HHsearch alignment for GI: 254780280 and conserved domain: PRK00109
>PRK00109 Holliday junction resolvase-like protein; Reviewed.
Probab=96.32 E-value=0.024 Score=32.59 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=55.7
Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCC
Q ss_conf 66773799985751189999877998088999743887358899999999722345655469997304416855642135
Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNY 89 (348)
Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~ 89 (348)
T Consensus 1 ~~~griLgiD~G~kriGlAisD~~~~~a~Pl~~i~~~~~~~~~~~l~~ii~e---~~i~~iViGlP~~~-~g~~~~~~~~ 76 (141)
T PRK00109 1 MMSGRILGFDVGTKRIGVAIGDPLGGTARPLETIKAQNGEPDWDALEKLLKE---WQPDLLVVGLPLNM-DGTEGPMTER 76 (141)
T ss_pred CCCCCEEEEEECCCEEEEEEECCCCCEEECCEEEECCCCHHHHHHHHHHHHH---HCCCEEEEECCCCC-CCCCCHHHHH
T ss_conf 9988889998189979999946999847441437727706899999999998---39998999447999-9884488999
Q ss_pred CCCCCHHHHHHHHCCCCEEEECH
Q ss_conf 66669889999828985588212
Q gi|254780280|r 90 HWVIDPEELISRMQFEDVLLIND 112 (348)
Q Consensus 90 ~~~~~~~~l~~~~~~~~v~i~ND 112 (348)
T Consensus 77 v-~~F~~~L~~~~~-l~v~~~DE 97 (141)
T PRK00109 77 A-RKFANRLEGRFG-LPVELVDE 97 (141)
T ss_pred H-HHHHHHHHHHHC-CCEEEEEC
T ss_conf 9-999999999729-98798624