HHsearch alignment for GI: 254780280 and conserved domain: TIGR03281
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=90.03 E-value=0.95 Score=22.73 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=56.7
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCC
Q ss_conf 36895799999999999999999999974899738996567765567727648999988379837889738879995787
Q gi|254780280|r 238 KSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPY 317 (348)
Q Consensus 238 ~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~ 317 (348)
T Consensus 232 ~~~~e~~~la~dtl~m~vaMEiasl~~L~~~~~~v~lags~Gs~~~p----~~~~~------~i~~~l~~-~~-~vl~~~ 299 (326)
T TIGR03281 232 YNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREP----INFSG------KIKRVLSC-KV-LVLDSE 299 (326)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCCCC----HHHHH------HHHHHHCC-CC-EEECHH
T ss_conf 33785056778899999999997531442798877986113234781----66899------99998579-80-873666
Q ss_pred CHHHHHHHHHHCC
Q ss_conf 2277599987380
Q gi|254780280|r 318 IAIAGMVSYIKMT 330 (348)
Q Consensus 318 agl~GAa~~~r~~ 330 (348)
T Consensus 300 saAiG~A~IArDI 312 (326)
T TIGR03281 300 SAAIGLALIAEDI 312 (326)
T ss_pred HHHHHHHHHHHHH
T ss_conf 7765689999998