HHsearch alignment for GI: 254780280 and conserved domain: smart00732

>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.21  E-value=0.022  Score=32.77  Aligned_cols=91  Identities=13%  Similarity=0.097  Sum_probs=54.5

Q ss_pred             CEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCCCCC
Q ss_conf             37999857511899998779980889997438873588999999997223456554699973044168556421356666
Q gi|254780280|r   14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHWVI   93 (348)
Q Consensus        14 ~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~~~~   93 (348)
T Consensus         2 rvLgiD~G~kriG~Ai~D~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~---~~~~~iviG~P~~~~-g~~~~~~~---~~   74 (99)
T smart00732        2 RVLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKK---YQPDLIVIGLPLNMN-GTASRETE---EA   74 (99)
T ss_pred             CEEEEEECCCCEEEEEEECCCCEECCCEEEECCCCHHHHHHHHHHHHH---HCCCEEEECCCCCCC-CCCCHHHH---HH
T ss_conf             799992178969999998999732131899859826999999999998---499889974752489-98199999---99


Q ss_pred             CHHHHHHHHCCCCEEEECH
Q ss_conf             9889999828985588212
Q gi|254780280|r   94 DPEELISRMQFEDVLLIND  112 (348)
Q Consensus        94 ~~~~l~~~~~~~~v~i~ND  112 (348)
T Consensus        75 f~~~l~~-~~~i~v~~~DE   92 (99)
T smart00732       75 FAELLKE-RFNLPVVLVDE   92 (99)
T ss_pred             HHHHHHH-CCCCCEEEEEC
T ss_conf             9999851-78998899958