HHsearch results for GI: 254780280 and protein with PDBid: 1z05_A

>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=100.00  E-value=7.2e-39  Score=256.83  Aligned_cols=291  Identities=16%  Similarity=0.181  Sum_probs=212.2

Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCC--C----CHHHHHHHHHHHCC--CCCCCEEEEEEEEEEECC
Q ss_conf             667737999857511899998779980889997438873--5----88999999997223--456554699973044168
Q gi|254780280|r   10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDY--E----NLEHAIQEVIYRKI--SIRLRSAFLAIATPIGDQ   81 (348)
Q Consensus        10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~--~----~~~~~i~~~l~~~~--~~~~~~igi~v~Gpv~~~   81 (348)
                      |-...+|++|||+|+++++++|.. +++..+.+.++...  +    .+.+.+++++.+..  ..++.+|||++||+|+..
T Consensus       105 ~~~~~~iGIdig~~~i~~~l~dl~-G~il~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~gIgi~~pG~vd~~  183 (429)
T 1z05_A          105 NLGWQFLSMRLGRGYLTIALHELG-GEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSE  183 (429)
T ss_dssp             CTTEEEEEEEEETTEEEEEEEETT-SCEEEEEEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETT
T ss_pred             CCEEEEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC
T ss_conf             880499999989998999998499-8789999834887887899999999999999975766146579999627861688


Q ss_pred             C--EEEECCCCCC-CCH-HHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf             5--5642135666-698-89999828985588212654320000158655353024345576667527993176202245
Q gi|254780280|r   82 K--SFTLTNYHWV-IDP-EELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGIS  157 (348)
Q Consensus        82 ~--~~~~~~~~~~-~~~-~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~  157 (348)
                      .  ....+++.|. ++. ..+.+.++ .||.++||++|.+++|.+++.             ......++++..|+|+|.+
T Consensus       184 ~g~~~~~~~~~~~~~~l~~~l~~~~~-~pV~v~NDa~a~alaE~~~g~-------------~~~~~~~v~i~~g~GiG~g  249 (429)
T 1z05_A          184 QGIVLQMPHYNVKNLALGPEIYKATG-LPVFVANDTRAWALAEKLFGH-------------SQDVDNSVLISIHHGLGAG  249 (429)
T ss_dssp             TTEEEECSSSBCSSBCHHHHHHHHHC-SCEEEEEHHHHHHHHHHHHST-------------TTTCSSEEEEEESSSEEEE
T ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHC-CCEEEECCCCCCCHHHHHCCC-------------CCCCCCCEEEEECCCCCCC
T ss_conf             87462489888589845899999979-988994464521448776186-------------6688864157744787444


Q ss_pred             EEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCC---CCCCCH
Q ss_conf             431058--863011356786666766102347899998531898648775222238999999987408886---436988
Q gi|254780280|r  158 SVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFES---NKVLSS  232 (348)
Q Consensus       158 ~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~---~~~~~~  232 (348)
                      +++++.  .|.+..++|+||+.+.+.+.         .|.||+.+|+|+++|+++|.+.++..........   .+.+..
T Consensus       250 ii~~G~l~~G~~~~aGeiGh~~v~~~g~---------~c~cG~~gclE~~~S~~al~~~~~~~~~~~~~~~l~~~~~~~~  320 (429)
T 1z05_A          250 IVLDGRVLQGRHGNIGELGHIQIDPQGK---------RCHCGNYGCLETVASSQAIRDQVTARIQAGEPSCLATVEEISI  320 (429)
T ss_dssp             EEETTEECCTTTTCTTBCTTSBCCTTCC---------BCTTSCBSBTHHHHSHHHHHHHHHHHHHTTCCCTTTTCSSCCH
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCC---------CCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf             3579811006887552555478679997---------5768887860104049999999998761366432245333899


Q ss_pred             HH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCE
Q ss_conf             89--9883689579999999999999999999997489973899656776556772764899998837983788973887
Q gi|254780280|r  233 KD--IVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPT  310 (348)
Q Consensus       233 ~~--~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv  310 (348)
                      .+  .+++.+|+.|.+++++++++||.+++|++++++|+. |||||+++.....++  +.+++.+.++ .+..+.++++|
T Consensus       321 ~~i~~~a~~gD~~a~~ii~~~~~~La~~i~nl~~~ldPe~-IVlgG~v~~~~~~l~--~~i~~~i~~~-~~~~~~~~~~I  396 (429)
T 1z05_A          321 EDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINLFNPEK-ILIGGVINQAKSILY--PSIEQCIREQ-SLPVYHQDLKL  396 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSE-EEEESGGGGGHHHHH--HHHHHHHHHH-SCHHHHTTCEE
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECHHHHCHHHHH--HHHHHHHHHH-CCCCCCCCCEE
T ss_conf             9999999839899999999999999999999999879898-999692574768899--9999999985-03125789889


Q ss_pred             EEE-ECCCCHHHHHHHHHH
Q ss_conf             999-578722775999873
Q gi|254780280|r  311 YVI-TNPYIAIAGMVSYIK  328 (348)
Q Consensus       311 ~~~-~~~~agl~GAa~~~r  328 (348)
                      ..+ .+++++++|||.+++
T Consensus       397 ~~s~l~~~a~l~GAAlla~  415 (429)
T 1z05_A          397 VESRFYKQATMPGAALIKQ  415 (429)
T ss_dssp             EECSCSSCTTHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHH
T ss_conf             9899798199999999999