HHsearch alignment for GI: 254780280 and conserved domain: smart00732
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.21 E-value=0.022 Score=32.77 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=54.5
Q ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCCCCC
Q ss_conf 37999857511899998779980889997438873588999999997223456554699973044168556421356666
Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHWVI 93 (348)
Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~~~~ 93 (348)
T Consensus 2 rvLgiD~G~kriG~Ai~D~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~---~~~~~iviG~P~~~~-g~~~~~~~---~~ 74 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKK---YQPDLIVIGLPLNMN-GTASRETE---EA 74 (99)
T ss_pred CEEEEEECCCCEEEEEEECCCCEECCCEEEECCCCHHHHHHHHHHHHH---HCCCEEEECCCCCCC-CCCCHHHH---HH
T ss_conf 799992178969999998999732131899859826999999999998---499889974752489-98199999---99
Q ss_pred CHHHHHHHHCCCCEEEECH
Q ss_conf 9889999828985588212
Q gi|254780280|r 94 DPEELISRMQFEDVLLIND 112 (348)
Q Consensus 94 ~~~~l~~~~~~~~v~i~ND 112 (348)
T Consensus 75 f~~~l~~-~~~i~v~~~DE 92 (99)
T smart00732 75 FAELLKE-RFNLPVVLVDE 92 (99)
T ss_pred HHHHHHH-CCCCCEEEEEC
T ss_conf 9999851-78998899958