RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase
[Candidatus Liberibacter asiaticus str. psy62]
(280 letters)
>gnl|CDD|178822 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.
Length = 257
Score = 302 bits (775), Expect = 9e-83
Identities = 112/268 (41%), Positives = 160/268 (59%), Gaps = 12/268 (4%)
Query: 5 PMRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD 63
++++V G GRMG+ LI+ + + L + + R GSPL+GQ +G+ +D
Sbjct: 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQG--------ALGVAITD 52
Query: 64 NLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIV 123
+L + D +IDF++P TL++L + +H +IGTTGF+ ++ + A+ P+V
Sbjct: 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVV 112
Query: 124 KSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGR 183
+ N S+G+N L L E AA+YL D+D EI+E HHR K+D+PSGTAL L EAIA R
Sbjct: 113 IAPNFSIGVNLLMKLAEKAAKYL---GDYDIEIIEAHHRHKVDAPSGTALKLAEAIAEAR 169
Query: 184 KVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRI 243
+L + V R AR +G IGI S+R G IVGEH V+ AG+GE I + H A R
Sbjct: 170 GRDLKEVAVYGREGATGARVKGEIGIHSVRGGDIVGEHEVIFAGDGERIEIRHDATSRMS 229
Query: 244 FARGSLTAALWAKSQIPGLYSMRDVLGI 271
FA G+L AA W + PGLY M DVLG+
Sbjct: 230 FAPGALLAARWLVGKKPGLYGMEDVLGL 257
>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase.
Length = 266
Score = 231 bits (592), Expect = 1e-61
Identities = 101/268 (37%), Positives = 149/268 (55%), Gaps = 6/268 (2%)
Query: 6 MRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN 64
++++V G GRMG+ LIK + L + R GS L G D G GI +G+ +D+
Sbjct: 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDD 61
Query: 65 LAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFA--RNAPI 122
L D +IDF++P L L + +H + ++GTTGFS ++ + ++ A
Sbjct: 62 LEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAA 121
Query: 123 VKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANG 182
V + N S+G+N + L+E AA+YL D+D EI+E+HHR K D+PSGTAL E IA
Sbjct: 122 VIAPNFSIGVNLMFKLLEKAAKYL---GDYDIEIIELHHRHKKDAPSGTALKTAEMIAEA 178
Query: 183 RKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRR 242
R L + V R R IGI ++R G +VGEH+V+ AG+GE + ++H A R
Sbjct: 179 RGERLKNVAVTEREGLTGERGREEIGIHAVRGGDVVGEHTVMFAGDGERLEITHRASSRA 238
Query: 243 IFARGSLTAALWAKSQIPGLYSMRDVLG 270
FA G++ AA W + G+Y M DVL
Sbjct: 239 CFANGAVRAARWLADKEAGVYDMEDVLD 266
>gnl|CDD|131185 TIGR02130, dapB_plant, dihydrodipicolinate reductase. This narrow
family includes genes from Arabidopsis and Fibrobacter
succinogenes (which probably recieved the gene from a
plant via lateral gene transfer). The sequences are
distantly related to the dihydrodipicolinate reductases
from archaea. In Fibrobacter this gene is the only
candidate DHPR in the genome.
Length = 275
Score = 34.2 bits (78), Expect = 0.043
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 22/210 (10%)
Query: 75 IIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA--PIVKSSNMSLGI 132
ID++ P+ + +H I ++GTTG + E ++ +A P V + NM+ I
Sbjct: 73 CIDYTHPSAVNDNAAFYGKHGIPFVMGTTG---GDREALAKLVADAKHPAVIAPNMAKQI 129
Query: 133 NFLGFLVETAAEYLLPA-KDWDFEILEMHHRRKLDSPSGTA-LLLGEAIANGRKVNLTDH 190
+E AE A + E++E H K D+ SGTA ++G G ++ D
Sbjct: 130 VAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDI 188
Query: 191 MVLNRHIQQCART---EGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFARG 247
+ +Q R E +G G + + A H+ R+I+A G
Sbjct: 189 EKIRDEKEQIERMGVPEEHLG------GHAFHLYHLDSADGTVHFEFQHNVCGRKIYAEG 242
Query: 248 SLTAALWAKSQIPG-----LYSMRDVLGIG 272
++ A L+ +I +++M DVL G
Sbjct: 243 TVDAVLFLADKIIAAAEAKIFNMIDVLREG 272
>gnl|CDD|178374 PLN02775, PLN02775, Probable dihydrodipicolinate reductase.
Length = 286
Score = 31.9 bits (73), Expect = 0.20
Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 48/220 (21%)
Query: 75 IIDFSSPALTLQSLNISAQHNIVHIIGTTG-------FSVKENEVISSFARNAPIVKSSN 127
++D++ P + + ++ + ++GTTG V+E+ V + V +
Sbjct: 84 VVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYA--------VIAPQ 135
Query: 128 MSLGINFLGFLVETAAEYLLPA-KDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVN 186
M + +E AE A + E++E H KLD+ SGTA I++ RK+
Sbjct: 136 MGKQVVAFQAAMEIMAEQFPGAFSGYTLEVVESHQATKLDT-SGTA---KAVISSFRKLG 191
Query: 187 LT---DHMVLNRHIQQCARTEGSIGIASLRAGSIVGEH---------SVVIAGEGESITL 234
++ D + L R +Q L + EH + S
Sbjct: 192 VSFDMDQIELIRDPKQ-----------QLEGVGVPEEHLNGHAFHTYRLTSPDGTVSFEF 240
Query: 235 SHSAYDRRIFARGSLTAALWAKSQI-----PGLYSMRDVL 269
H+ R I+A G++ A L+ +I +Y+M DVL
Sbjct: 241 QHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVL 280
>gnl|CDD|183357 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.
Length = 267
Score = 31.3 bits (72), Expect = 0.32
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 6 MRISVLGGGRMGQALIK 22
+I +GGG M A+I
Sbjct: 3 KKIGFIGGGNMASAIIG 19
>gnl|CDD|183960 PRK13303, PRK13303, L-aspartate dehydrogenase; Provisional.
Length = 265
Score = 30.3 bits (69), Expect = 0.56
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS 41
M+++++G G +G A+++ + ++P + + +IV S
Sbjct: 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS 37
>gnl|CDD|162008 TIGR00715, precor6x_red, precorrin-6x reductase. This enzyme was
found to be a monomer by gel filtration.
Length = 256
Score = 29.0 bits (65), Expect = 1.3
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL 65
M + ++GG +A+ K + L ++ G L V + L
Sbjct: 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALD---PQEL 57
Query: 66 A--MAIQSVDGIIDFSSP 81
+ S+D ++D + P
Sbjct: 58 REFLKRHSIDILVDATHP 75
>gnl|CDD|139906 PRK13846, PRK13846, putative glycerol-3-phosphate acyltransferase
PlsX; Provisional.
Length = 316
Score = 27.9 bits (62), Expect = 3.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 78 FSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFL 135
F+S + Q L+ S II F E+ +++ + KSS+M+LG+++L
Sbjct: 41 FASSEVHHQILSNSPLSRSPRIITAEDFVSMEDSPLAAIRK-----KSSSMALGLDYL 93
>gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 618
Score = 27.5 bits (61), Expect = 4.6
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 19 ALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMG 58
L K + + IV + Q+ N G SPMG
Sbjct: 1 MLQKNTRGEELMRVFETIVHGNEQDLMQENANVDGRSPMG 40
>gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional.
Length = 720
Score = 27.2 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 1 MHQSPMRISVLGGGRMGQALIKEI 24
MH P RI V G GR+ L +E
Sbjct: 626 MHGKPSRIRVRGPGRLFSGLPEEF 649
>gnl|CDD|184162 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 526
Score = 26.6 bits (60), Expect = 7.1
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 181 NGRKVNL--TDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAG 227
+G +V+ HM++ R+ + G IG + G+++GE + IAG
Sbjct: 442 DGYRVDAKPEGHMLIIRNRDR----PGVIG----KVGTLLGEAGINIAG 482
>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed.
Length = 908
Score = 26.5 bits (58), Expect = 7.3
Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 32 LHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT------- 84
L +++V + P++ +D+ + V ++ + I+ + + P L
Sbjct: 407 LDTVVVPTNRPMVRKDMADLVYLTA-----DEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461
Query: 85 ---LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMS 129
L L + I H + F +E E+++ R + ++NM+
Sbjct: 462 SELLARL--MVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMA 507
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 26.7 bits (59), Expect = 7.4
Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 41/157 (26%)
Query: 112 VISSFARNAPIVKS----SNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDS 167
VI S AR P+ KS NM+ G G +V+ A E R KLD
Sbjct: 5 VIVSTART-PLAKSWRGAFNMTHGATLGGHVVQHAVE-----------------RAKLDP 46
Query: 168 PSGTALLLGEAIANG-------RKVNL-------TDHMVLNRHIQQCARTEGSIGIASLR 213
+++G A G R++ L M +NR C+ +I +A+ R
Sbjct: 47 AEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRF---CSSGLQTIALAAQR 103
Query: 214 AGSIVGEHSVVIAGEGESITLSHSAYDRRIFARGSLT 250
I GE V +AG ESI+ + +R + G L
Sbjct: 104 V--IAGEGDVFVAGGVESISCVQNEMNRHMLREGWLV 138
>gnl|CDD|184770 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 308
Score = 26.5 bits (59), Expect = 7.5
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%)
Query: 3 QSPMRISVLGGGRMGQALIK-EIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF 61
P I++LG G G L N + + S R + + +
Sbjct: 2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWS---RRSGLSLAAVLAD----------- 47
Query: 62 SDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIV 97
+D + A+ S+ G+ A +Q+LN+ + IV
Sbjct: 48 ADVIVSAV-SMKGV---RPVAEQVQALNLPPETIIV 79
>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid
decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
formyltransferase; Validated.
Length = 660
Score = 26.5 bits (59), Expect = 8.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 214 AGSIVGEHSVVIAGEGESITLSH 236
AG+IV + V IA + ++TL H
Sbjct: 141 AGAIVAQQRVAIAPDDTALTLHH 163
>gnl|CDD|178675 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.
Length = 581
Score = 26.0 bits (58), Expect = 9.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 188 TDHMVLNRHIQQCARTEGSIGIASLRA-GSIVGEHSVVIAGEGE 230
T H+ N IQ A + +A+LRA G + + ++ AG GE
Sbjct: 288 TTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGE 331
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,541,252
Number of extensions: 292684
Number of successful extensions: 598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 31
Length of query: 280
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,006,537
Effective search space: 753228956
Effective search space used: 753228956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)