HHsearch alignment for GI: 254780279 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=99.97 E-value=5.2e-30 Score=225.61 Aligned_cols=121 Identities=36% Similarity=0.666 Sum_probs=115.5
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf 37999899-87799999999838997899999648980204553666087546754556857852135504763101024
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT 84 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~ 84 (280)
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~DVvIDFS~p~~~ 78 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL--GVPVTDDLEEVLADADVLIDFTTPEAT 78 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCC--CCEECCCHHHHCCCCCEEEEECCHHHH
T ss_conf 989998898878999999998589968999994389612254310014678--711124477751578889990687899
Q ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCH
Q ss_conf 78887643237215765022231358999874035552100001
Q gi|254780279|r 85 LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNM 128 (280)
Q Consensus 85 ~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~ 128 (280)
T Consensus 79 ~~~~~~~~~~~~~~ViGTTG~s~~~~~~i~~~a~~ipi~~apNF 122 (122)
T pfam01113 79 LENLELALKHGKPLVIGTTGFTEEQLAELKEAAKKIPIVIAPNF 122 (122)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99999999679988998999999999999998445988982799