g~~vVi-GTTG~~~e 108 (280)
+++|+|++=+=-+.+.-=+-.|.+-|.=+++ |||||+-+
T Consensus 279 ~~i~~~~G~~ed~~iVfEH~G~~TFp~Sv~~~~rgGmVViCggTtGY~~~ 328 (409)
T TIGR01751 279 KAIWEVLGEKEDPDIVFEHSGRATFPVSVFVVRRGGMVVICGGTTGYNHD 328 (409)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEECCCEEEEECCCCCCCCC
T ss_conf 89999807842763678558830117258998258879995787740114
No 395
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=78.94 E-value=5.3 Score=20.17 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=47.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEECCCHH
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521--35504763101024
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSSPALT 84 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~P~~~ 84 (280)
||-|+|.-.-|+.+++.+... ++-+..+-.... ....+. .....+..-.+.+...++ +++.|||.|+|=+.
T Consensus 3 ~IlilgGT~Egr~la~~L~~~-~~~~s~ag~~~~----~~~~~~--~i~~G~~~~~~~l~~~l~~~~i~~VIDATHPfA~ 75 (241)
T PRK08057 3 RILLLGGTSEARALARALAPD-DTVTSLAGRTLK----PADLPG--PVRVGGFGGAEGLAAYLREEGIDLVVDATHPYAA 75 (241)
T ss_pred EEEEEECHHHHHHHHHHHHCC-CEEEEEEEECCC----CCCCCC--CEEECCCCCHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 599996708999999997489-989998530255----656887--6798888999999999996799899989997089
Q ss_pred ---HHHHHHHHHCCCEEEE
Q ss_conf ---7888764323721576
Q gi|254780279|r 85 ---LQSLNISAQHNIVHII 100 (280)
Q Consensus 85 ---~~~~~~a~~~g~~vVi 100 (280)
....+.|.+.|+|.+=
T Consensus 76 ~is~~a~~a~~~~~ipylR 94 (241)
T PRK08057 76 QISANAAAACRALGIPYLR 94 (241)
T ss_pred HHHHHHHHHHHHHCCEEEE
T ss_conf 9999999999986970799
No 396
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=78.83 E-value=5.3 Score=20.15 Aligned_cols=95 Identities=18% Similarity=0.268 Sum_probs=47.3
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC--CCHHHHCCCCCC-----CCCCCCCHHHHHC--CCCEEEE
Q ss_conf 999899-87799999999838997899999648980204--553666087546-----7545568578521--3550476
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIG--QDVGNFVGISPM-----GIKFSDNLAMAIQ--SVDGIID 77 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g--~d~~~~~~~~~~-----~v~i~~dl~~~~~--~~DViID 77 (280)
|.|.|+ |=.|+.+++.+.+...-+ +.++++....... +.+......... ++.-.+.+..+++ .+|+|+-
T Consensus 1 ILVTGGaGFIGS~Lv~~Ll~~g~~~-v~v~d~~~~~~~~~~~~l~~~~~~~~~~~~~~DI~D~~~l~~~~~~~~~D~V~H 79 (280)
T pfam02719 1 VLVTGGGGSIGSELCRQILKFNPKK-IILFSRDEFKLYEIEQELREEYNDPKLRFFIGDVRDRERLERAMEEYGVDTVFH 79 (280)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 7997488679999999999689988-999908874277899998862678983899811689899999987549999998
Q ss_pred EEC----------CC--------HHHHHHHHHHHCCCE-EEEEEC
Q ss_conf 310----------10--------247888764323721-576502
Q gi|254780279|r 78 FSS----------PA--------LTLQSLNISAQHNIV-HIIGTT 103 (280)
Q Consensus 78 FT~----------P~--------~~~~~~~~a~~~g~~-vViGTT 103 (280)
+.. |. ++...++.|.+++++ +|..+|
T Consensus 80 lAA~~~V~~s~~~P~~~~~~Nv~gT~nlLe~a~~~~vk~~v~~ST 124 (280)
T pfam02719 80 AAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIENGVEKFVLIST 124 (280)
T ss_pred CHHHCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 103116532766999999887277799998888539624551476
No 397
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=78.80 E-value=5.3 Score=20.14 Aligned_cols=96 Identities=11% Similarity=0.126 Sum_probs=48.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH-------------HHCCCHHHH-----CCCCC-CCCCCC-C-C
Q ss_conf 3799989987799999999838997899999648980-------------204553666-----08754-675455-6-8
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP-------------LIGQDVGNF-----VGISP-MGIKFS-D-N 64 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~-------------~~g~d~~~~-----~~~~~-~~v~i~-~-d 64 (280)
-||.|+|+|-+|.++++.+.. .++.-+.++|...-. .+|+.-.+. ....+ ..+.+. . .
T Consensus 20 s~Vli~G~~glg~Ei~Knlvl-~Gv~~i~i~D~~~v~~~dl~~qf~~~~~dvg~~ra~~~~~~l~~lNp~v~v~~~~~~~ 98 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLIL-AGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGPL 98 (286)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 929999987639999999997-3996599995996886776347225777857888999999999648982589635777
Q ss_pred HHHHHCCCCEEEEEEC-CCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 5785213550476310-1024788876432372157650
Q gi|254780279|r 65 LAMAIQSVDGIIDFSS-PALTLQSLNISAQHNIVHIIGT 102 (280)
Q Consensus 65 l~~~~~~~DViIDFT~-P~~~~~~~~~a~~~g~~vViGT 102 (280)
.++.+.++|+||--.. .+.....-+.|.+++++++.+-
T Consensus 99 ~~~~~~~fdvVv~t~~~~~~~~~iN~~cR~~~i~Fi~~~ 137 (286)
T cd01491 99 TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 888853888899918998999999888877598199950
No 398
>PRK10651 transcriptional regulator NarL; Provisional
Probab=78.68 E-value=5.4 Score=20.12 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=58.4
Q ss_pred CC-CCCEEEEEECCCH-HHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCE-EEE
Q ss_conf 99-8873799989987-79999999983899789999964898020455366608754675455685785213550-476
Q gi|254780279|r 1 MH-QSPMRISVLGGGR-MGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDG-IID 77 (280)
Q Consensus 1 M~-~~~IkV~I~GaGk-MG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DV-iID 77 (280)
|+ +.|+||.|+--=. +-..+...+...+++++++..... .+.-+.. .-..+|+ ++|
T Consensus 1 m~~~~pirVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~------~ea~~~~---------------~~~~pDlvllD 59 (216)
T PRK10651 1 MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNG------EQGIELA---------------ESLDPDLILLD 59 (216)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCH------HHHHHHH---------------HHCCCCEEEEE
T ss_conf 98999978999839999999999999758993899998999------9999998---------------70799999995
Q ss_pred EECCCHH-HHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 3101024-78887643237--215765022231358999874035552100001156
Q gi|254780279|r 78 FSSPALT-LQSLNISAQHN--IVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 78 FT~P~~~-~~~~~~a~~~g--~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280)
...|+.. .+.++...+.. .++|+ -|++++++ ...+.+...+--++.-+++..
T Consensus 60 l~lp~~~G~~~~~~l~~~~~~~~iiv-lt~~~~~~-~~~~al~~Ga~gyl~K~~~~~ 114 (216)
T PRK10651 60 LNMPGMNGLETLDKLREKSLSGRIVV-FSVSNHEE-DVVTALKRGADGYLLKDMEPE 114 (216)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEE-EECCCCHH-HHHHHHHCCCCEEEECCCCHH
T ss_conf 99999888764232334578874676-30554188-999999669878983789999
No 399
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=78.25 E-value=5.5 Score=20.04 Aligned_cols=107 Identities=10% Similarity=0.154 Sum_probs=52.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCC--CCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 37999899877999999998389978999996489802045536660875467--5455685785213550476310102
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMG--IKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~--v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
-++.|+|+|=++|+++-.+.+..--++ .++.|+..+ .+.+.+..+..... .....+++.. ..+|++|..|+...
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i-~V~NRt~~r--a~~La~~~~~~~~~~~~~~~~~~~~~-~~~dliINaTp~Gm 202 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRI-TVVNRTRER--AEELADLFGELGAAVEAAALADLEGL-EEADLLINATPVGM 202 (283)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEE-EEEECCHHH--HHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCEEEECCCCCC
T ss_conf 889998976899999999998699879-999588899--99999986450563110245541235-54578997887877
Q ss_pred HHH----HHH-HHHHCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 478----887-64323721576502223135899987403
Q gi|254780279|r 84 TLQ----SLN-ISAQHNIVHIIGTTGFSVKENEVISSFAR 118 (280)
Q Consensus 84 ~~~----~~~-~a~~~g~~vViGTTG~~~e~~~~l~~~s~ 118 (280)
... .+. .++. ..++|. =-=|.+.+-..|+.+.+
T Consensus 203 ~~~~~~~~~~~~~l~-~~~~v~-D~vY~P~~TplL~~A~~ 240 (283)
T COG0169 203 AGPEGDSPVPAELLP-KGAIVY-DVVYNPLETPLLREARA 240 (283)
T ss_pred CCCCCCCCCCHHHCC-CCCEEE-EECCCCCCCHHHHHHHH
T ss_conf 788788888677668-677899-81118878889999998
No 400
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=77.83 E-value=5.7 Score=19.96 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=48.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC-CCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC--CCEEEEEECCCH
Q ss_conf 799989987799999999838997899999648-98020455366608754675455685785213--550476310102
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRS-GSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS--VDGIIDFSSPAL 83 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~-~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~--~DViIDFT~P~~ 83 (280)
.|||+|.|-+|+|++.+... =++.+. +++.+ +++ ...+.+ -.|+.-|+.|+.
T Consensus 1 ~vGilGGGQLG~M~~~aA~~-LG~~~~-VL~~~~~~P-----------------------A~q~Ad~~~~v~a~~~d~~~ 55 (386)
T TIGR01161 1 TVGILGGGQLGRMLALAAKK-LGIKVA-VLDPDANSP-----------------------AKQVADSREHVLASFTDPEA 55 (386)
T ss_pred CEEEEECCHHHHHHHHHHHH-CCCEEE-EECCCCCCC-----------------------CCCCCCCCCEEEEEECCHHH
T ss_conf 96897188489999998712-795899-854898973-----------------------11128985579985148789
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC---CCCEECCCHHHHHHHHHHHHH
Q ss_conf 478887643237215765022231358999874035---552100001156899999999
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN---APIVKSSNMSLGINFLGFLVE 140 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~---~~il~apN~SiGv~ll~~l~~ 140 (280)
..+.++.| -+| |.=|--=+.+.|+++... .++. ||-..=.-+.-|+.+
T Consensus 56 i~~La~~c-----Dvi--T~E~Ehv~~~~L~~L~~~g~~~~~~--P~~~~l~~~~dk~~q 106 (386)
T TIGR01161 56 IRELAEAC-----DVI--TFEFEHVDVEALEKLEARGDKVKVR--PSPEALAIIQDKLTQ 106 (386)
T ss_pred HHHHHHHC-----CEE--EEEECCCCCHHHHHHHHCCCEEEEE--CCHHHHHHHHCHHHH
T ss_conf 99999765-----655--4310137856789998359847760--388999988365899
No 401
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=77.51 E-value=5.8 Score=19.89 Aligned_cols=155 Identities=13% Similarity=0.128 Sum_probs=78.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCC-CCE--EEEEEECCCCHH-----HCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 37999899-877999999998389-978--999996489802-----045536660875467545568578521355047
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNP-SIT--LHSIIVRSGSPL-----IGQDVGNFVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~-~~e--Lv~~i~~~~~~~-----~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
|||+++|+ +.-...++.-+.+.. .+. -+...|-+..+. +.+...+..+ .+..+..+.|.+++++.+|-||
T Consensus 1 mKI~iIGaGS~~t~~li~~l~~~~~~l~~~ei~L~DId~~rL~~~~~la~~~~~~~g-~~~~i~~ttdr~eAL~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENY-PEIKFVYTTDPEEAFTDADFVF 79 (437)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHCCCCEEE
T ss_conf 969998984687799999998282006988899977999999999999999998529-9817999679999857999999
Q ss_pred EEECCCHH---HHHHHHHHHCCCEEEEE--ECCCC---H--HHH-------HHHHHHHCCCCCEECCCHHHHHHHHHHHH
Q ss_conf 63101024---78887643237215765--02223---1--358-------99987403555210000115689999999
Q gi|254780279|r 77 DFSSPALT---LQSLNISAQHNIVHIIG--TTGFS---V--KEN-------EVISSFARNAPIVKSSNMSLGINFLGFLV 139 (280)
Q Consensus 77 DFT~P~~~---~~~~~~a~~~g~~vViG--TTG~~---~--e~~-------~~l~~~s~~~~il~apN~SiGv~ll~~l~ 139 (280)
---.+... ..-.+..+++|+ +| |||-. . -.+ +.++++|-++ |-=|||==+.++...+
T Consensus 80 ~~irvGg~~~r~~De~Ip~kyGi---vgqeT~G~GGi~~alRtiPv~ldia~di~e~cP~A---wliNytNP~~~vt~al 153 (437)
T cd05298 80 AQIRVGGYAMREQDEKIPLKHGV---VGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDA---WILNYSNPAAIVAEAL 153 (437)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC---CCCCCCCCCHHHEEEEEHHHHHHHHHHHHHHCCCC---EEEECCCHHHHHHHHH
T ss_conf 96652683267888767987597---76015664622401144999999999999879992---8997578789999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99998611566600899998641678998678999999998
Q gi|254780279|r 140 ETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIA 180 (280)
Q Consensus 140 ~~~a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~ 180 (280)
. +.++ ++.++=.- |.|.||...+++.+.
T Consensus 154 ~---~~~~-----~~k~vGLC-----h~~~~~~~~la~~Lg 181 (437)
T cd05298 154 R---RLFP-----NARILNIC-----DMPIAIMDSMAAILG 181 (437)
T ss_pred H---HHCC-----CCCEEEEC-----CCHHHHHHHHHHHHC
T ss_conf 9---7489-----99889889-----788999999999958
No 402
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=77.48 E-value=4.9 Score=20.40 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=100.5
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCH--HHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEEC
Q ss_conf 3799989-987799999999838997899999648980204553--6660875467545568578521--3550476310
Q gi|254780279|r 6 MRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDV--GNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFSS 80 (280)
Q Consensus 6 IkV~I~G-aGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~--~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT~ 80 (280)
|+|.|.| +|-.|+..+.++.+ .+.+++-.-...++....-.. +.| ...++.-..-+.+++. ++|.||.|.-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vvV~DNL~~g~~~~v~~~~~~f---~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVVVLDNLSNGHKIALLKLQFKF---YEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHCCCCE---EEECCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 9299965865468999999997-89848999568878888860204856---8833431999999998649988998730
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10247888764323721576502223135899987403555210000115689999999999986115666008999986
Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMH 160 (280)
Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI~E~H 160 (280)
-..+-|-.+.-+++=-+=|.||-.+ ++.+++..- ..++.|+ .|+-| +..-.+-|.|.|
T Consensus 77 ~~~VgESv~~Pl~Yy~NNv~gTl~L----l~am~~~gv-~~~vFSS--------------tAavY---G~p~~~Pi~E~~ 134 (329)
T COG1087 77 SISVGESVQNPLKYYDNNVVGTLNL----IEAMLQTGV-KKFIFSS--------------TAAVY---GEPTTSPISETS 134 (329)
T ss_pred CCCCCHHHHCHHHHHHHCHHHHHHH----HHHHHHHCC-CEEEEEC--------------CCHHC---CCCCCCCCCCCC
T ss_conf 0432344418788886030869999----999998299-7699924--------------30103---899876647888
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC---------CCCCCCCCCCCCC---CCCEEEECCCCCEEEEEEEECC
Q ss_conf 416789986789999999985328876422111---------2357676543345---6501375288205799998189
Q gi|254780279|r 161 HRRKLDSPSGTALLLGEAIANGRKVNLTDHMVL---------NRHIQQCARTEGS---IGIASLRAGSIVGEHSVVIAGE 228 (280)
Q Consensus 161 H~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---I~i~s~R~g~~~g~H~V~f~~~ 228 (280)
-.. .-.|=|..+.+.|.|-.-..+.-....+. ...|.-|++..++ |++-..-+=+- =++--+|+.+
T Consensus 135 ~~~-p~NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~-r~~l~ifG~D 212 (329)
T COG1087 135 PLA-PINPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGK-RDKLFIFGDD 212 (329)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 889-98853157999999999998716972899985133567988766779999336889999998468-8655784898
Q ss_pred CCEE---EEEEEECCHHHHHHHHHHHHHHHHC
Q ss_conf 9589---9999972737679999999999834
Q gi|254780279|r 229 GESI---TLSHSAYDRRIFARGSLTAALWAKS 257 (280)
Q Consensus 229 ~E~i---~i~H~a~~R~~Fa~Gal~aa~~l~~ 257 (280)
..+- -|| +=+.-.=.|.+=++|.+||..
T Consensus 213 Y~T~DGT~iR-DYIHV~DLA~aHv~Al~~L~~ 243 (329)
T COG1087 213 YDTKDGTCIR-DYIHVDDLADAHVLALKYLKE 243 (329)
T ss_pred CCCCCCCEEE-EEEEHHHHHHHHHHHHHHHHH
T ss_conf 9999987022-343246679999999999981
No 403
>PRK12862 malic enzyme; Reviewed
Probab=77.48 E-value=5.8 Score=19.89 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=52.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHCCCHH--HH--CCCCCCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 73799989987799999999838997--8999996489802045536--66--087546754556857852135504763
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSI--TLHSIIVRSGSPLIGQDVG--NF--VGISPMGIKFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~--eLv~~i~~~~~~~~g~d~~--~~--~~~~~~~v~i~~dl~~~~~~~DViIDF 78 (280)
.+||.+.|+|--|-++++.+... ++ +=+..+|+++--+.+++-. .. .-....+ ...++++++.+||.|-.
T Consensus 192 ~~kiv~~GaGaa~~a~~~ll~~~-G~~~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~---~~~l~ea~~gADvfig~ 267 (761)
T PRK12862 192 DVKLVASGAGAAALACLDLLVSL-GVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTD---ARTLAEVIEGADVFLGL 267 (761)
T ss_pred HEEEEEECCCHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCC---CCCHHHHHCCCCEEEEC
T ss_conf 71899978878899999999983-998101799946787778877430799999965079---66599996689889980
Q ss_pred ECCCHH-HHHHHH
Q ss_conf 101024-788876
Q gi|254780279|r 79 SSPALT-LQSLNI 90 (280)
Q Consensus 79 T~P~~~-~~~~~~ 90 (280)
|.|..+ .+.++.
T Consensus 268 S~~~~~~~e~v~~ 280 (761)
T PRK12862 268 SAAGVLKPEMVKK 280 (761)
T ss_pred CCCCCCCHHHHHH
T ss_conf 6899999999985
No 404
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=77.27 E-value=5.9 Score=19.85 Aligned_cols=207 Identities=19% Similarity=0.339 Sum_probs=103.7
Q ss_pred EEEEC-CCHHHHHHHHHHHHCC-CCEEEEEEECCC-CHHH---CCCHHH---HCCCCCCCCCCCCCHH---------H--
Q ss_conf 99989-9877999999998389-978999996489-8020---455366---6087546754556857---------8--
Q gi|254780279|r 8 ISVLG-GGRMGQALIKEIHNNP-SITLHSIIVRSG-SPLI---GQDVGN---FVGISPMGIKFSDNLA---------M-- 67 (280)
Q Consensus 8 V~I~G-aGkMG~~ii~~i~~~~-~~eLv~~i~~~~-~~~~---g~d~~~---~~~~~~~~v~i~~dl~---------~-- 67 (280)
|.|.| ||=.|+.++..+.+.. ..++..+=.-.+ ..+. -+.+|. +.+.. +..|++++. .
T Consensus 1 IiVTGGAGFIGSNlv~~LN~~gP~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~--~~~I~d~i~k~~~~~~l~~~~ 78 (353)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGPETDILVVDNLRDDATFENGNPQSLGHFKKFLNLA--DLEIADYIDKDDLLDRLEKGS 78 (353)
T ss_pred CEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCC--CCHHHCCCCCHHHHHHHHHCC
T ss_conf 955067636899999999643895428887407875524677743223424432555--411213358854699998302
Q ss_pred -HHCCCCEEEE-------------E---ECCCHHHHHHHHHHHCCCEEEEEEC---------CCCHHH-HHHHHHHHCCC
Q ss_conf -5213550476-------------3---1010247888764323721576502---------223135-89998740355
Q gi|254780279|r 68 -AIQSVDGIID-------------F---SSPALTLQSLNISAQHNIVHIIGTT---------GFSVKE-NEVISSFARNA 120 (280)
Q Consensus 68 -~~~~~DViID-------------F---T~P~~~~~~~~~a~~~g~~vViGTT---------G~~~e~-~~~l~~~s~~~ 120 (280)
.+.++|+|+= | |+=..+...+++|.++++|+|=+++ +|.++. .+.|+++ -
T Consensus 79 ~~~~~~~avfH~GAcS~TTe~D~~~~m~nN~~ys~~Ll~~c~~~~~~~IYASSAatYG~~~~~f~~~~~~e~L~kL---r 155 (353)
T TIGR02197 79 EALGKIEAVFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGVPFIYASSAATYGDGEAGFREDRELEELQKL---R 155 (353)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCCCHHHHHHC---C
T ss_conf 0138833799733125358862799998899999999999996489868850312107687777766565889751---8
Q ss_pred CC-EECCCHHHHHHHHHHHHH-HHHH--HHC----CCCCCHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 52-100001156899999999-9998--611----56660089-999864167899867899999999853288764221
Q gi|254780279|r 121 PI-VKSSNMSLGINFLGFLVE-TAAE--YLL----PAKDWDFE-ILEMHHRRKLDSPSGTALLLGEAIANGRKVNLTDHM 191 (280)
Q Consensus 121 ~i-l~apN~SiGv~ll~~l~~-~~a~--~l~----~~~~~die-I~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~ 191 (280)
|. +| =+|.= ||-+.++ .+.+ ..+ -...|+|- =-|. |+.+= .==|..+...+.+.+...+.
T Consensus 156 PlN~Y--GySK~--lFD~~v~~~~~~~~~~~~q~~GLrYFNVYGP~E~-HKG~M---ASv~f~~~~q~~~~~~v~LF--- 224 (353)
T TIGR02197 156 PLNVY--GYSKF--LFDQYVRRRVLPGEALSAQVVGLRYFNVYGPREY-HKGKM---ASVAFHLFNQIKAGGNVKLF--- 224 (353)
T ss_pred CCCCC--HHHHH--HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC-CCCCH---HHHHHHHHHHHHHCCCCCCC---
T ss_conf 78861--22167--8989999986012479864241021134688867-54436---99999988899737882023---
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC--CCCCCCH
Q ss_conf 1123576765433456501375288205799998189958999999727376799999999998348--9983688
Q gi|254780279|r 192 VLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFARGSLTAALWAKSQ--IPGLYSM 265 (280)
Q Consensus 192 ~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~~R~~Fa~Gal~aa~~l~~~--~~G~y~m 265 (280)
.+-+.+=--|+|.=-| +|..=++.+..|+... ..|+|++
T Consensus 225 ------------------~~~~~~~~dGeQ~RDF-----------------VYV~DV~~~n~~~~~~~~~SGifN~ 265 (353)
T TIGR02197 225 ------------------KSHKEGFKDGEQLRDF-----------------VYVKDVVKVNLWLLENPSKSGIFNV 265 (353)
T ss_pred ------------------CCCCCCCCCCCCCCCC-----------------EEHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf ------------------5668589887811011-----------------5527699999999848898415644
No 405
>KOG0022 consensus
Probab=77.01 E-value=6 Score=19.80 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=54.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HCCCHHHHCCCCCC--CCCCCCCHHHHHC-CCCEEEEEE-CC
Q ss_conf 7999899877999999998389978999996489802-04553666087546--7545568578521-355047631-01
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-IGQDVGNFVGISPM--GIKFSDNLAMAIQ-SVDGIIDFS-SP 81 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-~g~d~~~~~~~~~~--~v~i~~dl~~~~~-~~DViIDFT-~P 81 (280)
-++|.|.|-.|-++++-.....--.+.|+ |-++.++ .++.+|.-.-+++. .-++..-+.+.-+ .+|.-.|++ ++
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgv-DiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~ 273 (375)
T KOG0022 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGV-DINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV 273 (375)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCCEEEE-ECCHHHHHHHHHCCCCEECCHHHCCCCHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 79999054578899876776186517998-55878989987619502237033053399999998668720899955898
Q ss_pred CHHHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf 0247888764323-721576502223
Q gi|254780279|r 82 ALTLQSLNISAQH-NIVHIIGTTGFS 106 (280)
Q Consensus 82 ~~~~~~~~~a~~~-g~~vViGTTG~~ 106 (280)
+...+-++.|-+- |+.+|+|...-.
T Consensus 274 ~~m~~al~s~h~GwG~sv~iGv~~a~ 299 (375)
T KOG0022 274 STMRAALESCHKGWGKSVVIGVAAAG 299 (375)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 99999999730587759999754788
No 406
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=76.93 E-value=5.9 Score=19.85 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=26.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 379998998779999999983899789999964898
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS 41 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~ 41 (280)
|||+|+|+|=+|-+.+-.+.+ .+.+ |.++|+...
T Consensus 1 m~VvIIGaGi~G~stA~~La~-~G~~-V~vler~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVVGVTSAWYLAR-AGHE-VTVIDRQPG 34 (416)
T ss_pred CEEEEECCHHHHHHHHHHHHH-CCCC-EEEEECCCC
T ss_conf 979999944999999999996-8996-899969999
No 407
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.89 E-value=6 Score=19.78 Aligned_cols=111 Identities=11% Similarity=0.135 Sum_probs=47.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH--HHCCCHHHHCCC-CCCCCCC-----CCCHHHHHCCCCEEEE
Q ss_conf 3799989987799999999838997899999648980--204553666087-5467545-----5685785213550476
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP--LIGQDVGNFVGI-SPMGIKF-----SDNLAMAIQSVDGIID 77 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~--~~g~d~~~~~~~-~~~~v~i-----~~dl~~~~~~~DViID 77 (280)
-+|.|+|+|-.+++++-.+... +..-+.++.|+... ...+....+... ....+.+ .+.+.+.+..+|++|.
T Consensus 127 k~vlIlGaGGaa~ai~~~l~~~-g~~~i~i~nr~~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIN 205 (289)
T PRK12548 127 KKLTIIGAGGAATAIQVQCALD-GAKEITIFNIKDDFYERAEQTVAKIKEEVPACIVHVYDLNDTEKLNAEIATSDILVN 205 (289)
T ss_pred CEEEEEECCHHHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEE
T ss_conf 7479995216799999999976-998899996881488999999999984587764798514316666554322674453
Q ss_pred EECCCHH-----HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 3101024-----7888764323721576502223135899987403
Q gi|254780279|r 78 FSSPALT-----LQSLNISAQHNIVHIIGTTGFSVKENEVISSFAR 118 (280)
Q Consensus 78 FT~P~~~-----~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~ 118 (280)
.|+.... ....... ..+...++--.-|++.+-..++.+.+
T Consensus 206 aT~~Gm~p~~~~~~~~~~~-~~~~~~~v~D~vY~P~~T~ll~~A~~ 250 (289)
T PRK12548 206 ATLVGMHPNEDETPIKDTS-VFRKDLVVADTVYNPKKTKLLEDAEA 250 (289)
T ss_pred CCCCCCCCCCCCCCCCCHH-HCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 3565668775568887866-73889789983138847899999998
No 408
>PRK07045 putative monooxygenase; Reviewed
Probab=76.67 E-value=3.5 Score=21.43 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=29.7
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 9988737999899877999999998389978999996489
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSG 40 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~ 40 (280)
|.++|++|.|+|+|=-|-+++-.+. ..++.++ ++++..
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~-r~G~~v~-v~E~~~ 38 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLG-ARGHSVT-VVERAA 38 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHH-HCCCCEE-EEECCC
T ss_conf 9989985899992889999999998-6799899-990899
No 409
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=76.51 E-value=6.2 Score=19.71 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=36.0
Q ss_pred HCCCCEEEEEECCCH---HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 213550476310102---47888764323721576502223135899987403555
Q gi|254780279|r 69 IQSVDGIIDFSSPAL---TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAP 121 (280)
Q Consensus 69 ~~~~DViIDFT~P~~---~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~ 121 (280)
+.+-||+|=+|.... +.+.++.|.++|.++| +-|+..+..+..+-+..=.+|
T Consensus 70 i~~~Dv~I~iS~SGeT~e~~~~~~~aK~~ga~ii-~IT~~~~S~Lak~aD~~l~ip 124 (179)
T TIGR03127 70 IKKGDLLIAISGSGETESLVTVAKKAKEIGATVA-AITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE-EEECCCCCHHHHHCCEEEEEC
T ss_conf 9999999998199996899999999998799299-997989897799499999906
No 410
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=76.10 E-value=6.3 Score=19.64 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=68.9
Q ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC-CCHHH--HCCCCCCCCCCCCCHHH--HHCCCCEEEEEEC
Q ss_conf 999899--87799999999838997899999648980204-55366--60875467545568578--5213550476310
Q gi|254780279|r 8 ISVLGG--GRMGQALIKEIHNNPSITLHSIIVRSGSPLIG-QDVGN--FVGISPMGIKFSDNLAM--AIQSVDGIIDFSS 80 (280)
Q Consensus 8 V~I~Ga--GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g-~d~~~--~~~~~~~~v~i~~dl~~--~~~~~DViIDFT~ 80 (280)
|.|.|+ |=+|+.+++.+.+ .+.+++ ++.|+..+... ..... .......+..+ .... .++.+|+||--+=
T Consensus 1 ~litGgnTGfiG~~L~~~L~~-~g~~V~-~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~W~~l~~~DaviNLAG 76 (307)
T TIGR01777 1 ILITGGNTGFIGRALTQRLTK-SGHEVT-ILTRSPQAESNTKKVGYKNWLAEGKLGIVI--AESGWSALEGADAVINLAG 76 (307)
T ss_pred CEECCCCCCHHHHHHHHHHHH-CCCEEE-EEEECCCCCCCHHCCCCCCCCCCCCCCCCC--CHHCCCCCCCCCEEEECCC
T ss_conf 964153302378999999984-799899-996168643200025544555522124520--7220566788627985568
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECC--CCHHHHHHHHHH--HCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 102478887643237215765022--231358999874--0355521000011568999999999998611566600899
Q gi|254780279|r 81 PALTLQSLNISAQHNIVHIIGTTG--FSVKENEVISSF--ARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEI 156 (280)
Q Consensus 81 P~~~~~~~~~a~~~g~~vViGTTG--~~~e~~~~l~~~--s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~~~dieI 156 (280)
-..... -++--+++..+. .+= -|..-.+.|+++ +++.|=++-+==.+|. . +++=|-++
T Consensus 77 ~~i~~P-~RWt~~~K~~i~--~SRi~~T~~L~~~i~~~~r~~~~P~~~isaSAvGy-------------Y--G~~~~~~~ 138 (307)
T TIGR01777 77 EPIADP-KRWTEERKQEIR--DSRIDTTRALVEAIAAAPRAEQKPKVFISASAVGY-------------Y--GHSEDRVF 138 (307)
T ss_pred CCCCCC-CCCCHHHHHHHH--HCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE-------------E--CCCCCCEE
T ss_conf 885778-887877757565--23347899999999846566788716885016663-------------0--68998215
Q ss_pred HHHH-HHCCCCCCCHHHHHH
Q ss_conf 9986-416789986789999
Q gi|254780279|r 157 LEMH-HRRKLDSPSGTALLL 175 (280)
Q Consensus 157 ~E~H-H~~K~DaPSGTA~~l 175 (280)
+|.+ -..+-|-=|.++..=
T Consensus 139 tE~~~~~~~ddFla~lc~~W 158 (307)
T TIGR01777 139 TEEDASGPGDDFLAELCRDW 158 (307)
T ss_pred ECCCCCCCCCCCHHHHHHHH
T ss_conf 11667888777218999999
No 411
>KOG1221 consensus
Probab=76.03 E-value=6.3 Score=19.63 Aligned_cols=43 Identities=23% Similarity=0.480 Sum_probs=31.8
Q ss_pred EEEEECC-CHHHHHHHHHHH-HCCCCEEEEEEECCCCHHHCCCHHHHC
Q ss_conf 7999899-877999999998-389978999996489802045536660
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIH-NNPSITLHSIIVRSGSPLIGQDVGNFV 52 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~-~~~~~eLv~~i~~~~~~~~g~d~~~~~ 52 (280)
.|-|.|+ |=+|+.+++.+. ..+++.-+...-|.+. |+++.+..
T Consensus 14 ~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~---g~~~~~Rl 58 (467)
T KOG1221 14 TIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKK---GKAAQERL 58 (467)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC---CCCHHHHH
T ss_conf 5999727634578999999850767656999983478---98778999
No 412
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=75.86 E-value=4.5 Score=20.64 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=17.0
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 35504763101024788876432372157650222
Q gi|254780279|r 71 SVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 71 ~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~ 105 (280)
-+|+|+==+...... .+.|...++|+|=|-|..
T Consensus 100 ~~D~Iv~R~~~~~~~--~~~a~~s~vPVINg~~~~ 132 (334)
T PRK03515 100 MYDGIQYRGYGQEIV--ETLAEYAGVPVWNGLTNE 132 (334)
T ss_pred CCCEEEEECCCHHHH--HHHHHHCCCCEEECCCCC
T ss_conf 188799967554899--999987698766489888
No 413
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=75.15 E-value=4.8 Score=20.45 Aligned_cols=154 Identities=23% Similarity=0.319 Sum_probs=74.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC-CCCEEEEEECCCHHH
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521-355047631010247
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ-SVDGIIDFSSPALTL 85 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~-~~DViIDFT~P~~~~ 85 (280)
||+|.|.|=||--|+..-.... .-|.--+|+.+. |+ ..++. ..|.+ --..-.
T Consensus 309 ~vgvLGGGLMGGGIa~VTatkA-----------g~PvRiKDIn~~------Gi------~~AL~Y~~~~L----~k~vkr 361 (732)
T TIGR02440 309 KVGVLGGGLMGGGIASVTATKA-----------GIPVRIKDINPQ------GI------NNALKYAWKLL----DKKVKR 361 (732)
T ss_pred EEEEECCCCCCCCCCCHHHCCC-----------CCCEEEEECCHH------HH------HHHHHHHHHHH----CCCCCC
T ss_conf 3367347645663011322027-----------884488634965------67------68987859872----684000
Q ss_pred HHH-HHHHHCCCEEEEEEC---CCCH---------HHH-------HHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHH-
Q ss_conf 888-764323721576502---2231---------358-------9998740355521000011568999999999998-
Q gi|254780279|r 86 QSL-NISAQHNIVHIIGTT---GFSV---------KEN-------EVISSFARNAPIVKSSNMSLGINFLGFLVETAAE- 144 (280)
Q Consensus 86 ~~~-~~a~~~g~~vViGTT---G~~~---------e~~-------~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~- 144 (280)
.++ ....++..-+++||| ||.. |++ +.+++-+-.-+ +.|+|+|==- ..+++..|.|
T Consensus 362 r~~~~~e~~~~m~li~g~T~y~Gf~~~D~vvEAVFEdl~LK~QMV~diE~~~~~hT-IFASNTSSLP--I~qIAa~A~RP 438 (732)
T TIGR02440 362 RHMKPAERDNQMALITGTTDYRGFKDVDIVVEAVFEDLELKHQMVKDIERECAAHT-IFASNTSSLP--IGQIAAAAERP 438 (732)
T ss_pred CCCCHHHHCCCEEEEECCCCCCCEECCCEEEEEEECCHHHHHHHHHHHHHCCCCEE-EEEECCCCCC--HHHHHHHCCCC
T ss_conf 01564563241354333632122001446998760350212337899961567703-5531444687--78999840497
Q ss_pred -------HHCC-CCCCHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -------6115-66600899998641678998678-9999999985328876422111
Q gi|254780279|r 145 -------YLLP-AKDWDFEILEMHHRRKLDSPSGT-ALLLGEAIANGRKVNLTDHMVL 193 (280)
Q Consensus 145 -------~l~~-~~~~dieI~E~HH~~K~DaPSGT-A~~la~~i~~~~~~~~~~~~~~ 193 (280)
||+| .+.+=||||= |.+=..- |.| +-.+|-.++=+|+.-....++.
T Consensus 439 E~ViGLHYFSPVeKMPLVEvIp--H~~TenG-satS~~TIATtValA~KQGKTpIVV~ 493 (732)
T TIGR02440 439 ENVIGLHYFSPVEKMPLVEVIP--HAKTENG-SATSEETIATTVALAKKQGKTPIVVA 493 (732)
T ss_pred CCEECCEECCCCCCCCCEEEEC--CCCCCCC-CCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 5212030007767588557607--8876766-66764579999999850699527873
No 414
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=75.06 E-value=6.7 Score=19.46 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=45.2
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCC-CEEEEEECCCH
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852135-50476310102
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSV-DGIIDFSSPAL 83 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~-DViIDFT~P~~ 83 (280)
|||.|.|+ +-+|+++++.+.+ .+..++ +++|+..+. +.+.+ .+.+. ..+ -+..|.|.++.
T Consensus 1 mnVlITGas~GIG~aiA~~la~-~Ga~V~-i~~r~~~~l--~~~~~-------------~l~~~-g~~~~~~~Dv~~~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLK-KGARVV-ISSRNEENL--EKALK-------------ELKEL-GEVYAIKADLSDKDD 62 (259)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEE-EEECCHHHH--HHHHH-------------HHHHC-CCEEEEEEECCCHHH
T ss_conf 9899975877899999999998-799999-997998999--99999-------------98741-887999963699899
Q ss_pred HHHHHHHHHH--CCCEEEE
Q ss_conf 4788876432--3721576
Q gi|254780279|r 84 TLQSLNISAQ--HNIVHII 100 (280)
Q Consensus 84 ~~~~~~~a~~--~g~~vVi 100 (280)
....++.+.+ -++.+++
T Consensus 63 v~~~v~~~~~~~G~iD~LV 81 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALV 81 (259)
T ss_pred HHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999859988899
No 415
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=74.86 E-value=6.8 Score=19.43 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=45.5
Q ss_pred HHHHHCCCCEEE---EEECCCHH--HHHHHHHHHCCCEEEEEECC---CCHHHHHHHHHHHC--CCC-CEECCCHHHHHH
Q ss_conf 578521355047---63101024--78887643237215765022---23135899987403--555-210000115689
Q gi|254780279|r 65 LAMAIQSVDGII---DFSSPALT--LQSLNISAQHNIVHIIGTTG---FSVKENEVISSFAR--NAP-IVKSSNMSLGIN 133 (280)
Q Consensus 65 l~~~~~~~DViI---DFT~P~~~--~~~~~~a~~~g~~vViGTTG---~~~e~~~~l~~~s~--~~~-il~apN~SiGv~ 133 (280)
+.++++.+|+|+ |...|-.. ....+++.+.++|+++.-+= .+++..+....+-. ..+ ++.+.+-..|+.
T Consensus 6 i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~~~~~~~~~~g~~~i~iSa~~~~g~~ 85 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTK 85 (156)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 99999879999999987889998698999999756993999977555589899999999982899973787012675799
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780279|r 134 FLGFLVET 141 (280)
Q Consensus 134 ll~~l~~~ 141 (280)
.+...++.
T Consensus 86 ~L~~~i~~ 93 (156)
T cd01859 86 ILRRTIKE 93 (156)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 416
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888 The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=74.66 E-value=3.4 Score=21.48 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=38.9
Q ss_pred EEEEEC-CCHHHHHHHHHHH-HCCCCEEEEEEEC---CCCHHHCCCHHHHCCC--CCCCCCCCCCHHHHHC--CCCEEEE
Q ss_conf 799989-9877999999998-3899789999964---8980204553666087--5467545568578521--3550476
Q gi|254780279|r 7 RISVLG-GGRMGQALIKEIH-NNPSITLHSIIVR---SGSPLIGQDVGNFVGI--SPMGIKFSDNLAMAIQ--SVDGIID 77 (280)
Q Consensus 7 kV~I~G-aGkMG~~ii~~i~-~~~~~eLv~~i~~---~~~~~~g~d~~~~~~~--~~~~v~i~~dl~~~~~--~~DViID 77 (280)
|+.|.| ||=.|...++.+. +.+|.+++ .+|. -+++..=+|+.+.... -+.+|.-....+.+++ .+|+||-
T Consensus 1 ~~LVTGGaGFIGsnFvry~~~~~~D~~v~-vlDkLTYAgn~e~L~~l~~~pr~~Fv~GDI~D~~lv~~~~~e~~~D~Vvh 79 (340)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVI-VLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVDRLLKEHDPDAVVH 79 (340)
T ss_pred CCEEECCCCHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 92363278525689999999747995799-86354455786555233239661567423022889988840017677886
Q ss_pred E
Q ss_conf 3
Q gi|254780279|r 78 F 78 (280)
Q Consensus 78 F 78 (280)
|
T Consensus 80 F 80 (340)
T TIGR01181 80 F 80 (340)
T ss_pred C
T ss_conf 2
No 417
>PRK12861 malic enzyme; Reviewed
Probab=74.28 E-value=7 Score=19.33 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=52.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHH-HHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC
Q ss_conf 737999899877999999998389-978999996489802045536-660875467545568578521355047631010
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVG-NFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~-~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~ 82 (280)
.+||.+.|+|--|-++++.+..-. +.+=+..||+++--+.|+.-. +.....-.-..-...+++++..+||.|-.|.|.
T Consensus 187 ~~kiv~~GaGaa~ia~~~l~~~~G~~~~ni~~~D~~G~i~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfiG~S~~~ 266 (762)
T PRK12861 187 EVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPAKERFAQETDARTLAEVIGGADVFLGLSAGG 266 (762)
T ss_pred HEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCC
T ss_conf 61699968778899999999983999555899947785118986535799999985689777999837898899767899
Q ss_pred HH-HHHHH
Q ss_conf 24-78887
Q gi|254780279|r 83 LT-LQSLN 89 (280)
Q Consensus 83 ~~-~~~~~ 89 (280)
.+ .+.++
T Consensus 267 ~~~~~mv~ 274 (762)
T PRK12861 267 VLKAEMLK 274 (762)
T ss_pred CCCHHHHH
T ss_conf 89999998
No 418
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=74.26 E-value=7 Score=19.33 Aligned_cols=77 Identities=22% Similarity=0.335 Sum_probs=51.7
Q ss_pred CHHHCCCHHHHCCCCCCCCCCCCCHHHHHC-CCCEEE-EEEC-----CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf 802045536660875467545568578521-355047-6310-----102478887643237215765022231358999
Q gi|254780279|r 41 SPLIGQDVGNFVGISPMGIKFSDNLAMAIQ-SVDGII-DFSS-----PALTLQSLNISAQHNIVHIIGTTGFSVKENEVI 113 (280)
Q Consensus 41 ~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~-~~DViI-DFT~-----P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l 113 (280)
+...|++.+++.+. ..++++..++++++. .+|++| =..+ |..-...+..|+++|..+|.|---|-.+ ...+
T Consensus 3 ~~~aG~~~~~~~~~-~~~iPi~~sl~eA~~~g~~~liiGiA~~GG~lp~~w~~~i~~Ai~~GldIvsGLH~~L~d-dp~l 80 (302)
T pfam07755 3 SRKAGKDAGEVLGI-GRGIPIVSSLEEALAAGADTLIIGIAPSGGVLPEAWREVLLEALEAGLDVVSGLHEFLSD-DPEL 80 (302)
T ss_pred CHHCCCCHHHHCCC-CCCCCEECCHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHC-CHHH
T ss_conf 10116858995499-999998676999986699989997416888489899999999998289262335777514-8989
Q ss_pred HHHHCC
Q ss_conf 874035
Q gi|254780279|r 114 SSFARN 119 (280)
Q Consensus 114 ~~~s~~ 119 (280)
.+++++
T Consensus 81 ~~~A~~ 86 (302)
T pfam07755 81 AAAAKK 86 (302)
T ss_pred HHHHHH
T ss_conf 999998
No 419
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=74.24 E-value=7 Score=19.33 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=40.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHH----CCCCCCCC--CCCCCHHHHHCCCCEEEEE
Q ss_conf 37999899-87799999999838997899999648980204553666----08754675--4556857852135504763
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNF----VGISPMGI--KFSDNLAMAIQSVDGIIDF 78 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~----~~~~~~~v--~i~~dl~~~~~~~DViIDF 78 (280)
-++.|+|+ |-.|+.....+... +.+++ .+.|+..+ -+.+.+. .+..-..+ ...++..+.+..+|||+
T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~-Ga~v~-lv~R~~ek--~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l~~adiV~-- 102 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVV-LVGRDLER--AQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF-- 102 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEE-EEECCHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEE--
T ss_conf 88999858857899999999983-99799-99587888--99999999997098731135788778997746698999--
Q ss_pred ECCCHHHHHHH
Q ss_conf 10102478887
Q gi|254780279|r 79 SSPALTLQSLN 89 (280)
Q Consensus 79 T~P~~~~~~~~ 89 (280)
+.-.+..+.+.
T Consensus 103 ~a~aAGv~~~~ 113 (194)
T cd01078 103 AAGAAGVELLE 113 (194)
T ss_pred ECCHHHHHHHH
T ss_conf 64277788878
No 420
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=74.01 E-value=6 Score=19.78 Aligned_cols=30 Identities=10% Similarity=-0.042 Sum_probs=17.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCEEEE
Q ss_conf 1355047631010247888764323721576
Q gi|254780279|r 70 QSVDGIIDFSSPALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 70 ~~~DViIDFT~P~~~~~~~~~a~~~g~~vVi 100 (280)
.++|+|.- ..|......+..+...++|+|+
T Consensus 82 ~~~Diih~-h~~~~~~~~~~~~~~~~~~~v~ 111 (357)
T cd03795 82 KKADVIHL-HFPNPLADLALLLLPRKKPVVV 111 (357)
T ss_pred CCCCEEEE-CCCCHHHHHHHHHHHCCCCEEE
T ss_conf 59999999-4763599999999857997999
No 421
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=73.76 E-value=5.3 Score=20.15 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=25.0
Q ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC
Q ss_conf 989987799999999838997899999648980204
Q gi|254780279|r 10 VLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIG 45 (280)
Q Consensus 10 I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g 45 (280)
|+|+|..|.+++-++....=.+=...+|-.+.+..|
T Consensus 1 iiG~G~VGss~A~a~~~~g~a~E~vliDin~~ka~G 36 (302)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGLADEIVLIDINKDKAEG 36 (302)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 911486189999999731503188788347577898
No 422
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=73.53 E-value=7.3 Score=19.21 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=42.4
Q ss_pred HCCCCEEE---EEECCCHHHHHHHHHHH----CCCEEE-EEE-CCCCHHH---HHHHHHHHCCCCC----EECCCHHHHH
Q ss_conf 21355047---63101024788876432----372157-650-2223135---8999874035552----1000011568
Q gi|254780279|r 69 IQSVDGII---DFSSPALTLQSLNISAQ----HNIVHI-IGT-TGFSVKE---NEVISSFARNAPI----VKSSNMSLGI 132 (280)
Q Consensus 69 ~~~~DViI---DFT~P~~~~~~~~~a~~----~g~~vV-iGT-TG~~~e~---~~~l~~~s~~~~i----l~apN~SiGv 132 (280)
..++|++| |-|.|+......++..+ ..+|+| +|+ .-+.+++ .++.+++|++..+ -.|.-..-+|
T Consensus 75 ~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a~~~~~~~~~e~SAktg~nv 154 (169)
T cd01892 75 LAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCH
T ss_conf 54698899999799878999999999970056898189998865542037546776999999839996669983279898
Q ss_pred H-HHHHHHHHHH
Q ss_conf 9-9999999999
Q gi|254780279|r 133 N-FLGFLVETAA 143 (280)
Q Consensus 133 ~-ll~~l~~~~a 143 (280)
+ ++.+++..|.
T Consensus 155 ~~~F~~la~~a~ 166 (169)
T cd01892 155 NELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999976
No 423
>PRK06921 hypothetical protein; Provisional
Probab=73.46 E-value=7.3 Score=19.20 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=12.9
Q ss_pred EEEEECCCCHHHHH--HHHHHHC--CCCCEECC
Q ss_conf 57650222313589--9987403--55521000
Q gi|254780279|r 98 HIIGTTGFSVKENE--VISSFAR--NAPIVKSS 126 (280)
Q Consensus 98 vViGTTG~~~e~~~--~l~~~s~--~~~il~ap 126 (280)
+..|.+|-..-++. ..+.+-+ .++|++-|
T Consensus 120 ~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~ 152 (265)
T PRK06921 120 ALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 152 (265)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 997289898899999999999996297199988
No 424
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=73.35 E-value=7.4 Score=19.18 Aligned_cols=40 Identities=10% Similarity=0.312 Sum_probs=18.6
Q ss_pred CCEEEEEECC---CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC
Q ss_conf 8737999899---87799999999838997899999648980204
Q gi|254780279|r 4 SPMRISVLGG---GRMGQALIKEIHNNPSITLHSIIVRSGSPLIG 45 (280)
Q Consensus 4 ~~IkV~I~Ga---GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g 45 (280)
.+|=++|.|. =|.-. +++.+. ..+.++-.+....-.++++
T Consensus 5 K~IllgVtGsIAayK~~~-L~r~L~-k~G~~V~vvmT~~A~~fi~ 47 (392)
T PRK05579 5 KRIVLGVSGGIAAYKALE-LVRRLR-KAGADVRVVMTEAALKFVT 47 (392)
T ss_pred CEEEEEECCHHHHHHHHH-HHHHHH-HCCCEEEEEECHHHHHHCC
T ss_conf 989999833799999999-999998-7899899998853754279
No 425
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=73.25 E-value=7.4 Score=19.17 Aligned_cols=69 Identities=16% Similarity=0.384 Sum_probs=40.3
Q ss_pred CEEEEEECC---CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHH-----HCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 737999899---8779999999983899789999964898020455366-----60875467545568578521355047
Q gi|254780279|r 5 PMRISVLGG---GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGN-----FVGISPMGIKFSDNLAMAIQSVDGII 76 (280)
Q Consensus 5 ~IkV~I~Ga---GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~-----~~~~~~~~v~i~~dl~~~~~~~DViI 76 (280)
-+||+++|- +|+.+.++.....- +++++ ++..++-. ...+.-+ ........+.+++|+.++++.+|||.
T Consensus 2 g~~i~~vGD~~~~rv~~S~~~~~~~~-g~~v~-i~~P~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~al~~aDvvy 78 (155)
T pfam00185 2 GLKVAIVGDGKHNRVAHSLILALAKF-GMEVV-LVAPKGLP-PDPELVDEAKKNALKSGGISITVTDDLEEALKGADVVY 78 (155)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC-CCEEE-EECCCCCC-CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCEEE
T ss_conf 98999983787274999999999984-99899-98785238-88899999999988628974999849999845399999
No 426
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=73.14 E-value=4.9 Score=20.38 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=38.8
Q ss_pred CHHHHHCCCCEEEEEEC---CCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 85785213550476310---102478887643237215765022231358999874035552100001156
Q gi|254780279|r 64 NLAMAIQSVDGIIDFSS---PALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 64 dl~~~~~~~DViIDFT~---P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280)
.++..-++-||+|-||+ ...+.+-+++|.+.|..+ ++-||+....+..+-..+. + .+..|..+.+
T Consensus 102 Ql~alg~~gDiLi~iStSGnS~Nii~Ai~~A~~~g~~~-i~ltG~~gg~l~~l~~~~D-i-~I~vps~~t~ 169 (196)
T PRK10886 102 QVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTI-VALTGYDGGELAGLLGPQD-V-EIRIPSHRSA 169 (196)
T ss_pred HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHCCCCC-E-EEECCCCCCH
T ss_conf 99985679998999948999989999999999889989-9997688623665157679-8-9986999811
No 427
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=73.05 E-value=7.5 Score=19.14 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=19.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 37999899877999999998389
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNP 28 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~ 28 (280)
-++.+.|+|.+|+.+++.+...-
T Consensus 24 ~~v~v~G~G~vg~~ia~ll~~~~ 46 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG 46 (86)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC
T ss_conf 58999778604289999999817
No 428
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=72.80 E-value=7.6 Score=19.10 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=18.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 13550476310102478887643237215765
Q gi|254780279|r 70 QSVDGIIDFSSPALTLQSLNISAQHNIVHIIG 101 (280)
Q Consensus 70 ~~~DViIDFT~P~~~~~~~~~a~~~g~~vViG 101 (280)
.++|+|+-.+ +.........+...++|+|.-
T Consensus 84 ~~~Dii~~~~-~~~~~~~~~~~~~~~~~~i~~ 114 (374)
T cd03801 84 ERFDVVHAHD-WLALLAAALAARLLGIPLVLT 114 (374)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCEEEE
T ss_conf 5998999788-317899999998669978999
No 429
>KOG4039 consensus
Probab=72.76 E-value=4.7 Score=20.50 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=32.8
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 737999899-8779999999983899789999964898
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGS 41 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~ 41 (280)
.|..-|+|+ |-.|+.+++.+.+.+.+.-|.++-|.+.
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~ 55 (238)
T KOG4039 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL 55 (238)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 02247885355313899999885656206999973157
No 430
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.37 E-value=7.5 Score=19.14 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=30.0
Q ss_pred CEEEECCCCCEEEEEEEECCCCEEEEE----EEEC-CHHHHHHHHHHHHHHHHCC----CCCCCCHHHH
Q ss_conf 013752882057999981899589999----9972-7376799999999998348----9983688898
Q gi|254780279|r 209 IASLRAGSIVGEHSVVIAGEGESITLS----HSAY-DRRIFARGSLTAALWAKSQ----IPGLYSMRDV 268 (280)
Q Consensus 209 i~s~R~g~~~g~H~V~f~~~~E~i~i~----H~a~-~R~~Fa~Gal~aa~~l~~~----~~G~y~m~dv 268 (280)
++..+.++ | +.+..-++|.-+-|. |-+. =--+|+.=++ |+.||... ++++|.+-.=
T Consensus 320 V~~y~l~d--G-r~i~lLaeGrLvNLa~a~GHP~eVMd~SFa~QaL-a~~~L~~~~~~l~~~V~~lP~~ 384 (427)
T PRK05476 320 VDEYTLPD--G-KRIILLAEGRLVNLGAATGHPSEVMDLSFANQAL-AQIELFTNRGKYENGVYVLPKE 384 (427)
T ss_pred CEEEEECC--C-CEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHCCCCCCCCEEECCHH
T ss_conf 52899679--9-5799984562887326889867872067899999-9999986533268975878789
No 431
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=72.35 E-value=7.7 Score=19.03 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=77.0
Q ss_pred CCEEEEEECCCHHHHHHH-HHHH-------HCCCCEEE---EEEECCCCHHHCCCHHHHCCCCCCCCCCC-CCHHHH---
Q ss_conf 873799989987799999-9998-------38997899---99964898020455366608754675455-685785---
Q gi|254780279|r 4 SPMRISVLGGGRMGQALI-KEIH-------NNPSITLH---SIIVRSGSPLIGQDVGNFVGISPMGIKFS-DNLAMA--- 68 (280)
Q Consensus 4 ~~IkV~I~GaGkMG~~ii-~~i~-------~~~~~eLv---~~i~~~~~~~~g~d~~~~~~~~~~~v~i~-~dl~~~--- 68 (280)
++|+|+++|.=+.||.-+ ..+. +-|+.++- |-+...+....-- +..|+.++.-... .+++|.
T Consensus 2 k~i~IALvGNPN~GKSTLFN~LTG~~q~VgNwPGvTVEkk~G~~~~~~~~~~iv---DLPG~YSL~~~S~e~s~dE~Var 78 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLV---DLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCEEEEE---ECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 735699888998789999999868998357899764742389999689469999---79977869999977773089999
Q ss_pred ---H-CCCCEE---EEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHH----HHHHHHCC--CCCE-ECCCHHHHHHH
Q ss_conf ---2-135504---763101024788876432372157650222313589----99874035--5521-00001156899
Q gi|254780279|r 69 ---I-QSVDGI---IDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENE----VISSFARN--APIV-KSSNMSLGINF 134 (280)
Q Consensus 69 ---~-~~~DVi---IDFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~----~l~~~s~~--~~il-~apN~SiGv~l 134 (280)
+ +++|+| +|.|+.+-.+...-..++.|+|+|+.-.=.++.+.+ .++++++. +||+ .+..-..|+.-
T Consensus 79 ~~ll~~~pDvvvnVvDAtnLeRnLyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID~~~Ls~~LGvPVV~~~A~~g~Gi~e 158 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEA 158 (772)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCEECHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 98613999899998016875442899999997499989998779989887793289999998589989998278879999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780279|r 135 LGFLVETAA 143 (280)
Q Consensus 135 l~~l~~~~a 143 (280)
+++.+....
T Consensus 159 L~~ai~~~~ 167 (772)
T PRK09554 159 LKLAIDRYK 167 (772)
T ss_pred HHHHHHHHH
T ss_conf 999999752
No 432
>PRK09932 glycerate kinase II; Provisional
Probab=72.24 E-value=7.8 Score=19.01 Aligned_cols=10 Identities=0% Similarity=0.099 Sum_probs=4.3
Q ss_pred HHHHHHHHCC
Q ss_conf 8887643237
Q gi|254780279|r 86 QSLNISAQHN 95 (280)
Q Consensus 86 ~~~~~a~~~g 95 (280)
+.++.|+++|
T Consensus 116 elI~~Al~~G 125 (381)
T PRK09932 116 ELIRHALDNG 125 (381)
T ss_pred HHHHHHHHCC
T ss_conf 9999999769
No 433
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=71.84 E-value=8 Score=18.95 Aligned_cols=97 Identities=20% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCCCCEEEEEECC---CHH--HHHHHHHHHHCCCCEEEEEEE---CCCCHHHCCCHHHHC------------CCCCCCCC
Q ss_conf 9988737999899---877--999999998389978999996---489802045536660------------87546754
Q gi|254780279|r 1 MHQSPMRISVLGG---GRM--GQALIKEIHNNPSITLHSIIV---RSGSPLIGQDVGNFV------------GISPMGIK 60 (280)
Q Consensus 1 M~~~~IkV~I~Ga---GkM--G~~ii~~i~~~~~~eLv~~i~---~~~~~~~g~d~~~~~------------~~~~~~v~ 60 (280)
|..++|||+|.|- ||. =+-+++. .+..++.+.|.+. |.+.+..|-.+-... +-...|..
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~-L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEK-LREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH-HHHCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEE
T ss_conf 9875459998679984589999999999-985596651398311420882751599981479557988847887621047
Q ss_pred C--CCCHH--------HHHCCCCEEE-E------EECCCHHHHHHHHHHHCCCEEE
Q ss_conf 5--56857--------8521355047-6------3101024788876432372157
Q gi|254780279|r 61 F--SDNLA--------MAIQSVDGII-D------FSSPALTLQSLNISAQHNIVHI 99 (280)
Q Consensus 61 i--~~dl~--------~~~~~~DViI-D------FT~P~~~~~~~~~a~~~g~~vV 99 (280)
. .++++ .+++.+|||| | |.++ .+.+.++..++.++|++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~-~f~~~ve~vl~~~kpli 134 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSK-KFREAVEEVLKSGKPLI 134 (179)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCH-HHHHHHHHHHCCCCCEE
T ss_conf 86278889986899998863499899943363302008-89999999965899379
No 434
>COG2229 Predicted GTPase [General function prediction only]
Probab=71.35 E-value=8.1 Score=18.88 Aligned_cols=121 Identities=12% Similarity=0.212 Sum_probs=59.4
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEEC-----CCCHHHCCCHHHHCCCCCCCCCCCCCH---------HHH
Q ss_conf 8737999899-8779999999983899789999964-----898020455366608754675455685---------785
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVR-----SGSPLIGQDVGNFVGISPMGIKFSDNL---------AMA 68 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~-----~~~~~~g~d~~~~~~~~~~~v~i~~dl---------~~~ 68 (280)
..+||+|.|. |--+...++++...+-...-+.... +...-...|.+...-....++..++-. +..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l 88 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL 88 (187)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 01069998443664066788765345620103355554466455068632411377586168996589707789899987
Q ss_pred HCCCC---EEEEEECCCHH--HHHHHHHHHCC-CEEEEEEC------CCCHHHHHHHHHHH-CCCCCEE
Q ss_conf 21355---04763101024--78887643237-21576502------22313589998740-3555210
Q gi|254780279|r 69 IQSVD---GIIDFSSPALT--LQSLNISAQHN-IVHIIGTT------GFSVKENEVISSFA-RNAPIVK 124 (280)
Q Consensus 69 ~~~~D---ViIDFT~P~~~--~~~~~~a~~~g-~~vViGTT------G~~~e~~~~l~~~s-~~~~il~ 124 (280)
.+.++ ++||-|.|... .+.+++....+ +|+||+.+ -|+.+++.++-+++ ...|++-
T Consensus 89 ~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 89 SRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 487642899995699964678999998852068878999504225778998999999971127986443
No 435
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=70.94 E-value=7.9 Score=18.96 Aligned_cols=62 Identities=23% Similarity=0.393 Sum_probs=36.0
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC-CCCEEEEEE
Q ss_conf 999899-877999999998389978999996489802045536660875467545568578521-355047631
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ-SVDGIIDFS 79 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~-~~DViIDFT 79 (280)
|+|.|+ |-+|+.++..+.+ .+.++. ++.|+..+...... ..+...+.+..... .+|+||...
T Consensus 1 IliTGgTGlIG~~L~~~L~~-~gh~v~-iltR~~~~~~~~~~--------~~v~~~~~~~~~~~~~~DavINLA 64 (297)
T COG1090 1 ILITGGTGLIGRALTARLRK-GGHQVT-ILTRRPPKASQNLH--------PNVTLWEGLADALTLGIDAVINLA 64 (297)
T ss_pred CEEECCCCCHHHHHHHHHHH-CCCEEE-EEECCCCCHHHHCC--------CCCCCCCHHHHCCCCCCCEEEECC
T ss_conf 95735665016899999984-898699-99747850233247--------653343012440367877899888
No 436
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=70.81 E-value=8.4 Score=18.80 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=17.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 3550476310102478887643237215765
Q gi|254780279|r 71 SVDGIIDFSSPALTLQSLNISAQHNIVHIIG 101 (280)
Q Consensus 71 ~~DViIDFT~P~~~~~~~~~a~~~g~~vViG 101 (280)
++|+|+-++.+.. .-....+...++++|.-
T Consensus 81 ~~DiI~~~~~~~~-~~~~~~~~~~~~~~i~~ 110 (353)
T cd03811 81 KPDVVISHLTTTP-NVLALLAARLGTKLIVW 110 (353)
T ss_pred CCCEEEECCCCHH-HHHHHHHHHCCCCEEEE
T ss_conf 9989999886278-99999997479978999
No 437
>KOG1370 consensus
Probab=70.62 E-value=6.9 Score=19.36 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=36.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEEC-CCH-HH
Q ss_conf 9998998779999999983899789999964898020455366608754675455685785213550476310-102-47
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSS-PAL-TL 85 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~-P~~-~~ 85 (280)
+.|.|||..|+..++++......-++--+|.-..-... . .|..+ ..++++.+..||+|--|- .+. +-
T Consensus 217 ~Vv~GYGdVGKgCaqaLkg~ga~VivTEiDPI~ALQAa-----M-----eG~~V-~tm~ea~~e~difVTtTGc~dii~~ 285 (434)
T KOG1370 217 AVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAA-----M-----EGYEV-TTLEEAIREVDIFVTTTGCKDIITG 285 (434)
T ss_pred EEEECCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHH-----H-----HCCEE-EEHHHHHHCCCEEEECCCCCCHHHH
T ss_conf 99963576456689997506868999605806899987-----5-----25375-4688764127789975687312339
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 8887643237215765022231358
Q gi|254780279|r 86 QSLNISAQHNIVHIIGTTGFSVKEN 110 (280)
Q Consensus 86 ~~~~~a~~~g~~vViGTTG~~~e~~ 110 (280)
+|. .+.+-..|+|-.|+.+-++
T Consensus 286 ~H~---~~mk~d~IvCN~Ghfd~Ei 307 (434)
T KOG1370 286 EHF---DQMKNDAIVCNIGHFDTEI 307 (434)
T ss_pred HHH---HHCCCCCEEECCCCCCCEE
T ss_conf 999---7476773785256543011
No 438
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=70.54 E-value=7.3 Score=19.22 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=17.1
Q ss_pred CCCEEEEEECCCHH-HHHHHHHHHCCCEEEE
Q ss_conf 35504763101024-7888764323721576
Q gi|254780279|r 71 SVDGIIDFSSPALT-LQSLNISAQHNIVHII 100 (280)
Q Consensus 71 ~~DViIDFT~P~~~-~~~~~~a~~~g~~vVi 100 (280)
++|+|. +..|... ......|...++|+|+
T Consensus 83 ~pDiIh-~~~~~~~~~~a~~~~~~~~ip~i~ 112 (364)
T cd03814 83 APDVVH-IATPGPLGLAALRAARRLGIPVVT 112 (364)
T ss_pred CCCEEE-ECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 999999-878416789999999975997899
No 439
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=70.08 E-value=8.7 Score=18.69 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=53.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC--CCCCCC----CCCHHHHHCCCCEEEEEE
Q ss_conf 37999899877999999998389978999996489802045536660875--467545----568578521355047631
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS--PMGIKF----SDNLAMAIQSVDGIIDFS 79 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~--~~~v~i----~~dl~~~~~~~DViIDFT 79 (280)
-||.|+|.|-+|.++++-+.. .++.=+.++|... ..-.|++.-.-.. ..|..- ...+.++ +.+|-+++.
T Consensus 21 s~VLiiG~~glG~EiaKNLvL-aGV~svti~D~~~--v~~~DLg~nFfl~~~diGk~Raea~~~~L~eL--Np~V~v~~~ 95 (425)
T cd01493 21 AHVCLLNATATGTEILKNLVL-PGIGSFTIVDGSK--VDEEDLGNNFFLDASSLGKSRAEATCELLQEL--NPDVNGSAV 95 (425)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEEEECCC--CCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHH--CCCCCEEEE
T ss_conf 939999997119999987213-2897699995991--87888576615667785883999999999984--786854787
Q ss_pred C--CCHHHH-HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC--CCCCEECCCH
Q ss_conf 0--102478-88764323721576502223135899987403--5552100001
Q gi|254780279|r 80 S--PALTLQ-SLNISAQHNIVHIIGTTGFSVKENEVISSFAR--NAPIVKSSNM 128 (280)
Q Consensus 80 ~--P~~~~~-~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~--~~~il~apN~ 128 (280)
. +....+ ...+..+. .+||.|. .+.+++..+.++++ ++|++.+-..
T Consensus 96 ~~~~~~~~~~~~~~~~~f--~vVV~t~-~~~~~~~~in~~cr~~~i~fI~~~~~ 146 (425)
T cd01493 96 EESPEALLDNDPSFFSQF--TVVIATN-LPESTLLRLADVLWSANIPLLYVRSY 146 (425)
T ss_pred ECCHHHHHHCCHHHHCCC--CEEEEEC-CCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 068788642687675283--3899828-89999999999999869978999824
No 440
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=69.85 E-value=6.5 Score=19.55 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=16.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 5504763101024788876432372157650222
Q gi|254780279|r 72 VDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 72 ~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~ 105 (280)
+|+|+==+.+.... .+.+...++|+|-|-|+.
T Consensus 102 ~D~iviR~~~~~~~--~~~a~~~~vPVIN~~~~~ 133 (331)
T PRK02102 102 YDGIEYRGFSQEIV--EELAKYSGVPVWNGLTDE 133 (331)
T ss_pred CCEEEEECCCHHHH--HHHHHHCCCCEECCCCCC
T ss_conf 16789962772899--999974798645488876
No 441
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=69.57 E-value=8.9 Score=18.62 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=47.4
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC----CCCEE-EEEEC---CC-HH---
Q ss_conf 999999998389978999996489802045536660875467545568578521----35504-76310---10-24---
Q gi|254780279|r 17 GQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ----SVDGI-IDFSS---PA-LT--- 84 (280)
Q Consensus 17 G~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~----~~DVi-IDFT~---P~-~~--- 84 (280)
|-.=++++.+.-++-+.|++-|+- ++.++.++..++++.. .+||| +|.|. |. ..
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~--------------~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~ 119 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDY--------------PDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEEL 119 (229)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCC--------------CCCCCEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 065699998617887688880589--------------999935566189999999779909996255687984359999
Q ss_pred -----------------HHHHHHHHHCCCEEEEEEC--CCCHH-------HHHHHHHHHC
Q ss_conf -----------------7888764323721576502--22313-------5899987403
Q gi|254780279|r 85 -----------------LQSLNISAQHNIVHIIGTT--GFSVK-------ENEVISSFAR 118 (280)
Q Consensus 85 -----------------~~~~~~a~~~g~~vViGTT--G~~~e-------~~~~l~~~s~ 118 (280)
.+-..+|.+.|.-+| ||| ||+.+ +.+.++++++
T Consensus 120 i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~I-GTTLsGYT~~~~~~~~pDf~lvk~l~~ 178 (229)
T COG3010 120 IARIKYPGQLAMADCSTFEEGLNAHKLGFDII-GTTLSGYTGYTEKPTEPDFQLVKQLSD 178 (229)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHCCCCEE-ECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99733579478732598888888997399678-224201468998778972899999986
No 442
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=69.23 E-value=9 Score=18.58 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=68.2
Q ss_pred CCHHHHHCCCCEEE----------EEE-CCCHHHHHHHHHHHCCCEEEEEECCCC------HHHHHHHHHHHCC-----C
Q ss_conf 68578521355047----------631-010247888764323721576502223------1358999874035-----5
Q gi|254780279|r 63 DNLAMAIQSVDGII----------DFS-SPALTLQSLNISAQHNIVHIIGTTGFS------VKENEVISSFARN-----A 120 (280)
Q Consensus 63 ~dl~~~~~~~DViI----------DFT-~P~~~~~~~~~a~~~g~~vViGTTG~~------~e~~~~l~~~s~~-----~ 120 (280)
+++++.++.+|.|. .+. .|..=...++.|.++|||+++.|-=+. -....++.+.+.. =
T Consensus 229 ~nl~eIi~~sDgIMIARGDLgvEi~~e~vp~~Qk~Ii~~c~~~gKPvIvATqmLeSMi~~p~PTRAEv~DVanAv~dG~D 308 (480)
T cd00288 229 NNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTD 308 (480)
T ss_pred HCHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCEEEHHHHHHHHHHCCC
T ss_conf 47999998538899977865564798898999999999999839959996736887623899852102458889874586
Q ss_pred CCEECCCHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCC
Q ss_conf 5210000115689999999999986115666-008999986416789986789999999985-32887642211123576
Q gi|254780279|r 121 PIVKSSNMSLGINFLGFLVETAAEYLLPAKD-WDFEILEMHHRRKLDSPSGTALLLGEAIAN-GRKVNLTDHMVLNRHIQ 198 (280)
Q Consensus 121 ~il~apN~SiGv~ll~~l~~~~a~~l~~~~~-~dieI~E~HH~~K~DaPSGTA~~la~~i~~-~~~~~~~~~~~~~~~~~ 198 (280)
.++.+.-+++|-.=. +.++.+++.....+. ++-+..-.+...+...|...+-.++..... +...+-+-..++++.|.
T Consensus 309 avMLs~ETa~G~yPv-~~V~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~a~aIv~~T~sG~ 387 (480)
T cd00288 309 CVMLSGETAKGKYPV-EAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGR 387 (480)
T ss_pred EEEECHHHCCCCCHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 799753222787989-9999999999999735204544445431257899989999999999998469989999879858
Q ss_pred CC
Q ss_conf 76
Q gi|254780279|r 199 QC 200 (280)
Q Consensus 199 ~~ 200 (280)
+.
T Consensus 388 tA 389 (480)
T cd00288 388 TA 389 (480)
T ss_pred HH
T ss_conf 99
No 443
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=69.03 E-value=8.3 Score=18.81 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 877999999998389978999996
Q gi|254780279|r 14 GRMGQALIKEIHNNPSITLHSIIV 37 (280)
Q Consensus 14 GkMG~~ii~~i~~~~~~eLv~~i~ 37 (280)
.++=..+++.+.+ .++++.-+..
T Consensus 16 e~~~~~la~~L~~-~G~~V~vit~ 38 (348)
T cd03820 16 ERVLSNLANALAE-KGHEVTIISL 38 (348)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEEE
T ss_conf 9999999999987-7998999996
No 444
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=68.92 E-value=9.1 Score=18.53 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=68.8
Q ss_pred EEEEEECCCH---HHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCC-CCCCCCCCCCHHHHHCCCCEEEEE-E-
Q ss_conf 3799989987---799999999838997899999648980204553666087-546754556857852135504763-1-
Q gi|254780279|r 6 MRISVLGGGR---MGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGI-SPMGIKFSDNLAMAIQSVDGIIDF-S- 79 (280)
Q Consensus 6 IkV~I~GaGk---MG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~-~~~~v~i~~dl~~~~~~~DViIDF-T- 79 (280)
|=|||+|.|| .|+. ++...+..-=-|.++.|.=-... +..+.-+ +..|+++-..-. = +
T Consensus 86 l~VGVNG~GKTTTIaKL-A~~l~~~Gk~V~laAgDTFRAAA----~EQL~~Wa~R~gv~vi~~~~-----------gn~D 149 (284)
T TIGR00064 86 LFVGVNGVGKTTTIAKL-ANKLKKQGKSVLLAAGDTFRAAA----IEQLEVWAKRLGVDVIKQKE-----------GNAD 149 (284)
T ss_pred EEEEEECCCHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHH----HHHHHHHHHHHCCEEEECCC-----------CCCC
T ss_conf 99844088601028899-99998749908998275247999----99999989883875540788-----------9887
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEC-CCC------HHHHHHHHHHHCCCCCEECCCHHHHHH---HHHHHHHHHHHHHCCC
Q ss_conf 010247888764323721576502-223------135899987403555210000115689---9999999999861156
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTT-GFS------VKENEVISSFARNAPIVKSSNMSLGIN---FLGFLVETAAEYLLPA 149 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTT-G~~------~e~~~~l~~~s~~~~il~apN~SiGv~---ll~~l~~~~a~~l~~~ 149 (280)
+++..++-++.|...|+-+|++=| |=- -++++++++..++.--+-+|..+|=|= .=+..+.+| ++|+-.
T Consensus 150 PAaV~fDAi~~Ak~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~~QA-~~F~ea 228 (284)
T TIGR00064 150 PAAVIFDAIQAAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNALEQA-KVFNEA 228 (284)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHH-HHHHHH
T ss_conf 1789999899998749978997347545466203999999999873210257875575422022203089999-998654
Q ss_pred CCCHHHHHHHHHHCCCCCCC--HHHHHHHHHH
Q ss_conf 66008999986416789986--7899999999
Q gi|254780279|r 150 KDWDFEILEMHHRRKLDSPS--GTALLLGEAI 179 (280)
Q Consensus 150 ~~~dieI~E~HH~~K~DaPS--GTA~~la~~i 179 (280)
-++|= |+ --|.|+=| |.++++++.+
T Consensus 229 v~ltG-ii----LTKLDg~AKGG~~l~i~~~l 255 (284)
T TIGR00064 229 VGLTG-II----LTKLDGTAKGGIILAIAYEL 255 (284)
T ss_pred CCCCE-EE----EECCCCCCHHHHHHHHHHHH
T ss_conf 06885-89----96346880378999889985
No 445
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR010136 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry represents bacterial N-acetyl-gamma-glutamyl-phosphate reductases, an enzyme catalysing the third step of arginine biosynthesis from glutamate.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=67.76 E-value=6.9 Score=19.38 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=61.0
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC-HH
Q ss_conf 799989-9877999999998389978999996489802045536660875467545568578521355047631010-24
Q gi|254780279|r 7 RISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA-LT 84 (280)
Q Consensus 7 kV~I~G-aGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~-~~ 84 (280)
||-|=| +|-.|=.|.+-+...+|+||+-+-..+ -||..+ -.+++..+||.|=| .|+ +.
T Consensus 3 KvFiDGeaGTTGLqi~~rL~~R~DleLlsI~~~r-----RKDa~~--------------RA~lLNaaDvaiLC-LPDdAa 62 (314)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDLELLSIAPDR-----RKDAAE--------------RAKLLNAADVAILC-LPDDAA 62 (314)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCHHEEEECCCC-----CCCHHH--------------HHHHHHHHHHHHHC-CCCHHH
T ss_conf 5364178886267898862477620003106332-----679799--------------88775467323334-862455
Q ss_pred HHHHHHHHHCCCEEEEEEC----------CC---CHHHHHHHHHHHCCC
Q ss_conf 7888764323721576502----------22---313589998740355
Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTT----------GF---SVKENEVISSFARNA 120 (280)
Q Consensus 85 ~~~~~~a~~~g~~vViGTT----------G~---~~e~~~~l~~~s~~~ 120 (280)
.|-+-..-.-+..++=.+| || +.+|.++|++ ||.|
T Consensus 63 rEAVSLv~np~~~ilDASTAyRt~~dW~YGfpEL~~eQREki~~-sk~v 110 (314)
T TIGR01851 63 REAVSLVDNPNTKILDASTAYRTADDWVYGFPELAPEQREKIRN-SKRV 110 (314)
T ss_pred HHCEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH-CCEE
T ss_conf 43000026877247515400004877411464578775246760-5541
No 446
>PTZ00188 adrenodoxin reductase; Provisional
Probab=67.69 E-value=9.7 Score=18.37 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=31.2
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCH
Q ss_conf 8873799989987799999999838997899999648980
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSP 42 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~ 42 (280)
..|.||||+|+|=-|=..++.+.++++++ |-+++|-+.|
T Consensus 37 ~rPlRVAIVGSGPAGfYaA~~Llk~~~v~-VD~fErLP~P 75 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNP 75 (506)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCCE-EEEEECCCCC
T ss_conf 87657999888838999999996389977-9888268988
No 447
>KOG0068 consensus
Probab=67.68 E-value=9.7 Score=18.37 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=44.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE--CCCHH-
Q ss_conf 999899877999999998389978999996489802045536660875467545568578521355047631--01024-
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS--SPALT- 84 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT--~P~~~- 84 (280)
++|+|+||.|+.++.... .-++..++.-.- .-.+..+..| +.. ..+++++..+|-|=--. +|+..
T Consensus 149 LgvlG~GrIGseVA~r~k-~~gm~vI~~dpi-----~~~~~~~a~g-----vq~-vsl~Eil~~ADFitlH~PLtP~T~~ 216 (406)
T KOG0068 149 LGVLGLGRIGSEVAVRAK-AMGMHVIGYDPI-----TPMALAEAFG-----VQL-VSLEEILPKADFITLHVPLTPSTEK 216 (406)
T ss_pred EEEEECCCCHHHHHHHHH-HCCCEEEEECCC-----CCHHHHHHCC-----CEE-EEHHHHHHHCCEEEECCCCCCCHHH
T ss_conf 888504621189999998-658548860687-----8467787516-----545-4098877556889981678821431
Q ss_pred --HHHHHHHHHCCCEEEEEECCC
Q ss_conf --788876432372157650222
Q gi|254780279|r 85 --LQSLNISAQHNIVHIIGTTGF 105 (280)
Q Consensus 85 --~~~~~~a~~~g~~vViGTTG~ 105 (280)
.+..-...+.|+.+|=.+-|=
T Consensus 217 lin~~tfA~mKkGVriIN~aRGG 239 (406)
T KOG0068 217 LLNDETFAKMKKGVRIINVARGG 239 (406)
T ss_pred CCCHHHHHHHHCCCEEEEECCCC
T ss_conf 13878999860785899824775
No 448
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=67.59 E-value=9.7 Score=18.35 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=56.3
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH--CCCC-EEE
Q ss_conf 9988737999899-87799999999838997899999648980204553666087546754556857852--1355-047
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI--QSVD-GII 76 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~--~~~D-ViI 76 (280)
|.+.++||.|+-- =.+...+ ....+..++++..+-+- .++ ...+ ..+| |++
T Consensus 1 mm~~~~kILiVEDd~~~~~~l-~~~L~~~g~~v~~a~~~-------~~a-----------------~~~~~~~~~Dlvil 55 (239)
T PRK09468 1 MMQENYKILVVDDDMRLRALL-ERYLTEQGFQVRSAANA-------EQM-----------------DRLLTRESFHLMVL 55 (239)
T ss_pred CCCCCCEEEEEECCHHHHHHH-HHHHHHCCCEEEEECCH-------HHH-----------------HHHHHHCCCCEEEE
T ss_conf 999897899990999999999-99999889999998999-------999-----------------99997589989998
Q ss_pred EEECCCH-HHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 6310102-478887643237--215765022231358999874035
Q gi|254780279|r 77 DFSSPAL-TLQSLNISAQHN--IVHIIGTTGFSVKENEVISSFARN 119 (280)
Q Consensus 77 DFT~P~~-~~~~~~~a~~~g--~~vViGTTG~~~e~~~~l~~~s~~ 119 (280)
|...|.. ..+.++...+.+ .|+|+ -|+.++++ ..++.+...
T Consensus 56 Di~lp~~dG~~l~~~iR~~~~~~pII~-LTa~~~~~-d~i~~l~~G 99 (239)
T PRK09468 56 DLMLPGEDGLSICRRLRSQNNPTPIIM-LTAKGEEV-DRIVGLEMG 99 (239)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEE-EECCCCHH-HHHHHHHCC
T ss_conf 789988887346777875057877899-94667878-999999769
No 449
>PTZ00066 pyruvate kinase; Provisional
Probab=67.45 E-value=9.8 Score=18.34 Aligned_cols=137 Identities=11% Similarity=0.050 Sum_probs=69.1
Q ss_pred CCHHHHHCCCCEEE--------E--EE-CCCHHHHHHHHHHHCCCEEEEEECCCC------HHHHHHHHHHHCC-----C
Q ss_conf 68578521355047--------6--31-010247888764323721576502223------1358999874035-----5
Q gi|254780279|r 63 DNLAMAIQSVDGII--------D--FS-SPALTLQSLNISAQHNIVHIIGTTGFS------VKENEVISSFARN-----A 120 (280)
Q Consensus 63 ~dl~~~~~~~DViI--------D--FT-~P~~~~~~~~~a~~~g~~vViGTTG~~------~e~~~~l~~~s~~-----~ 120 (280)
+++++.++.+|.|+ + +. .|..=...++.|.++|||+++.|-=+. -....++.+.++. =
T Consensus 265 ~NldeIi~~sDgIMVARGDLgvEip~e~vp~~QK~II~~c~~~gKPVIvATqmLeSMi~np~PTRAEvsDVaNAV~DGaD 344 (513)
T PTZ00066 265 INFDKILAESDGIMVARGDLGMEIPPEKVFLAQKLMISKCNLQGKPIITATQMLESMIKNPRPTRAESTDVANAVLDGSD 344 (513)
T ss_pred HCHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 58999998589899956854242698886899999999999759969997425777404999871667789999984677
Q ss_pred CCEECCCHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCC
Q ss_conf 521000011568999999999998611566-6008999986416789986789999999985-32887642211123576
Q gi|254780279|r 121 PIVKSSNMSLGINFLGFLVETAAEYLLPAK-DWDFEILEMHHRRKLDSPSGTALLLGEAIAN-GRKVNLTDHMVLNRHIQ 198 (280)
Q Consensus 121 ~il~apN~SiGv~ll~~l~~~~a~~l~~~~-~~dieI~E~HH~~K~DaPSGTA~~la~~i~~-~~~~~~~~~~~~~~~~~ 198 (280)
.++.+.-+++|-.=. ..++.+++.....+ .++-+-.-.+...+.+.|--+.-.++..... +.+.+-+-..++++.|.
T Consensus 345 avMLSgETA~GkyPv-eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~~av~~A~~~~akaIv~~T~sG~ 423 (513)
T PTZ00066 345 CVMLSGETAGGKFPV-EAVTIMSKLCFEAEACIDYRLLYQSLVLAISTPVSVQEAIARSAVELAEDIEAKLIIALTETGY 423 (513)
T ss_pred EEEECCCCCCCCCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 788735224777989-9999999999998704106667766542268889879999999999997379989999879978
Q ss_pred CC
Q ss_conf 76
Q gi|254780279|r 199 QC 200 (280)
Q Consensus 199 ~~ 200 (280)
+.
T Consensus 424 ta 425 (513)
T PTZ00066 424 TA 425 (513)
T ss_pred HH
T ss_conf 99
No 450
>PRK07024 short chain dehydrogenase; Provisional
Probab=67.42 E-value=9.8 Score=18.33 Aligned_cols=82 Identities=23% Similarity=0.295 Sum_probs=50.6
Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCC-EEE
Q ss_conf 9988737999899-877999999998389978999996489802045536660875467545568578521--355-047
Q gi|254780279|r 1 MHQSPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVD-GII 76 (280)
Q Consensus 1 M~~~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~D-ViI 76 (280)
|.+ ||.|.|+ .-+|+++++...+ .+..|+ +++|+.... .+. ...+. .+. ...
T Consensus 1 M~~---~VlITGassGIG~a~A~~la~-~G~~v~-l~~R~~~~L-----~~~--------------~~~~~~~~~~~~~~ 56 (256)
T PRK07024 1 MPL---KVFITGASSGIGQALAREYAR-QGATLG-LVARRTDAL-----QAF--------------AARLPKARVSVYAA 56 (256)
T ss_pred CCC---EEEEECCCHHHHHHHHHHHHH-CCCEEE-EEECCHHHH-----HHH--------------HHHCCCCCEEEEEE
T ss_conf 999---899984602999999999998-899899-998988999-----999--------------99767997699981
Q ss_pred EEECCCHHHHHHHHHHH-CC-CEEEEEECCCC
Q ss_conf 63101024788876432-37-21576502223
Q gi|254780279|r 77 DFSSPALTLQSLNISAQ-HN-IVHIIGTTGFS 106 (280)
Q Consensus 77 DFT~P~~~~~~~~~a~~-~g-~~vViGTTG~~ 106 (280)
|.|.++.....++.+.+ .| +.+++--.|++
T Consensus 57 Dv~d~~~~~~~~~~~~~~~g~iDilinNAGi~ 88 (256)
T PRK07024 57 DVRDADALAAAAADFIAAHGCPDVVIANAGIS 88 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 17999999999999999839987999888556
No 451
>PRK08251 short chain dehydrogenase; Provisional
Probab=67.33 E-value=9.8 Score=18.32 Aligned_cols=83 Identities=13% Similarity=0.259 Sum_probs=50.2
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCE---EEEEECCC
Q ss_conf 7999899-8779999999983899789999964898020455366608754675455685785213550---47631010
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDG---IIDFSSPA 82 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DV---iIDFT~P~ 82 (280)
+|.|.|+ .-+|+++++..++. +..++ .++|+..+.. + +..++........| ..|+|.++
T Consensus 4 ~vlITGAssGIG~alA~~la~~-G~~v~-l~~r~~~~l~-----~----------~~~el~~~~~~~~v~~~~~Dvsd~~ 66 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAK-GRDLA-LCARRTDRLE-----E----------LKAELLARYPGIKVAVAALDVNDHD 66 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEE-EEECCHHHHH-----H----------HHHHHHHHCCCCEEEEEECCCCCHH
T ss_conf 8999478639999999999987-99899-9989888999-----9----------9999987379973999978678689
Q ss_pred HHHHHHHHHHHC--CCEEEEEECCCC
Q ss_conf 247888764323--721576502223
Q gi|254780279|r 83 LTLQSLNISAQH--NIVHIIGTTGFS 106 (280)
Q Consensus 83 ~~~~~~~~a~~~--g~~vViGTTG~~ 106 (280)
...+.++.+.+. ++.+++---|..
T Consensus 67 ~v~~~~~~~~~~~g~iD~lvnNAGi~ 92 (248)
T PRK08251 67 QVFEVFAEFSDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999999999809998999857657
No 452
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=67.27 E-value=9.9 Score=18.31 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=60.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHH---CCCC------EEEEEEECCCCHHHCCC-HHHH--CCCCCCCCCCCCCHHHHHCCC
Q ss_conf 7379998998779999999983---8997------89999964898020455-3666--087546754556857852135
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHN---NPSI------TLHSIIVRSGSPLIGQD-VGNF--VGISPMGIKFSDNLAMAIQSV 72 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~---~~~~------eLv~~i~~~~~~~~g~d-~~~~--~~~~~~~v~i~~dl~~~~~~~ 72 (280)
..||.++|+|--|-.+++++.. ..++ +-.+.+|+++--..+++ +... .-..+..-.-..++.++++.+
T Consensus 25 d~riv~~GAGsAg~gia~~l~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~dl~~~k~~~a~~~~~~~~~~L~e~v~~~ 104 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAV 104 (279)
T ss_pred HCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHC
T ss_conf 73799979758999999999999998599978861709996588753179998649999998747456899999999724
Q ss_pred --CEEEEEEC-CCHH-HHHHHHHHHC-CCEEEEEECCCCH---HHHHHHHHHHC
Q ss_conf --50476310-1024-7888764323-7215765022231---35899987403
Q gi|254780279|r 73 --DGIIDFSS-PALT-LQSLNISAQH-NIVHIIGTTGFSV---KENEVISSFAR 118 (280)
Q Consensus 73 --DViIDFT~-P~~~-~~~~~~a~~~-g~~vViGTTG~~~---e~~~~l~~~s~ 118 (280)
||+|=.|. |..+ .+.++...++ ..|+|..=+-=++ -.-+...++++
T Consensus 105 kp~vlIG~S~~~g~ft~e~v~~Ma~~~e~PIIFaLSNPt~~~E~~peda~~~t~ 158 (279)
T cd05312 105 KPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 897799806898977999999998459997799637997667889999986226
No 453
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=67.17 E-value=9.9 Score=18.30 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=26.1
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 37999899-8779999999983899789999964898
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGS 41 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~ 41 (280)
|+|.|.|+ |..|+.+++.+.+. +.++.++ .|+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~-~r~~~ 35 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAA-VRNPE 35 (275)
T ss_pred CCEEEECCCCCHHHHHHHHHHHC-CCEEEEE-CCCCH
T ss_conf 93899867775799999999975-9869997-36822
No 454
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=67.15 E-value=9.9 Score=18.30 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=19.5
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 355047631010247888764323721576502223
Q gi|254780279|r 71 SVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFS 106 (280)
Q Consensus 71 ~~DViIDFT~P~~~~~~~~~a~~~g~~vViGTTG~~ 106 (280)
-+|+|+== +++ .....+.|....+|+|=|-||..
T Consensus 100 y~D~iviR-~~~-~~~~~e~a~~s~vPVINa~~~~~ 133 (338)
T PRK08192 100 YSDVIAMR-HPD-AYSVKEFAEGSRVPVINGGDGSN 133 (338)
T ss_pred CCCEEEEE-CCC-HHHHHHHHHCCCCCEEECCCCCC
T ss_conf 59899998-851-00489987418987896788987
No 455
>TIGR00112 proC pyrroline-5-carboxylate reductase; InterPro: IPR000304 Delta 1-pyrroline-5-carboxylate reductase (P5CR) (1.5.1.2 from EC) , is the enzyme that catalyzes the terminal step in the biosynthesis of proline from glutamate, the NAD(P) dependent oxidation of 1-pyrroline-5-carboxylate into proline.; GO: 0004735 pyrroline-5-carboxylate reductase activity, 0006561 proline biosynthetic process.
Probab=67.12 E-value=9.9 Score=18.29 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=69.8
Q ss_pred EEEECCCHHHHHHHHHHHHCC-CC--EEEEEEECCCCHHHCCCHHHHCCCCCCC-CCCCCCH-HHHHCCCCEEEEEECCC
Q ss_conf 999899877999999998389-97--8999996489802045536660875467-5455685-78521355047631010
Q gi|254780279|r 8 ISVLGGGRMGQALIKEIHNNP-SI--TLHSIIVRSGSPLIGQDVGNFVGISPMG-IKFSDNL-AMAIQSVDGIIDFSSPA 82 (280)
Q Consensus 8 V~I~GaGkMG~~ii~~i~~~~-~~--eLv~~i~~~~~~~~g~d~~~~~~~~~~~-v~i~~dl-~~~~~~~DViIDFT~P~ 82 (280)
++++|+|+||+.++..+.... .. .-...+.+..... ........+ +....+. .+.....|+++-...|.
T Consensus 1 ~~~~g~G~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kP~ 74 (274)
T TIGR00112 1 LGFLGAGNMGEALLSGLLKSGAALAPSDILVINRSRPEK------LAALAKELGFVLASSDANEEAVKEADVVLLAVKPQ 74 (274)
T ss_pred CCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH------HHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEECHH
T ss_conf 903225336899999988752023312224642553456------78877663001012330134442045567851604
Q ss_pred HHHHHHHHHHH------CCCEEEEEECCCCHHHHHHHHHHHC--CCCCEE-CCCHHHHHH
Q ss_conf 24788876432------3721576502223135899987403--555210-000115689
Q gi|254780279|r 83 LTLQSLNISAQ------HNIVHIIGTTGFSVKENEVISSFAR--NAPIVK-SSNMSLGIN 133 (280)
Q Consensus 83 ~~~~~~~~a~~------~g~~vViGTTG~~~e~~~~l~~~s~--~~~il~-apN~SiGv~ 133 (280)
.....+..... .+.-++.-..|++-+.+...-...+ ..+++. -||..-.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~~r~~pn~~~~~g 134 (274)
T TIGR00112 75 DLEEVLSELKGAGLEKTKDKLLISIAAGVTLEKLEQLLGGDPPGLRRVVRVMPNTPAKVG 134 (274)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEEECCCCHHHHH
T ss_conf 578999864101100244533675111475899987514555453212333155213442
No 456
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.06 E-value=9.9 Score=18.28 Aligned_cols=218 Identities=11% Similarity=0.021 Sum_probs=98.3
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCC-CEEEEEECCCHH
Q ss_conf 7999899-87799999999838997899999648980204553666087546754556857852135-504763101024
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSV-DGIIDFSSPALT 84 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~-DViIDFT~P~~~ 84 (280)
.+.|.|+ +-+|+++++.+++. +..++.. ++.+.+... ...+. +...-.++ -+..|+|.++..
T Consensus 9 ~~lITGas~GIG~aia~~la~~-G~~V~~~-~~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~Dl~~~~~~ 72 (250)
T PRK12825 9 VALVTGAARGIGRAIALRLAAA-GADVIVH-PPSDEAAAE-ETVAA-------------VEALGRRAQAVQADVTDAAAL 72 (250)
T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEE-ECCCHHHHH-HHHHH-------------HHHCCCCEEEEEEECCCHHHH
T ss_conf 8999389558999999999987-9989999-798878999-99999-------------985399489999418999999
Q ss_pred HHHHHHHHHC--CCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHH--H
Q ss_conf 7888764323--72157650222313589998740355521000011568999999999998611566-60089999--8
Q gi|254780279|r 85 LQSLNISAQH--NIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLPAK-DWDFEILE--M 159 (280)
Q Consensus 85 ~~~~~~a~~~--g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~~~-~~dieI~E--~ 159 (280)
.+.++.+.+. ++.++|-..|..... .+.+...+ -|--.|.+-+.-...+.+.+.+.|.... ..=|-|.- .
T Consensus 73 ~~~~~~~~~~~g~iDilInnAg~~~~~--~~~~~~~~---~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~ 147 (250)
T PRK12825 73 EAAVEELVERFGAIDILVNNAGITGDG--RLWEMSDD---EWERVIDVNLTGVFNVLRAVVPPMIEAGGGRIVNISSVAG 147 (250)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCC--CHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf 999999999769998999899889998--90239999---9999999851899999999899999749973999914555
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCEEEEEEEEC
Q ss_conf 64167899867899999999853288764221112357676543345650137528820579999818995899999972
Q gi|254780279|r 160 HHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAY 239 (280)
Q Consensus 160 HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~s~R~g~~~g~H~V~f~~~~E~i~i~H~a~ 239 (280)
.....-.+|.++++.-...+.+..-.++ .+..|.+.++.-|-+-.+-.=.+..+.......+...
T Consensus 148 ~~~~~~~~~Y~~sK~Al~~l~~~la~e~---------------~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p~ 212 (250)
T PRK12825 148 LKGNPGQVNYAAAKAGLVGLTKALAREL---------------AERGIRVNAVAPGAIDTEMIEATIEEAREAILKLIPL 212 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH---------------HHHCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 5789996778999999999999999986---------------0429299999728887703212588899999826998
Q ss_pred CHHHHHHHHHHHHHHHHCCCC
Q ss_conf 737679999999999834899
Q gi|254780279|r 240 DRRIFARGSLTAALWAKSQIP 260 (280)
Q Consensus 240 ~R~~Fa~Gal~aa~~l~~~~~ 260 (280)
.|-.-..=+..++.||.+...
T Consensus 213 ~R~~~pedva~~v~fL~s~~s 233 (250)
T PRK12825 213 GRLGTPEEIADAVAFLASDAA 233 (250)
T ss_pred CCCCCHHHHHHHHHHHHCCHH
T ss_conf 998399999999999968622
No 457
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=66.81 E-value=10 Score=18.25 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 999899-8779999999983899789999964
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVR 38 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~ 38 (280)
|.|.|+ |=.|+.+++.+.+...-+++ ++|.
T Consensus 2 ILVTGgaGFIGS~l~~~L~~~G~~~V~-~~Dn 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDIL-VVDN 32 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEE-EEEC
T ss_conf 999405979999999999977998099-9978
No 458
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=66.36 E-value=6.7 Score=19.45 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=46.1
Q ss_pred CCHHHH--CCCCCCCCCCCC----CHHHHHCCCCEEEEEECCCHH-HHHHHHHHHCCCEEEEEECCCCHHHH--HHHH-H
Q ss_conf 553666--087546754556----857852135504763101024-78887643237215765022231358--9998-7
Q gi|254780279|r 46 QDVGNF--VGISPMGIKFSD----NLAMAIQSVDGIIDFSSPALT-LQSLNISAQHNIVHIIGTTGFSVKEN--EVIS-S 115 (280)
Q Consensus 46 ~d~~~~--~~~~~~~v~i~~----dl~~~~~~~DViIDFT~P~~~-~~~~~~a~~~g~~vViGTTG~~~e~~--~~l~-~ 115 (280)
.|+.+. -...+.+|.+|+ |.+.+.+.+-.|| |+-..- ..-+=.|.+.|+|.|+||+.=|+.-. +.+- +
T Consensus 417 ~~~~e~k~~~~~~GdiLVT~mTDPDWeP~MK~AsAIV--Tn~GG~TcHAAIVaRELGiPAVVG~~~AT~~lkdG~~VTVd 494 (877)
T TIGR01418 417 LDLKEMKVDKFEEGDILVTDMTDPDWEPVMKRASAIV--TNEGGRTCHAAIVARELGIPAVVGTGDATKKLKDGEEVTVD 494 (877)
T ss_pred CCHHHHCCCCCCCCCEEEECCCCCCCHHHCCCCCEEE--ECCCCCHHHHHHHHHHCCCCCEECCCHHHHHHCCCCEEEEE
T ss_conf 5743432044388646875787428121221303047--07887500899998755888266470345651087868985
Q ss_pred HHC-CCCCEECC
Q ss_conf 403-55521000
Q gi|254780279|r 116 FAR-NAPIVKSS 126 (280)
Q Consensus 116 ~s~-~~~il~ap 126 (280)
+++ ..+++|+.
T Consensus 495 c~eGdtG~VY~G 506 (877)
T TIGR01418 495 CAEGDTGYVYAG 506 (877)
T ss_pred CCCCCCCCEECC
T ss_conf 444881313457
No 459
>PRK00811 spermidine synthase; Provisional
Probab=66.30 E-value=10 Score=18.19 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=59.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHH--CCCHHHHC----CCCCCCCCCCCCHHHH---HCCCC
Q ss_conf 887379998998779999999983899789999964898020--45536660----8754675455685785---21355
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLI--GQDVGNFV----GISPMGIKFSDNLAMA---IQSVD 73 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~--g~d~~~~~----~~~~~~v~i~~dl~~~---~~~~D 73 (280)
..|=||.|+|.|--| +++++.+.+.++-+-.++-++.-.. -+-++++. ..+...+.+.|-...+ -...|
T Consensus 77 ~~pk~VLIiGGGDGg--~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~yD 154 (283)
T PRK00811 77 PNPKKVLIIGGGDGG--TLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSFD 154 (283)
T ss_pred CCCCEEEEECCCCHH--HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCC
T ss_conf 997748995687479--999984278856799994689999999998388631330297159982789999984523554
Q ss_pred EEE-EEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEE--CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 047-631010247888764323721576502223135899987403555210--0001156899999999999861
Q gi|254780279|r 74 GII-DFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVK--SSNMSLGINFLGFLVETAAEYL 146 (280)
Q Consensus 74 ViI-DFT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~--apN~SiGv~ll~~l~~~~a~~l 146 (280)
||| |.|-|..-... =|+.+..+.+++.-+.-+|+. +.+.-+-...+..+.+.+.+.|
T Consensus 155 vII~D~tDP~gpa~~----------------Lft~~Fy~~~~~~L~~~Gi~v~Q~~sp~~~~~~~~~~~~~l~~~F 214 (283)
T PRK00811 155 VIIVDSTDPVGPAEG----------------LFTKEFYENCKRALKEGGIFVAQSESPFLQADEIKDLHKKLREVF 214 (283)
T ss_pred EEEEECCCCCCHHHH----------------HCCHHHHHHHHHHCCCCCEEEECCCCHHHCHHHHHHHHHHHHHHC
T ss_conf 899808998864455----------------345999999998539995899927983206999999999999868
No 460
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=65.90 E-value=10 Score=18.13 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=49.8
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHH-CCCCE-EEEEECCC
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852-13550-47631010
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAI-QSVDG-IIDFSSPA 82 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~-~~~DV-iIDFT~P~ 82 (280)
-++.|.|| +-.|+++++.+++. ++.|+ .+.|+..+... ...+++... -.+++ -+|.|.|+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~-g~~li-LvaR~~~kL~~---------------la~~l~~~~~v~v~vi~~DLs~~~ 69 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARR-GYNLI-LVARREDKLEA---------------LAKELEDKTGVEVEVIPADLSDPE 69 (265)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEE-EEECCHHHHHH---------------HHHHHHHHHCCEEEEEECCCCCHH
T ss_conf 67999778864899999999977-99799-99676999999---------------999998730862799977678836
Q ss_pred HHHHHHHHHHHC--CCEEEEEECCCC
Q ss_conf 247888764323--721576502223
Q gi|254780279|r 83 LTLQSLNISAQH--NIVHIIGTTGFS 106 (280)
Q Consensus 83 ~~~~~~~~a~~~--g~~vViGTTG~~ 106 (280)
............ .+.+.|---||.
T Consensus 70 ~~~~l~~~l~~~~~~IdvLVNNAG~g 95 (265)
T COG0300 70 ALERLEDELKERGGPIDVLVNNAGFG 95 (265)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 79999999982488523899778747
No 461
>PRK09620 hypothetical protein; Provisional
Probab=65.88 E-value=6.7 Score=19.48 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=20.2
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 737999899-87799999999838997899999
Q gi|254780279|r 5 PMRISVLGG-GRMGQALIKEIHNNPSITLHSII 36 (280)
Q Consensus 5 ~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i 36 (280)
|+|..=.-+ ||||.+++++.... +.+++-+.
T Consensus 19 pVR~ItN~SSGkmG~aiA~~a~~~-GA~Vtli~ 50 (229)
T PRK09620 19 QVRGHTNMAKGTIGRIIAEELISK-GAHVIYLH 50 (229)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHC-CCEEEEEE
T ss_conf 845627768239999999999977-99799994
No 462
>PRK10403 transcriptional regulator NarP; Provisional
Probab=65.66 E-value=11 Score=18.10 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCC-CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH-HCCCCEE-E
Q ss_conf 998-8737999899-8779999999983899789999964898020455366608754675455685785-2135504-7
Q gi|254780279|r 1 MHQ-SPMRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA-IQSVDGI-I 76 (280)
Q Consensus 1 M~~-~~IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~-~~~~DVi-I 76 (280)
|++ +||||.|+-- --+-..+...+...+++++++.+.... +. ++.+ -..+|++ +
T Consensus 1 m~~~~pirIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~------~~----------------~~~~~~~~pDlvll 58 (215)
T PRK10403 1 MPEATPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGA------SA----------------IDLANRLDIDVILL 58 (215)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHH------HH----------------HHHHHHCCCCEEEE
T ss_conf 988997579998398999999999997589928999989999------99----------------99986449989998
Q ss_pred EEECCCH-HHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 6310102-478887643237--215765022231358999874035552100001156
Q gi|254780279|r 77 DFSSPAL-TLQSLNISAQHN--IVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 77 DFT~P~~-~~~~~~~a~~~g--~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG 131 (280)
|...|.. ..+.++...+.. .++|+ -|++.+++ ...+.+...+.-++.-+.+..
T Consensus 59 D~~lp~~~G~~~~~~l~~~~p~~~iiv-lt~~~~~~-~~~~al~~Ga~gyl~K~~~~~ 114 (215)
T PRK10403 59 DLNMKGMSGLDTLNALRRDGVTAQIII-LTVSDASS-DIFALIDAGADGYLLKDSDPE 114 (215)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCEEE-EECCCCHH-HHHHHHHCCCCEEEECCCCHH
T ss_conf 089989987412335654188773688-63243236-789987468766884899999
No 463
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=65.30 E-value=11 Score=18.06 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=30.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC---CCEEEEE--EECCCCHHHCCCHHHHCCCCCCCCCCC
Q ss_conf 37999899877999999998389---9789999--964898020455366608754675455
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNP---SITLHSI--IVRSGSPLIGQDVGNFVGISPMGIKFS 62 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~---~~eLv~~--i~~~~~~~~g~d~~~~~~~~~~~v~i~ 62 (280)
+||.|+|||..|..-+-.+++.+ |+-|+.+ ++-.. +=..-|..|..-..--+.+++
T Consensus 2 kKisvIGAGfvGaTTAf~lA~KeLard~VLlDiPqvEg~p-qGKALDmyEasPv~gFD~kvT 62 (308)
T TIGR01763 2 KKISVIGAGFVGATTAFLLAEKELARDVVLLDIPQVEGVP-QGKALDMYEASPVEGFDVKVT 62 (308)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCC-CCCHHHHHHCCCCCCCCCEEE
T ss_conf 5589970686125899999867406716898505558688-863322110277663112362
No 464
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=65.06 E-value=11 Score=18.03 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=16.1
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 3550476310-1024788876432372157650
Q gi|254780279|r 71 SVDGIIDFSS-PALTLQSLNISAQHNIVHIIGT 102 (280)
Q Consensus 71 ~~DViIDFT~-P~~~~~~~~~a~~~g~~vViGT 102 (280)
++|+|. ++ +....-....+...++|.++.+
T Consensus 80 ~~DiIh--~h~~~~~~~~~~~~~~~~~~~~I~h 110 (358)
T cd03812 80 KYDIVH--VHGSSASGFILLAAKKAGVKVRIAH 110 (358)
T ss_pred CCCEEE--ECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999--8575068999999998599989998
No 465
>PRK05884 short chain dehydrogenase; Provisional
Probab=65.00 E-value=11 Score=18.02 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=39.3
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
|||.|.|+ +-+|+++++...+ .+..++ +++|+..+.. .. ...++.--++.|.+.|+..
T Consensus 1 ~~VlVTGgs~GIG~aiA~~la~-~Ga~V~-i~~r~~~~l~-----~~--------------~~el~~~~~~~d~~d~~~~ 59 (223)
T PRK05884 1 MEVLVTGGDTDLGRTIAEGFRN-DGHKVT-LVGARRDDLE-----VA--------------AKELDVDAIVCDNTDPASL 59 (223)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEE-EEECCHHHHH-----HH--------------HHHCCCCEEEEECCCHHHH
T ss_conf 9399987887999999999998-799999-9959878999-----99--------------8534876899852788999
Q ss_pred HHHHHHHHH
Q ss_conf 788876432
Q gi|254780279|r 85 LQSLNISAQ 93 (280)
Q Consensus 85 ~~~~~~a~~ 93 (280)
.+....+.+
T Consensus 60 ~~~~~~~~~ 68 (223)
T PRK05884 60 EEARGLFPH 68 (223)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 466
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=64.88 E-value=11 Score=18.11 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHCCCEEEE
Q ss_conf 10247888764323721576
Q gi|254780279|r 81 PALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 81 P~~~~~~~~~a~~~g~~vVi 100 (280)
++.-.+-++.|.++|..-|.
T Consensus 77 ~~~E~eK~~~A~~~GADtiM 96 (433)
T PRK13352 77 IEEELEKAKVAVKYGADTIM 96 (433)
T ss_pred HHHHHHHHHHHHHHCCCEEE
T ss_conf 89999999999982998578
No 467
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=64.82 E-value=11 Score=18.00 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC----CCCEE-EEEEC---CCHHHHHH
Q ss_conf 999999998389978999996489802045536660875467545568578521----35504-76310---10247888
Q gi|254780279|r 17 GQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ----SVDGI-IDFSS---PALTLQSL 88 (280)
Q Consensus 17 G~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~----~~DVi-IDFT~---P~~~~~~~ 88 (280)
|-.-++++.+.-++-+.|.+-+.- +..++.|+..++++.. .+|+| +|.|. |+...+.+
T Consensus 20 ~~~dI~aik~~v~vPIIGi~K~~~--------------~~~~VyITPt~~ev~~l~~aGadiIA~DaT~R~RP~~~~~lv 85 (192)
T pfam04131 20 GVNNIKAIRAIVDLPIIGIVKRDL--------------PDSPVRITPTMKDIDELANAGADIIALDGTDRPRPVDIESFI 85 (192)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCC--------------CCCCCEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 999999999858998799985678--------------999816558899999999859999998467898975899999
Q ss_pred HHHHHCCC
Q ss_conf 76432372
Q gi|254780279|r 89 NISAQHNI 96 (280)
Q Consensus 89 ~~a~~~g~ 96 (280)
+.+.+.+.
T Consensus 86 ~~i~~~~~ 93 (192)
T pfam04131 86 KRIKEKGQ 93 (192)
T ss_pred HHHHHHCC
T ss_conf 99998199
No 468
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=64.72 E-value=11 Score=17.99 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=43.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 3799989987799999999838-997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
-+|.|+|.|+.+..=++.+.+. .++.++ ... ...++.++..+.-..-.+. ...++.+++||-.|.-..+
T Consensus 14 k~vLVvGGG~VA~rK~~~Ll~~ga~VtVv---sp~----~~~el~~l~~i~~~~r~~~---~~dl~~~~lViaATdd~~l 83 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVV---SPE----ICEEMKELPYITWKQKTFS---NDDIKDAHLIYAATNQHAV 83 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---CCC----CCHHHHHCCCEEEECCCCC---HHHHCCCEEEEECCCCHHH
T ss_conf 87999889899999999998787969999---998----6899984557088704678---4683784399986899899
Q ss_pred HHHHHHHHHCCC
Q ss_conf 788876432372
Q gi|254780279|r 85 LQSLNISAQHNI 96 (280)
Q Consensus 85 ~~~~~~a~~~g~ 96 (280)
...+..+.+.+.
T Consensus 84 N~~i~~~a~~~~ 95 (157)
T PRK06719 84 NMMVKQAAHDFQ 95 (157)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997789
No 469
>pfam09754 PAC2 PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.
Probab=64.68 E-value=7 Score=19.33 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=54.9
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC-HHHCCCHHHHC----CCCCCCCCCCCCHHHHHCCCCEEE---EEEC
Q ss_conf 998998779999999983899789999964898-02045536660----875467545568578521355047---6310
Q gi|254780279|r 9 SVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS-PLIGQDVGNFV----GISPMGIKFSDNLAMAIQSVDGII---DFSS 80 (280)
Q Consensus 9 ~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~-~~~g~d~~~~~----~~~~~~v~i~~dl~~~~~~~DViI---DFT~ 80 (280)
+..|+|..|+..+..+.+.-+++.++.++.+.- ++.+....... +.......++. .++-|+++ |+..
T Consensus 4 G~~~~G~vg~ia~~~Li~~l~~~~vg~id~~~~~p~~~~rP~v~~~~~~~~~~p~~~ly~-----~~~~~l~vl~~~~p~ 78 (177)
T pfam09754 4 GFPDAGNVGQLAVDHLIESLEAEKVGEIDSDELFPFRGRRPQVTFDEGGKILWPPLELYY-----LKDRDLLVLQGRSPE 78 (177)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCEEECCCEEEEE-----ECCCCEEEEEECCCC
T ss_conf 676566899999999999749859999977666675567974999689677779749997-----079998999967889
Q ss_pred C-----CHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 1-----0247888764323721576502223135
Q gi|254780279|r 81 P-----ALTLQSLNISAQHNIVHIIGTTGFSVKE 109 (280)
Q Consensus 81 P-----~~~~~~~~~a~~~g~~vViGTTG~~~e~ 109 (280)
| +.+...++++.+.|+..|+.-+|+....
T Consensus 79 p~~~~~~f~~~i~~~~~~~gv~~vi~lgg~~~~~ 112 (177)
T pfam09754 79 PPGRWYEFAEAILDLAEELGVSEVITLGGLPAGV 112 (177)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEECCEECCC
T ss_conf 8079999999999999982998899974781899
No 470
>PRK11728 hypothetical protein; Provisional
Probab=64.47 E-value=11 Score=17.96 Aligned_cols=132 Identities=12% Similarity=0.155 Sum_probs=66.3
Q ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC-CHHH------------HH---
Q ss_conf 799989987799999999838-997899999648980204553666087546754556-8578------------52---
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNN-PSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD-NLAM------------AI--- 69 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~-~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~-dl~~------------~~--- 69 (280)
-|+|+|+|=+|-+++..+++. ++.+++ ++++.+....++.- .-.+.-..|+.... ++.. ..
T Consensus 4 DvvIIGgGIvG~siA~~Ls~~~~~~~V~-vlEke~~~g~~~S~-rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~~~ 81 (400)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQDRYPGARIA-LLEKESGPARHQTG-HNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (400)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEE-EEECCCCCCCCCCC-CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 0999996799999999999559998399-99689997563353-242321564358999999999999999999999985
Q ss_pred ----CCCCEEEEEECCC---HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHH-H-HHHHHHHH
Q ss_conf ----1355047631010---2478887643237215765022231358999874035552100001156-8-99999999
Q gi|254780279|r 70 ----QSVDGIIDFSSPA---LTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLG-I-NFLGFLVE 140 (280)
Q Consensus 70 ----~~~DViIDFT~P~---~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiG-v-~ll~~l~~ 140 (280)
+.+.-+|-.+.++ ......+.+.++|+++=. ++.+++.+++-..+...-+++|+..+- . .++..+++
T Consensus 82 ~i~~~~~GkliVA~~~~e~~~L~~l~~~~~~ngv~~~~----l~~~ei~~~eP~v~~~~al~~p~tgivD~~~l~~al~~ 157 (400)
T PRK11728 82 GIPYEVCGKLLVATSELELERMEALYERAAANGIEVER----LDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAE 157 (400)
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEE----ECHHHHHHHCCCCCCCCEEECCCCEEECHHHHHHHHHH
T ss_conf 99921168699977999999999999999856986289----67999998688654323597687727789999999999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780279|r 141 TAAE 144 (280)
Q Consensus 141 ~~a~ 144 (280)
.+.+
T Consensus 158 ~a~~ 161 (400)
T PRK11728 158 LIQA 161 (400)
T ss_pred HHHH
T ss_conf 9997
No 471
>PRK06940 short chain dehydrogenase; Provisional
Probab=64.16 E-value=11 Score=17.92 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=47.6
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCC-CCEEEEEECCCHH
Q ss_conf 799989-98779999999983899789999964898020455366608754675455685785213-5504763101024
Q gi|254780279|r 7 RISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQS-VDGIIDFSSPALT 84 (280)
Q Consensus 7 kV~I~G-aGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~-~DViIDFT~P~~~ 84 (280)
||+|+| +|-+|+++++.+. .+..++ +++++..+. .+-. +.+...-.+ .-+..|.|.++.+
T Consensus 6 kV~v~tGa~GIG~aiA~~la--~Ga~vv-i~~~~~~~l-~~~~--------------~~l~~~g~~~~~~~~Dvs~~~~v 67 (277)
T PRK06940 6 EVVVVIGAGGMGQAIARRVG--SGKTVL-LADYNEENL-QAVA--------------RTLREAGFDVITQQVDVSSRESV 67 (277)
T ss_pred CEEEECCCCHHHHHHHHHHH--HCCEEE-EEECCHHHH-HHHH--------------HHHHHCCCEEEEEECCCCCHHHH
T ss_conf 29999781699999999998--199899-998988999-9999--------------99872288299998257998999
Q ss_pred HHHHHHHHHCC-CEEEEEECCCC
Q ss_conf 78887643237-21576502223
Q gi|254780279|r 85 LQSLNISAQHN-IVHIIGTTGFS 106 (280)
Q Consensus 85 ~~~~~~a~~~g-~~vViGTTG~~ 106 (280)
....+.+.+.| +.+++-..|.+
T Consensus 68 ~~l~~~~~~~G~idiLVnnAG~~ 90 (277)
T PRK06940 68 KALAQTAATLGAVTGLVHTAGVS 90 (277)
T ss_pred HHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999999869987999888678
No 472
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=63.92 E-value=11 Score=17.89 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=61.7
Q ss_pred EEEEECCCH---HHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 799989987---79999999983899789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 7 RISVLGGGR---MGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 7 kV~I~GaGk---MG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
||.|.|.|| +||.++-.+... ++ -+.+..+... ..-| .-.+.+-||+|-+|...-
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s~-G~--~a~fv~p~ea-~hgd------------------lg~i~~~DvviaiS~SGe 98 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLAST-GT--PAFFVGPAEA-LHGD------------------LGMITPGDVVIAISGSGE 98 (202)
T ss_pred CEEEECCCHHHHHHHHHHHHHHCC-CC--CEEEECCCHH-CCCC------------------CCCCCCCCEEEEEECCCC
T ss_conf 489986872689999999999735-99--5599667301-0377------------------567898889999808971
Q ss_pred H---HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC-------EECCC------HHHHHHHHHHHHHHHH
Q ss_conf 4---78887643237215765022231358999874035552-------10000------1156899999999999
Q gi|254780279|r 84 T---LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPI-------VKSSN------MSLGINFLGFLVETAA 143 (280)
Q Consensus 84 ~---~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~i-------l~apN------~SiGv~ll~~l~~~~a 143 (280)
+ ...+++|.+.+.++| +-|+..+..+.+..++-=.+|+ =.+|- ..+|..++.-+.+...
T Consensus 99 T~el~~~~~~aK~~g~~li-aiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l~~gdal~~~L~e~~~ 173 (202)
T COG0794 99 TKELLNLAPKAKRLGAKLI-AITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGDALAGTLFEARG 173 (202)
T ss_pred HHHHHHHHHHHHHCCCCEE-EEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 7799999999997599489-99589998678746869973674446867676520367887633088899999837
No 473
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=63.82 E-value=11 Score=17.88 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=23.9
Q ss_pred HCCCCCCCCCCCCCHHHHHCCCCEEEEEECCC-HHHHHHH
Q ss_conf 60875467545568578521355047631010-2478887
Q gi|254780279|r 51 FVGISPMGIKFSDNLAMAIQSVDGIIDFSSPA-LTLQSLN 89 (280)
Q Consensus 51 ~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~-~~~~~~~ 89 (280)
.....+.|+.+++|..++.+...+.|-||+=. .+..+++
T Consensus 62 w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iar 101 (340)
T COG4007 62 WKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAR 101 (340)
T ss_pred HHHHHHCCCEEECCCHHHHHCCEEEEEECCCCHHHHHHHH
T ss_conf 9999865827742735553056589996265326678999
No 474
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=63.78 E-value=11 Score=17.87 Aligned_cols=91 Identities=16% Similarity=0.164 Sum_probs=55.4
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHH-HCCCCEE-EEE
Q ss_conf 99887379998998779999999983899789999964898020455366608754675455685785-2135504-763
Q gi|254780279|r 1 MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMA-IQSVDGI-IDF 78 (280)
Q Consensus 1 M~~~~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~-~~~~DVi-IDF 78 (280)
|++++|||.|+=-=..=+..++.+....++++..+.+.. +. +..+ -..+|+| .|.
T Consensus 1 M~~~~~~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~-------~a----------------l~~l~~~~~DlvllD~ 57 (441)
T PRK10365 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGR-------QA----------------LEQVREQVFDLVLCDV 57 (441)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-------HH----------------HHHHHCCCCCEEEECC
T ss_conf 998998599983989999999999997799899989999-------99----------------9998648999999889
Q ss_pred ECCCH-HHHHHHHHHHCC--CEEEEEECCCCHHH--HHHHHH
Q ss_conf 10102-478887643237--21576502223135--899987
Q gi|254780279|r 79 SSPAL-TLQSLNISAQHN--IVHIIGTTGFSVKE--NEVISS 115 (280)
Q Consensus 79 T~P~~-~~~~~~~a~~~g--~~vViGTTG~~~e~--~~~l~~ 115 (280)
..|+. ..+.++...+.. .|+|+ .||+++-+ .+.++.
T Consensus 58 ~mp~~~Gl~lL~~l~~~~p~~pvIv-iT~~~~~~~av~A~k~ 98 (441)
T PRK10365 58 RMAEMDGIATLKEIKALNPAIPVLI-MTAYSSVETAVEALKT 98 (441)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEE-EECCCCHHHHHHHHHH
T ss_conf 9999989999999984298982899-9699998999999982
No 475
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=63.74 E-value=11 Score=17.87 Aligned_cols=23 Identities=9% Similarity=-0.006 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 987799999999838997899999
Q gi|254780279|r 13 GGRMGQALIKEIHNNPSITLHSII 36 (280)
Q Consensus 13 aGkMG~~ii~~i~~~~~~eLv~~i 36 (280)
+.|.=..+++.+.+ .++++.-.+
T Consensus 14 ~e~~~~~la~~L~~-~G~~V~v~~ 36 (360)
T cd04951 14 AEKQVVDLADQFVA-KGHQVAIIS 36 (360)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEE
T ss_conf 79999999999997-699899998
No 476
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.73 E-value=11 Score=17.87 Aligned_cols=100 Identities=13% Similarity=0.269 Sum_probs=55.0
Q ss_pred CCCCCEEEEEEC-CCH-----HHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCE
Q ss_conf 998873799989-987-----79999999983899789999964898020455366608754675455685785213550
Q gi|254780279|r 1 MHQSPMRISVLG-GGR-----MGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDG 74 (280)
Q Consensus 1 M~~~~IkV~I~G-aGk-----MG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DV 74 (280)
|+ ++=+|+|+. .++ +.+.+++.+. ..++++...-+ .....+.+... ........++.+...+++|+
T Consensus 1 m~-~~R~V~IV~k~~~~~a~~~a~~l~~~L~-~~g~~v~v~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Dl 72 (303)
T PRK03372 1 MT-AERTVLLVAHTGRDEATESARRVVKQLG-DAGIGVRVLAA--EAADLPDDMRA----LGVEIEVVDADPDAADGCEL 72 (303)
T ss_pred CC-CCCEEEEEECCCCHHHHHHHHHHHHHHH-HCCCEEEEEEC--CCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCE
T ss_conf 99-8888999970899899999999999999-78898999704--01002444555----56542234532233578558
Q ss_pred EEEEECCCHHHHHHHHHHHCCCEEE---EEECCCCHH
Q ss_conf 4763101024788876432372157---650222313
Q gi|254780279|r 75 IIDFSSPALTLQSLNISAQHNIVHI---IGTTGFSVK 108 (280)
Q Consensus 75 iIDFT~P~~~~~~~~~a~~~g~~vV---iGTTG~~~e 108 (280)
+|-+---...+..++.+...++|++ .|+=||-.+
T Consensus 73 vi~lGGDGT~L~aar~~~~~~iPilGiN~G~lGFLt~ 109 (303)
T PRK03372 73 VLVLGGDGTFLRAAELARNADVPVLGVNLGHVGFLAE 109 (303)
T ss_pred EEEECCCHHHHHHHHHHCCCCCCEEEEECCCCEEECC
T ss_conf 9997787899999998444799889872598213124
No 477
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=63.58 E-value=2.5 Score=22.39 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=20.0
Q ss_pred CHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0089999864-167899867899999999853
Q gi|254780279|r 152 WDFEILEMHH-RRKLDSPSGTALLLGEAIANG 182 (280)
Q Consensus 152 ~dieI~E~HH-~~K~DaPSGTA~~la~~i~~~ 182 (280)
.|+-|+=.|- ..-...|+---+.+|+.+.+.
T Consensus 171 ~D~vIv~~HwG~E~~~~p~~~q~~~a~~lida 202 (237)
T pfam09587 171 ADIVIVSLHWGVEYQYEPTPEQRELAHALIDA 202 (237)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99999987756678769999999999999977
No 478
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.57 E-value=12 Score=17.85 Aligned_cols=87 Identities=10% Similarity=0.123 Sum_probs=43.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCH-HHHHCCCCEEEEEECCCHH
Q ss_conf 379998998779999999983899789999964898020455366608754675455685-7852135504763101024
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL-AMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl-~~~~~~~DViIDFT~P~~~ 84 (280)
-+|.|+|.|+++..=++.+.+.. ..+. ++...-+ .++..+....... .+.... ...++.+++||-.|.-...
T Consensus 11 k~vLVVGGG~vA~rK~~~Ll~~g-A~Vt-Vvsp~~~----~el~~l~~~~~i~-~~~~~~~~~dl~~~~lViaAT~d~~~ 83 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG-AHIT-VISPEIT----ENLVKLVEEGKIR-WKEKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE-EECCCCC----HHHHHHHHCCCCE-EEECCCCHHHHCCCCEEEECCCCHHH
T ss_conf 86999889899999999998689-9699-9869999----8999999769944-76167886675167044552798999
Q ss_pred HHHHHHHHHCCCEEE
Q ss_conf 788876432372157
Q gi|254780279|r 85 LQSLNISAQHNIVHI 99 (280)
Q Consensus 85 ~~~~~~a~~~g~~vV 99 (280)
...+..+.+.++.+-
T Consensus 84 N~~i~~~~~~~~lvN 98 (202)
T PRK06718 84 NEAVAEALPENALFN 98 (202)
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999865448757
No 479
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=63.15 E-value=12 Score=17.80 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHHH-HHHHHHHCCCCCEECCCH
Q ss_conf 0102478887643237215765022231358-999874035552100001
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKEN-EVISSFARNAPIVKSSNM 128 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~-~~l~~~s~~~~il~apN~ 128 (280)
.|+-..+.+++..+.+.|++++| |+.+-+ ..|+.+....|++||.+=
T Consensus 144 dpekfa~ave~v~~~~~pv~l~s--~dpevmkaaLev~~dqkPllYaAte 191 (467)
T COG1456 144 DPEKFAEAVEKVAEAGLPVILCS--FDPEVMKAALEVVKDQKPLLYAATE 191 (467)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE--CCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 97999999999986589679995--7999999999876126852543320
No 480
>KOG0024 consensus
Probab=63.15 E-value=12 Score=17.79 Aligned_cols=120 Identities=15% Similarity=0.113 Sum_probs=57.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HCCCHHHHCCCCCCCCCCCCCHHHHH------CCCCEEEEEE
Q ss_conf 7999899877999999998389978999996489802-04553666087546754556857852------1355047631
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-IGQDVGNFVGISPMGIKFSDNLAMAI------QSVDGIIDFS 79 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-~g~d~~~~~~~~~~~v~i~~dl~~~~------~~~DViIDFT 79 (280)
||.|.|+|-.|-.-...... =+..=+.+.+-...+. ..+.+|...-.........+++.+.+ ..+|+.+|+|
T Consensus 172 ~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCs 250 (354)
T KOG0024 172 KVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCS 250 (354)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 68997676899999999987-49872899606777999999829757730445565899999998641666798689866
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC---CCEECCC
Q ss_conf 01024788876432372157650222313589998740355---5210000
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA---PIVKSSN 127 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~---~il~apN 127 (280)
--+.+.+..-.|.+.+=.+|+.--|-..-+...+.-+.+++ +.+...|
T Consensus 251 G~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~ 301 (354)
T KOG0024 251 GAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCN 301 (354)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHEEEEEEEEEECC
T ss_conf 604668989987512878999654787653573352233356464222133
No 481
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=63.06 E-value=12 Score=17.78 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=25.3
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 7999899-87799999999838997899999648
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRS 39 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~ 39 (280)
-|.|.+| |-.|+.+ -++++.++..++|+....
T Consensus 153 tvvVSaAaGaVGsvv-gQiAKlkG~rVVGiaGg~ 185 (340)
T COG2130 153 TVVVSAAAGAVGSVV-GQIAKLKGCRVVGIAGGA 185 (340)
T ss_pred EEEEEECCCCCCHHH-HHHHHHHCCEEEEECCCH
T ss_conf 899973466530688-999886077599965888
No 482
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=62.70 E-value=12 Score=17.74 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=50.6
Q ss_pred EECC-CHHHHHHHHHHHHCC-CCEEEEEEECCCCHHHCCCHHHHC-------------------CCCCCCCCCCCC---H
Q ss_conf 9899-877999999998389-978999996489802045536660-------------------875467545568---5
Q gi|254780279|r 10 VLGG-GRMGQALIKEIHNNP-SITLHSIIVRSGSPLIGQDVGNFV-------------------GISPMGIKFSDN---L 65 (280)
Q Consensus 10 I~Ga-GkMG~~ii~~i~~~~-~~eLv~~i~~~~~~~~g~d~~~~~-------------------~~~~~~v~i~~d---l 65 (280)
|.|+ |-.|+..++.+.+++ ++++++....++...+-+-+.+|- .....++.+... +
T Consensus 1 ILGSTGSIG~~tL~Vi~~~~~~f~V~~Lsa~~n~~~L~~q~~~f~Pk~v~i~d~~~~~~lk~~l~~~~~~~~v~~G~~~l 80 (392)
T PRK12464 1 ILGSTGSIGTSTLDVVAAHPERFKVVALTANYNIELLVQQIKRFQPRVVSVADAELADTLRARLSAAGSNTKITYGTDGL 80 (392)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf 95957598999999999486870899999388799999999994999999948899999999864068883798688999
Q ss_pred HHHH--CCCCEEEEEECCCHHHHHHHHHHHCCCEEEE
Q ss_conf 7852--1355047631010247888764323721576
Q gi|254780279|r 66 AMAI--QSVDGIIDFSSPALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 66 ~~~~--~~~DViIDFT~P~~~~~~~~~a~~~g~~vVi 100 (280)
.++. .++|++|-...--+.+.-.-.|+++|+.+-+
T Consensus 81 ~~~~~~~~~D~vv~Ai~G~aGL~pt~~ai~~gk~iaL 117 (392)
T PRK12464 81 IDVATHDGSDLVVSSIVGVAGLLPTLAALKAGKDIAL 117 (392)
T ss_pred HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9997077889899944535346999999974990787
No 483
>KOG2250 consensus
Probab=62.55 E-value=12 Score=17.72 Aligned_cols=121 Identities=14% Similarity=0.205 Sum_probs=74.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHHCCCCCC--------CCCCC-------CCHHHH
Q ss_conf 37999899877999999998389978999996489802--04553666087546--------75455-------685785
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNFVGISPM--------GIKFS-------DNLAMA 68 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~~~~~~~--------~v~i~-------~dl~~~ 68 (280)
-|+.|-|+|+.|+.....+. ..+-.++++.|.+..-+ .|-|..++...... +..-+ .-+...
T Consensus 252 kr~~i~G~Gnv~~~aa~~l~-~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~~~ 330 (514)
T KOG2250 252 KRVVIQGFGNVGGHAAKKLS-EKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGLPPWTL 330 (514)
T ss_pred EEEEEECCCCHHHHHHHHHH-HCCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 28998578715889999998-66997999976730698999989899999998642502564201256643125750665
Q ss_pred HCCCCEEEEEEC-CCHHHHHHHHHHHCCCEEEE-EECCCCHH-HHHHHHHHHCCCCCEECCCHHHH
Q ss_conf 213550476310-10247888764323721576-50222313-58999874035552100001156
Q gi|254780279|r 69 IQSVDGIIDFSS-PALTLQSLNISAQHNIVHII-GTTGFSVK-ENEVISSFARNAPIVKSSNMSLG 131 (280)
Q Consensus 69 ~~~~DViIDFT~-P~~~~~~~~~a~~~g~~vVi-GTTG~~~e-~~~~l~~~s~~~~il~apN~SiG 131 (280)
..+||+.+-+.. -+...+++......|.++|+ |.-+++.. -.+.+++. .|++.|-.+-.
T Consensus 331 v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~----gvli~Pd~~aN 392 (514)
T KOG2250 331 VEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKA----GVLIIPDIYAN 392 (514)
T ss_pred HHHCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC----CEEEECHHHCC
T ss_conf 751767743376672057659999864786898537899886589999967----93892423226
No 484
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=62.37 E-value=12 Score=17.70 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=41.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEEEECC---CCHH----HCCCHHHHCC----CCCCCCCCCCCHHHHH-CCCC
Q ss_conf 7999899877999999998389-97899999648---9802----0455366608----7546754556857852-1355
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNP-SITLHSIIVRS---GSPL----IGQDVGNFVG----ISPMGIKFSDNLAMAI-QSVD 73 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~-~~eLv~~i~~~---~~~~----~g~d~~~~~~----~~~~~v~i~~dl~~~~-~~~D 73 (280)
||+|+|+|=||..+...+.+.. +..+. .+.|. .+-. .|-.+....+ .....+..+++.+..- .++|
T Consensus 1 ~i~i~G~GA~G~l~ga~L~~~g~~~~V~-~~~R~~r~~~~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 79 (332)
T TIGR00745 1 KIAIIGAGAVGSLYGARLARAGANHDVT-LLARGKRPKQLEALNQEGLRIVSLDGEGVFELKIPVSAATDPETLPPQKAD 79 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEE-EEECCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCEEECCCCCCCCCCCC
T ss_conf 9689951788999999987318995189-998872168899998588389762567750330441220475335787754
Q ss_pred EEEEEEC
Q ss_conf 0476310
Q gi|254780279|r 74 GIIDFSS 80 (280)
Q Consensus 74 ViIDFT~ 80 (280)
++|=++-
T Consensus 80 ~~~~~~K 86 (332)
T TIGR00745 80 LVIITVK 86 (332)
T ss_pred EEEEEEC
T ss_conf 8999703
No 485
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=62.33 E-value=12 Score=17.70 Aligned_cols=132 Identities=9% Similarity=0.083 Sum_probs=63.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCH-HHHHCCCCEEEEEE-CCCH
Q ss_conf 379998998779999999983899789999964898020455366608754675455685-78521355047631-0102
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL-AMAIQSVDGIIDFS-SPAL 83 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl-~~~~~~~DViIDFT-~P~~ 83 (280)
-+|.|+|.|..|..=++.+.+. +..++-+...- ..++..+....... .+.+.. .+.+..++.||-.| .|+.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~-ga~v~Vvs~~~-----~~el~~~~~~~~i~-~~~~~~~~~~~~~~~lviaAt~d~~l 85 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKA-GADVTVVSPEF-----EPELKALIEEGKIK-WIEREFDAEDLDDAFLVIAATDDEEL 85 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEECCCC-----CHHHHHHHHHCCCC-HHHCCCCHHHHCCCEEEEEECCCHHH
T ss_conf 7799989989999999999746-99799987874-----49999999834853-10022363653682499991699899
Q ss_pred HHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCEECCCHHHHHH-HHHHHHHHHHHHHC
Q ss_conf 4788876432372157650-2223135899987403555210000115689-99999999998611
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGT-TGFSVKENEVISSFARNAPIVKSSNMSLGIN-FLGFLVETAAEYLL 147 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViGT-TG~~~e~~~~l~~~s~~~~il~apN~SiGv~-ll~~l~~~~a~~l~ 147 (280)
-....+.|.++++++-+.. ..+.+-..- ..-+.-|+.+|--++=..- +-+.+-+.+-.+|+
T Consensus 86 n~~i~~~a~~~~i~vNv~D~p~~~~f~~P---a~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~~l~ 148 (210)
T COG1648 86 NERIAKAARERRILVNVVDDPELCDFIFP---AIVDRGPLQIAISTGGKSPVLARLLREKIEALLP 148 (210)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCCEEEC---EEECCCCEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999993993560488465856601---0543588799997799774999999999999759
No 486
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=62.33 E-value=12 Score=17.70 Aligned_cols=47 Identities=21% Similarity=0.392 Sum_probs=24.3
Q ss_pred EEEEECCCCEEEEE----EEEC-CHHHHHHHHHHHHHHHH-C-----CCCCCCCHHHHH
Q ss_conf 99981899589999----9972-73767999999999983-4-----899836888982
Q gi|254780279|r 222 SVVIAGEGESITLS----HSAY-DRRIFARGSLTAALWAK-S-----QIPGLYSMRDVL 269 (280)
Q Consensus 222 ~V~f~~~~E~i~i~----H~a~-~R~~Fa~Gal~aa~~l~-~-----~~~G~y~m~dvL 269 (280)
.|+.-++|--+-|. |-+. =--+|+.=+| |+.++. + .++++|.+-.-|
T Consensus 377 ~i~lLaeGRLvNLa~a~GHP~~vMd~SFa~Q~l-a~~~l~~~~~~~~~~~~V~~lP~~l 434 (476)
T PTZ00075 377 HIILLAEGRLVNLGCATGHPSFVMSNSFTNQVL-AQIELWTNRDTGKYPNGVYKLPKKL 434 (476)
T ss_pred EEEEEECCCEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCEEECCHHH
T ss_conf 899996563888526788955860134799999-9999986687210489758788899
No 487
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=62.29 E-value=12 Score=17.69 Aligned_cols=116 Identities=17% Similarity=0.305 Sum_probs=52.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCC---CCHHHHHC-CCCEEEEEE--
Q ss_conf 379998998779999999983899789999964898020455366608754675455---68578521-355047631--
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFS---DNLAMAIQ-SVDGIIDFS-- 79 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~---~dl~~~~~-~~DViIDFT-- 79 (280)
|||.|+|.|==.++|+..+.+++...=+.+.-++. |... +.......+.++ .|++.+.+ .-..=||++
T Consensus 1 MkVLviG~GGREHAla~~l~qs~~v~~~~~apGN~----Gta~--~~~~~~~~~~~~~~~~d~~~~~~FA~~~~idL~~i 74 (459)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNA----GTAR--LAKNKNVAIEITKDVRDIEALVEFAKKKKIDLAVI 74 (459)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCC----CCCC--CHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 95899748705899999873271133667826898----6220--12544411457866300899999998469754880
Q ss_pred CCCHHHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHC------CCC-CEECCCHH
Q ss_conf 0102478--88764323721576502223135899987403------555-21000011
Q gi|254780279|r 80 SPALTLQ--SLNISAQHNIVHIIGTTGFSVKENEVISSFAR------NAP-IVKSSNMS 129 (280)
Q Consensus 80 ~P~~~~~--~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~------~~~-il~apN~S 129 (280)
-|++-+. ++....+.|++++ |=|= ...+++.=|.++| .|| -..--||+
T Consensus 75 GPE~PL~~G~vd~le~~Gi~~F-GP~k-~AA~LE~SK~FaK~fm~~~gIPGta~Y~~Ft 131 (459)
T TIGR00877 75 GPEAPLVLGLVDALEEAGIPVF-GPTK-EAAQLEASKAFAKDFMKRYGIPGTAEYEVFT 131 (459)
T ss_pred CCCCCHHHHHHHHHHHCCCCEE-CCCH-HHHHHHCCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 8741012014778986795145-6887-8864332878999999964898322210008
No 488
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=62.21 E-value=12 Score=17.80 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCEEEE-EECCCCHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 68578521355047631010247888764323721576-502223135899987403555210000115
Q gi|254780279|r 63 DNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHII-GTTGFSVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 63 ~dl~~~~~~~DViIDFT~P~~~~~~~~~a~~~g~~vVi-GTTG~~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
+++.+.++++|++|-++......+.++.|- +..+|. .++|++.=+++..++ +.++|..+|..+-
T Consensus 31 eel~~~~~~~d~li~~~~~~i~~e~l~~~~--~LK~I~~~~~G~D~ID~~~a~~--~gI~V~n~p~~~~ 95 (313)
T pfam00389 31 EELLEAAKDADALIVRSTTPVTAEVLEAAP--GLKVIARRGVGVDNIDLDAATE--RGILVTNVPGYST 95 (313)
T ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHCCC--CCEEEEECCCCCCHHHHHHHHH--CCCEEEECCCCCC
T ss_conf 999998389829998589976899994499--9849998884455305999997--9999998998772
No 489
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=62.11 E-value=12 Score=17.67 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=52.2
Q ss_pred EEEEEECC-CHHHHHHHHHHHHC------CCCEEEEEEECCCCHH--HCCCHHHHCCCC-CC-CCCCC--CCHHHHHCCC
Q ss_conf 37999899-87799999999838------9978999996489802--045536660875-46-75455--6857852135
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNN------PSITLHSIIVRSGSPL--IGQDVGNFVGIS-PM-GIKFS--DNLAMAIQSV 72 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~------~~~eLv~~i~~~~~~~--~g~d~~~~~~~~-~~-~v~i~--~dl~~~~~~~ 72 (280)
|||+|+|. |-.|.-++=-.+.+ .+-+++=+ +|+.-+. ..+...+.++.. -. ++.++ ++ .++-+.+
T Consensus 1 mkIAvLGGTGdqG~GLALRlA~~glmPeG~~~~iIIG-SR~~EkA~EaA~ka~e~l~~~G~d~~i~~~G~~N-~~AA~~a 78 (233)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGLMPEGVDNEIIIG-SRDKEKAEEAAAKALEELGDQGVDRDIKVEGAEN-EEAAKRA 78 (233)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEE-CCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC-HHHHHHC
T ss_conf 9678844888402569999987077878777555770-4884569999999999997089513625754887-7887238
Q ss_pred CEEEEEECCC----HHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 5047631010----2478887643237215765022231
Q gi|254780279|r 73 DGIIDFSSPA----LTLQSLNISAQHNIVHIIGTTGFSV 107 (280)
Q Consensus 73 DViIDFT~P~----~~~~~~~~a~~~g~~vViGTTG~~~ 107 (280)
|||| .|.|- .+++-++--++++|=+|.++-++..
T Consensus 79 DVVi-l~vP~~~~~~~l~~~~~~L~~dK~Vis~~VPl~~ 116 (233)
T TIGR01915 79 DVVI-LAVPFDHVLKTLESIKDELEADKIVISPVVPLAS 116 (233)
T ss_pred CEEE-EEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf 9789-9842222478999999985189289964787500
No 490
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=62.06 E-value=10 Score=18.13 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=17.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 3550476310102478887643237
Q gi|254780279|r 71 SVDGIIDFSSPALTLQSLNISAQHN 95 (280)
Q Consensus 71 ~~DViIDFT~P~~~~~~~~~a~~~g 95 (280)
++||+| ++|+......+...=.|
T Consensus 108 dFDV~I--ATPDmM~~VGkLG~iLG 130 (227)
T TIGR01169 108 DFDVVI--ATPDMMRKVGKLGRILG 130 (227)
T ss_pred CEEEEE--CCHHHHHHHHHHHHHCC
T ss_conf 502588--27577688763310047
No 491
>pfam04016 DUF364 Domain of unknown function (DUF364). Archaeal domain of unknown function.
Probab=62.05 E-value=12 Score=17.66 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.5
Q ss_pred HHHCCCCEEE
Q ss_conf 8521355047
Q gi|254780279|r 67 MAIQSVDGII 76 (280)
Q Consensus 67 ~~~~~~DViI 76 (280)
.++..+|++|
T Consensus 158 ~lLp~~D~vi 167 (229)
T pfam04016 158 ELLPEADVVI 167 (229)
T ss_pred HHCCCCCEEE
T ss_conf 7512488999
No 492
>PRK12320 hypothetical protein; Provisional
Probab=61.73 E-value=12 Score=17.63 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=57.3
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC-CHHHHHCCCCEEEEEE----
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556-8578521355047631----
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD-NLAMAIQSVDGIIDFS---- 79 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~-dl~~~~~~~DViIDFT---- 79 (280)
|+|+|.|+ |-+|+.+...+.. .+.+++|+..+..... ...+ +|.- -.+-| -+.++...+|+||-+.
T Consensus 1 M~i~VT~A~G~lGR~la~rLla-~GH~V~Giar~r~~s~-~~~~-dFV~-----A~iRd~v~~el~~~AD~V~HlA~~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPHDAL-DPRV-DYVC-----ASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCC-CCCC-CEEE-----CHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9478834621567789999986-6872454404798666-7545-5542-----11230999974045554888225568
Q ss_pred -CCC-----HHHHHHHHHHHCCCEEEEEEC-CCCHHHH
Q ss_conf -010-----247888764323721576502-2231358
Q gi|254780279|r 80 -SPA-----LTLQSLNISAQHNIVHIIGTT-GFSVKEN 110 (280)
Q Consensus 80 -~P~-----~~~~~~~~a~~~g~~vViGTT-G~~~e~~ 110 (280)
.|. .+.+.+..+.+.|..+|.-++ +-.++..
T Consensus 73 ~~p~~~~idG~a~V~~A~a~~G~R~vfvs~Aag~p~ly 110 (699)
T PRK12320 73 SAPGGVGITGLAHVANAAARAGARLLFVSQAAGRPELY 110 (699)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHC
T ss_conf 99985463668899999986188179860578980331
No 493
>pfam11017 DUF2855 Protein of unknown function (DUF2855). This family of proteins has no known function.
Probab=61.62 E-value=12 Score=17.61 Aligned_cols=96 Identities=10% Similarity=0.082 Sum_probs=59.2
Q ss_pred EEEEECC-CHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC-CCCEEEEEE-CCC
Q ss_conf 7999899-8779999999983-89978999996489802045536660875467545568578521-355047631-010
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHN-NPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ-SVDGIIDFS-SPA 82 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~-~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~-~~DViIDFT-~P~ 82 (280)
.|.|..| .|.+..++..+.+ .+...++|..+..+-. .-+..|+-. .+..+|++..+.. ..-|+|||+ +++
T Consensus 138 qvii~SASSKTAiglA~~L~~~~~~~~vVGLTS~~N~~-----Fve~lG~YD-~VltYd~i~~l~~~~~sV~VDmAGn~~ 211 (314)
T pfam11017 138 QVVLTSASSKTAIGLAFLLKQRSGGLKVVGLTSARNVA-----FVEGLGCYD-EVLTYDDIDSLDAAAPSVIVDFAGNAA 211 (314)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCHH-----HHHCCCCCE-EEEECCCHHHCCCCCCEEEEECCCCHH
T ss_conf 28994034303888999998518998579962885442-----665468741-676322354358789889998889989
Q ss_pred HHHHHHHH-HHHCCCEEEEEECCCCHH
Q ss_conf 24788876-432372157650222313
Q gi|254780279|r 83 LTLQSLNI-SAQHNIVHIIGTTGFSVK 108 (280)
Q Consensus 83 ~~~~~~~~-a~~~g~~vViGTTG~~~e 108 (280)
.....-.. --+....+.||-|-|.+.
T Consensus 212 vl~~Lh~~lgd~l~~s~~VG~Thw~~~ 238 (314)
T pfam11017 212 LLGALHEHLGDNLVYSCRVGATHWDKV 238 (314)
T ss_pred HHHHHHHHHHHHHHEEEEECCCCCCCC
T ss_conf 999999998764550788702353456
No 494
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=61.60 E-value=12 Score=17.61 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=13.5
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCEEEE
Q ss_conf 355047631010247888764323721576
Q gi|254780279|r 71 SVDGIIDFSSPALTLQSLNISAQHNIVHII 100 (280)
Q Consensus 71 ~~DViIDFT~P~~~~~~~~~a~~~g~~vVi 100 (280)
++|||---+.+....-..-.+...++|+|+
T Consensus 79 ~~DiIH~H~~~~~~~~~~~~~~~~~ip~v~ 108 (355)
T cd03799 79 GIDHIHAHFGTTPATVAMLASRLGGIPYSF 108 (355)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 998999768833799999999974999999
No 495
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=61.34 E-value=11 Score=17.86 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=43.6
Q ss_pred EEEEC--C-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCH----HHHHCCCCEEEEEEC
Q ss_conf 99989--9-8779999999983899789999964898020455366608754675455685----785213550476310
Q gi|254780279|r 8 ISVLG--G-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL----AMAIQSVDGIIDFSS 80 (280)
Q Consensus 8 V~I~G--a-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl----~~~~~~~DViIDFT~ 80 (280)
|.|+| | ||.--++ .+++.-+.+++.+-... -+.+.|+|.-- +...++ ...++-+|+.=.||.
T Consensus 6 i~I~GPTAsGKT~lai--~LAk~~~~eIIs~DSmQ--vYr~mdIGTAK-------ps~~e~~~vpHhliDi~~p~e~ysa 74 (308)
T COG0324 6 IVIAGPTASGKTALAI--ALAKRLGGEIISLDSMQ--VYRGLDIGTAK-------PSLEELAGVPHHLIDIRDPTESYSA 74 (308)
T ss_pred EEEECCCCCCHHHHHH--HHHHHCCCCEEECCHHH--HCCCCCCCCCC-------CCHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 9998988757789999--99998299289302355--31888630799-------9999985899787545683225549
Q ss_pred CCHHHH---HHHHH-HHCCCEEEEEECCCCH
Q ss_conf 102478---88764-3237215765022231
Q gi|254780279|r 81 PALTLQ---SLNIS-AQHNIVHIIGTTGFSV 107 (280)
Q Consensus 81 P~~~~~---~~~~a-~~~g~~vViGTTG~~~ 107 (280)
.+.... .++.. .+.+.|+++|=|||.-
T Consensus 75 ~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~ 105 (308)
T COG0324 75 AEFQRDALAAIDDILARGKLPILVGGTGLYL 105 (308)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCHHHHH
T ss_conf 9999999999999996899879976679999
No 496
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=61.34 E-value=13 Score=17.58 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=31.1
Q ss_pred HHHHH-CCCCEEEEEE-CCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 57852-1355047631-010247888764323721576502223
Q gi|254780279|r 65 LAMAI-QSVDGIIDFS-SPALTLQSLNISAQHNIVHIIGTTGFS 106 (280)
Q Consensus 65 l~~~~-~~~DViIDFT-~P~~~~~~~~~a~~~g~~vViGTTG~~ 106 (280)
++.++ +.+|+||=.. .+++....++.|.+.|+|+|.--++++
T Consensus 53 ie~lI~qgvDaIiv~p~d~~a~~~~v~~a~~aGIpVV~~D~~~~ 96 (274)
T cd06311 53 QDLLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVVVDRGLS 96 (274)
T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999749999999579778889999999986997999788889
No 497
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=61.13 E-value=7.7 Score=19.04 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHCCCCEEEEE-------ECCCHHHHHHHHHHHCCCEEEEEECCCCHHHH-----HHHHHHHC
Q ss_conf 754556857852135504763-------10102478887643237215765022231358-----99987403
Q gi|254780279|r 58 GIKFSDNLAMAIQSVDGIIDF-------SSPALTLQSLNISAQHNIVHIIGTTGFSVKEN-----EVISSFAR 118 (280)
Q Consensus 58 ~v~i~~dl~~~~~~~DViIDF-------T~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~-----~~l~~~s~ 118 (280)
.+.+-..++.++++.++-||. |+-.....|-..+.++++|+|| +||.+.++ -.|++...
T Consensus 182 H~~~pPa~~aLl~~p~~~~dAfl~PGHVSti~G~~~Y~~i~~~y~~P~Vv--aGFEP~DiL~av~mll~Q~~~ 252 (384)
T TIGR00075 182 HRLVPPALEALLENPEVQIDAFLAPGHVSTIIGVKPYEPIAEKYKIPIVV--AGFEPVDILQAVYMLLKQLIS 252 (384)
T ss_pred CCCHHHHHHHHHCCCCHHHHHEECCCCEEEEECHHHHHHHHHHCCCCEEE--ECCCHHHHHHHHHHHHHHHHC
T ss_conf 12211488888638840121101389636851524348899856898799--688867999999999999852
No 498
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=60.78 E-value=13 Score=17.52 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=45.7
Q ss_pred EEEEEEC-CCHHHHHHHHHHH-HCCCCEEEEEEECCCCHHHCC--CHHHHCCCCC-----CCCCCCCCHHHHHC--CCCE
Q ss_conf 3799989-9877999999998-389978999996489802045--5366608754-----67545568578521--3550
Q gi|254780279|r 6 MRISVLG-GGRMGQALIKEIH-NNPSITLHSIIVRSGSPLIGQ--DVGNFVGISP-----MGIKFSDNLAMAIQ--SVDG 74 (280)
Q Consensus 6 IkV~I~G-aGkMG~~ii~~i~-~~~~~eLv~~i~~~~~~~~g~--d~~~~~~~~~-----~~v~i~~dl~~~~~--~~DV 74 (280)
|++.|.| ||=.|...++.+. +.++.+++. +|+ =.+.|. .+..+.+.+. .++.-...+..+++ .+|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~-~Dk--LTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVN-LDK--LTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEE-EEC--CCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf 9379965751577899999996099752899-752--3315778788864069971588545547999999997448875
Q ss_pred EEEEEC----------CC--------HHHHHHHHHHHCCC
Q ss_conf 476310----------10--------24788876432372
Q gi|254780279|r 75 IIDFSS----------PA--------LTLQSLNISAQHNI 96 (280)
Q Consensus 75 iIDFT~----------P~--------~~~~~~~~a~~~g~ 96 (280)
|+-|.. |+ .+...++.++++..
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~ 117 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWG 117 (340)
T ss_pred EEEECHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9981100133223357055340002879999999998466
No 499
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex.
Probab=60.63 E-value=6.8 Score=19.42 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCCEEE-------------EEECCCHHHHHHHHHHHCCCEEEEE--ECCCCHHHHHH
Q ss_conf 1355047-------------6310102478887643237215765--02223135899
Q gi|254780279|r 70 QSVDGII-------------DFSSPALTLQSLNISAQHNIVHIIG--TTGFSVKENEV 112 (280)
Q Consensus 70 ~~~DViI-------------DFT~P~~~~~~~~~a~~~g~~vViG--TTG~~~e~~~~ 112 (280)
++.|.|| ||=.-+++..+...+.+.++|+..| ||+-.+..++.
T Consensus 64 kP~DAVi~LG~VIrG~T~HfeyV~~~A~~gia~~a~~~~~PV~fGilTt~~~eqA~~r 121 (148)
T TIGR00114 64 KPYDAVIALGAVIRGGTPHFEYVADEAAKGIADLALDYDVPVIFGILTTETIEQAIER 121 (148)
T ss_pred CCCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
T ss_conf 9633588511477379665577777899999999986598776033288679999996
No 500
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=60.53 E-value=13 Score=17.49 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEEECC----CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCH
Q ss_conf 999899----8779999999983899789999964898020455366608754675455685785213550476310102
Q gi|254780279|r 8 ISVLGG----GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPAL 83 (280)
Q Consensus 8 V~I~Ga----GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~ 83 (280)
|+++|+ |+.|+.+.+.+.+..+=.+..+--... .-.|++.+.+..++-...|+.|=.+.+..
T Consensus 13 vavigas~~~~~vg~~i~~nL~~~g~g~i~PVnp~~~--------------~v~G~~ay~s~~~lp~~~dlav~~v~~~~ 78 (598)
T COG1042 13 IAVIGASERPGKLGYEILRNLLEYGQGKIYPVNPKYD--------------EVLGVKAYTSVADLPDAPDLAVIVVPAKV 78 (598)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC--------------CCCCCCCCCHHHHCCCCCCCEEEEECHHH
T ss_conf 7887146875215799999998568885574276532--------------33663146407557888770689852445
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCC--------CCCEECCC
Q ss_conf 478887643237215765022231358999874035--------55210000
Q gi|254780279|r 84 TLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARN--------APIVKSSN 127 (280)
Q Consensus 84 ~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~--------~~il~apN 127 (280)
+.+.++.|-+.|+..++.-|..-.+--++..+.-+. --.+..||
T Consensus 79 ~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rligPn 130 (598)
T COG1042 79 VPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPN 130 (598)
T ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf 6899987200587358996245678877676778899999885596386233
Done!