HHsearch results for GI: 254780280 and protein with PDBid: 1z05_A
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=100.00 E-value=7.2e-39 Score=256.83 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=212.2
Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCC--C----CHHHHHHHHHHHCC--CCCCCEEEEEEEEEEECC
Q ss_conf 667737999857511899998779980889997438873--5----88999999997223--456554699973044168
Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDY--E----NLEHAIQEVIYRKI--SIRLRSAFLAIATPIGDQ 81 (348)
Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~--~----~~~~~i~~~l~~~~--~~~~~~igi~v~Gpv~~~ 81 (348)
|-...+|++|||+|+++++++|.. +++..+.+.++... + .+.+.+++++.+.. ..++.+|||++||+|+..
T Consensus 105 ~~~~~~iGIdig~~~i~~~l~dl~-G~il~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~gIgi~~pG~vd~~ 183 (429)
T 1z05_A 105 NLGWQFLSMRLGRGYLTIALHELG-GEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSE 183 (429)
T ss_dssp CTTEEEEEEEEETTEEEEEEEETT-SCEEEEEEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETT
T ss_pred CCEEEEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC
T ss_conf 880499999989998999998499-8789999834887887899999999999999975766146579999627861688
Q ss_pred C--EEEECCCCCC-CCH-HHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf 5--5642135666-698-89999828985588212654320000158655353024345576667527993176202245
Q gi|254780280|r 82 K--SFTLTNYHWV-IDP-EELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGIS 157 (348)
Q Consensus 82 ~--~~~~~~~~~~-~~~-~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~ 157 (348)
. ....+++.|. ++. ..+.+.++ .||.++||++|.+++|.+++. ......++++..|+|+|.+
T Consensus 184 ~g~~~~~~~~~~~~~~l~~~l~~~~~-~pV~v~NDa~a~alaE~~~g~-------------~~~~~~~v~i~~g~GiG~g 249 (429)
T 1z05_A 184 QGIVLQMPHYNVKNLALGPEIYKATG-LPVFVANDTRAWALAEKLFGH-------------SQDVDNSVLISIHHGLGAG 249 (429)
T ss_dssp TTEEEECSSSBCSSBCHHHHHHHHHC-SCEEEEEHHHHHHHHHHHHST-------------TTTCSSEEEEEESSSEEEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHC-CCEEEECCCCCCCHHHHHCCC-------------CCCCCCCEEEEECCCCCCC
T ss_conf 87462489888589845899999979-988994464521448776186-------------6688864157744787444
Q ss_pred EEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCC---CCCCCH
Q ss_conf 431058--863011356786666766102347899998531898648775222238999999987408886---436988
Q gi|254780280|r 158 SVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFES---NKVLSS 232 (348)
Q Consensus 158 ~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~---~~~~~~ 232 (348)
+++++. .|.+..++|+||+.+.+.+. .|.||+.+|+|+++|+++|.+.++.......... .+.+..
T Consensus 250 ii~~G~l~~G~~~~aGeiGh~~v~~~g~---------~c~cG~~gclE~~~S~~al~~~~~~~~~~~~~~~l~~~~~~~~ 320 (429)
T 1z05_A 250 IVLDGRVLQGRHGNIGELGHIQIDPQGK---------RCHCGNYGCLETVASSQAIRDQVTARIQAGEPSCLATVEEISI 320 (429)
T ss_dssp EEETTEECCTTTTCTTBCTTSBCCTTCC---------BCTTSCBSBTHHHHSHHHHHHHHHHHHHTTCCCTTTTCSSCCH
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCC---------CCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 3579811006887552555478679997---------5768887860104049999999998761366432245333899
Q ss_pred HH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCE
Q ss_conf 89--9883689579999999999999999999997489973899656776556772764899998837983788973887
Q gi|254780280|r 233 KD--IVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPT 310 (348)
Q Consensus 233 ~~--~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv 310 (348)
.+ .+++.+|+.|.+++++++++||.+++|++++++|+. |||||+++.....++ +.+++.+.++ .+..+.++++|
T Consensus 321 ~~i~~~a~~gD~~a~~ii~~~~~~La~~i~nl~~~ldPe~-IVlgG~v~~~~~~l~--~~i~~~i~~~-~~~~~~~~~~I 396 (429)
T 1z05_A 321 EDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINLFNPEK-ILIGGVINQAKSILY--PSIEQCIREQ-SLPVYHQDLKL 396 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSE-EEEESGGGGGHHHHH--HHHHHHHHHH-SCHHHHTTCEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECHHHHCHHHHH--HHHHHHHHHH-CCCCCCCCCEE
T ss_conf 9999999839899999999999999999999999879898-999692574768899--9999999985-03125789889
Q ss_pred EEE-ECCCCHHHHHHHHHH
Q ss_conf 999-578722775999873
Q gi|254780280|r 311 YVI-TNPYIAIAGMVSYIK 328 (348)
Q Consensus 311 ~~~-~~~~agl~GAa~~~r 328 (348)
..+ .+++++++|||.+++
T Consensus 397 ~~s~l~~~a~l~GAAlla~ 415 (429)
T 1z05_A 397 VESRFYKQATMPGAALIKQ 415 (429)
T ss_dssp EECSCSSCTTHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHH
T ss_conf 9899798199999999999