HHsearch results for GI: 254780280 and protein with PDBid: 3htv_A

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=100.00  E-value=3e-36  Score=240.62  Aligned_cols=278  Identities=17%  Similarity=0.179  Sum_probs=187.6

Q ss_pred             CCCEEEEEECCCCEEEEEEECCCCEEEEEEEECC--CCCCCHHHHHHHHHHHC---CCCCCCEEEEEEEEEEECCC--EE
Q ss_conf             7737999857511899998779980889997438--87358899999999722---34565546999730441685--56
Q gi|254780280|r   12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQT--SDYENLEHAIQEVIYRK---ISIRLRSAFLAIATPIGDQK--SF   84 (348)
Q Consensus        12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t--~~~~~~~~~i~~~l~~~---~~~~~~~igi~v~Gpv~~~~--~~   84 (348)
                      .-.|++||||||++|++++|.. +++....+.++  .+++++.+.+.+.+.+.   ...++.++|||+||+|+...  ..
T Consensus         6 ~~~v~GIDiGgt~i~~~l~d~~-g~i~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gIgia~pG~vd~~~g~v~   84 (310)
T 3htv_A            6 HNVVAGVDMGATHIRFCLRTAE-GETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTII   84 (310)
T ss_dssp             EEEEEEEEECSSEEEEEEEETT-SCEEEEEEEEHHHHHTTCHHHHHHHHHHHHHHHHTEEEEEEEEEESSCBCTTSSCBC
T ss_pred             CCEEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCEEE
T ss_conf             9899999976667999999299-989999996188878899999999999999987599730799982630867998499


Q ss_pred             EECCCCC---C-CCH-HHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEE
Q ss_conf             4213566---6-698-8999982898558821265432000015865535302434557666752799317620224543
Q gi|254780280|r   85 TLTNYHW---V-IDP-EELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSV  159 (348)
Q Consensus        85 ~~~~~~~---~-~~~-~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~  159 (348)
                      ..++.+|   . ++. ..+.+.++ .||.++||++|.++++.+.              .......++++..|||+|.+++
T Consensus        85 ~~~~~~~~~~~~~~l~~~l~~~~~-~pv~i~ND~~aaa~~e~~~--------------~~~~~~~~~~i~~gtGiG~gii  149 (310)
T 3htv_A           85 STPNLPLTAADLYDLADKLENTLN-CPVEFSRDVNLQLSWDVVE--------------NRLTQQLVLAAYLGTGMGFAVW  149 (310)
T ss_dssp             SCCSSSCCHHHHTTHHHHHHHHHT-SCEEEEEHHHHHHHHHHHH--------------TTCTTSCEEEEEESSSEEEEEE
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHC-CCEEEECCHHHHHHHHHHH--------------CCCCCCEEEEEEECCCCCCCCC
T ss_conf             568778644447767999878629-8579955377777766540--------------3454665999984671355413


Q ss_pred             ECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH-
Q ss_conf             1058--8630113567866667661023478999985318986487752222389999999874088864369888998-
Q gi|254780280|r  160 IRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIV-  236 (348)
Q Consensus       160 ~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~-  236 (348)
                      .++.  .|.+..+||+||+++.+...         .|.|+..+|+|+++|+++|.+.|+..        .......++. 
T Consensus       150 ~~g~i~~G~~g~aGEiGh~~~~~~~~---------~~~cg~~gc~e~~~S~~~l~~~~~~~--------~~~~~~~~~~~  212 (310)
T 3htv_A          150 MNGAPWTGAHGVAGELGHIPLGDMTQ---------HCACGNPGCLETNCSGMALRRWYEQQ--------PRNYPLRDLFV  212 (310)
T ss_dssp             ETTEEECCSSSCCCC------------------------------CCSSSHHHHHHHHTTS--------CCSSCGGGHHH
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCC---------CCCCCCCHHHHHHCCHHHHHHHHHHC--------CCCCCHHHHHH
T ss_conf             47864558765445454023579987---------45677511445532599999999753--------12352899997


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHH-HHHCCEEEE-E
Q ss_conf             83689579999999999999999999997489973899656776556772764899998837983788-973887999-5
Q gi|254780280|r  237 SKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKEL-MRQIPTYVI-T  314 (348)
Q Consensus       237 ~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~-l~~ipv~~~-~  314 (348)
                      ....|+    +++.+.+++++.++|++++|+|+. |||||+++.. ..++ .+.+.+.+.+.. +..+ -+.++|..+ .
T Consensus       213 ~~~~~~----~~~~~~~~~~~~ia~li~~ldp~~-IVigG~i~~~-~~~~-~~~l~~~~~~~~-~~~~~~~~~~i~~s~~  284 (310)
T 3htv_A          213 HAENAP----FVQSLLENAARAIATSINLFDPDA-VILGGGVMDM-PAFP-RETLVAMTQKYL-RRPLPHQVVRFIAASS  284 (310)
T ss_dssp             HHTTCH----HHHHHHHHHHHHHHHHHHHHCCSE-EEEECTTTTS-TTCC-HHHHHHHHHHTS-CTTTTTTTCEEEECCC
T ss_pred             HHHCCC----HHHHHHHHHHHHHHHHHHHCCCCE-EEEECHHHCC-HHHH-HHHHHHHHHHHH-CCCCCCCCCEEEECCC
T ss_conf             763360----554567789999998987518988-9980825506-4678-999999999985-2235767887998885


Q ss_pred             CCCCHHHHHHHHHHCC
Q ss_conf             7872277599987380
Q gi|254780280|r  315 NPYIAIAGMVSYIKMT  330 (348)
Q Consensus       315 ~~~agl~GAa~~~r~~  330 (348)
                      +++++++|||.++.++
T Consensus       285 ~~~~~~~GAA~la~~~  300 (310)
T 3htv_A          285 SDFNGAQGAAILAHQR  300 (310)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             7758899999999998