Query gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 348 No_of_seqs 156 out of 1802 Neff 8.9 Searched_HMMs 23785 Date Mon May 30 07:31:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780280.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1sz2_A Glucokinase, glucose ki 100.0 0 0 337.1 29.9 315 12-332 13-329 (332) 2 2q2r_A Glucokinase 1, putative 100.0 0 0 325.1 23.9 315 7-329 24-371 (373) 3 1z05_A Transcriptional regulat 100.0 7.2E-39 3E-43 256.8 29.6 291 10-328 105-415 (429) 4 3eo3_A Bifunctional UDP-N-acet 100.0 8.4E-39 3.5E-43 256.4 26.4 286 11-328 18-327 (333) 5 2gup_A ROK family protein; sug 100.0 1.4E-39 5.7E-44 261.3 22.3 278 11-331 2-289 (292) 6 2qm1_A Glucokinase; alpha-beta 100.0 4.4E-38 1.8E-42 252.0 25.8 297 10-333 3-325 (326) 7 3epq_A Putative fructokinase; 100.0 5.8E-39 2.4E-43 257.4 19.1 273 14-330 4-290 (302) 8 2aa4_A Mannac kinase, putative 100.0 6.4E-38 2.7E-42 251.0 23.3 278 13-330 1-289 (289) 9 3mcp_A Glucokinase; structural 100.0 1.6E-38 6.9E-43 254.6 18.4 293 12-329 8-324 (366) 10 1z6r_A MLC protein; transcript 100.0 9E-36 3.8E-40 237.7 29.3 290 10-327 82-391 (406) 11 2hoe_A N-acetylglucosamine kin 100.0 3.7E-35 1.6E-39 233.9 25.4 273 10-330 84-372 (380) 12 3htv_A D-allose kinase, alloki 100.0 3E-36 1.3E-40 240.6 18.6 278 12-330 6-300 (310) 13 2ap1_A Putative regulator prot 100.0 3.7E-34 1.6E-38 227.7 20.0 291 10-329 22-326 (327) 14 3lm2_A Putative kinase; struct 100.0 2.2E-32 9.4E-37 216.7 18.7 218 13-332 6-224 (226) 15 1woq_A Inorganic polyphosphate 100.0 8.7E-32 3.7E-36 213.1 20.5 239 10-330 9-262 (267) 16 2ch5_A NAGK protein; transfera 100.0 1.1E-27 4.7E-32 187.7 18.8 297 10-338 3-333 (347) 17 2e2o_A Hexokinase; acetate and 100.0 1.3E-27 5.5E-32 187.3 13.4 276 12-335 1-293 (299) 18 1zc6_A Probable N-acetylglucos 99.9 8.6E-22 3.6E-26 151.4 14.4 277 9-333 7-297 (305) 19 2ews_A Pantothenate kinase; PA 99.8 1.1E-21 4.8E-26 150.6 -3.1 260 13-328 21-287 (287) 20 3hm8_A Hexokinase-3; glucose, 99.5 5.5E-11 2.3E-15 84.6 23.7 289 14-329 60-436 (445) 21 3o8m_A Hexokinase; rnaseh-like 99.4 1.3E-09 5.6E-14 76.1 27.2 289 15-330 82-470 (485) 22 3f9m_A Glucokinase; hexokinase 99.4 3.8E-10 1.6E-14 79.4 23.6 289 15-328 79-459 (470) 23 1cza_N Hexokinase type I; stru 99.4 9.4E-10 4E-14 77.0 24.7 77 243-327 822-905 (917) 24 1bdg_A Hexokinase; phosphotran 99.4 2.5E-09 1.1E-13 74.3 26.7 290 14-330 69-447 (451) 25 1zbs_A Hypothetical protein PG 99.4 6.9E-10 2.9E-14 77.8 21.5 265 15-329 2-280 (291) 26 2yhx_A Hexokinase B; transfera 99.4 7E-09 3E-13 71.6 26.2 287 15-330 63-443 (457) 27 1cza_N Hexokinase type I; stru 99.4 2.6E-09 1.1E-13 74.3 23.9 287 14-327 79-457 (917) 28 1zxo_A Conserved hypothetical 99.2 3.5E-10 1.5E-14 79.6 13.0 259 15-329 2-278 (291) 29 1hux_A Activator of (R)-2-hydr 99.0 1E-07 4.3E-12 64.4 17.3 92 11-123 1-93 (270) 30 3p4i_A Acetate kinase; structu 98.7 4.4E-06 1.8E-10 54.4 19.1 51 231-281 278-328 (392) 31 1saz_A Probable butyrate kinas 98.6 1.9E-05 7.9E-10 50.5 17.9 297 12-336 1-355 (381) 32 2iir_A Acetate kinase; transfe 98.5 2.6E-05 1.1E-09 49.6 16.9 50 232-281 286-335 (403) 33 1g99_A Acetate kinase; alpha/b 98.5 4.6E-05 1.9E-09 48.1 17.8 101 232-338 286-407 (408) 34 3khy_A Propionate kinase; csgi 98.4 7.2E-05 3E-09 46.8 17.0 50 232-281 277-326 (384) 35 2i7n_A Pantothenate kinase 1; 98.2 5.8E-05 2.4E-09 47.4 12.8 75 241-325 279-356 (360) 36 2e1z_A Propionate kinase; TDCD 98.1 0.00045 1.9E-08 41.9 16.5 135 138-281 205-343 (415) 37 3bex_A Type III pantothenate k 98.0 0.00017 7E-09 44.6 12.5 235 15-328 5-247 (249) 38 3ll3_A Gluconate kinase; xylul 97.8 0.00029 1.2E-08 43.1 10.2 77 242-332 367-443 (504) 39 3h1q_A Ethanolamine utilizatio 97.6 0.0027 1.1E-07 37.1 15.3 97 14-120 29-136 (272) 40 2h3g_X Biosynthetic protein; p 97.6 0.0028 1.2E-07 37.0 14.6 246 15-334 2-258 (268) 41 3g25_A Glycerol kinase; IDP007 97.6 0.00067 2.8E-08 40.9 9.8 71 243-328 378-450 (501) 42 3i8b_A Xylulose kinase; strain 97.6 0.00064 2.7E-08 41.0 9.6 63 14-76 6-74 (515) 43 2f9w_A Pantothenate kinase; CO 97.5 0.004 1.7E-07 36.1 13.1 125 15-160 25-155 (271) 44 3hz6_A Xylulokinase; xylulose, 97.5 0.0011 4.5E-08 39.6 9.9 31 11-42 1-33 (511) 45 3jvp_A Ribulokinase; PSI-II, N 97.5 0.00038 1.6E-08 42.3 7.4 33 11-43 1-35 (572) 46 3i33_A Heat shock-related 70 k 97.4 0.00035 1.5E-08 42.6 6.8 24 10-33 20-43 (404) 47 3h6e_A Carbohydrate kinase, FG 97.4 0.0013 5.4E-08 39.1 9.5 73 245-330 364-436 (482) 48 2itm_A Xylulose kinase, xylulo 97.3 0.0034 1.4E-07 36.5 10.7 61 15-76 2-77 (484) 49 3l0q_A Xylulose kinase; xlylul 97.3 0.0017 7.3E-08 38.3 8.8 69 245-328 419-488 (554) 50 3ifr_A Carbohydrate kinase, FG 97.3 0.0037 1.6E-07 36.3 10.4 75 242-330 374-448 (508) 51 3h3n_X Glycerol kinase; ATP-bi 97.1 0.0047 2E-07 35.6 10.0 71 243-328 377-449 (506) 52 2p3r_A Glycerol kinase; glycer 97.1 0.0052 2.2E-07 35.4 9.6 73 243-330 375-449 (510) 53 2zf5_O Glycerol kinase; hypert 97.0 0.012 4.9E-07 33.2 11.1 71 243-328 369-439 (497) 54 2uyt_A Rhamnulokinase; rhamnos 97.0 0.0021 8.7E-08 37.8 6.9 63 14-76 5-83 (489) 55 2d4w_A Glycerol kinase; alpha 97.0 0.0071 3E-07 34.5 9.5 71 243-328 377-449 (504) 56 2v7y_A Chaperone protein DNAK; 96.9 0.00068 2.9E-08 40.8 3.8 76 241-329 275-350 (509) 57 2w40_A Glycerol kinase, putati 96.7 0.012 5.1E-07 33.1 9.2 72 243-328 380-453 (503) 58 2dpn_A Glycerol kinase; thermu 96.7 0.0088 3.7E-07 34.0 8.4 68 246-327 371-443 (495) 59 1vhx_A Putative holliday junct 96.6 0.0064 2.7E-07 34.8 7.0 96 11-112 1-98 (150) 60 1yuw_A Heat shock cognate 71 k 96.4 0.023 9.5E-07 31.4 8.7 74 242-328 304-378 (554) 61 1iv0_A Hypothetical protein; r 96.3 0.0087 3.7E-07 34.0 6.1 92 13-111 1-92 (98) 62 3d2f_A Heat shock protein homo 96.1 0.022 9.1E-07 31.5 7.4 19 15-33 4-22 (675) 63 3djc_A Type III pantothenate k 96.1 0.019 7.9E-07 31.9 6.9 134 12-161 2-143 (266) 64 1nu0_A Hypothetical protein YQ 96.0 0.027 1.1E-06 30.9 7.6 96 11-112 1-96 (138) 65 2ivn_A O-sialoglycoprotein end 95.9 0.066 2.8E-06 28.5 17.2 278 13-346 1-316 (330) 66 1e4f_T Cell division protein F 92.8 0.25 1.1E-05 24.9 6.1 72 1-77 1-86 (419) 67 3en9_A Glycoprotease, O-sialog 92.8 0.37 1.6E-05 23.9 19.8 280 12-346 5-320 (540) 68 1jce_A ROD shape-determining p 91.6 0.51 2.2E-05 23.0 16.6 24 98-121 117-140 (344) 69 3cet_A Conserved archaeal prot 90.8 0.2 8.2E-06 25.6 3.7 36 241-277 249-284 (334) 70 3eno_A Putative O-sialoglycopr 89.6 0.77 3.2E-05 22.0 7.2 90 242-345 224-320 (334) 71 2kho_A Heat shock protein 70; 84.4 0.47 2E-05 23.3 2.4 20 14-33 3-22 (605) 72 2gel_A Putative GRAM negative 82.6 1.8 7.6E-05 19.7 7.4 98 13-120 1-102 (231) 73 1dkg_D Molecular chaperone DNA 76.7 0.95 4E-05 21.4 1.9 20 14-33 3-22 (383) 74 2a6a_A Hypothetical protein TM 76.3 2.9 0.00012 18.4 7.3 98 11-119 11-112 (218) 75 3bzc_A TEX; helix-turn-helix, 75.2 3 0.00013 18.3 7.7 99 13-121 329-430 (785) 76 2nrh_A Transcriptional activat 64.2 2.2 9.1E-05 19.2 1.4 49 260-331 159-207 (219) 77 1u6z_A Exopolyphosphatase; alp 55.5 7.5 0.00031 15.9 8.0 108 1-119 1-125 (513) 78 2zgy_A Plasmid segregation pro 53.8 8 0.00034 15.7 5.3 73 242-327 246-319 (320) 79 3nuw_A 2-OXO-3-deoxygalactonat 51.9 8.5 0.00036 15.5 8.3 49 14-64 7-59 (295) 80 1hjr_A Holliday junction resol 46.3 10 0.00044 15.0 5.1 33 15-47 3-37 (158) 81 2fxu_A Alpha-actin-1, actin, a 42.6 12 0.0005 14.6 6.1 59 271-338 296-358 (375) 82 1t6c_A Exopolyphosphatase; alp 35.7 15 0.00064 13.9 9.8 106 4-119 4-126 (315) 83 1k8k_A ARP3, actin-like protei 34.8 16 0.00066 13.8 2.7 20 13-32 5-24 (418) 84 1k8k_B ARP2, actin-like protei 30.6 8.6 0.00036 15.5 0.0 22 12-33 5-26 (394) 85 2fsj_A Hypothetical protein TA 28.3 20 0.00085 13.2 4.1 74 243-330 270-345 (346) 86 3dwl_A Actin-related protein 3 22.4 26 0.0011 12.5 1.3 17 16-32 8-24 (427) No 1 >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* Probab=100.00 E-value=0 Score=337.12 Aligned_cols=315 Identities=30% Similarity=0.511 Sum_probs=267.6 Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCCC Q ss_conf 77379998575118999987799808899974388735889999999972234565546999730441685564213566 Q gi|254780280|r 12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHW 91 (348) Q Consensus 12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~~ 91 (348) ..=.|++||||||||+|++|+++.++...++++++++++++++|++++++. ..++.++||++||||+.+... ..+..+ T Consensus 13 ~~y~L~~DIGGT~ir~alvd~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~igI~~pGpv~~~~~~-~~~~~~ 90 (332) T 1sz2_A 13 TKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEH-KVEVKDGCIAIACPITGDWVA-MTNHTW 90 (332) T ss_dssp -CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHS-CCCCCEEEEEESSCCCSSEEC-CSSSCC T ss_pred CCEEEEEEECHHHHHHEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCEEE-EECCCC T ss_conf 328999998815432556989999897889878987647999999999865-998775999902564287346-631433 Q ss_pred CCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCEECCC Q ss_conf 66988999982898558821265432000015865535302434557666752799317620224543105886301135 Q gi|254780280|r 92 VIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISC 171 (348) Q Consensus 92 ~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~g~~~~ag 171 (348) .++..++...+...++.+.||+++.++++....+.....++. +....+..++++++|||.|.+...+...|.+..++ T Consensus 91 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~lgtG~G~g~~~~~~~~~g~~~~ag 167 (332) T 1sz2_A 91 AFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGG---AEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPG 167 (332) T ss_dssp CEEHHHHHHHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSS---CCCCTTCCEEEEEESSSEEEEEEEEETTEEEEEEC T ss_pred CCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCC---CCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCC T ss_conf 578689987642563566237332122444455646777376---77888626999837665656786034566543455 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHCCCHHHHHHHH Q ss_conf 67866667661023478999985318986487752222389999999874088864369888--9988368957999999 Q gi|254780280|r 172 EGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSK--DIVSKSEDPIALKAIN 249 (348) Q Consensus 172 E~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~--~~~~~~~D~~A~~~~~ 249 (348) |.||+.+.+....+....++ .|.|++.+|+|+++||++|.++|+++............... +......|+.+.++++ T Consensus 168 e~G~~~~~~~~~~~~~~~~~-~~~~~~~g~~E~~~Sg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (332) T 1sz2_A 168 EGGHVDFAPNSEEEAIILEI-LRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDITERALADSCTDCRRALS 246 (332) T ss_dssp CGGGSBCCCCSHHHHHHHHH-HHHHSSSCBGGGTSSHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHTCCHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHH-HHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH T ss_conf 55665667765033211112-22036743001013121389999999742688831146278999987301267899999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHHHHHHHHC Q ss_conf 99999999999999974899738996567765567727648999988379837889738879995787227759998738 Q gi|254780280|r 250 LFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAGMVSYIKM 329 (348) Q Consensus 250 ~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~GAa~~~r~ 329 (348) .+.++++..+.++++.+.|.+.|||||||+.++.+++.++.|+++|.+++++.++++++||++++++|+||+|||+|+|| T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~IviGGGv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ipv~~~~~~dagliGAa~~ar~ 326 (332) T 1sz2_A 247 LFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQ 326 (332) T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECSSSGGGHHHHHHSSHHHHHHCCGGGHHHHTTCCEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 99999999999999985899789996417750476628099999998446356686068889998985749999999998 Q ss_pred CCC Q ss_conf 001 Q gi|254780280|r 330 TDC 332 (348) Q Consensus 330 ~~~ 332 (348) +-. T Consensus 327 ~l~ 329 (332) T 1sz2_A 327 TLG 329 (332) T ss_dssp HTT T ss_pred HHC T ss_conf 611 No 2 >2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} Probab=100.00 E-value=0 Score=325.08 Aligned_cols=315 Identities=17% Similarity=0.211 Sum_probs=240.6 Q ss_pred CCCCCCCCEEEEEECCCCEEEEEEECCCCEEEE----EEEECCCCCCCHHHHHHHHHHHCC---CCCCCEEEEEEEEEEE Q ss_conf 587667737999857511899998779980889----997438873588999999997223---4565546999730441 Q gi|254780280|r 7 KDFPIAFPVLLADIGGTNVRFAILRSMESEPEF----CCTVQTSDYENLEHAIQEVIYRKI---SIRLRSAFLAIATPIG 79 (348) Q Consensus 7 ~~~~~~~~vL~iDIGGT~ir~glv~~~~~~i~~----~~~~~t~~~~~~~~~i~~~l~~~~---~~~~~~igi~v~Gpv~ 79 (348) ++-+.++ +|++||||||+|+|+++..+..+.. ..+.++.+++++.+.+.+++++.. ..++.+++|++||||+ T Consensus 24 ~~~~~pl-~Lv~DIGGTnir~alv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~ia~pGpv~ 102 (373) T 2q2r_A 24 PAWNAPL-TFVGDVGGTSARMGFVREGKNDSVHACVTRYSMKRKDITEIIEFFNEIIELMPASVMKRVKAGVINVPGPVT 102 (373) T ss_dssp GGGCSCE-EEEEEECSSEEEEEEEEECGGGCEEEEEEEEECTTCBGGGHHHHHHHHHHHSCHHHHTTEEEEEEEESSCEE T ss_pred CCCCCCC-EEEEEECCHHEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEE T ss_conf 5667994-899997823332278988997478888852168889999999999999999987548887879998230277 Q ss_pred CCCEEE-ECCCCCCCCHHH-HHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHC--------------CCCCCCCCCCC Q ss_conf 685564-213566669889-99982898558821265432000015865535302--------------43455766675 Q gi|254780280|r 80 DQKSFT-LTNYHWVIDPEE-LISRMQFEDVLLINDFEAQALAICSLSCSNYVSIG--------------QFVEDNRSLFS 143 (348) Q Consensus 80 ~~~~~~-~~~~~~~~~~~~-l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg--------------~~~~~~~~~~~ 143 (348) ++.... .+++.|.+...+ +.+.++..+|.++||++|.+|+++.+.+++..++. +...+.+.+.. T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ND~~A~a~g~~~~~~nd~~~~~~~e~~~~~~~~~~~~~~~G~~~g~~ 182 (373) T 2q2r_A 103 GGAVGGPFNNLKGIARLSDYPKALFPPGHSAILNDLEAGGFGVLAVSDAHVFSEYFGVMWEGTQWRTCEQEPAGSVIGRG 182 (373) T ss_dssp TTTEECCCSSSBSCEEGGGSCTTTSCTTSEEEEEHHHHHHHHHHHHHHTTCHHHHEEEEECCTTTTTTCSSCTTSSCCSS T ss_pred CCEEEEEECCCCCCCCHHHHHHHHCCCCCCEECCHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCC T ss_conf 99789995167543221577998648865303123667740986770361666544321145554542200243455656 Q ss_pred CEEEECCCCEEEEEEEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHH Q ss_conf 27993176202245431058--8630113567866667661023478999985318986487752222389999999874 Q gi|254780280|r 144 SRVIVGPGTGLGISSVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIA 221 (348) Q Consensus 144 ~~~~ig~GtG~g~~~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~ 221 (348) ..+++++|||+|.++++++. .|+++.++|+||+.+++....+ ......|.|+.++|+|+++||+||.++|+++... T Consensus 183 ~~~~i~~GTGlG~~~i~~g~~~~G~~~~agE~Gh~~~~~~~~~~--~~~~~~~~~~~~~~~E~~~Sg~gl~~~y~~l~~~ 260 (373) T 2q2r_A 183 RCLVLAPGTGLGSSLIYYNPPMNQHIVVPLELGSQTLPMRKDID--YIQTLHAELKLFPNYENMVSGAGLEFHYRQVVRG 260 (373) T ss_dssp CEEEEEESSSEEEEEEEECC---CEEEEEECGGGSBCCCSSCHH--HHHHHHHHHTSCCBHHHHSSHHHHHHHHHHHHTT T ss_pred CEEEEECCCCCCEEEEECCEECCCCCCCCCCCEEEEECCCCHHH--HHHHHHCCCCCCCCHHHHHCHHHHHHHHHHHHHH T ss_conf 58999337876346898985157766667775135337986065--6665541278866366752577799999999752 Q ss_pred CCCCCCCCCCHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC-----HHHHHH Q ss_conf 08886436988899--88368957999999999999999999999748997389965677655677276-----489999 Q gi|254780280|r 222 DGFESNKVLSSKDI--VSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRN-----SSFRES 294 (348) Q Consensus 222 ~~~~~~~~~~~~~~--~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~-----~~f~~~ 294 (348) ... ..++.++ +++++|+.|++++++|+++||+++++++++++|+. ||++||++.+...++.. +.|++. T Consensus 261 ~~~----~~~~~~i~~~a~~gD~~A~~~~~~~~~~La~~l~~l~~~~~p~~-iVigGG~~~~~~~~~~~~~~~~~~~~~~ 335 (373) T 2q2r_A 261 SRP----PCSAGEIAKLASEGDANACKAMKKYHEYLMRVGSEASMALLPLT-IVLVGDNIVNNAFFYRNPQNLKEMHHEA 335 (373) T ss_dssp SSC----CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSE-EEECSHHHHHTHHHHHSHHHHHHHHHHH T ss_pred CCC----CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEEHHHCCCHHHHHHHHHHHHHHHH T ss_conf 032----21069999998659989999999999999999999999989698-9999783651613342499999999997 Q ss_pred HHHCCCHHHHHHHCCEEEE-ECCCCHHHHHHHHHHC Q ss_conf 8837983788973887999-5787227759998738 Q gi|254780280|r 295 FENKSPHKELMRQIPTYVI-TNPYIAIAGMVSYIKM 329 (348) Q Consensus 295 f~~~~~~~~~l~~ipv~~~-~~~~agl~GAa~~~r~ 329 (348) |..+.++.++++++|++.. +..+++|+||+.|+.+ T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~n~~l~Ga~~~a~~ 371 (373) T 2q2r_A 336 LNHEMERFGFQSRVSYLRQKKLLNLNLMGCYRCGLD 371 (373) T ss_dssp TCSGGGGGTSGGGCEEEEECSCCCHHHHHHHHHHHH T ss_pred HHCCCCCCHHHHCCCEEEEECCCCCCHHHHHHHHHH T ss_conf 523456512432681699861789657989999864 No 3 >1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=100.00 E-value=7.2e-39 Score=256.83 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=212.2 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCC--C----CHHHHHHHHHHHCC--CCCCCEEEEEEEEEEECC Q ss_conf 667737999857511899998779980889997438873--5----88999999997223--456554699973044168 Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDY--E----NLEHAIQEVIYRKI--SIRLRSAFLAIATPIGDQ 81 (348) Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~--~----~~~~~i~~~l~~~~--~~~~~~igi~v~Gpv~~~ 81 (348) |-...+|++|||+|+++++++|.. +++..+.+.++... + .+.+.+++++.+.. ..++.+|||++||+|+.. T Consensus 105 ~~~~~~iGIdig~~~i~~~l~dl~-G~il~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~gIgi~~pG~vd~~ 183 (429) T 1z05_A 105 NLGWQFLSMRLGRGYLTIALHELG-GEVLIDTKIDIHEIDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSE 183 (429) T ss_dssp CTTEEEEEEEEETTEEEEEEEETT-SCEEEEEEEECCCCBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETT T ss_pred CCEEEEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC T ss_conf 880499999989998999998499-8789999834887887899999999999999975766146579999627861688 Q ss_pred C--EEEECCCCCC-CCH-HHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEE Q ss_conf 5--5642135666-698-89999828985588212654320000158655353024345576667527993176202245 Q gi|254780280|r 82 K--SFTLTNYHWV-IDP-EELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGIS 157 (348) Q Consensus 82 ~--~~~~~~~~~~-~~~-~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~ 157 (348) . ....+++.|. ++. ..+.+.++ .||.++||++|.+++|.+++. ......++++..|+|+|.+ T Consensus 184 ~g~~~~~~~~~~~~~~l~~~l~~~~~-~pV~v~NDa~a~alaE~~~g~-------------~~~~~~~v~i~~g~GiG~g 249 (429) T 1z05_A 184 QGIVLQMPHYNVKNLALGPEIYKATG-LPVFVANDTRAWALAEKLFGH-------------SQDVDNSVLISIHHGLGAG 249 (429) T ss_dssp TTEEEECSSSBCSSBCHHHHHHHHHC-SCEEEEEHHHHHHHHHHHHST-------------TTTCSSEEEEEESSSEEEE T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHC-CCEEEECCCCCCCHHHHHCCC-------------CCCCCCCEEEEECCCCCCC T ss_conf 87462489888589845899999979-988994464521448776186-------------6688864157744787444 Q ss_pred EEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCC---CCCCCH Q ss_conf 431058--863011356786666766102347899998531898648775222238999999987408886---436988 Q gi|254780280|r 158 SVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFES---NKVLSS 232 (348) Q Consensus 158 ~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~---~~~~~~ 232 (348) +++++. .|.+..++|+||+.+.+.+. .|.||+.+|+|+++|+++|.+.++.......... .+.+.. T Consensus 250 ii~~G~l~~G~~~~aGeiGh~~v~~~g~---------~c~cG~~gclE~~~S~~al~~~~~~~~~~~~~~~l~~~~~~~~ 320 (429) T 1z05_A 250 IVLDGRVLQGRHGNIGELGHIQIDPQGK---------RCHCGNYGCLETVASSQAIRDQVTARIQAGEPSCLATVEEISI 320 (429) T ss_dssp EEETTEECCTTTTCTTBCTTSBCCTTCC---------BCTTSCBSBTHHHHSHHHHHHHHHHHHHTTCCCTTTTCSSCCH T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCC---------CCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH T ss_conf 3579811006887552555478679997---------5768887860104049999999998761366432245333899 Q ss_pred HH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCE Q ss_conf 89--9883689579999999999999999999997489973899656776556772764899998837983788973887 Q gi|254780280|r 233 KD--IVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPT 310 (348) Q Consensus 233 ~~--~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv 310 (348) .+ .+++.+|+.|.+++++++++||.+++|++++++|+. |||||+++.....++ +.+++.+.++ .+..+.++++| T Consensus 321 ~~i~~~a~~gD~~a~~ii~~~~~~La~~i~nl~~~ldPe~-IVlgG~v~~~~~~l~--~~i~~~i~~~-~~~~~~~~~~I 396 (429) T 1z05_A 321 EDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINLFNPEK-ILIGGVINQAKSILY--PSIEQCIREQ-SLPVYHQDLKL 396 (429) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSE-EEEESGGGGGHHHHH--HHHHHHHHHH-SCHHHHTTCEE T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECHHHHCHHHHH--HHHHHHHHHH-CCCCCCCCCEE T ss_conf 9999999839899999999999999999999999879898-999692574768899--9999999985-03125789889 Q ss_pred EEE-ECCCCHHHHHHHHHH Q ss_conf 999-578722775999873 Q gi|254780280|r 311 YVI-TNPYIAIAGMVSYIK 328 (348) Q Consensus 311 ~~~-~~~~agl~GAa~~~r 328 (348) ..+ .+++++++|||.+++ T Consensus 397 ~~s~l~~~a~l~GAAlla~ 415 (429) T 1z05_A 397 VESRFYKQATMPGAALIKQ 415 (429) T ss_dssp EECSCSSCTTHHHHHHHHH T ss_pred EECCCCCHHHHHHHHHHHH T ss_conf 9899798199999999999 No 4 >3eo3_A Bifunctional UDP-N-acetylglucosamine 2- epimerase/N-acetylmannosamine kinase; non-protein kinase, sialic acid biosynthesis; 2.84A {Homo sapiens} Probab=100.00 E-value=8.4e-39 Score=256.41 Aligned_cols=286 Identities=18% Similarity=0.146 Sum_probs=203.2 Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEEEEEEEC-CCCCCCHH----HHHHHHHHHC--CCCCCCEEEEEEEEEEECCCE Q ss_conf 6773799985751189999877998088999743-88735889----9999999722--345655469997304416855 Q gi|254780280|r 11 IAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQ-TSDYENLE----HAIQEVIYRK--ISIRLRSAFLAIATPIGDQKS 83 (348) Q Consensus 11 ~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~-t~~~~~~~----~~i~~~l~~~--~~~~~~~igi~v~Gpv~~~~~ 83 (348) -+|+.|+|||||||+|++++|.. ++++.+.+.+ +..++... +.+.+++.+. ...++.++|||+||+|+.... T Consensus 18 ~~~~~lGIDiGGT~~~~al~d~~-G~vl~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~igia~pG~vd~~~g 96 (333) T 3eo3_A 18 GTLSALAVDLGGTNLRVAIVSMK-GEIVKKYTQFNPKTYEERINLILQMCVEAAAEAVKLNCRILGVGISTGGRVNPREG 96 (333) T ss_dssp -CCEEEEEEECSSEEEEEEEETT-SCEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEC--------- T ss_pred CCCEEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC T ss_conf 88549999977113999999599-97999999689999789999999999999998612478667999942874656658 Q ss_pred --EEECCC--CCC-CC-HHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEE Q ss_conf --642135--666-69-889999828985588212654320000158655353024345576667527993176202245 Q gi|254780280|r 84 --FTLTNY--HWV-ID-PEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGIS 157 (348) Q Consensus 84 --~~~~~~--~~~-~~-~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~ 157 (348) ...+++ .|. ++ ...+.+.++ .||.++||+++.+++|.+++. .......+++..|+|+|.+ T Consensus 97 ~v~~s~~~~~~~~~~~l~~~l~~~~~-~pv~v~ND~~a~a~aE~~~g~-------------~~~~~~~~~i~~g~Gig~~ 162 (333) T 3eo3_A 97 IVLHSTKLIQEWNSVDLRTPLSDTLH-LPVWVDNDGNCAALAERKFGQ-------------GKGLENFVTLITGTGIGGG 162 (333) T ss_dssp ---------------CCHHHHHHHHC-SCEEEECHHHHHHHHHHHTST-------------TTTCSSEEEEEESSSEEEE T ss_pred CEECCCCCCCCCCCCCHHHHHHHHCC-CCEEECCCCCCCHHHHHHCCC-------------CCCCCCCEEEEECCCCCEE T ss_conf 24303555420137755566653239-837664653200168876176-------------6689873289971566303 Q ss_pred EEECC--CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCC-------CCC Q ss_conf 43105--886301135678666676610234789999853189864877522223899999998740888-------643 Q gi|254780280|r 158 SVIRA--KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFE-------SNK 228 (348) Q Consensus 158 ~~~~~--~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~-------~~~ 228 (348) ...++ ..|.+..++|+||+.+.+... .|.|++++|+|+++|+++|.++|+.+....... ... T Consensus 163 ~~~~g~~~~G~~~~~ge~Gh~~v~~~~~---------~~~~g~~g~le~~~S~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 233 (333) T 3eo3_A 163 IIHQHELIHGSSFCAAELGHLVVSLDGP---------DCSCGSHGCIEAYASGMALQREAKKLHDEDLLLVEGMSVPKDE 233 (333) T ss_dssp EEETTEECCCTTSCCCCGGGCBCCSSCC---------BCTTSCBSBHHHHHSHHHHHHHHHHHHHTTCSCCTTCCCCSSC T ss_pred EEEECCEEECCCCCCCEEEEEEECCCCC---------CCCCCCCCCHHHEECHHHHHHHHHHHHCCCCCHHHHCCCCCCC T ss_conf 6750641307996444126645168986---------5535678970014219999999998626662011100235432 Q ss_pred CCCH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH Q ss_conf 6988--89988368957999999999999999999999748997389965677655677276489999883798378897 Q gi|254780280|r 229 VLSS--KDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMR 306 (348) Q Consensus 229 ~~~~--~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~ 306 (348) .... ...+++.+|+.|.+++++++++|+..++|++++|+|+ .|||||+++..+.+.+.+ . ++.+ .+. ..+ T Consensus 234 ~~~~~~i~~~a~~GD~~a~~i~~~~~~~la~~i~nli~~l~p~-~IvlgG~i~~~~~~~l~~-~-l~~~----~~~-~~~ 305 (333) T 3eo3_A 234 AVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVNILHTMNPS-LVILSGVLASHYIHIVKD-V-IRQQ----ALS-SVQ 305 (333) T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-EEEEESTTHHHHHHHHHH-H-HHHH----SCG-GGT T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEEECHHHHHHHHHHHH-H-HHHH----CCC-CCC T ss_conf 2557887887741778899999999999999999999987979-899949788707999999-9-9986----242-458 Q ss_pred HCCEEEEECCCCHHHHHHHHHH Q ss_conf 3887999578722775999873 Q gi|254780280|r 307 QIPTYVITNPYIAIAGMVSYIK 328 (348) Q Consensus 307 ~ipv~~~~~~~agl~GAa~~~r 328 (348) ++||..+.-.|++++|||.++- T Consensus 306 ~~~i~~s~l~da~~~GAA~lal 327 (333) T 3eo3_A 306 DVDVVVSDLVDPALLGAASMVL 327 (333) T ss_dssp TCEEEECCCSSHHHHHHHHHHH T ss_pred CCEEEECCCCCHHHHHHHHHHH T ss_conf 9859956789677799999999 No 5 >2gup_A ROK family protein; sugar kinase, APC80695, sucrose, structural genomics, PSI, protein structure initiative; HET: SUC; 2.01A {Streptococcus pneumoniae TIGR4} SCOP: c.55.1.10 c.55.1.10 Probab=100.00 E-value=1.4e-39 Score=261.31 Aligned_cols=278 Identities=17% Similarity=0.130 Sum_probs=193.6 Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCC--EEEECC Q ss_conf 677379998575118999987799808899974388735889999999972234565546999730441685--564213 Q gi|254780280|r 11 IAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQK--SFTLTN 88 (348) Q Consensus 11 ~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~--~~~~~~ 88 (348) .+|.+|+|||||||||++++|.. +++..+.+++|. ++++++++.+.+.....++.++||++||||+... ....++ T Consensus 2 ~~~~~~~iDiGGT~ir~~l~d~~-g~ii~~~~~~t~--~~~~~~~~~i~~~~~~~~i~~Igia~pG~vd~~~g~i~~~~~ 78 (292) T 2gup_A 2 NAMTIATIDIGGTGIKFASLTPD-GKILDKTSISTP--ENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSA 78 (292) T ss_dssp --CCEEEEEEETTEEEEEEECTT-CCEEEEEEECCC--SSHHHHHHHHHHHHTTSCCSEEEEEESSEECTTTCBEESCCS T ss_pred CCCEEEEEEECCHHEEEEEECCC-CCEEEEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC T ss_conf 98889999977024699999189-969999997287--659999999999866527867999606752156672024333 Q ss_pred CCCC--CCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCC--C Q ss_conf 5666--69889999828985588212654320000158655353024345576667527993176202245431058--8 Q gi|254780280|r 89 YHWV--IDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAK--D 164 (348) Q Consensus 89 ~~~~--~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~--~ 164 (348) ..|. ++..++.+.++ .||.++||++|.+++|...+ . ....++++..|+|+|.+++.++. . T Consensus 79 ~~~~~~~~~~~~~~~~~-~pv~~~ND~~a~a~aE~~~~-------------~--~~~~~~~v~ig~GiG~g~~~~g~~~~ 142 (292) T 2gup_A 79 VPYIHGFSWYEALSSYQ-LPVHLENDANCVGLSELLAH-------------P--ELENAACVVIGTGIGGAMIINGRLHR 142 (292) T ss_dssp SGGGSSSBHHHHTGGGC-CCEEEEEHHHHHHHHHHHHC-------------T--TCSSEEEEEESSSEEEEEEETTEEEC T ss_pred CCCCCCCCHHHHHHHCC-CCEEEECHHHHHHHHHHHHC-------------C--CCCCEEEEEECCCCCCCCCCCCEEEC T ss_conf 33335732689998619-94998216789989987626-------------6--53421478862654430022220341 Q ss_pred CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHCCCH Q ss_conf 6301135678666676610234789999853189864877522223899999998740888643698889--98836895 Q gi|254780280|r 165 SWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKD--IVSKSEDP 242 (348) Q Consensus 165 g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~D~ 242 (348) |.+..++|+||+.+. |.|+..+|+|+++|..++.+.+..... . +.+...+ .+++.+|+ T Consensus 143 G~~~~age~Gh~~~~--------------~~~~~~~~~e~~~s~~~l~~~~~~~~~---~---~~~~~~~i~~~a~~~d~ 202 (292) T 2gup_A 143 GRHGLGGEFGYMTTL--------------APAEKLNNWSQLASTGNMVRYVIEKSG---H---TDWDGRKIYQEAAAGNI 202 (292) T ss_dssp CTTSCTTCGGGCBSS--------------CCSSSCCBHHHHHSHHHHHHHHHHHHS---S---CCCCHHHHHHHHHTTCH T ss_pred CCCCCCCCCEEEEEC--------------CCCCCCCCHHHHHCCCHHHHHHHHHCC---C---CCHHHHHHHHHHHCCCH T ss_conf 788766411348952--------------377765534445155078999998616---7---53036789999973882 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCC-CHHHHHHHCCEEEE-ECCCCHH Q ss_conf 799999999999999999999974899738996567765567727648999988379-83788973887999-5787227 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKS-PHKELMRQIPTYVI-TNPYIAI 320 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~-~~~~~l~~ipv~~~-~~~~agl 320 (348) .+.++++.++++|+..++|++++|+|+ .|||||++++. .+++. .+.+.+.+.. .+........|..+ .++++++ T Consensus 203 ~~~~~~~~~~~~la~~i~nl~~~l~p~-~IvlgG~i~~~-~~~~~--~l~~~l~~~~~~~~~~~~~~~i~~s~~~~~a~l 278 (292) T 2gup_A 203 LCQEAIERMNRNLAQGLLNIQYLIDPG-VISLGGSISQN-PDFIQ--GVKKAVEDFVDAYEEYTVAPVIQACTYHADANL 278 (292) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCS-EEEEESGGGGC-HHHHH--HHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECHHHCC-HHHHH--HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHH T ss_conf 667999999999999998688842899-89996814343-88999--999999999864312478988997886982999 Q ss_pred HHHHHHHHCCC Q ss_conf 75999873800 Q gi|254780280|r 321 AGMVSYIKMTD 331 (348) Q Consensus 321 ~GAa~~~r~~~ 331 (348) +|||+++.|+. T Consensus 279 ~GAa~~~l~~~ 289 (292) T 2gup_A 279 YGALVNWLQEE 289 (292) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHH T ss_conf 99999999984 No 6 >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis V583} Probab=100.00 E-value=4.4e-38 Score=252.00 Aligned_cols=297 Identities=19% Similarity=0.180 Sum_probs=213.4 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCC-------HHHHHHHHHHHCC--CCCCCEEEEEEEEEEEC Q ss_conf 66773799985751189999877998088999743887358-------8999999997223--45655469997304416 Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYEN-------LEHAIQEVIYRKI--SIRLRSAFLAIATPIGD 80 (348) Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~-------~~~~i~~~l~~~~--~~~~~~igi~v~Gpv~~ 80 (348) -|..+||+||+||||++++++|. .+++....+.++...++ +.+.+.+++++.. ..++.++|+++||+++. T Consensus 3 ~m~~~vLgiD~GgT~~~~~l~d~-~G~il~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~igi~~~G~vd~ 81 (326) T 2qm1_A 3 AMDKKIIGIDLGGTTIKFAILTT-DGVVQQKWSIETNILEDGKHIVPSIIESIRHRIDLYNMKKEDFVGIGMGTPGSVDI 81 (326) T ss_dssp GGGCEEEEEEECSSEEEEEEEET-TCCEEEEEEEECCCTTTTTTHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSEEET T ss_pred CCCCEEEEEEECCCEEEEEEECC-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEC T ss_conf 78985999998734289999939-99799999971798889899999999999999997157656713785224330506 Q ss_pred CC--EEEECCCCCCCC--HHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEE Q ss_conf 85--564213566669--88999982898558821265432000015865535302434557666752799317620224 Q gi|254780280|r 81 QK--SFTLTNYHWVID--PEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGI 156 (348) Q Consensus 81 ~~--~~~~~~~~~~~~--~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~ 156 (348) .. ....+++.|... ..+........||.++||++|.+++|.+++ .......++++..|||+|. T Consensus 82 ~~~~i~~~~~l~~~~~~~l~~~l~~~~~~~v~v~ND~~a~a~ae~~~g-------------~~~~~~~~~~i~~gtGig~ 148 (326) T 2qm1_A 82 EKGTVVGAYNLNWTTVQPVKEQIESALGIPFALDNDANVAALGERWKG-------------AGENNPDVIFITLGTGVGG 148 (326) T ss_dssp TTTEEECBGGGTBCSCBCHHHHHHHHHCSCEEEEEHHHHHHHHHHHHS-------------TTTTCSCEEEEEESSSEEE T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHC-------------CCCCCCCEEEEECCCCEEE T ss_conf 668076303567444433899999987998898565889999999828-------------8889997789962786388 Q ss_pred EEEECC--CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCC------- Q ss_conf 543105--88630113567866667661023478999985318986487752222389999999874088864------- Q gi|254780280|r 157 SSVIRA--KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESN------- 227 (348) Q Consensus 157 ~~~~~~--~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~------- 227 (348) +++.++ ..|.+..++|+||+.+.+... .|.|+..+|+|.++|++++.+.++.+......... T Consensus 149 ~~i~~g~~~~g~~g~~~~~G~~~~~~~g~---------~~~~~~~g~~e~~~S~~~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (326) T 2qm1_A 149 GIVAAGKLLHGVAGCAGEVGHVTVDPNGF---------DCTCGKRGCLETVSSATGVVRVARHLSEEFAGDSELKQAIDD 219 (326) T ss_dssp EEEETTEECCCSSSCTTCGGGSBSCTTSC---------BCTTSSBCBTHHHHSHHHHHHHHHHHTTTCCSCCHHHHHHHH T ss_pred EEEECCEECCCCCCCCCCCCCCEECCCCC---------CCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHCC T ss_conf 99989861117998755024522368876---------554556774998726799999999874024762567764213 Q ss_pred -CCCC--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHH Q ss_conf -3698--8899883689579999999999999999999997489973899656776556772764899998837983788 Q gi|254780280|r 228 -KVLS--SKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKEL 304 (348) Q Consensus 228 -~~~~--~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~ 304 (348) .... ....+++.+|+.|.+++++++++|+..++++++.++|+. |||+|++......++ +.+++.+.+. .+... T Consensus 220 ~~~~~~~~~~~~a~~gD~~a~~i~~~~~~~l~~~i~~l~~~l~p~~-vvl~G~~~~~~~~l~--~~l~~~~~~~-~~~~~ 295 (326) T 2qm1_A 220 GQDVSSKDVFEFAEKGDHFALMVVDRVCFYLGLATGNLGNTLNPDS-VVIGGGVSAAGEFLR--SRVEKYFQEF-TFPQV 295 (326) T ss_dssp TCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSE-EEEEESGGGGTHHHH--HHHHHHHHHT-SCHHH T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECHHHHCCHHHH--HHHHHHHHHH-CCCCC T ss_conf 3200267789998717766899999988879999999999919998-999693672707899--9999999973-24134 Q ss_pred HHHCCEEEE-ECCCCHHHHHHHHHHCCCCC Q ss_conf 973887999-57872277599987380012 Q gi|254780280|r 305 MRQIPTYVI-TNPYIAIAGMVSYIKMTDCF 333 (348) Q Consensus 305 l~~ipv~~~-~~~~agl~GAa~~~r~~~~~ 333 (348) ...++|..+ .+++++++|||.++.+..++ T Consensus 296 ~~~~~i~~~~~~~~~~~~GAa~lal~~~~~ 325 (326) T 2qm1_A 296 RNSTKIKLAELGNEAGVIGAASLALQFSKE 325 (326) T ss_dssp HTTSEEEECSSGGGHHHHHHHHHGGGGCC- T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCC T ss_conf 789879988879838899999999998655 No 7 >3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3lm9_A* Probab=100.00 E-value=5.8e-39 Score=257.42 Aligned_cols=273 Identities=14% Similarity=0.095 Sum_probs=190.5 Q ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCC-------EEEE Q ss_conf 379998575118999987799808899974388735889999999972234565546999730441685-------5642 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQK-------SFTL 86 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~-------~~~~ 86 (348) -+++|||||||+|++++|. .+++..+.++||...+.+.+.+.+.+ ...++.++||++||||+.+. .... T Consensus 4 l~~GiDiGgT~i~~~l~d~-~G~il~~~~~pt~~~~~~~~~i~~~~---~~~~i~~igi~~pG~vd~~~~~~~~g~i~~~ 79 (302) T 3epq_A 4 MLGGIEAGGTXFVCAVGRE-DGTIIDRIEFPTXMPDETIEXVIQYF---SQFSLQAIGIGSFGPVDNDXTSQTYGTITAT 79 (302) T ss_dssp CEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCHHHHHHHHHHHH---TTSCCSEEEEEECSSEECCTTSTTTTEECCC T ss_pred EEEEEEECCCEEEEEEECC-CCCEEEEEEECCCCHHHHHHHHHHHH---HHHCCCEEEEEEEEEECCCCCCCEEEEEECC T ss_conf 7999996774799999969-99399999966899799999999999---8725765479111422356664101279348 Q ss_pred CCCCCC-CCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCC Q ss_conf 135666-6988999982898558821265432000015865535302434557666752799317620224543105886 Q gi|254780280|r 87 TNYHWV-IDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDS 165 (348) Q Consensus 87 ~~~~~~-~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~g 165 (348) +++.|. ++..+..++....||.++||++|++++|.+++ .......++++..|||+|.++++++... T Consensus 80 ~~~~w~~~~l~~~l~~~~~~pv~v~NDa~aaal~E~~~G-------------~~~~~~~~~~l~~gtGiG~gii~~g~~~ 146 (302) T 3epq_A 80 PXAGWRHYPFLQTVXNEMXIPVGFSTDVNAAALGEFLFG-------------EAXGLDSCLYITIGTGIGAGAIVEGRLL 146 (302) T ss_dssp SSTTTBTCCHHHHHHHHHCSCEEEEEHHHHHHHHHHHHS-------------TTTTCSCEEEEEESSSEEEEEEETTEEC T ss_pred CCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHHC-------------CCCCCCEEEEEEECCCEEEEEEECCCCC T ss_conf 987747885588886424535899745889999999726-------------6679970899993895367786579550 Q ss_pred CEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHH Q ss_conf 30113567866667661023478999985318986-48775222238999999987408886436988899883689579 Q gi|254780280|r 166 WIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRL-SAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIA 244 (348) Q Consensus 166 ~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~-~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~~~~~D~~A 244 (348) ....++|+||+.+.+..... .+|.|+..+ |+|.++|+++|.+.+... .+.++.+ T Consensus 147 ~G~~~ge~g~~~v~~~~~~~------~~~~cg~~g~c~e~~~s~~~l~~~~~~~-------------------~~~~~d~ 201 (302) T 3epq_A 147 QGLSHPEMGHIYIRRHPDDV------YQGXCPYHGDCFEGLASGPAIEARWGXK-------------------AADLSDI 201 (302) T ss_dssp CSSSCCCGGGCCCCCCTTCC------CCCSBTTTBSSHHHHHSHHHHHHHHSSC-------------------GGGGTTC T ss_pred CCCCCCCCCEEEECCCCCCC------CCCCCCCCCCCHHHHCCHHHHHHHHHHH-------------------HCCCCCC T ss_conf 37767643058740587534------4333465666256652888999998786-------------------5317653 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHC--CHHHHHHHHHCCCHHHHHH--HCCEEEE-ECCCCH Q ss_conf 9999999999999999999974899738996567765567727--6489999883798378897--3887999-578722 Q gi|254780280|r 245 LKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLR--NSSFRESFENKSPHKELMR--QIPTYVI-TNPYIA 319 (348) Q Consensus 245 ~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~--~~~f~~~f~~~~~~~~~l~--~ipv~~~-~~~~ag 319 (348) .+++++++++|+.+++|++++|+|+. |||||+++... +++. .+.+.+.+....++..+.. .++|..+ ++++++ T Consensus 202 ~~~~~~~~~~la~~i~~l~~~~dP~~-IviGG~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~ 279 (302) T 3epq_A 202 AQVWELEGYYIAQALAQYILILAPXX-IILGGGVMQQX-QVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAG 279 (302) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSC-EEEESSGGGCT-HHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHH T ss_conf 04888888888999999999879988-99989688646-67999999999999975310213557787799788688088 Q ss_pred HHHHHHHHHCC Q ss_conf 77599987380 Q gi|254780280|r 320 IAGMVSYIKMT 330 (348) Q Consensus 320 l~GAa~~~r~~ 330 (348) ++|||+++++. T Consensus 280 ~~GAa~la~~~ 290 (302) T 3epq_A 280 IIGTLVLAHQA 290 (302) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 8 >2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Probab=100.00 E-value=6.4e-38 Score=250.99 Aligned_cols=278 Identities=16% Similarity=0.134 Sum_probs=194.9 Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCC---HHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEC-- Q ss_conf 73799985751189999877998088999743887358---8999999997223456554699973044168556421-- Q gi|254780280|r 13 FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYEN---LEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLT-- 87 (348) Q Consensus 13 ~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~---~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~-- 87 (348) |.+|+||+||||+|++++|. .+++....+.|+...+. +.+.|.+++.+. ..++.++||++|||+++....... T Consensus 1 m~~igiD~GGT~~~~~l~d~-~G~il~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~~~~igIa~~G~v~~~~~~~~~~~ 78 (289) T 2aa4_A 1 MTTLAIDIGGTKLAAALIGA-DGQIRDRRELPTPASQTPEALRDALSALVSPL-QAHAQRVAIASTGIIRDGSLLALNPH 78 (289) T ss_dssp CCEEEEEECSSEEEEEEECT-TCCEEEEEEEECCSSCCHHHHHHHHHHHHTTT-GGGCSEEEEEESSEEETTEEECSSGG T ss_pred CCEEEEEECCCCEEEEEECC-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH-HHHCCEEEEEECCCEEECCEEEECCC T ss_conf 96999998800389999979-99699999997898878999999999999998-86558469970662121110474253 Q ss_pred CC-CCC-CCHHH-HHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECC-- Q ss_conf 35-666-69889-99982898558821265432000015865535302434557666752799317620224543105-- Q gi|254780280|r 88 NY-HWV-IDPEE-LISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRA-- 162 (348) Q Consensus 88 ~~-~~~-~~~~~-l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~-- 162 (348) +. .|. .+... +.+.++ .||.++||++|.++++....+. . ...++++..|.++|.+...++ T Consensus 79 ~~~~~~~~~l~~~l~~~~~-~pv~v~nd~~a~~~~e~~~~~~------------~--~~~~~~~~~~~~~g~~~~~~g~~ 143 (289) T 2aa4_A 79 NLGGLLHFPLVKTLEQLTN-LPTIAINDAQAAAWAEFQALDG------------D--ITDMVFITVSTGVGGGVVSGCKL 143 (289) T ss_dssp GGGGGTTCCHHHHHHHHHC-SCEEEEEHHHHHHHHHHHTSCT------------T--CCCEEEEEESSSEEEEEEETTEE T ss_pred CCCHHCCCCHHHHHHHHHC-CCEEEECCHHHHHHHHHHHHCC------------C--CCEEEEEEECCCCCCEEEEECCE T ss_conf 4211149946999999879-9999936588988888875358------------8--62699999568876247750644 Q ss_pred CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCH Q ss_conf 88630113567866667661023478999985318986487752222389999999874088864369888998836895 Q gi|254780280|r 163 KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDP 242 (348) Q Consensus 163 ~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~~~~~D~ 242 (348) ..|.+..++|+||+.+.+... .|.|++.+|+|+++|+++|.+.|+... ..........+++++|+ T Consensus 144 ~~g~~~~~ge~g~~~~~~~~~---------~~~~g~~g~le~~~S~~~l~~~~~~~~------~~~~~~~l~~~~~~gd~ 208 (289) T 2aa4_A 144 LTGPGGLAGHIGHTLADPHGP---------VCGCGRTGCVEAIASGRGIAAAAQGEL------AGADAKTIFTRAGQGDE 208 (289) T ss_dssp ECCTTSCCCCGGGSBSCTTSC---------BCTTSCBSBHHHHHSHHHHHHTCCGGG------TTCCHHHHHHHHHTTCH T ss_pred ECCCCCCCCEEEEEEECCCCC---------CCCCCCCCCCHHCCCHHHHHHHHHHHH------CCCCHHHHHHHHHCCCH T ss_conf 415765454546446558998---------577888787000133999999985443------25740567888762787 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEE-ECCCCHHH Q ss_conf 79999999999999999999997489973899656776556772764899998837983788973887999-57872277 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVI-TNPYIAIA 321 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~-~~~~agl~ 321 (348) .|.+++++++++|+..+.+++++++|+ .|||+|+++.. ..++ +.+.+.+..+ . ...+++|..+ .+++++++ T Consensus 209 ~a~~i~~~~~~~la~~i~~l~~~~~p~-~Ivl~G~i~~~-~~~~--~~~~~~l~~~-~---~~~~~~i~~s~~~~~a~~i 280 (289) T 2aa4_A 209 QAQQLIHRSARTLARLIADIKATTDCQ-CVVVGGSVGLA-EGYL--ALVETYLAQE-P---AAFHVDLLAAHYRHDAGLL 280 (289) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCS-EEEEEHHHHTS-TTHH--HHHHHHHTTS-C---GGGCCEEEECSCSSCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEEECHHHCC-HHHH--HHHHHHHHHC-C---CCCCCEEEECCCCCCHHHH T ss_conf 777779999999999999999986989-89997857626-5589--9999999844-5---6789859955889938899 Q ss_pred HHHHHHHCC Q ss_conf 599987380 Q gi|254780280|r 322 GMVSYIKMT 330 (348) Q Consensus 322 GAa~~~r~~ 330 (348) |||.+||+. T Consensus 281 GAa~lA~~~ 289 (289) T 2aa4_A 281 GAALLAQGE 289 (289) T ss_dssp HHHHHHHCC T ss_pred HHHHHHCCC T ss_conf 999987679 No 9 >3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} Probab=100.00 E-value=1.6e-38 Score=254.64 Aligned_cols=293 Identities=14% Similarity=0.097 Sum_probs=198.8 Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHH------HCCCCCCCEEEEEEEEEEECCC--E Q ss_conf 7737999857511899998779980889997438873588999999997------2234565546999730441685--5 Q gi|254780280|r 12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIY------RKISIRLRSAFLAIATPIGDQK--S 83 (348) Q Consensus 12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~------~~~~~~~~~igi~v~Gpv~~~~--~ 83 (348) ...+|+|||||||++++++|. ++++....++|+.. ++.++.++++++ .....++.++||++||||+... . T Consensus 8 ~~~vlgiDIGGT~i~~al~d~-~g~i~~~~~~pt~~-~~~~~~l~~i~~~i~~~~~~~~~~i~gIGia~pG~vd~~~G~v 85 (366) T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQG-GKEIADPVVLPACA-DCLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADYQAGII 85 (366) T ss_dssp CCEEEEEECSSSEEEEEEEET-TEECSCCEEEECCT-TCHHHHHHHHHHHHHHHHTTCSSCCCEEEEECCSSEETTTTEE T ss_pred CCEEEEEEECCCEEEEEEEEC-CCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCEE T ss_conf 988999998731499999908-99599999975898-8999999999999999985478987679999267686899989 Q ss_pred EEECCCCC-C--CCHHH-HHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEE Q ss_conf 64213566-6--69889-99982898558821265432000015865535302434557666752799317620224543 Q gi|254780280|r 84 FTLTNYHW-V--IDPEE-LISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSV 159 (348) Q Consensus 84 ~~~~~~~~-~--~~~~~-l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~ 159 (348) ...+|++| . ++..+ +.+.++ .||.++||++|.+++|.++.............+.+..+..+++++.|||+|.+++ T Consensus 86 ~~~~nl~~~~~~~~l~~~l~~~~g-~pV~i~NDa~aaalgE~~~~~~~~~~~~~~~~G~~~~~~~~~~itiGtGiG~giv 164 (366) T 3mcp_A 86 GDLPNFPSFRGGVALGPFLEDIFG-IPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTGFGAGVV 164 (366) T ss_dssp CCCTTCGGGTTCBCHHHHHHHHHC-SCEEEECHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCCEEEEEEESSSEEEEEE T ss_pred EECCCCHHHHCCCCHHHHHHHHHC-CCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE T ss_conf 827873375459748999999878-8868617488999999874445321100013566667684899986888569999 Q ss_pred ECC--CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH- Q ss_conf 105--88630113567866667661023478999985318986487752222389999999874088864369888998- Q gi|254780280|r 160 IRA--KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIV- 236 (348) Q Consensus 160 ~~~--~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~- 236 (348) +++ ..|.+..+||+||+. +.|+..+|+|+++|+++|.+.|+.+........... ..+++ T Consensus 165 ~~G~l~~G~~g~aGeiGh~~----------------~~~~~~gclE~~~S~~al~~~~~~~~~~~~~~~~~~--i~~l~~ 226 (366) T 3mcp_A 165 IDGELLRGDNAAGGYVWCLR----------------NKKYPEYIVEESVSIRAVMRVYAERSGDAGARTPKE--IFEIAE 226 (366) T ss_dssp ETTEECCCTTSCTTCCTTSB----------------CSSCTTSBGGGTSSHHHHHHHHHHHSSCCSCCCHHH--HHHHHH T ss_pred ECCEEEECCCCCCCEEEEEE----------------CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHH--HHHHHH T ss_conf 99998547998672588886----------------167899762342328899999998508755688778--999999 Q ss_pred -HHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCC-CHHH-HHHHCCEEE Q ss_conf -8368-95799999999999999999999974899738996567765567727648999988379-8378-897388799 Q gi|254780280|r 237 -SKSE-DPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKS-PHKE-LMRQIPTYV 312 (348) Q Consensus 237 -~~~~-D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~-~~~~-~l~~ipv~~ 312 (348) ++.+ |+.|++++++++++||.+++|++++++ +. |||||||+.+...++ +.+++++.++- .++. .+..++..+ T Consensus 227 ~~~~gd~~~A~~i~~~~~~~Lg~~la~l~~l~d-~~-IVigGgi~~~~~~~l--p~l~~~l~~~~~~~~~~~~~~~~~~~ 302 (366) T 3mcp_A 227 GIRPGNREAAIAAFEELGEMAGDALASAITLID-GL-IVIGGGLSGASKYIL--PVLLKEMNAQTGMMDGARFGRLQKEV 302 (366) T ss_dssp TSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHC-SE-EEEESGGGGGHHHHH--HHHHHHHHHHTTCC--------CCEE T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CE-EEEECHHHCCHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 987099299999999999999999999999759-97-999754878807789--99999999853667766543344444 Q ss_pred E-ECCCCH----HHHHHHHHHC Q ss_conf 9-578722----7759998738 Q gi|254780280|r 313 I-TNPYIA----IAGMVSYIKM 329 (348) Q Consensus 313 ~-~~~~ag----l~GAa~~~r~ 329 (348) . ..++.+ ..|||.++.- T Consensus 303 ~~~~~~~~~~~~a~gaa~~v~~ 324 (366) T 3mcp_A 303 YDLDEEKSFAGFARGEAVEVLV 324 (366) T ss_dssp EETTSHHHHHHHHHTTCEEEEC T ss_pred CCCCCHHHHHHHHCCCCEEEEC T ss_conf 0245653444443367519961 No 10 >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Probab=100.00 E-value=9e-36 Score=237.70 Aligned_cols=290 Identities=14% Similarity=0.088 Sum_probs=204.9 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECC--CCCCCHH----HHHHHHHHHCC--CCCCCEEEEEEEEEEECC Q ss_conf 667737999857511899998779980889997438--8735889----99999997223--456554699973044168 Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQT--SDYENLE----HAIQEVIYRKI--SIRLRSAFLAIATPIGDQ 81 (348) Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t--~~~~~~~----~~i~~~l~~~~--~~~~~~igi~v~Gpv~~~ 81 (348) |....++++|||+|+++++++|.. +++....+.++ .+.+.+. +.+.+++.+.. ..++.++||++||+|+.. T Consensus 82 ~~~~~~igv~i~~~~i~~~l~dl~-g~ii~~~~~~~~~~~~~~~l~~i~~~i~~~~~~~~~~~~~i~gigia~pG~vd~~ 160 (406) T 1z6r_A 82 TEAWHYLSLRISRGEIFLALRDLS-SKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE 160 (406) T ss_dssp CTTCEEEEEEEETTEEEEEEEETT-CCEEEEEEEECCSSCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEETT T ss_pred CCCCEEEEEEECCCEEEEEEECCC-CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC T ss_conf 886689999988988999998699-9889889984367986999999999999999965775356469985125787788 Q ss_pred CEEE--ECCC-CCC-CCHHH-HHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEE Q ss_conf 5564--2135-666-69889-99982898558821265432000015865535302434557666752799317620224 Q gi|254780280|r 82 KSFT--LTNY-HWV-IDPEE-LISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGI 156 (348) Q Consensus 82 ~~~~--~~~~-~~~-~~~~~-l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~ 156 (348) .... .++. .|. ++..+ +.+.++ .||.++||++|.+++|.+++. ......++++..|+|+|. T Consensus 161 ~g~v~~~~~~~~~~~~~l~~~l~~~~~-~pv~v~ND~~a~a~aE~~~g~-------------~~~~~~~~~i~~g~GiG~ 226 (406) T 1z6r_A 161 NGIVHRMPFYEDVKEMPLGEALEQHTG-VPVYIQHDISAWTMAEALFGA-------------SRGARDVIQVVIDHNVGA 226 (406) T ss_dssp TTEEEECTTCTTCSSBCHHHHHHHHHS-SCEEEEEHHHHHHHHHHHHST-------------TTTCSSEEEEEESSSEEE T ss_pred CCEEECCCCCCCCCCCCHHHHHHHHHC-CCEEECCCHHHHHHHHHHHCC-------------CCCCCCEEEEEECCCCCE T ss_conf 888972788766468857999999878-884445625689999998488-------------778876023320368823 Q ss_pred EEEECC--CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCC--CCCCCH Q ss_conf 543105--8863011356786666766102347899998531898648775222238999999987408886--436988 Q gi|254780280|r 157 SSVIRA--KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFES--NKVLSS 232 (348) Q Consensus 157 ~~~~~~--~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~--~~~~~~ 232 (348) ++++++ ..|.+..++|+||+.+.|... .|.||+.+|+|+++|.++|.+.|........... ...... T Consensus 227 gii~~g~~~~G~~g~ageiGh~~v~~~g~---------~c~cG~~gclE~~~s~~al~~~~~~~~~~~~~~~l~~~~~~~ 297 (406) T 1z6r_A 227 GVITDGHLLHAGSSSLVEIGHTQVDPYGK---------RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTV 297 (406) T ss_dssp EEEETTEETTTTSSCCBCGGGSBSCTTSC---------BCTTSCBSBTHHHHSHHHHHHHHHHHHTTCTTCGGGSSCCCH T ss_pred EEEECCEEEECCCCCCCEECCEEECCCCC---------CCCCCCCCCHHHEECHHHHHHHHHHHHCCCCCHHHCCCCCCH T ss_conf 68789947767888642312316668887---------467888773153233999999999863145302321555667 Q ss_pred HH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCE Q ss_conf 89--9883689579999999999999999999997489973899656776556772764899998837983788973887 Q gi|254780280|r 233 KD--IVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPT 310 (348) Q Consensus 233 ~~--~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv 310 (348) .+ .+++.+|+.|.+++++++.+||.+++|++++|+|+. |||||+++.....++ +.+++.+.++ .+..+.+.++| T Consensus 298 ~~l~~~~~~gd~~a~~i~~~~~~~l~~~l~nl~~~ldP~~-IvlgG~~~~~~~~~~--~~l~~~i~~~-~~~~~~~~~~i 373 (406) T 1z6r_A 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQK-ILIGSPLSKAADILF--PVISDSIRQQ-ALPAYSQHISV 373 (406) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSE-EEEESGGGGGHHHHH--HHHHHHHHHH-SCHHHHTTCEE T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECHHHHCHHHHH--HHHHHHHHHH-CCCCCCCCCEE T ss_conf 9999999869998999999999999999999999879898-999794783738899--9999999985-24024789779 Q ss_pred EEE-ECCCCHHHHHHHHH Q ss_conf 999-57872277599987 Q gi|254780280|r 311 YVI-TNPYIAIAGMVSYI 327 (348) Q Consensus 311 ~~~-~~~~agl~GAa~~~ 327 (348) ..+ ..++++++|||.+. T Consensus 374 ~~s~~~~~a~~~GAAll~ 391 (406) T 1z6r_A 374 ESTQFSNQGTMAGAALVK 391 (406) T ss_dssp EECSCCCCTTTTHHHHHH T ss_pred EECCCCCHHHHHHHHHHH T ss_conf 989979819999999999 No 11 >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=100.00 E-value=3.7e-35 Score=233.92 Aligned_cols=273 Identities=13% Similarity=0.078 Sum_probs=194.3 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCC---HHHHHHHHH----HH--CCCCCCCEEEEEEEEEEEC Q ss_conf 66773799985751189999877998088999743887358---899999999----72--2345655469997304416 Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYEN---LEHAIQEVI----YR--KISIRLRSAFLAIATPIGD 80 (348) Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~---~~~~i~~~l----~~--~~~~~~~~igi~v~Gpv~~ 80 (348) |....+|+||||+|+++++++|.. +++....+.++....+ +.+.+.+.+ .. ....++.++||++||+|+. T Consensus 84 ~~~~~~igidig~~~i~~~l~d~~-g~vi~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgia~pG~vd~ 162 (380) T 2hoe_A 84 PNCAYVLGIEVTRDEIAACLIDAS-MNILAHEAHPLPSQSDREETLNVMYRIIDRAKDMMEKLGSKLSALTVAAPGPIDT 162 (380) T ss_dssp GGGCEEEEEEECSSEEEEEEEETT-CCEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEESSCEET T ss_pred CCCCEEEEEEECCCEEEEEEECCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEC T ss_conf 980789999999998999999499-9899999875798888899999999999999998542178646999996864607 Q ss_pred CC--EEEECCCCCC-CCHHH-HHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEE Q ss_conf 85--5642135666-69889-99982898558821265432000015865535302434557666752799317620224 Q gi|254780280|r 81 QK--SFTLTNYHWV-IDPEE-LISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGI 156 (348) Q Consensus 81 ~~--~~~~~~~~~~-~~~~~-l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~ 156 (348) .. ....++..|. ++..+ +.+.++ .||.++||+++.+++|.+++ . ....++++..|+|+|. T Consensus 163 ~~g~v~~~~~~~w~~~~l~~~l~~~~~-~pv~v~NDa~~~alaE~~~g-------------~--~~~~~~~i~~g~GiG~ 226 (380) T 2hoe_A 163 ERGIIIDPRNFPLSQIPLANLLKEKYG-IEVWVENDADMGAVGEKWYT-------------K--RDDSFAWILTGKGIGA 226 (380) T ss_dssp TTTEECCCSSCTTBTSCHHHHHHHHHC-SEEEEEEHHHHHHHHHHHHT-------------T--CCSCEEEEEESSSCEE T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHC-CCEEEEECCCHHHHHHHHHC-------------C--CCCEEEEEEECCCCCC T ss_conf 857594357888433547999999879-98899827454899998743-------------5--8824999995378850 Q ss_pred EEEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHH Q ss_conf 5431058--86301135678666676610234789999853189864877522223899999998740888643698889 Q gi|254780280|r 157 SSVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKD 234 (348) Q Consensus 157 ~~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~ 234 (348) ++++++. .|.+..+||+||+++ |.|+..+|+|+++|.+++.+.+.... ..... T Consensus 227 gii~~G~l~~G~~g~aGEiGh~~v---------------~~~~~~~c~e~~~s~~~i~~~~~~~~----------~~~l~ 281 (380) T 2hoe_A 227 GIIIDGELYRGENGYAGEIGYTRV---------------FNGNEYVFLEDVCNENVVLKHVLSMG----------FSSLA 281 (380) T ss_dssp EEEETTEECCCSSSCCCCGGGCEE---------------ECSSSEEEHHHHHCHHHHHHHHHHHC----------CC-TT T ss_pred EEEECCEEECCCCCCCCEEEEEEE---------------EECCCCCHHHHHCHHHHHHHHHHHCC----------CCHHH T ss_conf 598899482488775524567999---------------61465345653430999999998568----------53036 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEE- Q ss_conf 9883689579999999999999999999997489973899656776556772764899998837983788973887999- Q gi|254780280|r 235 IVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVI- 313 (348) Q Consensus 235 ~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~- 313 (348) .+++.+|+.|.+++++++++||.+++|++++|+|+. |||||+++.....|+. .+++.+.++... ...++|..+ T Consensus 282 ~~~~~gd~~a~~~~~~~~~~l~~~i~nl~~~ldPe~-IvlgG~~~~~~~~~~~--~i~~~~~~~~~~---~~~~~I~~s~ 355 (380) T 2hoe_A 282 EARDSGDVRVKEYFDDIARYFSIGLLNLIHLFGISK-IVIGGFFKELGENFLK--KIKIEVETHLLY---KHSVDMSFSK 355 (380) T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEGGGGGHHHHHH--HHHHHHHHHCSS---SCCCEEEECC T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECHHHHCHHHHHH--HHHHHHHHHCCC---CCCCEEEECC T ss_conf 651268988999999999999999999999989998-9990936868288999--999999971777---7898699888 Q ss_pred ECCCCHHHHHHHHHHCC Q ss_conf 57872277599987380 Q gi|254780280|r 314 TNPYIAIAGMVSYIKMT 330 (348) Q Consensus 314 ~~~~agl~GAa~~~r~~ 330 (348) .+++++++|||.++.++ T Consensus 356 l~~~~~~~GAA~~al~~ 372 (380) T 2hoe_A 356 VQEPVIAFGAAVHALEN 372 (380) T ss_dssp CCSCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHH T ss_conf 89839999999999999 No 12 >3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Probab=100.00 E-value=3e-36 Score=240.62 Aligned_cols=278 Identities=17% Similarity=0.179 Sum_probs=187.6 Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEEEECC--CCCCCHHHHHHHHHHHC---CCCCCCEEEEEEEEEEECCC--EE Q ss_conf 7737999857511899998779980889997438--87358899999999722---34565546999730441685--56 Q gi|254780280|r 12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQT--SDYENLEHAIQEVIYRK---ISIRLRSAFLAIATPIGDQK--SF 84 (348) Q Consensus 12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t--~~~~~~~~~i~~~l~~~---~~~~~~~igi~v~Gpv~~~~--~~ 84 (348) .-.|++||||||++|++++|.. +++....+.++ .+++++.+.+.+.+.+. ...++.++|||+||+|+... .. T Consensus 6 ~~~v~GIDiGgt~i~~~l~d~~-g~i~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~i~gIgia~pG~vd~~~g~v~ 84 (310) T 3htv_A 6 HNVVAGVDMGATHIRFCLRTAE-GETLHCEKKRTAEVIAPGLVSGIGEMIDEQLRRFNARCHGLVMGFPALVSKDKRTII 84 (310) T ss_dssp EEEEEEEEECSSEEEEEEEETT-SCEEEEEEEEHHHHHTTCHHHHHHHHHHHHHHHHTEEEEEEEEEESSCBCTTSSCBC T ss_pred CCEEEEEEECCCEEEEEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCEEE T ss_conf 9899999976667999999299-989999996188878899999999999999987599730799982630867998499 Q ss_pred EECCCCC---C-CCH-HHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEE Q ss_conf 4213566---6-698-8999982898558821265432000015865535302434557666752799317620224543 Q gi|254780280|r 85 TLTNYHW---V-IDP-EELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSV 159 (348) Q Consensus 85 ~~~~~~~---~-~~~-~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~ 159 (348) ..++.+| . ++. ..+.+.++ .||.++||++|.++++.+. .......++++..|||+|.+++ T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~-~pv~i~ND~~aaa~~e~~~--------------~~~~~~~~~~i~~gtGiG~gii 149 (310) T 3htv_A 85 STPNLPLTAADLYDLADKLENTLN-CPVEFSRDVNLQLSWDVVE--------------NRLTQQLVLAAYLGTGMGFAVW 149 (310) T ss_dssp SCCSSSCCHHHHTTHHHHHHHHHT-SCEEEEEHHHHHHHHHHHH--------------TTCTTSCEEEEEESSSEEEEEE T ss_pred ECCCCCCCCCCCCCHHHHHHHHHC-CCEEEECCHHHHHHHHHHH--------------CCCCCCEEEEEEECCCCCCCCC T ss_conf 568778644447767999878629-8579955377777766540--------------3454665999984671355413 Q ss_pred ECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHH- Q ss_conf 1058--8630113567866667661023478999985318986487752222389999999874088864369888998- Q gi|254780280|r 160 IRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIV- 236 (348) Q Consensus 160 ~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~- 236 (348) .++. .|.+..+||+||+++.+... .|.|+..+|+|+++|+++|.+.|+.. .......++. T Consensus 150 ~~g~i~~G~~g~aGEiGh~~~~~~~~---------~~~cg~~gc~e~~~S~~~l~~~~~~~--------~~~~~~~~~~~ 212 (310) T 3htv_A 150 MNGAPWTGAHGVAGELGHIPLGDMTQ---------HCACGNPGCLETNCSGMALRRWYEQQ--------PRNYPLRDLFV 212 (310) T ss_dssp ETTEEECCSSSCCCC------------------------------CCSSSHHHHHHHHTTS--------CCSSCGGGHHH T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCC---------CCCCCCCHHHHHHCCHHHHHHHHHHC--------CCCCCHHHHHH T ss_conf 47864558765445454023579987---------45677511445532599999999753--------12352899997 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHH-HHHCCEEEE-E Q ss_conf 83689579999999999999999999997489973899656776556772764899998837983788-973887999-5 Q gi|254780280|r 237 SKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKEL-MRQIPTYVI-T 314 (348) Q Consensus 237 ~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~-l~~ipv~~~-~ 314 (348) ....|+ +++.+.+++++.++|++++|+|+. |||||+++.. ..++ .+.+.+.+.+.. +..+ -+.++|..+ . T Consensus 213 ~~~~~~----~~~~~~~~~~~~ia~li~~ldp~~-IVigG~i~~~-~~~~-~~~l~~~~~~~~-~~~~~~~~~~i~~s~~ 284 (310) T 3htv_A 213 HAENAP----FVQSLLENAARAIATSINLFDPDA-VILGGGVMDM-PAFP-RETLVAMTQKYL-RRPLPHQVVRFIAASS 284 (310) T ss_dssp HHTTCH----HHHHHHHHHHHHHHHHHHHHCCSE-EEEECTTTTS-TTCC-HHHHHHHHHHTS-CTTTTTTTCEEEECCC T ss_pred HHHCCC----HHHHHHHHHHHHHHHHHHHCCCCE-EEEECHHHCC-HHHH-HHHHHHHHHHHH-CCCCCCCCCEEEECCC T ss_conf 763360----554567789999998987518988-9980825506-4678-999999999985-2235767887998885 Q ss_pred CCCCHHHHHHHHHHCC Q ss_conf 7872277599987380 Q gi|254780280|r 315 NPYIAIAGMVSYIKMT 330 (348) Q Consensus 315 ~~~agl~GAa~~~r~~ 330 (348) +++++++|||.++.++ T Consensus 285 ~~~~~~~GAA~la~~~ 300 (310) T 3htv_A 285 SDFNGAQGAAILAHQR 300 (310) T ss_dssp CTTHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 7758899999999998 No 13 >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Probab=100.00 E-value=3.7e-34 Score=227.75 Aligned_cols=291 Identities=19% Similarity=0.127 Sum_probs=199.0 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCC--CCCCHHHHHHHHHHHC--CCCCCCEEEEEEEEEEECCCEEE Q ss_conf 6677379998575118999987799808899974388--7358899999999722--34565546999730441685564 Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTS--DYENLEHAIQEVIYRK--ISIRLRSAFLAIATPIGDQKSFT 85 (348) Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~--~~~~~~~~i~~~l~~~--~~~~~~~igi~v~Gpv~~~~~~~ 85 (348) |.+|= |+|||||||||++++|.. +++..+.+.||. +++.+.+.+.+.+++. .......+||++||+++...... T Consensus 22 ~~~~y-lGiDiGGT~i~~al~d~~-G~il~~~~~~t~~~~~~~~l~~i~~~i~~~~~~~~~~~~igi~~~G~vd~~~g~i 99 (327) T 2ap1_A 22 SNAMY-YGFDIGGTKIALGVFDST-RRLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTL 99 (327) T ss_dssp -CCEE-EEEEECSSEEEEEEEETT-CCEEEEEEEECCCSCHHHHHHHHHHHHHHHHHHHTSCCEEEEEESSBSCCTTSCC T ss_pred CCCEE-EEEEECCCEEEEEEECCC-CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEE T ss_conf 89579-999967224999999199-9899999986999999999999999999998863887289999788654678648 Q ss_pred --ECCCCCCC-CH-HHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEC Q ss_conf --21356666-98-899998289855882126543200001586553530243455766675279931762022454310 Q gi|254780280|r 86 --LTNYHWVI-DP-EELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIR 161 (348) Q Consensus 86 --~~~~~~~~-~~-~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~ 161 (348) .+...|.. +. .+|.+.++. ||.++||.++.+++|.+++. ......++++..|+|+|.+.+.+ T Consensus 100 ~~~~~~~~~~~~l~~~L~~~~~~-~v~~~nD~~~~Al~e~~~g~-------------~~~~~~~~~~~ig~gig~g~~~~ 165 (327) T 2ap1_A 100 YAANVPAASGKPLRADLSARLDR-DVRLDNDANCFALSEAWDDE-------------FTQYPLVMGLILGTGVGGGLVLN 165 (327) T ss_dssp BCTTCTTTTTSCHHHHHHHHHTS-CEEEEEHHHHHHHHHHTSTT-------------GGGCSEEEEEEESSSEEEEEEET T ss_pred ECCCCCCCCCCHHHHHHHHHHCC-CEEEECCCHHHHHHHHHCCC-------------CCCCCEEEEEEECCCCCCEEEEC T ss_conf 34667332466099999998799-87982475187888876177-------------65235189999646422137745 Q ss_pred CC--CCCEECCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 58--8630113567866667661023478-99998531898648775222238999999987408886436988899883 Q gi|254780280|r 162 AK--DSWIPISCEGGHMDIGPSTQRDYEI-FPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSK 238 (348) Q Consensus 162 ~~--~g~~~~agE~Gh~~~~~~~~~~~~~-~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~~~ 238 (348) +. .|.+..++|+||+.+.+........ .....|.|+..+|+|.++|...+.+.+..... ..........+++ T Consensus 166 g~~~~G~~g~ageig~~~v~~~g~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~ 240 (327) T 2ap1_A 166 GKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYD-----QSLQAPEIIALWE 240 (327) T ss_dssp TEEECCTTSCTTCGGGSBCCHHHHHHHCTTSCCCBCTTSCBSBTHHHHSHHHHHHHHHHHHC-----CCCCHHHHHHHHH T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCC-----CCCCHHHHHHHHH T ss_conf 74355887626465578866887444466666543345566751432135899999875225-----5443244445776 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCH--HHHHHHCCEEEE-EC Q ss_conf 689579999999999999999999997489973899656776556772764899998837983--788973887999-57 Q gi|254780280|r 239 SEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPH--KELMRQIPTYVI-TN 315 (348) Q Consensus 239 ~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~--~~~l~~ipv~~~-~~ 315 (348) .+|+.|.+.+++++++|+.+++|++++|+|+. |||||+++.. .+++ +...++.+. .+....++|..+ ++ T Consensus 241 ~gd~~a~~~i~~~~~~l~~~ianl~~l~dP~~-IvlGG~v~~~-~~~~------~~i~~~~~~~~~~~~~~~~I~~a~lg 312 (327) T 2ap1_A 241 QGDEQAHAHVERYLDLLAVCLGNILTIVDPDL-LVIGGGLSNF-TAIT------TQLAERLPRHLLPVARAPRIERARHG 312 (327) T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSE-EEEESGGGGS-THHH------HSSGGGSGGGSCTTCCCCEEEECSCT T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECHHHCC-HHHH------HHHHHHHHHHCCCCCCCCEEEECCCC T ss_conf 07756679999999999999999999749998-9992703253-8899------99999999861465789989989978 Q ss_pred CCCHHHHHHHHHHC Q ss_conf 87227759998738 Q gi|254780280|r 316 PYIAIAGMVSYIKM 329 (348) Q Consensus 316 ~~agl~GAa~~~r~ 329 (348) ++++++|||.++-+ T Consensus 313 ~~a~l~GAa~lAl~ 326 (327) T 2ap1_A 313 DAGGMRGAAFLHLT 326 (327) T ss_dssp TTHHHHHHHHTTSC T ss_pred CHHHHHHHHHHHHC T ss_conf 85999999999836 No 14 >3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} Probab=100.00 E-value=2.2e-32 Score=216.73 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=157.4 Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEE-ECCCCC Q ss_conf 7379998575118999987799808899974388735889999999972234565546999730441685564-213566 Q gi|254780280|r 13 FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFT-LTNYHW 91 (348) Q Consensus 13 ~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~-~~~~~~ 91 (348) .++|++||||||+|++++|.. +++.. ++....+.++.++.+.+.......+++||++||||+.+.... .+++.| T Consensus 6 ~~vlgiDIGGT~i~~~l~d~~-~~~~~----~t~~~~~~~~~~~~i~~~i~~~~~~~igi~~pG~vd~~~~i~~~~~~~~ 80 (226) T 3lm2_A 6 QTVLAIDIGGSHVKIGLSTDG-EERKV----ESGKTMTGPEMVAAVTAMAKDMTYDVIAMGYPGPVVHNKPLREPVNLGE 80 (226) T ss_dssp CCEEEEEECSSEEEEEETTTC-CEEEE----ECCTTCCHHHHHHHHHHHTTTCCCSEEEEEESSCEETTEECSCCTTSCS T ss_pred CEEEEEEECCCEEEEEEEECC-CCEEE----ECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCC T ss_conf 859999978856999999799-86899----6589999799999999999750323518951688777732896057663 Q ss_pred CCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCEECCC Q ss_conf 66988999982898558821265432000015865535302434557666752799317620224543105886301135 Q gi|254780280|r 92 VIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISC 171 (348) Q Consensus 92 ~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~g~~~~ag 171 (348) ......+.+.++ .||.++||++|++++|+++ ..+++++.|||+|.+.+.++. ..++ T Consensus 81 ~~~~~~l~~~~g-~pv~v~NDanaaalgE~~~-------------------~~~~~i~~GtGiG~gii~~G~----l~aG 136 (226) T 3lm2_A 81 GWVGYDYEGAFG-RPVRIVNDALMQAIGSYNG-------------------GRMLFLGLGTGLGAAMIVENV----AQPM 136 (226) T ss_dssp CCTTCCHHHHHT-SCEEEEEHHHHHHHHHCCS-------------------SEEEEEEESSSEEEEEEETTE----EEEE T ss_pred CHHHHHHHHHHC-CCEEEECHHHHHHHHHHHC-------------------CCCCEEEEEEEEEEEEEECCE----EECC T ss_conf 001357998619-9989924799988534234-------------------777659972899988999998----9536 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH Q ss_conf 67866667661023478999985318986487752222389999999874088864369888998836895799999999 Q gi|254780280|r 172 EGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAINLF 251 (348) Q Consensus 172 E~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~~~~~D~~A~~~~~~~ 251 (348) |.||++ |+..+|+|.++|++++.+. .+++| T Consensus 137 E~Gh~~------------------~~~~~~~E~~~s~~~~~~~--------------------------------~~~~~ 166 (226) T 3lm2_A 137 EIAHLP------------------YRKGKTYEHYVSEAYREKK--------------------------------GNAKW 166 (226) T ss_dssp CCTTSE------------------EETTEEHHHHTCHHHHHHH--------------------------------CHHHH T ss_pred CCCCEE------------------CCCCCCHHHHHCCCCCHHH--------------------------------HHHHH T ss_conf 454122------------------6999878887276751345--------------------------------79999 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHHHHHHHHCCC Q ss_conf 99999999999997489973899656776556772764899998837983788973887999578722775999873800 Q gi|254780280|r 252 CEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAGMVSYIKMTD 331 (348) Q Consensus 252 ~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~GAa~~~r~~~ 331 (348) +++|++++++++++|+|+. |||||||++++..+.. .++ ...++++++||+.+.+..| T Consensus 167 ~~~l~~~l~~l~~~~dPe~-iViGGGis~~~~~~~~---------------------~v~-~~~n~a~~~g~a~lw~~~~ 223 (226) T 3lm2_A 167 QKRVQDVVERLSAALEPDE-VVIGGGNVERLENLPP---------------------KCR-RGDNAMAFEGGFRLWKNAD 223 (226) T ss_dssp HHHHHHHHHHHHHHHCCSE-EEEESGGGGGCCCCCT---------------------TEE-ECCTTHHHHHHHHHHHCTT T ss_pred HHHHHHHHHHHHHHHCCCE-EEECCHHHHHHHHHCH---------------------HHE-EECCCHHHHHHHHHCCCCC T ss_conf 9999999999999859898-9988957750334175---------------------448-9377368899998665754 Q ss_pred C Q ss_conf 1 Q gi|254780280|r 332 C 332 (348) Q Consensus 332 ~ 332 (348) . T Consensus 224 ~ 224 (226) T 3lm2_A 224 L 224 (226) T ss_dssp C T ss_pred C T ss_conf 3 No 15 >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 Probab=100.00 E-value=8.7e-32 Score=213.10 Aligned_cols=239 Identities=20% Similarity=0.239 Sum_probs=162.1 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEE-EEEEECCCCCCC---HHHHHHHHHHHCC-----CCCCCEEEEEEEEEEEC Q ss_conf 66773799985751189999877998088-999743887358---8999999997223-----45655469997304416 Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPE-FCCTVQTSDYEN---LEHAIQEVIYRKI-----SIRLRSAFLAIATPIGD 80 (348) Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~-~~~~~~t~~~~~---~~~~i~~~l~~~~-----~~~~~~igi~v~Gpv~~ 80 (348) ....+||+|||||||||++++|.+++++. .+.+.||....+ +.+.+.+++.+.. ...+.++||++||+|+. T Consensus 9 ~~~~~viGiDiGGT~i~~~l~d~~~~~i~~~~~~~~t~~~~~~~~i~~~i~~~i~~l~~~~~~~~~~~gIGi~~PG~vd~ 88 (267) T 1woq_A 9 HKNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEAPAAGSPVGVTFPGIIQH 88 (267) T ss_dssp --CCCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHTSTTCCCTTCCEEEEESSCEET T ss_pred CCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEE T ss_conf 89998999998776599999989999899999996789999999999999999999875026776452132268870554 Q ss_pred CCEEEECC--CCCC-CCHHH-HHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC-CCCEEEECCCCEEE Q ss_conf 85564213--5666-69889-99982898558821265432000015865535302434557666-75279931762022 Q gi|254780280|r 81 QKSFTLTN--YHWV-IDPEE-LISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSL-FSSRVIVGPGTGLG 155 (348) Q Consensus 81 ~~~~~~~~--~~~~-~~~~~-l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~~ig~GtG~g 155 (348) +.....++ ..|. ++..+ +.+.++ .||.++||++|++++|.+++.. .. ...++++..|||+| T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~~~~-~pV~v~NDanaaAlaE~~~G~~-------------~~~~~~~~~~~~gtGiG 154 (267) T 1woq_A 89 GVVHSAANVDKSWLNTDIDALLTARLG-RPVEVINDADAAGLAEARYGAG-------------AGVKGTVLVITLGTGIG 154 (267) T ss_dssp TEECCCTTSCGGGTTCBHHHHHHHHHT-SCEEEEEHHHHHHHHHHHHSTT-------------TTCCSEEEEEEESSSEE T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHC-CCEEEECCCCHHHHHHHHHCCC-------------CCCCCCEEEEEECCEEE T ss_conf 005651576534358857899999879-9989812421368888651846-------------58878379999788785 Q ss_pred EEEEECCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHH Q ss_conf 45431058863011356786666766102347899998531898648775222238999999987408886436988899 Q gi|254780280|r 156 ISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDI 235 (348) Q Consensus 156 ~~~~~~~~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~ 235 (348) .+.++++ ....+||+||+++.+.. .|.+++..+..+ T Consensus 155 ~g~v~~G---~~~~gGEiGH~~v~~~~-------------------~~~~~~~~~~~~---------------------- 190 (267) T 1woq_A 155 SAFIFDG---KLVPNAELGHLEIDGHD-------------------AETKASAVARER---------------------- 190 (267) T ss_dssp EEEEETT---EEETTCCGGGCEETTEE-------------------HHHHHSHHHHHH---------------------- T ss_pred CCCCCCC---CEEECCEEEEEEECCCC-------------------HHHHHHHHHHHH---------------------- T ss_conf 0311589---61605762588978996-------------------132453767501---------------------- Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEE-E Q ss_conf 883689579999999999999999999997489973899656776556772764899998837983788973887999-5 Q gi|254780280|r 236 VSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVI-T 314 (348) Q Consensus 236 ~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~-~ 314 (348) |.. .+++++++|+++++|++++++|+. ||||||++.....|+.. .+ ++++|..+ + T Consensus 191 -----~~~---~~~~~~~~l~~~la~l~~~~dPe~-IvlGGgi~~~~~~~~~~----------l~-----~~~~I~~s~l 246 (267) T 1woq_A 191 -----DGL---SWDEYSVLLQRYFSHVEFLFSPEL-FIVGGGISKRADEYLPN----------LR-----LRTPIVPAVL 246 (267) T ss_dssp -----TTC---CHHHHHHHHHHHHHHHHHHHCCSE-EEEESGGGGGGGGTGGG----------CC-----CSSCEEECSC T ss_pred -----CCH---HHHHHHHHHHHHHHHHHHHHCCCE-EEECCHHHHHHHHHHHH----------HH-----CCCCEEECCC T ss_conf -----222---167999999999999999868999-99979899849999876----------52-----3894997786 Q ss_pred CCCCHHHHHHHHHHCC Q ss_conf 7872277599987380 Q gi|254780280|r 315 NPYIAIAGMVSYIKMT 330 (348) Q Consensus 315 ~~~agl~GAa~~~r~~ 330 (348) +++++++|||..+.+. T Consensus 247 g~~A~~~GAA~~~~~~ 262 (267) T 1woq_A 247 RNEAGIVGAAIEIALQ 262 (267) T ss_dssp STTHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHH T ss_conf 8849999999999985 No 16 >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, ribonuclease H fold, sugar kinase/HSP70/actin superfamily, domain rotation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Probab=99.96 E-value=1.1e-27 Score=187.69 Aligned_cols=297 Identities=11% Similarity=-0.069 Sum_probs=162.0 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCC--CCHH-------HHHHHHHHHCC---CCCCCEEEEEEEEE Q ss_conf 667737999857511899998779980889997438873--5889-------99999997223---45655469997304 Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDY--ENLE-------HAIQEVIYRKI---SIRLRSAFLAIATP 77 (348) Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~--~~~~-------~~i~~~l~~~~---~~~~~~igi~v~Gp 77 (348) +|+.=.|+||+||||+|++++|. +++++.+.+.++..+ .+.+ +.+++++++.. ...+.+++++.+|. T Consensus 3 ~m~~~~iGIDiGGTk~~~~l~d~-~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~~~~~i~~ig~~~~g~ 81 (347) T 2ch5_A 3 FMAAIYGGVEGGGTRSEVLLVSE-DGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGG 81 (347) T ss_dssp SSSCEEEEEEECTTCEEEEEEET-TSCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTT T ss_pred CCCCEEEEEECCCHHEEEEEECC-CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC T ss_conf 64878999990612128889949-99999999946899665899999999999999999974999776444433423665 Q ss_pred EECCCEEEECCCCCCCCHHHHHH--HHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEE Q ss_conf 41685564213566669889999--8289855882126543200001586553530243455766675279931762022 Q gi|254780280|r 78 IGDQKSFTLTNYHWVIDPEELIS--RMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLG 155 (348) Q Consensus 78 v~~~~~~~~~~~~~~~~~~~l~~--~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g 155 (348) +....... ....... .....+|.+.||.++.++++... . .+.+..|||.+ T Consensus 82 ~~~~~~~~--------~~~~~~~~~~~~~~~v~i~nDa~a~~~~~~~~------------------~--~~~~~~gtg~~ 133 (347) T 2ch5_A 82 DQEDAGRI--------LIEELRDRFPYLSESYLITTDAAGSIATATPD------------------G--GVVLISGTGSN 133 (347) T ss_dssp TCHHHHHH--------HHHHHHHHCTTSBSCEEEEEHHHHHHHHHCSS------------------C--EEEEEESSSEE T ss_pred CCCCCCEE--------CCCHHHHHCCCCCCEEEEECHHHHHHHHHCCC------------------C--CEEEEECCCEE T ss_conf 57531211--------14123343257787199956699988764059------------------9--48999702589 Q ss_pred EEEEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHH------HHHHHHCCCCCC Q ss_conf 45431058--8630113567866667661023478999985318986487752222389999------999874088864 Q gi|254780280|r 156 ISSVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIY------KALCIADGFESN 227 (348) Q Consensus 156 ~~~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y------~~l~~~~~~~~~ 227 (348) ........ .+...+..+.||..................+.|....|.+...+...+...+ ..+......... T Consensus 134 ~~~~~~~~~~~~~~g~g~~~G~~~~~~~ig~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (347) T 2ch5_A 134 CRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK 213 (347) T ss_dssp EEEECTTSCEEEEECCCTTTCCTTSHHHHHHHHHHHHHHHHHTSSCCSSCCHHHHHHHHHHHTCSSHHHHHTTTTTTCCH T ss_pred EEEEECCCCEEEECCCCEEECCCCCCCCHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH T ss_conf 99997697169954753113345766400012202322147887665411689999999760899779999998616783 Q ss_pred CC----CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------EEEECHHHHHHHHHHCCHHHHHHHH Q ss_conf 36----988899883689579999999999999999999997489973-------8996567765567727648999988 Q gi|254780280|r 228 KV----LSSKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGG-------VYISGGIPYKIIDLLRNSSFRESFE 296 (348) Q Consensus 228 ~~----~~~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~-------IvlgGGi~~~~~~~l~~~~f~~~f~ 296 (348) .. ......++++||+.|++++++++++||+.+++++++++|+.. ||||||++.+...++ +.|++.+. T Consensus 214 ~~~a~~~~~v~~~A~~GD~~A~~ii~~~~~~Lg~~ia~~~~~ldP~~~~~~~~~~VVlgGgv~~~~~~l~--~~~~~~l~ 291 (347) T 2ch5_A 214 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLK--EGFLLALT 291 (347) T ss_dssp HHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHGGGSCGGGGCSTTCEEEEEESGGGGGHHHHH--HHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCHHHCCHHHH--HHHHHHHH T ss_conf 4566650444788877899999999999999999999999851936434788854999860574887899--99999998 Q ss_pred HCCCHHHHHHHC-CEEEEECCCCHHHHHHHHHHCCCCCCCCCC Q ss_conf 379837889738-879995787227759998738001244457 Q gi|254780280|r 297 NKSPHKELMRQI-PTYVITNPYIAIAGMVSYIKMTDCFNLFIS 338 (348) Q Consensus 297 ~~~~~~~~l~~i-pv~~~~~~~agl~GAa~~~r~~~~~~~~~~ 338 (348) ++... ...... .++++..++++++||+.+++++....++.+ T Consensus 292 ~~~~~-~~~~~~~~v~~~~~~~~~~~GAa~LA~~~~~~~l~~~ 333 (347) T 2ch5_A 292 QGREI-QAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMD 333 (347) T ss_dssp HHC----CCCSCSEEEEEEESSCTHHHHHHHHHHTTTCCCCCC T ss_pred HHCCC-CCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 63221-1025677069964898759999999998659977887 No 17 >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Probab=99.95 E-value=1.3e-27 Score=187.31 Aligned_cols=276 Identities=13% Similarity=-0.002 Sum_probs=165.1 Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCC-----CCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEE Q ss_conf 7737999857511899998779980889997438873-----58899999999722345655469997304416855642 Q gi|254780280|r 12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDY-----ENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTL 86 (348) Q Consensus 12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~-----~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~ 86 (348) +|-+|+|||||||++++++|.+ ++++...+.++... +.+.+.|.+.+++........++++++||.... T Consensus 1 mm~~iGIDiGgT~~~~~l~d~~-G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~gig~~g~~~~~----- 74 (299) T 2e2o_A 1 MMIIVGVDAGGTKTKAVAYDCE-GNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGLDSKF----- 74 (299) T ss_dssp CCCEEEEEECSSCEEEEEECTT-SCEEEEEEESCCCHHHHCHHHHHHHHHHHHHHHHTSCCSEEEEEETTCCSHH----- T ss_pred CCEEEEEEECHHHEEEEEECCC-CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH----- T ss_conf 9299999937003799999499-9899999927899652209999999999999855898548987047877602----- Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECC---- Q ss_conf 1356666988999982898558821265432000015865535302434557666752799317620224543105---- Q gi|254780280|r 87 TNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRA---- 162 (348) Q Consensus 87 ~~~~~~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~---- 162 (348) ............+.+|.+.||+++.++.+....+... +..|++...+..... T Consensus 75 -----~~~~~~~l~~~~~~~v~i~nd~~~a~~~~~~~~~~~~-------------------~~~g~~~~~~~~~~~~~~~ 130 (299) T 2e2o_A 75 -----DWENFTPLASLIAPKVIIQHDGVIALFAETLGEPGVV-------------------VIAGTGSVVEGYNGKEFLR 130 (299) T ss_dssp -----HHHHHHHHHTTSSSEEEEEEHHHHHHHHHHTTSCEEE-------------------EEESSSEEEEEECSSCEEE T ss_pred -----HHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCEE-------------------EECCCCEEEEEEECCEEEE T ss_conf -----3689999986038978997429999987347888079-------------------9715641577883351799 Q ss_pred ------CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCC--CHHH Q ss_conf ------88630113567866667661023478999985318986487752222389999999874088864369--8889 Q gi|254780280|r 163 ------KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVL--SSKD 234 (348) Q Consensus 163 ------~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~--~~~~ 234 (348) ..|....+++.||........ ......+.|....|+|.+.++....++................ .... T Consensus 131 ~~~~~~~~g~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 206 (299) T 2e2o_A 131 VGGRGWLLSDDGSAYWVGRKALRKVLK----MMDGLENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIAKAVD 206 (299) T ss_dssp EECSCTTTCCTTSHHHHHHHHHHHHHH----HHTTSSCCCHHHHHHHHHTTCCSHHHHHHHHHHHTTCHHHHHTTHHHHH T ss_pred EECCCCCCCCCCCCCCCCHHHHCCCCC----CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHCHHHH T ss_conf 704665336765133000132202233----4457889862889999996799999999998505786035554221545 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEE Q ss_conf 98836895799999999999999999999974899738996567765567727648999988379837889738879995 Q gi|254780280|r 235 IVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVIT 314 (348) Q Consensus 235 ~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~ 314 (348) .+++++|+.|++++++++++|+..++|+++.++|+. ||||||++.. +.|++.| ++++++-.+.... T Consensus 207 ~~a~~gd~~A~~i~~~~~~~L~~~la~~~~~~~p~~-IvlgGgv~~~-------~~~~~~l------~~~l~~~~~~~~~ 272 (299) T 2e2o_A 207 EAANEGDTVAMDILKQGAELLASQAVYLARKIGTNK-VYLKGGMFRS-------NIYHKFF------TLYLEKEGIISDL 272 (299) T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSE-EEEESGGGGS-------HHHHHHH------HHHHHHTTCEEEC T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECCHHCC-------HHHHHHH------HHHHHCCCEECCC T ss_conf 444059999999999999999999999998619977-9998933127-------6799999------9997337341567 Q ss_pred CCCCHHHHHHHHHHCCCCCCC Q ss_conf 787227759998738001244 Q gi|254780280|r 315 NPYIAIAGMVSYIKMTDCFNL 335 (348) Q Consensus 315 ~~~agl~GAa~~~r~~~~~~~ 335 (348) .++++++|||.+++++-+.+. T Consensus 273 ~~~~~~~GAa~lA~~~~g~~~ 293 (299) T 2e2o_A 273 GKRSPEIGAVILAYKEVGCDI 293 (299) T ss_dssp CSCCHHHHHHHHHHHHHTCCG T ss_pred CCCCHHHHHHHHHHHHCCCCH T ss_conf 886699999999999849984 No 18 >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, structural genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum atcc 12472} SCOP: c.55.1.5 c.55.1.5 Probab=99.88 E-value=8.6e-22 Score=151.35 Aligned_cols=277 Identities=14% Similarity=0.040 Sum_probs=137.9 Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCC-CCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEC Q ss_conf 76677379998575118999987799808899974388-73588999999997223456554699973044168556421 Q gi|254780280|r 9 FPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTS-DYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLT 87 (348) Q Consensus 9 ~~~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~-~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~ 87 (348) .|++.-+|+|||||||+|++++|.+ ++++...+.++. ...+++++++.+.+.... ..+..++..+...........+ T Consensus 7 ~~~m~y~iGIDiGgT~i~~~l~d~~-G~il~~~~~~~~~~~~~~~~~~~~i~~~i~~-~~~~~gi~~~~~~~~~~~~~~~ 84 (305) T 1zc6_A 7 NPSIRYLIGVDGGGTGTRIRLHASD-GTPLAMAEGGASALSQGIAKSWQAVLSTLEA-AFQQAGLPAAPASACAIGLGLS 84 (305) T ss_dssp -CCCCEEEEEEECSSCEEEEEEETT-CCEEEEEEESCCCGGGCHHHHHHHHHHHHHH-HHHHTTCCCCCGGGEEEEEEES T ss_pred CCCCCEEEEEECCCCEEEEEEECCC-CCEEEEEEECCCCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCCCCCEEEECCCC T ss_conf 9888689999928100899999799-9899999966998566999999999999999-9997499965433233202567 Q ss_pred CCCCCCCHHHHH-HHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCC-C Q ss_conf 356666988999-98289855882126543200001586553530243455766675279931762022454310588-6 Q gi|254780280|r 88 NYHWVIDPEELI-SRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKD-S 165 (348) Q Consensus 88 ~~~~~~~~~~l~-~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~-g 165 (348) ...|......+. ....+.++.+.||+++..+++... ....+.+..+++.+.+....... . T Consensus 85 g~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~ 146 (305) T 1zc6_A 85 GVHNRQWAGEFESQAPGFARLSLATDGYTTLLGAHGG------------------QPGIIVALGTGSIGEALYPDGSHRE 146 (305) T ss_dssp CCCTTSHHHHHHHTCCCCSEEEEECHHHHHHHHHTTT------------------SSEEEEEESSSEEEEEECTTSCEEE T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCC------------------CCEEEEEECCCCEEEEEECCCEEEE T ss_conf 7664204788888643687377603599998633068------------------9869999747735899987832897 Q ss_pred CEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHH---------HHCCCCCC--CCCCHHH Q ss_conf 301135678666676610234789999853189864877522223899999998---------74088864--3698889 Q gi|254780280|r 166 WIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALC---------IADGFESN--KVLSSKD 234 (348) Q Consensus 166 ~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~---------~~~~~~~~--~~~~~~~ 234 (348) ........|+.......... +.++...+.+...|+..+.+...... ........ ....... T Consensus 147 ~~g~g~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (305) T 1zc6_A 147 AGGWGYPSGDEASGAWLGQR--------AAQLTQMALDGRHSHSPLTRAVLDFVGGDWQAMMAWNGRATPAQFARLAPLV 218 (305) T ss_dssp ESCCCTTTSCTTSHHHHHHH--------HHHHHHHHHHTSSCCCHHHHHHHHHHTSSHHHHHHHHHTCCHHHHHTTHHHH T ss_pred ECCEEEEECCCCCCCCCCCC--------CCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 35510253454445556632--------2123200003667715999999987169858888988607803555541466 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEE Q ss_conf 98836895799999999999999999999974899738996567765567727648999988379837889738879995 Q gi|254780280|r 235 IVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVIT 314 (348) Q Consensus 235 ~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~ 314 (348) ..++.+|+.|.+++++++++|+..+ +.+..++|+. |||+|||+..+.++|. +.+++.+ +. T Consensus 219 ~~~~~gd~~a~~i~~~~~~~La~~i-~~l~~~dp~~-VVlgGGv~~~~~~~l~-~~i~~~l-----------------~~ 278 (305) T 1zc6_A 219 LSAARVDPEADALLRQAGEDAWAIA-RALDPQDELP-VALCGGLGQALRDWLP-PGFRQRL-----------------VA 278 (305) T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHH-HHHCTTCCSC-EEEESHHHHHTGGGSC-HHHHHHC-----------------CC T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHH-HHHHCCCCCE-EEEECCHHHHHHHHHH-HHHHCCC-----------------CC T ss_conf 6652347899999999999999999-9985059980-9998926888999987-9985515-----------------05 Q ss_pred CCCCHHHHHHHHHHCCCCC Q ss_conf 7872277599987380012 Q gi|254780280|r 315 NPYIAIAGMVSYIKMTDCF 333 (348) Q Consensus 315 ~~~agl~GAa~~~r~~~~~ 333 (348) ....+++||+.+|+++..+ T Consensus 279 ~~~~~~~GA~~lA~~~~~~ 297 (305) T 1zc6_A 279 PQGDSAQGALLLLQRPSTR 297 (305) T ss_dssp CSSCHHHHHHHHTC----- T ss_pred CCCCHHHHHHHHHHHHHHC T ss_conf 6899999999998607755 No 19 >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, SGC, transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Probab=99.79 E-value=1.1e-21 Score=150.62 Aligned_cols=260 Identities=13% Similarity=-0.007 Sum_probs=126.5 Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCC--EEEECCCC Q ss_conf 7379998575118999987799808899974388735889999999972234565546999730441685--56421356 Q gi|254780280|r 13 FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQK--SFTLTNYH 90 (348) Q Consensus 13 ~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~--~~~~~~~~ 90 (348) |+ ++||||||+|+++++|. ++++..+ .++. ++++++ +++++ .++.++|++.||+++... ....++.. T Consensus 21 m~-IGIDiGGT~ik~~~~d~-~g~i~~~--~~~~---~~~~i~-~~i~~---~~i~~Igi~g~G~~~~~~~~~~~~~~~~ 89 (287) T 2ews_A 21 MK-VGIDAGGTLIKIVQEQD-NQRTFKT--ELTK---NIDQVV-EWLNQ---QQIEKLCLTGGNAGVIAENINIPAQIFV 89 (287) T ss_dssp CE-EEEEECSSEEEEEEECS-SCEEEEE--EEGG---GHHHHH-HHHHT---SCCSEEEEESTTHHHHHTTSSSCCEECC T ss_pred EE-EEEEECHHHEEEEEEEC-CCCEEEE--EEHH---HHHHHH-HHHHH---HCCCEEEEEEECCCHHHHHEECCCCEEC T ss_conf 79-99998735589999909-9989998--6053---699999-99876---0688899980070133142072674204 Q ss_pred CCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCEECC Q ss_conf 66698899998289855882126543200001586553530243455766675279931762022454310588630113 Q gi|254780280|r 91 WVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPIS 170 (348) Q Consensus 91 ~~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~g~~~~a 170 (348) +............. +....+|....+...... . ...........++++|+|.|.........+....+ T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~--~~~~~~~~~~~~~g~g~G~g~~~~~~~~~~~~~~~ 157 (287) T 2ews_A 90 EFDAASQGLGILLK-EQGHDLADYIFANVGTGT---------S--LHYFDGQSQRRVGGIGTGGGMIQGLGYLLSQITDY 157 (287) T ss_dssp HHHHHHHHHHHHHH-HTTCCCSCEEEEEESSSE---------E--EEEECSSCEEEEEEESCSHHHHHHHHHHHHCCCCH T ss_pred CHHHHHHHHHHHHC-CCCCCCCCEEEEECCCCE---------E--EEEECCCCEEEEECCCCCCCEECCCCHHHCCCCCC T ss_conf 16668999998614-357764233445305432---------2--26743771698403562150540550221499972 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHCCCHHHHHHH Q ss_conf 56786666766102347899998531898648775222238999999987408886436--9888998836895799999 Q gi|254780280|r 171 CEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKV--LSSKDIVSKSEDPIALKAI 248 (348) Q Consensus 171 gE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~--~~~~~~~~~~~D~~A~~~~ 248 (348) +|.||......... +.+....|.+...+.... ....... ..........+|+.+.+++ T Consensus 158 ~e~g~~~~~g~~~~---------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~i~ 217 (287) T 2ews_A 158 KQLTDMAQHGDRNT---------IDLKVRHIYKDTEPPIPG-----------DLTAANFGHVLHHLDADFTPSNKLAAVI 217 (287) T ss_dssp HHHHHHHTTCCCTT---------TCEETTTC-------CCT-----------TSEEETTTTGGGCTTSCCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCC---------CCCCHHHHHCCCCCCHHH-----------HHHCCHHCCHHHHHHHHHCCCHHHHHHH T ss_conf 47777500479864---------444202443267643002-----------2110010001244444302124689999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHH--HHCCEEE-EECCCCHHHHHHH Q ss_conf 999999999999999974899738996567765567727648999988379837889--7388799-9578722775999 Q gi|254780280|r 249 NLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELM--RQIPTYV-ITNPYIAIAGMVS 325 (348) Q Consensus 249 ~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l--~~ipv~~-~~~~~agl~GAa~ 325 (348) +.+.++++..+.+++++++|+. |||+||++... +++ ++.+. +++ .++.+.. ...+++|.+|||. T Consensus 218 ~~~~~~l~~~i~~~~~~~~p~~-IVlgGGv~~~~-~~l-----~~~i~------~~l~~~~~~i~~~~~~~~~GalGAa~ 284 (287) T 2ews_A 218 GVVGEVVTTMAITVAREFKTEN-IVYIGSSFHNN-ALL-----RKVVE------DYTVLRGCKPYYVENGAFSGAIGALY 284 (287) T ss_dssp HHHHHHHHHHHHHHHHHTTCCE-EEEESGGGTTC-HHH-----HHHHH------HHHHHTTCEEEECTTGGGHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCE-EEEECCHHHHH-HHH-----HHHHH------HHHHHCCCEEEECCCCCHHHHHHHHH T ss_conf 9999999999998753559883-99989616602-999-----99999------99975898899679823869986998 Q ss_pred HHH Q ss_conf 873 Q gi|254780280|r 326 YIK 328 (348) Q Consensus 326 ~~r 328 (348) +++ T Consensus 285 L~k 287 (287) T 2ews_A 285 LEK 287 (287) T ss_dssp TCC T ss_pred HCC T ss_conf 658 No 20 >3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics, structural genomics consortium, SGC, allosteric enzyme; HET: GLC BG6; 2.80A {Homo sapiens} Probab=99.50 E-value=5.5e-11 Score=84.63 Aligned_cols=289 Identities=14% Similarity=0.073 Sum_probs=155.1 Q ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEEEECCC------CCCCHHHH----HHHHHHHCC-CCCCCEEEEEEEEEEEC-- Q ss_conf 379998575118999987799808899974388------73588999----999997223-45655469997304416-- Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQTS------DYENLEHA----IQEVIYRKI-SIRLRSAFLAIATPIGD-- 80 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~------~~~~~~~~----i~~~l~~~~-~~~~~~igi~v~Gpv~~-- 80 (348) ..|++|+||||.|+++|+..++.....+.++.. ..+.|.+. |.+++.+.. ..+...+|+...=|+.- T Consensus 60 ~~LalDlGGTnlRv~~V~L~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~plGfTFSFP~~q~s 139 (445) T 3hm8_A 60 DFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLG 139 (445) T ss_dssp EEEEEEESSSSEEEEEEEESSSEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCTTCCCCEEEEECSCEECSS T ss_pred EEEEEEECCCEEEEEEEEECCCEEEEEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECEEEECC T ss_conf 89999827970899999986980789988878867604988999999999999999960888776622378605534057 Q ss_pred -CCEEEECCC-CC-------CCCHHHHHHH------HCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCE Q ss_conf -855642135-66-------6698899998------28985588212654320000158655353024345576667527 Q gi|254780280|r 81 -QKSFTLTNY-HW-------VIDPEELISR------MQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSR 145 (348) Q Consensus 81 -~~~~~~~~~-~~-------~~~~~~l~~~------~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 145 (348) +....+.+. .+ +.....|.+. +..+.+.++||-.+.-++.... ..... T Consensus 140 ~~~g~L~~wtKgf~~~~~~g~dv~~lL~~Al~rr~~~~v~v~aivNDTvgtL~a~ay~-----------------~~~~~ 202 (445) T 3hm8_A 140 LDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYE-----------------DPRCE 202 (445) T ss_dssp TTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHTTCSCCCSEEEECHHHHHHHHHHTT-----------------CTTEE T ss_pred CCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCC-----------------CCCCE T ss_conf 7857999645761368877550899999999853699706999855469999842658-----------------99926 Q ss_pred EEECCCCEEEEEEEECCC--------CCCEECCCCCCCCC-----CCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHH Q ss_conf 993176202245431058--------86301135678666-----67661023478999985318986487752222389 Q gi|254780280|r 146 VIVGPGTGLGISSVIRAK--------DSWIPISCEGGHMD-----IGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLV 212 (348) Q Consensus 146 ~~ig~GtG~g~~~~~~~~--------~g~~~~agE~Gh~~-----~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~ 212 (348) +.+..|||.++++.-+.. .+...+-.|+|... ..|.+.-+..+.+ .....+.-.+|..+||+.|. T Consensus 203 iGlIlGTG~Na~y~e~~~~i~~~~~~~~~miIN~EwG~fg~~~~~~~~~T~~D~~lD~--~s~~Pg~q~fEKmiSG~YLG 280 (445) T 3hm8_A 203 IGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQ--ASINPGKQRFEKMISGMYLG 280 (445) T ss_dssp EEEEESSSEEEEEEEEGGGCTTSCCCSSEEEEECCGGGTTTTTTTTTTCCHHHHHHHH--TSSSTTSSTTGGGTSHHHHH T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHC--CCCCCCCCCHHHHHHHCCHH T ss_conf 9999988735587401025555788877189960310247887666789735366500--79998866078775032399 Q ss_pred HHHHHHHHH-------CCCCC------CCCCCHHHHHHHCCC---------------------------HHHHHHHHHHH Q ss_conf 999999874-------08886------436988899883689---------------------------57999999999 Q gi|254780280|r 213 NIYKALCIA-------DGFES------NKVLSSKDIVSKSED---------------------------PIALKAINLFC 252 (348) Q Consensus 213 ~~y~~l~~~-------~~~~~------~~~~~~~~~~~~~~D---------------------------~~A~~~~~~~~ 252 (348) .+.+...-. ..... ...+....+..-..| .+|..+.++.+ T Consensus 281 ElvR~il~~l~~~~~lf~~~~~~~l~~~~~~~t~~ls~ie~d~~~~~~~~~~l~~~~~~~~~~d~~~lr~i~~~v~~RaA 360 (445) T 3hm8_A 281 EIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAA 360 (445) T ss_dssp HHHHHHHHHHHHHTSSGGGCCCGGGGSTTCSCHHHHHHHTCTTCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999985502455788846555877635367776716977699999999975999998999999999999999999 Q ss_pred HHHHHHHHHHHHHHCC----C---CCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHHHHH Q ss_conf 9999999999997489----9---73899656776556772764899998837983788973887999578722775999 Q gi|254780280|r 253 EYLGRVAGDLALIFMA----R---GGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAGMVS 325 (348) Q Consensus 253 ~~lg~~i~~l~~~~~p----~---~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~GAa~ 325 (348) +..|.+++-++...++ + ..|-+-|++-.+.+. |++.+.+. ++++..+.+|.+...+|...+|||- T Consensus 361 ~L~Aa~iaai~~~~~~~~~~~~~~v~VgvdGS~~~~~p~------y~~~~~~~--l~~l~~~~~v~~~~~~Dgsg~GAAl 432 (445) T 3hm8_A 361 QLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPR------FSSLVAAT--VRELAPRCVVTFLQSEDGSGKGAAL 432 (445) T ss_dssp HHHHHHHHHHHHHHHHHTTCSSEEEEEEEECHHHHHCTT------HHHHHHHH--HHHHCTTEEEEEEECSSCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECEEEECCCC------HHHHHHHH--HHHHCCCCEEEEEECCCCCHHHHHH T ss_conf 999999999999743235888773599997901752755------89999999--9997799718999866860899999 Q ss_pred HHHC Q ss_conf 8738 Q gi|254780280|r 326 YIKM 329 (348) Q Consensus 326 ~~r~ 329 (348) .+-. T Consensus 433 ~Aa~ 436 (445) T 3hm8_A 433 VTAV 436 (445) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 21 >3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* Probab=99.44 E-value=1.3e-09 Score=76.06 Aligned_cols=289 Identities=16% Similarity=0.105 Sum_probs=152.4 Q ss_pred EEEEEECCCCEEEEEEECCCCE-E-EEEEEE--CCC----CCCCHH----HHHHHHHHHCCC---CCCCEEEEEEEEEEE Q ss_conf 7999857511899998779980-8-899974--388----735889----999999972234---565546999730441 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESE-P-EFCCTV--QTS----DYENLE----HAIQEVIYRKIS---IRLRSAFLAIATPIG 79 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~-i-~~~~~~--~t~----~~~~~~----~~i~~~l~~~~~---~~~~~igi~v~Gpv~ 79 (348) .|++|+||||.|+++|+..+.. . ..++++ |.. .-+.|. +.|.+++.+... .+.-.+|+...=|+. T Consensus 82 fLAlDlGGTN~Rv~~V~L~g~~~~~~~~~~~~ip~~~~~g~~~~lFd~iA~~i~~fl~~~~~~~~~~~l~lGfTFSFP~~ 161 (485) T 3o8m_A 82 FLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSEPLPLGFTFSYPAS 161 (485) T ss_dssp EEEEEESSSEEEEEEEEEESSSCEEEEEEEEECCTTGGGSBHHHHHHHHHHHHHHHHHHHCTTCCSSCEEEEEEECSCEE T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC T ss_conf 99998279848999999889997688877876887873586589999999999999998544554661332367602234 Q ss_pred C---CCEEEECCC-CC-------CCCHHHHH---HHHCC--CCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCC Q ss_conf 6---855642135-66-------66988999---98289--855882126543200001586553530243455766675 Q gi|254780280|r 80 D---QKSFTLTNY-HW-------VIDPEELI---SRMQF--EDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFS 143 (348) Q Consensus 80 ~---~~~~~~~~~-~~-------~~~~~~l~---~~~~~--~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 143 (348) - +....+.+. .+ +....-|. ++.+. +.+.++||-.+.-.+..... .. T Consensus 162 Q~~i~~g~Li~wtKgF~~~~v~G~dv~~lL~~Al~r~~~~v~v~aivNDTvgTL~a~ay~~-----------------~~ 224 (485) T 3o8m_A 162 QKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTD-----------------PQ 224 (485) T ss_dssp CSBTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHC-----------------TT T ss_pred CCCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCC-----------------CC T ss_conf 6789967998704741057867873689999999973999239999543499998644089-----------------99 Q ss_pred CEEEECCCCEEEEEEEECC---------------CCCCEECCCCCCCCCC----CCCCHHHHHHHHHHHHHCCCCCCHHH Q ss_conf 2799317620224543105---------------8863011356786666----76610234789999853189864877 Q gi|254780280|r 144 SRVIVGPGTGLGISSVIRA---------------KDSWIPISCEGGHMDI----GPSTQRDYEIFPHLTERAEGRLSAEN 204 (348) Q Consensus 144 ~~~~ig~GtG~g~~~~~~~---------------~~g~~~~agE~Gh~~~----~~~~~~~~~~~~~l~~~~g~~~~~E~ 204 (348) ..+.+..|||.+.++.-+. ..+...+-.|+|...- .|.+.-+..+.+ .....+.-.+|. T Consensus 225 ~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~~~~~miIN~EwG~F~~~~~~lp~T~~D~~lD~--~S~nPg~q~fEK 302 (485) T 3o8m_A 225 TKMGIIIGTGVNGAYYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSFDNEHLVLPRTKYDVIIDE--ESPRPGQQAFEK 302 (485) T ss_dssp EEEEEEESSSEEEEEEEEGGGCGGGTTTCCTTSCTTCEEEEECCGGGTTTTCSSSCCCHHHHHHHH--HSSSTTSCHHHH T ss_pred CEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH--CCCCCCCCCCHH T ss_conf 449999757510489837104741036674446888728998555257998655778777877503--579999722113 Q ss_pred HHCCHHHHHHHHHHHH----HC---CCCCCC------CCCHHHHH-----------------HHC-C-----------CH Q ss_conf 5222238999999987----40---888643------69888998-----------------836-8-----------95 Q gi|254780280|r 205 LLSGKGLVNIYKALCI----AD---GFESNK------VLSSKDIV-----------------SKS-E-----------DP 242 (348) Q Consensus 205 ~~SG~gl~~~y~~l~~----~~---~~~~~~------~~~~~~~~-----------------~~~-~-----------D~ 242 (348) .+||+.|..+.+...- .. .....+ .+...++. ... + -. T Consensus 303 miSG~YLGElvRlvl~~l~~~~~lF~~~~~~~l~~~~~l~t~~ls~ie~d~~~~~~~~~~~l~~~~~~~~t~~d~~~vr~ 382 (485) T 3o8m_A 303 MTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIETTVVERKLIRK 382 (485) T ss_dssp HHSTTTHHHHHHHHHHHHHHTTSSSTTSCCGGGGSTTCSCTHHHHHHHHCCCTTCHHHHHHHHHHHCCCCCHHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 12023499999999999986155557888777727877665236777528885599999999863698899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHH-------HHCCEEEEE Q ss_conf 79999999999999999999997489973-8996567765567727648999988379837889-------738879995 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIFMARGG-VYISGGIPYKIIDLLRNSSFRESFENKSPHKELM-------RQIPTYVIT 314 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~~p~~~-IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l-------~~ipv~~~~ 314 (348) +|..+.++.++..+.+++-++.-.+.+.. |-+-||+-.+.+ .|.+...+. +++++ ...+|.+.. T Consensus 383 I~~~V~~RAA~L~Aa~iaai~~k~~~~~~~V~vDGSv~~~~p------~f~~~~~~~--l~~ll~~~~~~~~~~~v~l~~ 454 (485) T 3o8m_A 383 LAELVGTRAARLTVCGVSAICDKRGYKTAHIAADGSVFNRYP------GYKEKAAQA--LKDIYNWDVEKMEDHPIQLVA 454 (485) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEESHHHHHST------THHHHHHHH--HHHHHTCCCCSGGGCSEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCC------CHHHHHHHH--HHHHHHCCCCCCCCCCEEEEE T ss_conf 999999879999999999999854998627999687232386------778999999--999862510126797479999 Q ss_pred CCCCHHHHHHHHHHCC Q ss_conf 7872277599987380 Q gi|254780280|r 315 NPYIAIAGMVSYIKMT 330 (348) Q Consensus 315 ~~~agl~GAa~~~r~~ 330 (348) -+|...+|||-.|-.. T Consensus 455 ~~DGSg~GAAl~Aa~a 470 (485) T 3o8m_A 455 AEDGSGVGAAIIACLT 470 (485) T ss_dssp CCCTTTHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHHH T ss_conf 1285299999999999 No 22 >3f9m_A Glucokinase; hexokinase IV, alternative splicing, ATP- binding, diabetes mellitus, disease mutation, glycolysis, nucleotide-binding, polymorphism; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A* Probab=99.43 E-value=3.8e-10 Score=79.43 Aligned_cols=289 Identities=16% Similarity=0.114 Sum_probs=149.6 Q ss_pred EEEEEECCCCEEEEEEECCCCE-----EE-EEEEECC------CCCCCHH----HHHHHHHHHCC-CCCCCEEEEEEEEE Q ss_conf 7999857511899998779980-----88-9997438------8735889----99999997223-45655469997304 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESE-----PE-FCCTVQT------SDYENLE----HAIQEVIYRKI-SIRLRSAFLAIATP 77 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~-----i~-~~~~~~t------~~~~~~~----~~i~~~l~~~~-~~~~~~igi~v~Gp 77 (348) .|++|+||||.|+++|+..++. +. ..+.++. ...+.|. +.|.+++.+.. ....-.+|+...=| T Consensus 79 fLAlDlGGTNlRV~~V~L~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~fl~~~~~~~~~lplGfTFSFP 158 (470) T 3f9m_A 79 FLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKHKKLPLGFTFSFP 158 (470) T ss_dssp EEEEEESSSEEEEEEEEEEC----CEEEEEEEEEEECCHHHHSSBHHHHHHHHHHHHHHHHHHTTCSSSCCEEEEEECSC T ss_pred EEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCE T ss_conf 99997189848999999789877871168777530478565158668899999999999998625566677516885150 Q ss_pred EEC---CCEEEECCC-CCC------CCHHH-HH---HHH---CCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCC Q ss_conf 416---855642135-666------69889-99---982---89855882126543200001586553530243455766 Q gi|254780280|r 78 IGD---QKSFTLTNY-HWV------IDPEE-LI---SRM---QFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRS 140 (348) Q Consensus 78 v~~---~~~~~~~~~-~~~------~~~~~-l~---~~~---~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~ 140 (348) +.- +....+.+. .+. .+..+ |. ++. ..+.+.++||-.+.-++.... T Consensus 159 ~~Q~sl~~g~L~~wtKgF~~~~~~G~dv~~lL~~al~rr~~~~v~v~aivNDTvgTLls~ay~----------------- 221 (470) T 3f9m_A 159 VRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYE----------------- 221 (470) T ss_dssp EEEEETTEEEECCCCTTCCCBTCBTSBHHHHHHHHHHHHCSCCCEEEEEECHHHHHHHHHHTT----------------- T ss_pred EECCCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCC----------------- T ss_conf 021667847998556742558877662799999999974899741899956769999735558----------------- Q ss_pred CCCCEEEECCCCEEEEEEEECC--------CCCCEECCCCCCCCCCCCCC-HHHHHHHHHHHHHCC--CCCCHHHHHCCH Q ss_conf 6752799317620224543105--------88630113567866667661-023478999985318--986487752222 Q gi|254780280|r 141 LFSSRVIVGPGTGLGISSVIRA--------KDSWIPISCEGGHMDIGPST-QRDYEIFPHLTERAE--GRLSAENLLSGK 209 (348) Q Consensus 141 ~~~~~~~ig~GtG~g~~~~~~~--------~~g~~~~agE~Gh~~~~~~~-~~~~~~~~~l~~~~g--~~~~~E~~~SG~ 209 (348) .....+.+..|||.+.++.-+. ..+...+-.|+|...-.+.. ....++...+-..+. +.-.+|..+||+ T Consensus 222 ~~~~~iGlIlGTG~Na~y~e~~~~i~~~~~~~~~miINtEwG~fg~~~~l~~~~T~~D~~lD~~S~~Pg~q~fEKmiSG~ 301 (470) T 3f9m_A 222 DHQCEVGMIVGTGCNACYMEEMQNVELVEGDEGRMCVNTEWGAFGDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGK 301 (470) T ss_dssp CTTEEEEEEESSSEEEEEEEEGGGCTTSSCCSSEEEEECCGGGTTTTSTTGGGCCHHHHHHHHHSSSTTSCHHHHTTCHH T ss_pred CCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEHHHHHC T ss_conf 99946999996763478960024666556888826883134457887777667787778763368999985131322014 Q ss_pred HHHHHHHHHHHH----C---CCCCC------CCCCHHHHHHHCCC---------------------------HHHHHHHH Q ss_conf 389999999874----0---88864------36988899883689---------------------------57999999 Q gi|254780280|r 210 GLVNIYKALCIA----D---GFESN------KVLSSKDIVSKSED---------------------------PIALKAIN 249 (348) Q Consensus 210 gl~~~y~~l~~~----~---~~~~~------~~~~~~~~~~~~~D---------------------------~~A~~~~~ 249 (348) .|..+.+...-. . ..... ..++...+..-..| .+|..+.+ T Consensus 302 YLGELvRlil~~l~~~~~lf~g~~~~~L~~~~~l~t~~ls~ie~d~~~~~~~~~~l~~~~~~~s~~d~~~lr~I~~~V~~ 381 (470) T 3f9m_A 302 YMGELVRLVLLRLVDENLLFHGEASEQLRTRGAFETRFVSQVESDTGDRKQIYNILSTLGLRPSTTDCDIVRRACESVST 381 (470) T ss_dssp HHHHHHHHHHHHHHHTTCSGGGCCCTTTTSTTCSCHHHHHHHHTCCSSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 49999999999998603445898867872789864078988862886289999999854999998999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHC------C-CCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHH Q ss_conf 999999999999999748------9-973899656776556772764899998837983788973887999578722775 Q gi|254780280|r 250 LFCEYLGRVAGDLALIFM------A-RGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAG 322 (348) Q Consensus 250 ~~~~~lg~~i~~l~~~~~------p-~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~G 322 (348) +.++..|.+++-++.... . ...|-+-|++-++.+ .|++...+. .++++.+.+|.+...+|...+| T Consensus 382 RAA~L~Aa~iaail~~~~~~~~~~~~~i~VgvdGSv~~~~p------~f~~~~~~~--l~~l~~~~~i~l~~~~DGsg~G 453 (470) T 3f9m_A 382 RAAHMCSAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHP------SFKERFHAS--VRRLTPSCEITFIESEEGSGRG 453 (470) T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSEEEEEEEECHHHHHCT------THHHHHHHH--HHHHCTTEEEEEEECSSHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEECCC------CHHHHHHHH--HHHHCCCCCEEEEECCCCHHHH T ss_conf 99999999999999985134578886189999680142586------789999999--9986799717999866862899 Q ss_pred HHHHHH Q ss_conf 999873 Q gi|254780280|r 323 MVSYIK 328 (348) Q Consensus 323 Aa~~~r 328 (348) ||-.+- T Consensus 454 AAl~Aa 459 (470) T 3f9m_A 454 AALVSA 459 (470) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 23 >1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* Probab=99.41 E-value=9.4e-10 Score=77.00 Aligned_cols=77 Identities=12% Similarity=-0.018 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-----C--CCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEEC Q ss_conf 79999999999999999999997489-----9--7389965677655677276489999883798378897388799957 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIFMA-----R--GGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITN 315 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~~p-----~--~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~ 315 (348) +|..+.++.++..|.+++-++...+. . ..|-+-||+-.+.+. |++...+. ++++....+|.+... T Consensus 822 i~~~V~~RaA~L~Aa~iaai~~~~~~~~~~~~~~~~VgvdGSv~~~~p~------f~~~~~~~--l~~l~~~~~v~l~~a 893 (917) T 1cza_N 822 VCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNVTVGVDGTLYKLHPH------FSRIMHQT--VKELSPKCNVSFLLS 893 (917) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECHHHHHCTT------HHHHHHHH--HHHHSTTEEEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHCCCC------HHHHHHHH--HHHHCCCCCEEEEEC T ss_conf 9999999999999999999999634345888785699997935314866------89999999--998679985799992 Q ss_pred CCCHHHHHHHHH Q ss_conf 872277599987 Q gi|254780280|r 316 PYIAIAGMVSYI 327 (348) Q Consensus 316 ~~agl~GAa~~~ 327 (348) +|-..+|||-.| T Consensus 894 ~DGSg~GAAl~A 905 (917) T 1cza_N 894 EDGSGKGAALIT 905 (917) T ss_dssp SSCSHHHHHHHH T ss_pred CCCCHHHHHHHH T ss_conf 287589999999 No 24 >1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3 Probab=99.41 E-value=2.5e-09 Score=74.34 Aligned_cols=290 Identities=14% Similarity=0.042 Sum_probs=152.2 Q ss_pred CEEEEEECCCCEEEEEEECCCC---EEEEEEEEC--CC----CCCCHHH----HHHHHHHHCC-CCCCCEEEEEEEEEEE Q ss_conf 3799985751189999877998---088999743--88----7358899----9999997223-4565546999730441 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMES---EPEFCCTVQ--TS----DYENLEH----AIQEVIYRKI-SIRLRSAFLAIATPIG 79 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~---~i~~~~~~~--t~----~~~~~~~----~i~~~l~~~~-~~~~~~igi~v~Gpv~ 79 (348) ..|++|+||||.|+++|+..+. .+...+.++ .. ..+.|.+ .|.+++.+.. ....-.+|+...=|+. T Consensus 69 ~~LAlDlGGTnlRV~~V~L~g~~~~~~~~~~~~~ip~~~~~~~~~~lFd~iA~~i~~fl~~~~~~~~~l~lGfTFSFP~~ 148 (451) T 1bdg_A 69 NFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMKDKKFDLGFTFSFPCV 148 (451) T ss_dssp EEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHHHTTCCSSCEEEEEEECSCEE T ss_pred EEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECEEE T ss_conf 99999808984899999983899457999998608888725989999999999999999855875545656528703402 Q ss_pred C--CCEEEECCC--CC-------CCCHHHHHHHH-----CCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCC Q ss_conf 6--855642135--66-------66988999982-----89855882126543200001586553530243455766675 Q gi|254780280|r 80 D--QKSFTLTNY--HW-------VIDPEELISRM-----QFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFS 143 (348) Q Consensus 80 ~--~~~~~~~~~--~~-------~~~~~~l~~~~-----~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 143 (348) - -....+..+ .+ +.....|.+.+ ..+.+.++||-.+.-++.... ... T Consensus 149 Q~si~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~~v~v~aivNDTvgTL~a~ay~-----------------~~~ 211 (451) T 1bdg_A 149 QKGLTHATLVRWTKGFSADGVEGHNVAELLQTELDKRELNVKCVAVVNDTVGTLASCALE-----------------DPK 211 (451) T ss_dssp EETTTEEEECCCCTTCCCBTCTTSBHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHTT-----------------CTT T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCC-----------------CCC T ss_conf 057785699843675046786777378999999986499827999956779999841648-----------------999 Q ss_pred CEEEECCCCEEEEEEEECC---------CCCCEECCCCCCCCCC-----CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCH Q ss_conf 2799317620224543105---------8863011356786666-----7661023478999985318986487752222 Q gi|254780280|r 144 SRVIVGPGTGLGISSVIRA---------KDSWIPISCEGGHMDI-----GPSTQRDYEIFPHLTERAEGRLSAENLLSGK 209 (348) Q Consensus 144 ~~~~ig~GtG~g~~~~~~~---------~~g~~~~agE~Gh~~~-----~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~ 209 (348) ..+.+..|||.+.++.-+. ..+...+-.|+|...- .|.+.-+..+.. .....+.-.+|..+||+ T Consensus 212 ~~iGlIlGTG~Na~y~e~~~~i~k~~~~~~~~miIN~EwG~fg~~~~~~lp~T~~D~~lD~--~S~~pg~q~fEKmiSG~ 289 (451) T 1bdg_A 212 CAVGLIVGTGTNVAYIEDSSKVELMDGVKEPEVVINTEWGAFGEKGELDCWRTQFDKSMDI--DSLHPGKQLYEKMVSGM 289 (451) T ss_dssp EEEEEEESSSEEEEEEEETTTCGGGCSCSSSEEEEECCGGGTTTTSTTTTTCCHHHHHHHH--TSSSTTSCTTHHHHSHH T ss_pred CEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHH--CCCCCCCCCHHHHHCCC T ss_conf 2699999787015997312016544578998379951020358876556788867887644--58998974024652114 Q ss_pred HHHHHHHHHHHH----CC---CCCCC------CCCHHHH-----------------HHHC-----CC--------HHHHH Q ss_conf 389999999874----08---88643------6988899-----------------8836-----89--------57999 Q gi|254780280|r 210 GLVNIYKALCIA----DG---FESNK------VLSSKDI-----------------VSKS-----ED--------PIALK 246 (348) Q Consensus 210 gl~~~y~~l~~~----~~---~~~~~------~~~~~~~-----------------~~~~-----~D--------~~A~~ 246 (348) .|..+.+...-. .. ....+ .+...++ .... -+ .+|.. T Consensus 290 YLGEl~R~il~~l~~~~~lf~g~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~~l~~~~~~~~~s~~d~~~lr~i~~~ 369 (451) T 1bdg_A 290 YLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLTRYLTDVERDPAHLLYNTHYMLTDDLHVPVVEPIDNRIVRYACEM 369 (451) T ss_dssp HHHHHHHHHHHHHHHTTSSGGGCCCSGGGSTTCSCTTHHHHHTTCCTTCCHHHHHHHHHTSCCSSCCHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 49999999999998664666888857763887645377887744883789999999875059899999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-EEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHH-HHCCEEEEECCCCHHHHHH Q ss_conf 9999999999999999997489973-8996567765567727648999988379837889-7388799957872277599 Q gi|254780280|r 247 AINLFCEYLGRVAGDLALIFMARGG-VYISGGIPYKIIDLLRNSSFRESFENKSPHKELM-RQIPTYVITNPYIAIAGMV 324 (348) Q Consensus 247 ~~~~~~~~lg~~i~~l~~~~~p~~~-IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l-~~ipv~~~~~~~agl~GAa 324 (348) +.++.++..|.+++-++...+.... |-+-|++-.+.+. |++...+. .+.+. ...+|.+..-+|...+||| T Consensus 370 I~~RaA~L~Aa~iaai~~~~~~~~~~V~vdGSv~~~~p~------f~~~~~~~--l~~l~~~~~~i~l~~~~DGSg~GAA 441 (451) T 1bdg_A 370 VVKRAAYLAGAGIACILRRINRSEVTVGVDGSLYKFHPK------FCERMTDM--VDKLKPKNTRFCLRLSEDGSGKGAA 441 (451) T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEEEESHHHHHCTT------HHHHHHHH--HHHHSCTTCEEEEEECTTHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEECCCC------HHHHHHHH--HHHHCCCCCEEEEEEEECCHHHHHH T ss_conf 999999999999999997518983599996814116842------89999999--9986389955999990087089999 Q ss_pred HHHHCC Q ss_conf 987380 Q gi|254780280|r 325 SYIKMT 330 (348) Q Consensus 325 ~~~r~~ 330 (348) -.|-.- T Consensus 442 l~Aa~~ 447 (451) T 1bdg_A 442 AIAASC 447 (451) T ss_dssp HHHTTC T ss_pred HHHHHH T ss_conf 999997 No 25 >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.30A {Porphyromonas gingivalis W83} SCOP: c.55.1.5 c.55.1.5 Probab=99.36 E-value=6.9e-10 Score=77.82 Aligned_cols=265 Identities=14% Similarity=0.080 Sum_probs=122.2 Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEECCCCC-CCHHHHHHHH---HHH---CCCCCCCEEEEEEEEEEECCCEEEEC Q ss_conf 7999857511899998779980889997438873-5889999999---972---23456554699973044168556421 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDY-ENLEHAIQEV---IYR---KISIRLRSAFLAIATPIGDQKSFTLT 87 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~-~~~~~~i~~~---l~~---~~~~~~~~igi~v~Gpv~~~~~~~~~ 87 (348) ||++|-||||+++.|++ ++..+...+..+++.+ .+.+.+.+.+ +.+ .....+..++++.+|- .... T Consensus 2 iL~vDgGGTKT~~~l~~-~g~~i~~~~~~~~N~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~~~aG~-~~~~----- 74 (291) T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EGKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAIGQKASSIRAVYFYGAGC-TPAK----- 74 (291) T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHHTTSTTTCCEEEEEETTC-CTTT----- T ss_pred EEEEEECHHHEEEEEEC-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-CHHH----- T ss_conf 89999363257899998-9978999974888820179999999999999999863688841699998337-5333----- Q ss_pred CCCCCCCHHHHHHHH-CCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCC Q ss_conf 356666988999982-8985588212654320000158655353024345576667527993176202245431058863 Q gi|254780280|r 88 NYHWVIDPEELISRM-QFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSW 166 (348) Q Consensus 88 ~~~~~~~~~~l~~~~-~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~g~ 166 (348) -......+.+.+ ...++.+.||..+..++... ....+++..|||..+..... .|. T Consensus 75 ---~~~~~~~l~~~~~~~~~v~V~nD~~~a~~aa~~-------------------~~~GivvIaGTGSi~~~~~~--~g~ 130 (291) T 1zbs_A 75 ---APMLNEALDSMLPHCDRIEVAGDMLGAARALCG-------------------DSEGIACILGTGSNSCLFDG--REI 130 (291) T ss_dssp ---HHHHHHHHHHHSTTCSEEEEECHHHHHHHHHTT-------------------TSCEEEEEESSSEEEEEECS--SSE T ss_pred ---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCC-------------------CCCEEEEECCCCEEEEEEEC--CCC T ss_conf ---199999999864347729995486999997336-------------------89639998589826999978--987 Q ss_pred EECCCCCCCCCCCCCCHHH---HHHHHHHHHHCCCCCCHHHHHCCHHHHH--HHHHHHHHCCCCCCCCCCHHHHHHHCCC Q ss_conf 0113567866667661023---4789999853189864877522223899--9999987408886436988899883689 Q gi|254780280|r 167 IPISCEGGHMDIGPSTQRD---YEIFPHLTERAEGRLSAENLLSGKGLVN--IYKALCIADGFESNKVLSSKDIVSKSED 241 (348) Q Consensus 167 ~~~agE~Gh~~~~~~~~~~---~~~~~~l~~~~g~~~~~E~~~SG~gl~~--~y~~l~~~~~~~~~~~~~~~~~~~~~~D 241 (348) ..-.|-+||..-...+.-. ..+...++...+ ..-.+.+..-.++.. ...........+..-..-+..+.+.++| T Consensus 131 ~~r~GGwG~llGDeGSG~wiG~~al~~~l~~~d~-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~A~~v~~~~~d 209 (291) T 1zbs_A 131 KANVSPLGYILGDEGSGAVLGRLFIGSLLKGQMP-EGLCEAFLQEYGLTSADIIESVYRKPFPNRFLAGFSPFIAQHLDI 209 (291) T ss_dssp EEECCCCHHHHCCTTSHHHHHHHHHHHHHTTCSC-TTHHHHHHHHTTCCHHHHHHHHHHSSCHHHHHHTTHHHHHTTTTS T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC T ss_conf 7882378888799830889999999999976122-679999999978896888999985579824134756889983999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHH Q ss_conf 57999999999999999999999748997-38996567765567727648999988379837889738879995787227 Q gi|254780280|r 242 PIALKAINLFCEYLGRVAGDLALIFMARG-GVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAI 320 (348) Q Consensus 242 ~~A~~~~~~~~~~lg~~i~~l~~~~~p~~-~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl 320 (348) +.|.+++++.+..|...+ ...+.... -|++.|||+..+.+++ + +.++...+.+..-..-++ T Consensus 210 ~~a~~ii~~a~~~l~~~~---~~~~~~~~~pv~~~Ggva~~~~~~l-----~----------~~l~~~~i~~~~i~~~Pi 271 (291) T 1zbs_A 210 PAVYSLVQNSFDDFLVRN---VLRYNRPDLPLHFIGSVAFHYREVL-----S----------SVIKKRGLTLGSVLQSPM 271 (291) T ss_dssp HHHHHHHHHHHHHHHHHH---TGGGCCTTSCEEEESHHHHHTHHHH-----H----------HHHHHTTCCEEEEESCSH T ss_pred HHHHHHHHHHHHHHHHHH---HHHCCCCCCCEEEEECHHHHHHHHH-----H----------HHHHHCCCEECCCCCCHH T ss_conf 699999999999999999---9835789841999904699889999-----9----------999985987525467835 Q ss_pred HHHHHHHHC Q ss_conf 759998738 Q gi|254780280|r 321 AGMVSYIKM 329 (348) Q Consensus 321 ~GAa~~~r~ 329 (348) .|+..|-.+ T Consensus 272 ~Glv~yh~~ 280 (291) T 1zbs_A 272 EGLIQYHHN 280 (291) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 899999985 No 26 >2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A Probab=99.36 E-value=7e-09 Score=71.61 Aligned_cols=287 Identities=8% Similarity=-0.020 Sum_probs=153.0 Q ss_pred EEEEEECCCCEEEEEEECCCCEE--EEEEEECCC------CCCCHH----HHHHHHHHHCCC--CCCCEEEEEEEEEEEC Q ss_conf 79998575118999987799808--899974388------735889----999999972234--5655469997304416 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESEP--EFCCTVQTS------DYENLE----HAIQEVIYRKIS--IRLRSAFLAIATPIGD 80 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~i--~~~~~~~t~------~~~~~~----~~i~~~l~~~~~--~~~~~igi~v~Gpv~~ 80 (348) .|++|+||||.|+.+|+..+... ...++++.. ..+.|. +.|.+++++... ...-.+|+...=|+.- T Consensus 63 fLAlDlGGTNlRV~~V~L~g~~~~~i~~~~~~ip~~~~~gt~~~LFd~IA~~i~~fl~~~~~~~~~~lplGfTFSFP~~Q 142 (457) T 2yhx_A 63 FLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSSXAGSVPLGFTFXEAGAK 142 (457) T ss_dssp EEEEEECSSEEEEEEEEEETTEEEEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHHHHTSSCSSCEEEEEECCSCCCC T ss_pred EEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCHHHCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEE T ss_conf 99998289868999999818997788578998887865698778646558889999851154544435505797163688 Q ss_pred CCEEEECCCCCC---------CCHHHHHHH-----HCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEE Q ss_conf 855642135666---------698899998-----289855882126543200001586553530243455766675279 Q gi|254780280|r 81 QKSFTLTNYHWV---------IDPEELISR-----MQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRV 146 (348) Q Consensus 81 ~~~~~~~~~~~~---------~~~~~l~~~-----~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 146 (348) .....-....|. ....-|.+. .....+.++||-.+.-.+.... .....+ T Consensus 143 ~si~~g~L~~wtKgf~~~~g~dv~~lL~~al~r~~~~v~vvAivNDTvgTL~a~ay~-----------------d~~~~i 205 (457) T 2yhx_A 143 EXVIKGQITXQAXAFSLAXLXKLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYT-----------------DAXIKM 205 (457) T ss_dssp SBTTCCBCSSCCTTCCCSSCSSBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHH-----------------CTTEEE T ss_pred EECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEEECCCCC-----------------CCCCEE T ss_conf 762773699974244555556589999888875177540478874366973223228-----------------988469 Q ss_pred EECCCCEEEEEEEECC-------------CCCCEECCCCCCCCCC----CCCCHHHHHHHHHHHHHCCCCCCHHHHHCCH Q ss_conf 9317620224543105-------------8863011356786666----7661023478999985318986487752222 Q gi|254780280|r 147 IVGPGTGLGISSVIRA-------------KDSWIPISCEGGHMDI----GPSTQRDYEIFPHLTERAEGRLSAENLLSGK 209 (348) Q Consensus 147 ~ig~GtG~g~~~~~~~-------------~~g~~~~agE~Gh~~~----~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~ 209 (348) .+..|||.+.++.-+. ..+...+-.|+|...- .|.+.-+..+.+ ....+.-.+|..+||+ T Consensus 206 GlIlGTG~NacY~E~~~~i~k~~~~~~~~~~~~miINtEwG~Fd~~~~~lp~T~~D~~lD~---~SnpG~Q~fEKMiSG~ 282 (457) T 2yhx_A 206 GIIFGSGVNAAYWCDSTXIGDAADGGXXGGAGXMXICCDQSSFRKAFPSLPQIXYLXTLNX---XSPXAXKTFXKNSXAK 282 (457) T ss_dssp EEEESSSEEEEEEECGGGSSCTTSCSSSCSSCCEEEECCCTTTTTTCSSSCCCHHHHHHHH---HSSCSCCHHHHHHCGG T ss_pred EEEEECCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHCCC T ss_conf 9999467105899764463000245778877706998212566888756877600134445---6766304678876155 Q ss_pred HHHHHHHHHHHHC---CC----C-----CCCCCCHHHHHHH----CC--------------------C-----HHHHHHH Q ss_conf 3899999998740---88----8-----6436988899883----68--------------------9-----5799999 Q gi|254780280|r 210 GLVNIYKALCIAD---GF----E-----SNKVLSSKDIVSK----SE--------------------D-----PIALKAI 248 (348) Q Consensus 210 gl~~~y~~l~~~~---~~----~-----~~~~~~~~~~~~~----~~--------------------D-----~~A~~~~ 248 (348) .|..+.+...-.. +. . ....+...++..- .. | .+|..+. T Consensus 283 YLGELvRlvl~~l~~~g~lf~~~~~~L~~~~~l~T~~lS~ie~d~~~~l~~~~~~l~~~~~~~~t~~d~~~vr~i~~~V~ 362 (457) T 2yhx_A 283 NXGQSLRDVLMXFKXXGQXHXXXAXSFXAANVENTSYPAKIQKLPHFDLRXXXDLFXGDQGIAXKTXMKXVVRRXLFLIA 362 (457) T ss_dssp GHHHHHHHHHHHHHHTTSSSSSCCCSCCSTTCSCTHHHHHHHHCCSSSCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 31799999999998627432457665425777683048774408885167899998876187765467899999998885 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC-EEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH-------HCCEEEEECCCCHH Q ss_conf 99999999999999997489973-89965677655677276489999883798378897-------38879995787227 Q gi|254780280|r 249 NLFCEYLGRVAGDLALIFMARGG-VYISGGIPYKIIDLLRNSSFRESFENKSPHKELMR-------QIPTYVITNPYIAI 320 (348) Q Consensus 249 ~~~~~~lg~~i~~l~~~~~p~~~-IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~-------~ipv~~~~~~~agl 320 (348) ++.++..|.+++-++...+.+.. |-+.|++ .+ .+.|.+...+. +++++. .-+|.+...+|-.- T Consensus 363 ~RAArL~Aa~iaai~~k~g~~~~~VgvDGSv-~k------yP~F~~~~~~~--l~~ll~~~~~~~~~~~i~l~~a~DGSG 433 (457) T 2yhx_A 363 AYAFRLVVCXIXAICQKKGYSSGHIAAXGSX-RS------YSGFSXNSATX--NXNIYGWPQSAXXSKPIXITPAIDGXG 433 (457) T ss_dssp HHHHHHHTHHHHHHHHHHTCSSEEEEEESTT-TT------STTHHHHHHHH--HHHHHCCCCSSGGGSSEEEEECCCTTT T ss_pred HHEEEHHHHHHHHHHHHCCCCCEEEEEECCC-CC------CCCHHHHHHHH--HHHHHCCCCCCCCCCCEEEEECCCCCC T ss_conf 5413699979879983149984599997885-65------98628999999--999857755444576357898899758 Q ss_pred HHHHHHHHCC Q ss_conf 7599987380 Q gi|254780280|r 321 AGMVSYIKMT 330 (348) Q Consensus 321 ~GAa~~~r~~ 330 (348) +|||-.+-.. T Consensus 434 vGAAliAA~a 443 (457) T 2yhx_A 434 AASXVIXSIA 443 (457) T ss_dssp HHHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 1588999997 No 27 >1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* Probab=99.35 E-value=2.6e-09 Score=74.26 Aligned_cols=287 Identities=13% Similarity=0.095 Sum_probs=150.2 Q ss_pred CEEEEEECCCCEEEEEEECCCC--E-E-EEEEEECCC------CCCCHH----HHHHHHHHHCC-CCCCCEEEEEEEEEE Q ss_conf 3799985751189999877998--0-8-899974388------735889----99999997223-456554699973044 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMES--E-P-EFCCTVQTS------DYENLE----HAIQEVIYRKI-SIRLRSAFLAIATPI 78 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~--~-i-~~~~~~~t~------~~~~~~----~~i~~~l~~~~-~~~~~~igi~v~Gpv 78 (348) ..|++|+||||.|+++|+..+. . + ...+.++.. ..+.|- +.|.+++++.. ..+...+|+...=|+ T Consensus 79 ~fLAlDlGGTNlRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~~~~~~LFd~IA~~i~~fl~~~~~~~~~lplGfTFSFP~ 158 (917) T 1cza_N 79 DFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIKDKKLPVGFTFSFPC 158 (917) T ss_dssp EEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEECCCHHHHSSBHHHHHHHHHHHHHHHHHHHTCTTSCCCEEEEECSCE T ss_pred EEEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEE T ss_conf 89999707974999999974898863788886126886784589999999999999999986277777763179961701 Q ss_pred ECCCEEEECCCCCC----C------CHHH-H----HHH--HCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC Q ss_conf 16855642135666----6------9889-9----998--2898558821265432000015865535302434557666 Q gi|254780280|r 79 GDQKSFTLTNYHWV----I------DPEE-L----ISR--MQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSL 141 (348) Q Consensus 79 ~~~~~~~~~~~~~~----~------~~~~-l----~~~--~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~ 141 (348) .-.....-....|. . +... | .++ +..+.+.++||-.+.-.+.... . T Consensus 159 ~Q~sl~~g~L~~wtKgF~~~~v~G~dv~~lL~~Al~r~~~~~v~v~aivNDTvgTL~s~ay~-----------------~ 221 (917) T 1cza_N 159 QQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYD-----------------D 221 (917) T ss_dssp ECSSTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHH-----------------C T ss_pred ECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCC-----------------C T ss_conf 22677867998733555577767841899999999973788713899953558878740458-----------------9 Q ss_pred CCCEEEECCCCEEEEEEEECC--------CCCCEECCCCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCCCHHHHHCC Q ss_conf 752799317620224543105--------88630113567866667-----66102347899998531898648775222 Q gi|254780280|r 142 FSSRVIVGPGTGLGISSVIRA--------KDSWIPISCEGGHMDIG-----PSTQRDYEIFPHLTERAEGRLSAENLLSG 208 (348) Q Consensus 142 ~~~~~~ig~GtG~g~~~~~~~--------~~g~~~~agE~Gh~~~~-----~~~~~~~~~~~~l~~~~g~~~~~E~~~SG 208 (348) ....+.+..|||.+.++.-+. ..+...+-.|+|...-. |.+.-+..+.+ .....+.-.+|..+|| T Consensus 222 ~~~~iGlI~GTG~Nacy~e~~~~i~~~~~~~~~miINtEwG~fg~~~~l~~~~T~~D~~lD~--~S~~Pg~Q~fEKmiSG 299 (917) T 1cza_N 222 QHCEVGLIIGTGTNACYMEELRHIDLVEGDEGRMCINTEWGAFGDDGSLEDIRTEFDRAIDA--YSLNPGKQLFEKMVSG 299 (917) T ss_dssp TTEEEEEEESSSEEEEEEEEGGGCTTSSCCSSEEEEECCGGGTTTTTTTTTTCCHHHHHHHH--TSSSTTSSTTHHHHSH T ss_pred CCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHH--CCCCCCCEEHHHHHHH T ss_conf 98069999827677899835033453458887389985443257777666788847799863--6899896033566554 Q ss_pred HHHHHHHHHHHHH----C---CCCCC------CCCCHHHHHHHCC---------------------------CHHHHHHH Q ss_conf 2389999999874----0---88864------3698889988368---------------------------95799999 Q gi|254780280|r 209 KGLVNIYKALCIA----D---GFESN------KVLSSKDIVSKSE---------------------------DPIALKAI 248 (348) Q Consensus 209 ~gl~~~y~~l~~~----~---~~~~~------~~~~~~~~~~~~~---------------------------D~~A~~~~ 248 (348) +.|..+.+...-. . ..... ..+...++..-.. -.+|..+. T Consensus 300 ~YLGElvRlil~~l~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~~~~~~~~~~~~l~~~~~~~s~~d~~~vr~i~~~V~ 379 (917) T 1cza_N 300 MYLGELVRLILVKMAKEGLLFEGRITPELLTRGKFNTSDVSAIEKNKEGLHNAKEILTRLGVEPSDDDCVSVQHVCTIVS 379 (917) T ss_dssp HHHHHHHHHHHHHHHHTTSSGGGCCCTTTTSTTSSCHHHHHHHTCTTTHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 02999999999999870345677788877278875706899875599128899999986499989999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHC-----C--CCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHH Q ss_conf 9999999999999999748-----9--97389965677655677276489999883798378897388799957872277 Q gi|254780280|r 249 NLFCEYLGRVAGDLALIFM-----A--RGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIA 321 (348) Q Consensus 249 ~~~~~~lg~~i~~l~~~~~-----p--~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~ 321 (348) .+.++..|.+++-+..... | ...|-+.||+-.+.+ .|.+.+.+. +.+++..-+|.+...+|-..+ T Consensus 380 ~RAA~LvAa~i~ail~~~~~~~~~~~~~~~VavdGSv~~~~P------~f~~~~~~~--l~~l~~~~~v~~~~~~DGSg~ 451 (917) T 1cza_N 380 FRSANLVAATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHP------QYSRRFHKT--LRRLVPDSDVRFLLSESGSGK 451 (917) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEECHHHHHCS------SHHHHHHHH--HHHHCTTEEEEEEECTTCHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEECCC------CHHHHHHHH--HHHHCCCCCEEEEECCCCCHH T ss_conf 999999999999999973213589987669999084201485------889999999--999769984699992787578 Q ss_pred HHHHHH Q ss_conf 599987 Q gi|254780280|r 322 GMVSYI 327 (348) Q Consensus 322 GAa~~~ 327 (348) |||-.| T Consensus 452 GAAl~A 457 (917) T 1cza_N 452 GAAMVT 457 (917) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 899988 No 28 >1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 Probab=99.21 E-value=3.5e-10 Score=79.63 Aligned_cols=259 Identities=14% Similarity=0.052 Sum_probs=124.5 Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEECCCC----CCCHHHHHHHHHHH-CCCCCCCEEEEEEEEEEECCCEEEECCC Q ss_conf 799985751189999877998088999743887----35889999999972-2345655469997304416855642135 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSD----YENLEHAIQEVIYR-KISIRLRSAFLAIATPIGDQKSFTLTNY 89 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~----~~~~~~~i~~~l~~-~~~~~~~~igi~v~Gpv~~~~~~~~~~~ 89 (348) ||+||-||||+++.++| ++..+...+.-+++. .+...+.|.+.+.+ .....+..+.++.+|- .... T Consensus 2 IL~IDgGGTKT~~vl~d-~g~~i~~~~~gg~Np~~~~~~~~~~~i~~~i~~~~~~~~i~~~~~~~aG~-~~~~------- 72 (291) T 1zxo_A 2 ILIADSGSTKTDWCVVL-NGAVIKRLGTKGINPFFQSEEEIQQKLTASLLPQLPEGKFNAVYFYGAGC-TPEK------- 72 (291) T ss_dssp --CEECCTTCEEEEEEC-SSSEEEEEEECCCCTTTSCSTTTTTTTTC-------------CEEECTTC-CTTT------- T ss_pred EEEEEECHHHEEEEEEE-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC-CCCH------- T ss_conf 89999452256899994-99689999727788241899999999999999762526987489996002-7511------- Q ss_pred CCCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCEEC Q ss_conf 66669889999828985588212654320000158655353024345576667527993176202245431058863011 Q gi|254780280|r 90 HWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPI 169 (348) Q Consensus 90 ~~~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~g~~~~ 169 (348) ........+.+.+...++.+.||..+..++.. . ....+++..|||..+..... .+...- T Consensus 73 ~~~~~~~~l~~~~~~~~~~v~~D~~~a~~~~~-----------------~--~~~Giv~I~GTGS~~~~~~~--~g~~~r 131 (291) T 1zxo_A 73 APVLRRAIADSLPVIGNIKANSDMLAAAHGLC-----------------G--QKAGIACILGTGSNSCFYNG--KEIVSN 131 (291) T ss_dssp THHHHHHHHHHSCCCSCCEEECSHHHHHHHTT-----------------T--TSCBEEEEESSSEEEEEECS--SSEEEE T ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHC-----------------C--CCCEEEEECCCCCEEEEEEC--CCCEEE T ss_conf 57899999987468855999758489999733-----------------6--99859998588831699928--986898 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHH-HHH-------HH-HCCCCC-C--CCCCHHHHHH Q ss_conf 3567866667661023478999985318986487752222389999-999-------87-408886-4--3698889988 Q gi|254780280|r 170 SCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIY-KAL-------CI-ADGFES-N--KVLSSKDIVS 237 (348) Q Consensus 170 agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y-~~l-------~~-~~~~~~-~--~~~~~~~~~~ 237 (348) .|-+||..-..-+.-. --.+.++....... ++.+.... +++ .. ....+. . ...-+..+++ T Consensus 132 ~GGwG~~lGDeGSG~~-iG~~al~~~l~~~d-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~A~~a~~v~~ 203 (291) T 1zxo_A 132 ISPLGFILGDEGSGAV-LGKLLVGDILKNQL-------PATLKEEFLKQFDLTPPEIIDRVYRQPFPNRFLASLSPFIAQ 203 (291) T ss_dssp CCCCCTTTSCCSSHHH-HHHHHHHHGGGTCS-------CSHHHHHHHHHHTCCHHHHGGGTTTSSCSTTTSSTTTHHHHT T ss_pred ECCCCCCCCCCCCHHH-HHHHHHHHHHHHHC-------CHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 1588866689864999-99999999997357-------713789999997899678789998635972110224699886 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECC Q ss_conf 368957999999999999999999999748997-3899656776556772764899998837983788973887999578 Q gi|254780280|r 238 KSEDPIALKAINLFCEYLGRVAGDLALIFMARG-GVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNP 316 (348) Q Consensus 238 ~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~-~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~ 316 (348) .++|+.+.+++++.+..+... ++..++... -|++.|||+..+.++| ++.+.+ ..+++..-. T Consensus 204 ~~~~~~a~~ii~~~~~~~~~~---~~~~~~~~~~pv~~~Gsva~~~~~~L-----~~~l~~----------~~i~~~~i~ 265 (291) T 1zxo_A 204 HLEEPAIRQLVMNSFIAFFRR---NVMQYDYKQYPVHFIGSIAYCYKEIL-----QDAARQ----------TGIQIGKIL 265 (291) T ss_dssp TTTSTTTTHHHHHHHHHHHTT---TGGGSCTTTSCEEECSHHHHHTHHHH-----HHHTTT----------TTCCEEEEC T ss_pred CCCCHHHHHHHHHHHHHHHHH---HHHHCCCCCCEEEEECCHHHHHHHHH-----HHHHHH----------CCCEEEEEC T ss_conf 169889999999999999999---99854789971999917589999999-----999998----------699871124 Q ss_pred CCHHHHHHHHHHC Q ss_conf 7227759998738 Q gi|254780280|r 317 YIAIAGMVSYIKM 329 (348) Q Consensus 317 ~agl~GAa~~~r~ 329 (348) ..++.|...|.++ T Consensus 266 ~~Pi~gl~~yh~~ 278 (291) T 1zxo_A 266 QSPMEGLIQYHSQ 278 (291) T ss_dssp SCTHHHHHTTSSS T ss_pred CCHHHHHHHHHHH T ss_conf 6747999999998 No 29 >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Probab=98.98 E-value=1e-07 Score=64.41 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=55.0 Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCC-CCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCC Q ss_conf 6773799985751189999877998088999743887-358899999999722345655469997304416855642135 Q gi|254780280|r 11 IAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSD-YENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNY 89 (348) Q Consensus 11 ~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~-~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~ 89 (348) |.|=+|+||+|+|++++.++|+ ++++......++.. ..+....+.+.+.+..........++..|. + T Consensus 1 m~m~~lGID~GsT~tk~vv~de-~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~tg~---g-------- 68 (270) T 1hux_A 1 MSIYTLGIDVGSTASKCIILKD-GKEIVAKSLVAVGTGTSGPARSISEVLENAHMKKEDMAFTLATGY---G-------- 68 (270) T ss_dssp -CCEEEEEEECSSEEEEEEEET-TTEEEEEEEEECCSSCCHHHHHHHHHHHHHTCCGGGCSEEEEEST---T-------- T ss_pred CCCEEEEEEECHHHEEEEEEEC-CCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC---H-------- T ss_conf 9828999994813699999968-994999999735898478999999999970587554258973476---1-------- Q ss_pred CCCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCC Q ss_conf 6666988999982898558821265432000015 Q gi|254780280|r 90 HWVIDPEELISRMQFEDVLLINDFEAQALAICSL 123 (348) Q Consensus 90 ~~~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~ 123 (348) .... ...+...+|...|.+++...+ T Consensus 69 -~~~~--------~~~~~~~v~E~~a~~~ga~~l 93 (270) T 1hux_A 69 -RNSL--------EGIADKQMSELSCHAMGASFI 93 (270) T ss_dssp -TTTT--------TTTCSEEECHHHHHHHHHHHH T ss_pred -HHHH--------HHHCCCCCCEEEHHHHHHHHH T ss_conf -8777--------760568854500999999986 No 30 >3p4i_A Acetate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, no pathogenic species; 2.35A {Mycobacterium avium} Probab=98.75 E-value=4.4e-06 Score=54.35 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=44.7 Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH Q ss_conf 888998836895799999999999999999999974899738996567765 Q gi|254780280|r 231 SSKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYK 281 (348) Q Consensus 231 ~~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~ 281 (348) ...+...+.+|+.|+.++|.|+..++..|+.++..+.--|+||+.|||.+. T Consensus 278 rev~~~~~~gd~~A~la~d~~~y~i~K~IGa~aa~LG~vDaIVfTGGIge~ 328 (392) T 3p4i_A 278 RRLRELIESGDGAAQLAYSVFTHRLRKYIGAYLAVLGHTDVISFTAGIGEN 328 (392) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEEEHHHHTT T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 899998868898899999999999999999999973799989987841236 No 31 >1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* Probab=98.56 E-value=1.9e-05 Score=50.46 Aligned_cols=297 Identities=14% Similarity=0.122 Sum_probs=143.9 Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEEEECC-----CCC----CCH---HHHHHHHHHHCCCCCCCEE--EEEEEE- Q ss_conf 7737999857511899998779980889997438-----873----588---9999999972234565546--999730- Q gi|254780280|r 12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQT-----SDY----ENL---EHAIQEVIYRKISIRLRSA--FLAIAT- 76 (348) Q Consensus 12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t-----~~~----~~~---~~~i~~~l~~~~~~~~~~i--gi~v~G- 76 (348) +|+||+|.-|-|.+|+++++.+ ..+ ....... ..+ +++ .+++.+++.+. ...+..+ -++-.| T Consensus 1 m~kILvIN~GSSS~K~alf~~~-~~~-~~~~i~h~~~~~~~~~~~~d~~~~r~~~i~~~L~~~-g~~l~~v~~rvv~GG~ 77 (381) T 1saz_A 1 MFRILTINPGSTSTKLSIFEDE-RMV-KMQNFSHSPDELGRFQKILDQLEFREKIARQFVEET-GYSLSSFSAFVSRGGL 77 (381) T ss_dssp CCEEEEEEECSSEEEEEEEETT-EEE-EEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTT-TCCGGGCSEEEEECCS T ss_pred CCEEEEECCCCHHHEEEEEECC-CCE-EECEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCEEEEECCC T ss_conf 9749998578175623789388-612-344214321010444530105889999999999876-9983514779980898 Q ss_pred --EEECCCEEE----------ECCCCCCCCHH-----HHHHHHCCCCEEEEC-------HHHHHHHHHCCCC-------- Q ss_conf --441685564----------21356666988-----999982898558821-------2654320000158-------- Q gi|254780280|r 77 --PIGDQKSFT----------LTNYHWVIDPE-----ELISRMQFEDVLLIN-------DFEAQALAICSLS-------- 124 (348) Q Consensus 77 --pv~~~~~~~----------~~~~~~~~~~~-----~l~~~~~~~~v~i~N-------D~~a~a~~~~~~~-------- 124 (348) |+..+.... ...+...-+.. ++... ...|+.+.. +-.|.-|+.+... T Consensus 78 ~~~~~~g~~~v~~~~l~~l~~~apl~~~~nl~~i~a~~~~~~-~~~p~~vfDtafh~~mp~~Ar~yglP~~~RrygFHGl 156 (381) T 1saz_A 78 LDPIPGGVYLVDGLMIKTLKSGKNGEHASNLGAIIAHRFSSE-TGVPAYVVDPVVVDEMEDVARVSGHPNYQRKSIFHAL 156 (381) T ss_dssp CSCBCSSEEECCHHHHHHHHHTTTCCCTTHHHHHHHHHHHHH-HCCCEEEESCTTBCCCCGGGTBCSSTTCBCCCCSCHH T ss_pred CCCCCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC-CCCCEEEECCCCCCCCCHHHHHCCCCCEEEEECCCCC T ss_conf 765069718767999999874678777014899999998578-9997588688131358688886679875676544354 Q ss_pred HHHHHHHCC-CCCCCCCCCCCEEEECCCCEEEEEEEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--C Q ss_conf 655353024-345576667527993176202245431058--86301135678666676610234789999853189--8 Q gi|254780280|r 125 CSNYVSIGQ-FVEDNRSLFSSRVIVGPGTGLGISSVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEG--R 199 (348) Q Consensus 125 ~~~~~~lg~-~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~--~ 199 (348) ....+.-.- ...+......++++.=.|.|.-++.+-+++ +-..++.+|+--++- =.+..+...+-++ |..++ . T Consensus 157 S~~~va~~~a~~lgk~~~~~nlIv~HLG~G~Si~Ai~~GksvDtsmG~tpeGl~m~t-RsG~ldp~~l~~l-~~~~~~s~ 234 (381) T 1saz_A 157 NQKTVAKEVARMMNKRYEEMNLVVAHMGGGISIAAHRKGRVIDVNNALDGDGPFTPE-RSGTLPLTQLVDL-CFSGKFTY 234 (381) T ss_dssp HHHHHHHHHHHHTTCCGGGCEEEEEEESSSEEEEEEETTEEEEECCGGGTCSSCCSS-CCCSCCHHHHHHH-HTSSCCCT T ss_pred HHHHHHHHHHHHHCCCHHHCEEEEEEECCCCEEEHHHCCEEEECCCCCCCCCCCCCC-CCCCCCHHHHHHH-HHHCCCCH T ss_conf 399999999999688978871899995698355733288615608876888786887-6789887999999-98669999 Q ss_pred CCHHHHHCC-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEECH Q ss_conf 648775222-23899999998740888643698889988368957999999999999999999999748-9973899656 Q gi|254780280|r 200 LSAENLLSG-KGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFM-ARGGVYISGG 277 (348) Q Consensus 200 ~~~E~~~SG-~gl~~~y~~l~~~~~~~~~~~~~~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~-p~~~IvlgGG 277 (348) -.++..+.+ .||... .+.. .....+..+++||+.|+.+++.|+..++..|+.++..+. .-|.||+.|| T Consensus 235 ~e~~~~Ln~~sGL~g~-------sGts---D~Rev~~~~~~Gd~~A~LA~d~~~y~i~K~IGa~aa~L~G~vDaIVfTGG 304 (381) T 1saz_A 235 EEMKKRIVGNGGLVAY-------LGTS---DAREVVRRIKQGDEWAKRVYRAMAYQIAKWIGKMAAVLKGEVDFIVLTGG 304 (381) T ss_dssp TGGGSTTTTSCTHHHH-------HSCC---CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSEEEEEEG T ss_pred HHHHHHHHCCCCCCCC-------CCCC---CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 9999998356662211-------6887---59999999888799899999999999999999999972997788998670 Q ss_pred HHHHHHHHHCCHHHHHHHHHCCCHHHHHHHC-CEEEEE--CCC-CHHHHHHHHHHCCCCCCCC Q ss_conf 7765567727648999988379837889738-879995--787-2277599987380012444 Q gi|254780280|r 278 IPYKIIDLLRNSSFRESFENKSPHKELMRQI-PTYVIT--NPY-IAIAGMVSYIKMTDCFNLF 336 (348) Q Consensus 278 i~~~~~~~l~~~~f~~~f~~~~~~~~~l~~i-pv~~~~--~~~-agl~GAa~~~r~~~~~~~~ 336 (348) |..+. ++ .++...+ .++-+ ||.+.- ++. +=-.||...++..+..+.+ T Consensus 305 Igens-~~-----lr~~I~~------~l~~lgpV~v~Pg~~E~~alA~~~lrvl~g~e~~k~y 355 (381) T 1saz_A 305 LAHEK-EF-----LVPWITK------RVSFIAPVLVFPGSNEEKALALSALRVLRGEEKPKNY 355 (381) T ss_dssp GGGCT-TT-----HHHHHHH------HHTTTSCEEEEEBCCHHHHHHHHHHHHHTTSSCCEEH T ss_pred CCCCC-HH-----HHHHHHH------HCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHCC T ss_conf 21586-99-----9999997------4664030899779788999999899986697100004 No 32 >2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima} Probab=98.48 E-value=2.6e-05 Score=49.59 Aligned_cols=50 Identities=8% Similarity=0.135 Sum_probs=43.8 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH Q ss_conf 88998836895799999999999999999999974899738996567765 Q gi|254780280|r 232 SKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYK 281 (348) Q Consensus 232 ~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~ 281 (348) ..+..+++||+.|+.+++.|+..++..|+.++..+.--|.||+.|||.+. T Consensus 286 ev~~~~~~Gd~~A~lA~d~f~yri~k~IGa~aa~LgGvDaIVfTGGIgen 335 (403) T 2iir_A 286 DIEEAALKGDEWCKLVLEIYDYRIAKYIGAYAAAMNGVDAIVFTAGVGEN 335 (403) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEHHHHTT T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 99998877899899999999999999999999875799899987832358 No 33 >1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A* Probab=98.46 E-value=4.6e-05 Score=48.06 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=63.4 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHH--------- Q ss_conf 88998836895799999999999999999999974899738996567765567727648999988379837--------- Q gi|254780280|r 232 SKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHK--------- 302 (348) Q Consensus 232 ~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~--------- 302 (348) ..+...+++|+.|+.+++.|+..+...|+.++..+.--|.||+.|||.... + ..|++..++..+- T Consensus 286 ~l~~~~~~gd~~A~la~d~~~y~i~k~Iga~aa~LgGvDaiVfTGGIge~s-~-----~vR~~i~~~l~~lGi~lD~~~N 359 (408) T 1g99_A 286 DLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNGADAVVFTAGIGENS-A-----SIRKRILTGLDGIGIKIDDEKN 359 (408) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEEEHHHHHHC-H-----HHHHHHHTTCGGGTCCBCTTGG T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-H-----HHHHHHHHHHHHCCEEECHHHH T ss_conf 999998778998999999999999999999998758999899878402488-9-----9999998531241726768886 Q ss_pred -------HH---HHHCCEEEE-ECCCCH-HHHHHHHHHCCCCCCCCCC Q ss_conf -------88---973887999-578722-7759998738001244457 Q gi|254780280|r 303 -------EL---MRQIPTYVI-TNPYIA-IAGMVSYIKMTDCFNLFIS 338 (348) Q Consensus 303 -------~~---l~~ipv~~~-~~~~ag-l~GAa~~~r~~~~~~~~~~ 338 (348) .+ -.++||+++ ++|+.- -..+..+++...+-..++| T Consensus 360 ~~~~~~~~is~~~s~v~v~vi~t~Ee~~iA~~~~~~l~~~~~~~~~~~ 407 (408) T 1g99_A 360 KIRGQEIDISTPDAKVRVFVIPTNEELAIARETKEIVETEVKLRSSIP 407 (408) T ss_dssp GCCSSCEECBCTTCSSEEEECCCCHHHHHHHHHHHHHHC--------- T ss_pred HCCCCCCEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 257877443389998429997797799999999999973726667799 No 34 >3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp} Probab=98.38 E-value=7.2e-05 Score=46.83 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=43.6 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH Q ss_conf 88998836895799999999999999999999974899738996567765 Q gi|254780280|r 232 SKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYK 281 (348) Q Consensus 232 ~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~ 281 (348) ..+...+++|+.|+.++|.|+..++..|+.++..++--|.||+.|||.+. T Consensus 277 ev~~~~~~gd~~A~la~d~~~yqi~k~IGa~aa~lggvDaIVfTGGIgen 326 (384) T 3khy_A 277 EVSQLAAKGDSLAKLAIEIFSHRVAKFVASYMIYFNKLDALVFTGGIGEN 326 (384) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHGGGCSSCCEEEEEHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 99998867999999999999999999999999973899999986710358 No 35 >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 2i7p_A* 3mk6_A* Probab=98.17 E-value=5.8e-05 Score=47.42 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=46.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHH--HHHHHHCCCHHHHHHHCC-EEEEECCC Q ss_conf 957999999999999999999999748997389965677655677276489--999883798378897388-79995787 Q gi|254780280|r 241 DPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSF--RESFENKSPHKELMRQIP-TYVITNPY 317 (348) Q Consensus 241 D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f--~~~f~~~~~~~~~l~~ip-v~~~~~~~ 317 (348) .-+|..++...++.+++.+.-.+..++-.. ||++|++++.. ++.. ..+ ...|..+ .++. +++-..+. T Consensus 279 eDia~Sll~mV~~nIg~ia~l~A~~~~i~~-Ivf~G~~~~n~-~~~~-~~ls~a~~~~s~-------~~~~~~F~~~~gy 348 (360) T 2i7n_A 279 EDLARATLVTITNNIGSIARMCALNENIDR-VVFVGNFLRIN-MVSM-KLLAYAMDFWSK-------GQLKALFLEHEGY 348 (360) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-EEEESGGGCSS-SHHH-HHHHHHHHHHTT-------TSCCEEEETTTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEECCHHCCC-HHHH-HHHHHHHHHHCC-------CCEEEEECCCCCH T ss_conf 889999999999999999999999809998-99978211373-9899-999999997344-------8817995377224 Q ss_pred CHHHHHHH Q ss_conf 22775999 Q gi|254780280|r 318 IAIAGMVS 325 (348) Q Consensus 318 agl~GAa~ 325 (348) +|-+||.- T Consensus 349 ~galGA~l 356 (360) T 2i7n_A 349 FGAVGALL 356 (360) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 07999999 No 36 >2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A* Probab=98.09 E-value=0.00045 Score=41.94 Aligned_cols=135 Identities=19% Similarity=0.190 Sum_probs=71.9 Q ss_pred CCCCCCCEEEECCCCEEEEEEEECCC--CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHCC-HHHHH Q ss_conf 76667527993176202245431058--8630113567866667661023478999985318-98648775222-23899 Q gi|254780280|r 138 NRSLFSSRVIVGPGTGLGISSVIRAK--DSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAE-GRLSAENLLSG-KGLVN 213 (348) Q Consensus 138 ~~~~~~~~~~ig~GtG~g~~~~~~~~--~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g-~~~~~E~~~SG-~gl~~ 213 (348) ......++++.=.|.|.-++.+-+++ +-..++..--|-+.-.=.+..+...+-++....+ ..--++..+.+ .||. T Consensus 205 k~~~~~~lIv~HLG~G~Si~A~~~GrsvDtsmG~tpleGl~m~tRsG~ldp~~l~~l~~~~~~s~~e~~~~L~~~sGL~- 283 (415) T 2e1z_A 205 LDEKDSGLIVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLL- 283 (415) T ss_dssp CCTTSCEEEEEEESSSEEEEEEETTEEEEESCCSSTTSSSCCSSCCCSCCHHHHHHHHHHHCCCHHHHHHHHHHSCHHH- T ss_pred CCHHHCCEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCE- T ss_conf 9967877899996799464677788568638887876778579989998818999999871999999999851456506- Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH Q ss_conf 99999874088864369888998836895799999999999999999999974899738996567765 Q gi|254780280|r 214 IYKALCIADGFESNKVLSSKDIVSKSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYK 281 (348) Q Consensus 214 ~y~~l~~~~~~~~~~~~~~~~~~~~~~D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~ 281 (348) ...+.. ......+...++||+.|+.++|.|+..+...|+.++..+.--|.||+.|||.+. T Consensus 284 ------g~sG~s--~D~R~l~~~~~~gd~~A~la~d~f~y~i~k~IGa~aa~LggvDaiVfTGGige~ 343 (415) T 2e1z_A 284 ------GISGLS--SDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGEN 343 (415) T ss_dssp ------HHHSSC--SCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSSCCEEEEEHHHHHH T ss_pred ------EEECCC--CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC T ss_conf ------875787--419999999978799999999999999999999999987899999987730358 No 37 >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Probab=98.01 E-value=0.00017 Score=44.59 Aligned_cols=235 Identities=15% Similarity=0.200 Sum_probs=113.0 Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHH---HHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCCC Q ss_conf 79998575118999987799808899974388735889999---999972234565546999730441685564213566 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAI---QEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHW 91 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i---~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~~ 91 (348) +|.||||-|+|++|+++. +++....+.++....+.++.. ..++.. ...++..+.++.-.|-.+. T Consensus 5 ~L~iDiGNT~ik~~l~~~--~~~~~~~~~~t~~~~~~de~~~~l~~~~~~-~~~~i~~v~isSVvp~~~~---------- 71 (249) T 3bex_A 5 YLLVDVGNTHSVFSITED--GKTFRRWRLSTGVFQTEDELFSHLHPLLGD-AMREIKGIGVASVVPTQNT---------- 71 (249) T ss_dssp EEEEEECSSEEEEEEESS--SSSCEEEEEECCTTCCHHHHHHHHHHHHGG-GGGGEEEEEEEESCHHHHH---------- T ss_pred EEEEEECCCCEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHH-HHHHCCEEEEEEECCCHHH---------- T ss_conf 999999766028999989--999999996078767879999999998534-4543220244354260689---------- Q ss_pred CCCHHHHHHHHCCCCEEEECHHH--HHHHHHC-CCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCEE Q ss_conf 66988999982898558821265--4320000-15865535302434557666752799317620224543105886301 Q gi|254780280|r 92 VIDPEELISRMQFEDVLLINDFE--AQALAIC-SLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIP 168 (348) Q Consensus 92 ~~~~~~l~~~~~~~~v~i~ND~~--a~a~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~g~~~ 168 (348) ....-+.+.+...++.+..+.. -..|-.+ .++..++..+-.+... ...+.+++-.||.+-+-.+-+. . T Consensus 72 -~l~~~~~~~~~~~~~~~~~~~~~l~~~y~~p~~LG~DR~~~~~aA~~~---~~~~~iVVD~GTA~TiD~v~~~--~--- 142 (249) T 3bex_A 72 -VIERFSQKYFHISPIWVKAKNGCVKWNVKNPSEVGADRVANVVAFVKE---YGKNGIIIDMGTATTVDLVVNG--S--- 142 (249) T ss_dssp -HHHHHHHHHHSCCCEECCCCSSSSEECSSCGGGSCHHHHHHHHHHHHH---TCSCEEEEEESSEEEEEEEETT--E--- T ss_pred -HHHHHHHHCCCCCEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHH---CCCCEEEEECCCCEEEEEECCC--C--- T ss_conf -999999853586338843667776150588777479999999999975---5981899974873189996168--6--- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHH-HHH-HHCCCHHHHH Q ss_conf 13567866667661023478999985318986487752222389999999874088864369888-998-8368957999 Q gi|254780280|r 169 ISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSK-DIV-SKSEDPIALK 246 (348) Q Consensus 169 ~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~-~~~-~~~~D~~A~~ 246 (348) -.+|.+. +|+.-.++.|......-+....... ... ....|....- T Consensus 143 --~~GG~I~-------------------------------PG~~l~~~aL~~~Ta~Lp~~~~~~~~~~~g~~T~~ai~sG 189 (249) T 3bex_A 143 --YEGGAIL-------------------------------PGFFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLG 189 (249) T ss_dssp --EEEEEEE-------------------------------ECHHHHHHHHHHTCSSCCCCCCCCCCSSSBSSHHHHHHHH T ss_pred --EEEEEEC-------------------------------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf --8889988-------------------------------7888999999987543666566776424575638999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHHHHHH Q ss_conf 99999999999999999974899738996567765567727648999988379837889738879995787227759998 Q gi|254780280|r 247 AINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAGMVSY 326 (348) Q Consensus 247 ~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~GAa~~ 326 (348) ++.-+...+-..+..+...+.... |+|.||-+..+.+.+.. ++ .+++.-|.|-++| T Consensus 190 v~~g~~~~i~~~i~~~~~~~~~~~-vilTGG~a~~l~~~l~~--------------------~~---~~~~Lvl~GL~~~ 245 (249) T 3bex_A 190 VVNGSVYALEGIIGRIKEVYGDLP-VVLTGGQSKIVKDMIKH--------------------EI---FDEDLTIKGVYHF 245 (249) T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC-EEEESTTSGGGGGGSCC--------------------SE---ECTTHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHCCC--------------------CE---ECCCHHHHHHHHH T ss_conf 999999999999999999839996-99986879998610788--------------------88---9858199999999 Q ss_pred HH Q ss_conf 73 Q gi|254780280|r 327 IK 328 (348) Q Consensus 327 ~r 328 (348) +. T Consensus 246 ~~ 247 (249) T 3bex_A 246 CF 247 (249) T ss_dssp HH T ss_pred HC T ss_conf 75 No 38 >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Probab=97.76 E-value=0.00029 Score=43.14 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=45.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHH Q ss_conf 57999999999999999999999748997389965677655677276489999883798378897388799957872277 Q gi|254780280|r 242 PIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIA 321 (348) Q Consensus 242 ~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~ 321 (348) ...+.+++-.+..+...+..+.-.-.+..-|++.||.+++ +.++|-+ .+.+ +.||.+....+++.+ T Consensus 367 ~~~rAvlEgia~~~~~~~~~l~~~~~~~~~I~~~GG~a~s-------~~~~Qi~------Adv~-g~pV~~~~~~e~~al 432 (504) T 3ll3_A 367 EMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKS-------DFVRQLC------ANIF-NVPIVTMKEQQSGTL 432 (504) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCS-------HHHHHHH------HHHH-TSCEEEESCSCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHH-------HHHHHHH------HHHH-CCEEEECCCCCHHHH T ss_conf 9999999999999999999999738997489997942246-------9999999------9988-990796788847999 Q ss_pred HHHHHHHCCCC Q ss_conf 59998738001 Q gi|254780280|r 322 GMVSYIKMTDC 332 (348) Q Consensus 322 GAa~~~r~~~~ 332 (348) |||.++..-.. T Consensus 433 GaA~lA~~a~g 443 (504) T 3ll3_A 433 AAMFLARQALG 443 (504) T ss_dssp HHHHHHHHHTT T ss_pred HHHHHHHHHCC T ss_conf 99999999769 No 39 >3h1q_A Ethanolamine utilization protein EUTJ; structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-2901} Probab=97.63 E-value=0.0027 Score=37.11 Aligned_cols=97 Identities=19% Similarity=0.162 Sum_probs=61.8 Q ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEEEECCC--------CCCCHHHHHHHHHHH---CCCCCCCEEEEEEEEEEECCC Q ss_conf 379998575118999987799808899974388--------735889999999972---234565546999730441685 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQTS--------DYENLEHAIQEVIYR---KISIRLRSAFLAIATPIGDQK 82 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~--------~~~~~~~~i~~~l~~---~~~~~~~~igi~v~Gpv~~~~ 82 (348) ..++||+|-||+.+.+.+. .+.+......+.+ ||+...++|++++++ .....+..+.|++|.-..... T Consensus 29 ~~vgIDlGTt~~~v~v~~~-~~~~~~~~~~~~~~l~~GvI~d~~~a~~~l~~l~~~ae~~~g~~i~~~vi~VP~~~t~~~ 107 (272) T 3h1q_A 29 YKVGVDLGTADIVLVVTDQ-EGIPVAGALKWASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRN 107 (272) T ss_dssp CEEEEECCSSEEEEEEECT-TCCEEEEEEEECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---C T ss_pred CEEEEECCCCCEEEEEECC-CCCEEEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH T ss_conf 6799988998589999999-998897754444478788796589999999999999998749988868999899899899 Q ss_pred EEEECCCCCCCCHHHHHHHHCCCCEEEECHHHHHHHHH Q ss_conf 56421356666988999982898558821265432000 Q gi|254780280|r 83 SFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAI 120 (348) Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~v~i~ND~~a~a~~~ 120 (348) +-...+..+..+.+.+.++|+-.|++++. T Consensus 108 ---------r~ai~~aa~~AGl~~~~li~Ep~AAA~~~ 136 (272) T 3h1q_A 108 ---------AEACGHVVAGAGLELVTLVDEPVAAARAL 136 (272) T ss_dssp ---------TTHHHHHHHHTTCEEEEEECHHHHHHHHH T ss_pred ---------HHHHHHHHHHCCCCEEECCCCHHHHHHHH T ss_conf ---------99999999985997662127789999876 No 40 >2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Probab=97.62 E-value=0.0028 Score=37.00 Aligned_cols=246 Identities=13% Similarity=0.134 Sum_probs=110.5 Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCH---HHHHHHHHHHCC--CCCCCEEEEEEEEEEECCCEEEECCC Q ss_conf 7999857511899998779980889997438873588---999999997223--45655469997304416855642135 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENL---EHAIQEVIYRKI--SIRLRSAFLAIATPIGDQKSFTLTNY 89 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~---~~~i~~~l~~~~--~~~~~~igi~v~Gpv~~~~~~~~~~~ 89 (348) +|+||||=|++++|+++ ++.+....+.++...... ...+++++.... ...+..+.+++..|-... T Consensus 2 ~L~IDiGNT~iK~~l~~--~~~~~~~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~i~ssv~~~~~~-------- 71 (268) T 2h3g_X 2 IFVLDVGNTNAVLGVFE--EGELRQHWRMETDRHKTEDEYGMLVKQLLEHEGLSFEDVKGIIVSSVVPPIMF-------- 71 (268) T ss_dssp EEEEEECSSEEEEEEEE--TTEEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCHHHHH-------- T ss_pred EEEEEECCCCCEEEEEE--CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH-------- T ss_conf 89999887710899998--99999999984587667789999999998765997343213798246876899-------- Q ss_pred CCCCCHHHHHHHHCCCCEEEEC-HHHH---HHHHHC-CCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCC Q ss_conf 6666988999982898558821-2654---320000-1586553530243455766675279931762022454310588 Q gi|254780280|r 90 HWVIDPEELISRMQFEDVLLIN-DFEA---QALAIC-SLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKD 164 (348) Q Consensus 90 ~~~~~~~~l~~~~~~~~v~i~N-D~~a---~a~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~ 164 (348) ............+..+.+ +... ..|..+ .++..++..+-.+... ...+++++-.||-+-+-.+... T Consensus 72 ----~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~LG~DR~~a~~aA~~~---~~~~~iVID~GTAiTiD~v~~~-- 142 (268) T 2h3g_X 72 ----ALERMCEKYFKIKPLVVGPGIKTGLNIKYENPREVGADRIVNAVAGIHL---YGSPLIIVDFGTATTYCYINEE-- 142 (268) T ss_dssp ----HHHHHHHHHTCCCCEECSTTCCCCCEECSSCGGGSCHHHHHHHHHHHHH---HCSSEEEEEESSEEEEEEECTT-- T ss_pred ----HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHH---CCCCEEEEECCCCEEEEEECCC-- T ss_conf ----9999999745874299655446796444689676448999999999861---6998899985862132011357-- Q ss_pred CCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHH Q ss_conf 63011356786666766102347899998531898648775222238999999987408886436988899883689579 Q gi|254780280|r 165 SWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIA 244 (348) Q Consensus 165 g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~~~~~D~~A 244 (348) |.+ .+|.+. |... -..+.+.++++... ......+.... .....+... T Consensus 143 g~~----lGG~I~--PGl~----------------l~~~sL~~~Ta~Lp------~~~~~~~~~~~-----g~nT~~ai~ 189 (268) T 2h3g_X 143 KHY----MGGVIT--PGIM----------------ISAEALYSRAAKLP------RIEITKPSSVV-----GKNTVSAMQ 189 (268) T ss_dssp SEE----EEEEEE--ECHH----------------HHHHHHHC-------------CCCCCCSCSS-----CSSHHHHHH T ss_pred CCE----EEEEEC--CHHH----------------HHHHHHHHHHHCCC------CCCCCCCCCCC-----CCCCHHHHH T ss_conf 857----889988--6299----------------99999998785388------77656776445-----777066799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHHHH Q ss_conf 99999999999999999999748997389965677655677276489999883798378897388799957872277599 Q gi|254780280|r 245 LKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAGMV 324 (348) Q Consensus 245 ~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~GAa 324 (348) .-++.-+...+-..+..+.--+..+--||+.||-+..+.+.+.. + ...+++.-|.|-. T Consensus 190 sG~~~g~~~~I~~~i~~~~~~~~~~~~vilTGGda~~l~~~l~~--------------------~--~~~~~~Lvl~GL~ 247 (268) T 2h3g_X 190 SGILYGYVGQVEGIVKRMKEEAKQEPKVIATGGLAKLISEESNV--------------------I--DVVDPFLTLKGLY 247 (268) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCCEEEEESTTHHHHHHHCSS--------------------C--SEECTTHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC--------------------C--CEECCCHHHHHHH T ss_conf 99999999999999999999878998799989977998763699--------------------7--7899387999999 Q ss_pred HHH-HCCCCCC Q ss_conf 987-3800124 Q gi|254780280|r 325 SYI-KMTDCFN 334 (348) Q Consensus 325 ~~~-r~~~~~~ 334 (348) .++ ++++.++ T Consensus 248 ~i~~~N~~~~~ 258 (268) T 2h3g_X 248 MLYERNANLQH 258 (268) T ss_dssp HHHHHTC---- T ss_pred HHHHHCCHHHH T ss_conf 99996600433 No 41 >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Probab=97.57 E-value=0.00067 Score=40.86 Aligned_cols=71 Identities=7% Similarity=0.030 Sum_probs=40.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHH Q ss_conf 79999999999999999999997--4899738996567765567727648999988379837889738879995787227 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALI--FMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAI 320 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~--~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl 320 (348) .++.+++-.+..+...+-.+.-. ..++ -|++.||.+++ +.++|-+ .+.+ ..||++....+++. T Consensus 378 l~ra~~Egia~~~~~~~~~~~~~~g~~~~-~i~~~GG~s~s-------~~~~Qi~------Adv~-g~pV~~~~~~ea~a 442 (501) T 3g25_A 378 FIRATLESLCYQTRDVMEAMSKDSGIDVQ-SLRVDGGAVKN-------NFIMQFQ------ADIV-NTSVERPEIQETTA 442 (501) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCS-EEEEESGGGGC-------HHHHHHH------HHHH-TSEEEEESCCCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCHHC-------HHHHHHH------HHHH-CCEEEECCCCCHHH T ss_conf 99999986689999999999986398988-89998960238-------9999999------9997-98579679885689 Q ss_pred HHHHHHHH Q ss_conf 75999873 Q gi|254780280|r 321 AGMVSYIK 328 (348) Q Consensus 321 ~GAa~~~r 328 (348) +|||.++. T Consensus 443 lGaA~la~ 450 (501) T 3g25_A 443 LGAAFLAG 450 (501) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 42 >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Probab=97.56 E-value=0.00064 Score=40.98 Aligned_cols=63 Identities=11% Similarity=-0.067 Sum_probs=38.3 Q ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEEEECCC-----CCCCHHHHHHHHHHHCC-CCCCCEEEEEEEE Q ss_conf 379998575118999987799808899974388-----73588999999997223-4565546999730 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQTS-----DYENLEHAIQEVIYRKI-SIRLRSAFLAIAT 76 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~-----~~~~~~~~i~~~l~~~~-~~~~~~igi~v~G 76 (348) -||+||+|-|++|+.++|.+.+++....+.+.. |.+.+.+.+.+.+++.. ..++.+|+|+.-+ T Consensus 6 lv~GiD~GTss~Ka~l~d~~~g~i~~~~~~~~p~~~eqd~~~~~~~~~~~~~~~~~~~~I~aIgit~q~ 74 (515) T 3i8b_A 6 LVAGVDTSTQSCKVRVTDAETGELVRFGQAKHPNGTSVDPSYWWSAFQEAAEQAGGLDDVSALAVGGQQ 74 (515) T ss_dssp EEEEEEECSSEEEEEEEETTTCCEEEEEEEECCSSSEECTHHHHHHHHHHHHHTTCSTTEEEEEEEECS T ss_pred EEEEEEECHHCEEEEEEECCCCEEEEEEECCCCCCEEECHHHHHHHHHHHHHHCCCHHCCEEEEEECCC T ss_conf 899998600021637898999979999962498988899999999999999962773134699998776 No 43 >2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A* Probab=97.51 E-value=0.004 Score=36.07 Aligned_cols=125 Identities=10% Similarity=0.122 Sum_probs=61.3 Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE-EEEEECCCEEEECCCCCCC Q ss_conf 799985751189999877998088999743887358899999999722345655469997-3044168556421356666 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAI-ATPIGDQKSFTLTNYHWVI 93 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v-~Gpv~~~~~~~~~~~~~~~ 93 (348) +|+||||=|++++|+++. .......+.++.+ +..++.+ .......+..+.++. .+|... .. T Consensus 25 ~L~IDIGNT~iK~~l~~~--~~~~~~~~~~~~~----~~~~~~l-~~~~~~~~~~~~i~sVv~~~~~-----------~~ 86 (271) T 2f9w_A 25 ILELDCGNSLIKWRVIEG--AARSVAGGLAESD----DALVEQL-TSQQALPVRACRLVSVRSEQET-----------SQ 86 (271) T ss_dssp EEEEEECSSCEEEEEEET--TTEEEEEEEESSH----HHHHHHH-HHTTTSCEEEEEEEECSCHHHH-----------HH T ss_pred EEEEEECCCCEEEEEEEC--CEEEEECCCCCCH----HHHHHHH-HHHCCCCCCEEEEEEECCHHHH-----------HH T ss_conf 999997568108999989--9989823326777----8999999-8755899874999983682664-----------78 Q ss_pred CHHHHHHHHCCCCEEEECHHHH----HHHHH-CCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEE Q ss_conf 9889999828985588212654----32000-0158655353024345576667527993176202245431 Q gi|254780280|r 94 DPEELISRMQFEDVLLINDFEA----QALAI-CSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVI 160 (348) Q Consensus 94 ~~~~l~~~~~~~~v~i~ND~~a----~a~~~-~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~ 160 (348) ....+.+.+...++.+.++... ..|-. ..++..++..+-..... ...+++++-.||-+-+-.+- T Consensus 87 l~~~l~~~~~~~~~~~~~~~~~~~l~~~Y~~p~~LG~DR~~a~vaA~~~---~~~~~iVID~GTA~TiD~V~ 155 (271) T 2f9w_A 87 LVARLEQLFPVSALVASSGKQLAGVRNGYLDYQRLGLDRWLALVAAHHL---AKKACLVIDLGTAVTSDLVA 155 (271) T ss_dssp HHHHHHHHSSCCCEECCCCSEETTEECCSSSGGGSCHHHHHHHHHHHHH---HSSCEEEEEESSEEEEEEEC T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCEECCCCHHHCCHHHHHHHHHHHHH---CCCCEEEEECCCCCEEEEEC T ss_conf 9999998679974997067656794253699465476899999999973---59988999658730321442 No 44 >3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Probab=97.49 E-value=0.0011 Score=39.57 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=23.0 Q ss_pred CCCC--EEEEEECCCCEEEEEEECCCCEEEEEEE Q ss_conf 6773--7999857511899998779980889997 Q gi|254780280|r 11 IAFP--VLLADIGGTNVRFAILRSMESEPEFCCT 42 (348) Q Consensus 11 ~~~~--vL~iDIGGT~ir~glv~~~~~~i~~~~~ 42 (348) |.|+ ||+||+|.|++|+.++|.++ ++....+ T Consensus 1 m~~~~YilgID~GTts~Ka~l~d~~g-~~v~~~~ 33 (511) T 3hz6_A 1 MSLAFYIATFDIGTTEVKAALADRDG-GLHFQRS 33 (511) T ss_dssp -CCCCEEEEEEECSSEEEEEEECTTS-CEEEEEE T ss_pred CCCCEEEEEEEECCCCEEEEEEECCC-CEEEEEE T ss_conf 97453799998512021303781889-9999999 No 45 >3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} Probab=97.46 E-value=0.00038 Score=42.35 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=25.4 Q ss_pred CCCC--EEEEEECCCCEEEEEEECCCCEEEEEEEE Q ss_conf 6773--79998575118999987799808899974 Q gi|254780280|r 11 IAFP--VLLADIGGTNVRFAILRSMESEPEFCCTV 43 (348) Q Consensus 11 ~~~~--vL~iDIGGT~ir~glv~~~~~~i~~~~~~ 43 (348) |+|+ +|+||||-|++|..++|.+++++....+. T Consensus 1 m~M~ky~LgIDiGTts~Ka~l~D~~~g~~~~~~~~ 35 (572) T 3jvp_A 1 MSLTKYTIGVDYGTESGRAVLIDLSNGQELADHVT 35 (572) T ss_dssp ----CEEEEEEECSSEEEEEEEETTTCCEEEEEEE T ss_pred CCCCEEEEEEEECCCCEEEEEEECCCCEEEEEEEE T ss_conf 98771799997246552889998899909999998 No 46 >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide- binding, phosphoprotein, polymorphism; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3fzh_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 1ngh_A* 1ngd_A* 1ngf_A* 1bup_A* 1nga_A* ... Probab=97.42 E-value=0.00035 Score=42.61 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.2 Q ss_pred CCCCCEEEEEECCCCEEEEEEECC Q ss_conf 667737999857511899998779 Q gi|254780280|r 10 PIAFPVLLADIGGTNVRFAILRSM 33 (348) Q Consensus 10 ~~~~~vL~iDIGGT~ir~glv~~~ 33 (348) .-+|||++||+|-||+.+++++.. T Consensus 20 ~~~m~viGIDfGTt~s~va~~~~g 43 (404) T 3i33_A 20 FQSMPAIGIDLGTTYSCVGVFQHG 43 (404) T ss_dssp ---CCCEEEEECSSEEEEEEEETT T ss_pred CCCCCEEEEECCCCCEEEEEEECC T ss_conf 689989999928136899999899 No 47 >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain DSM 12444, SGX, transferase, structural genomics; 2.50A {Novosphingobium aromaticivorans DSM12444} Probab=97.41 E-value=0.0013 Score=39.11 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=46.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHHHH Q ss_conf 99999999999999999999748997389965677655677276489999883798378897388799957872277599 Q gi|254780280|r 245 LKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAGMV 324 (348) Q Consensus 245 ~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~GAa 324 (348) .+.......+++..+..+...+.+.+-|++.||.+.+ +.|+|.+ .+.+...||+....+++..+||| T Consensus 364 ~~~~~a~~~~~a~~~~~~l~~~~~~~~i~~~GG~sks-------~~~~Qi~------Advl~g~~V~~~~~~e~talGAA 430 (482) T 3h6e_A 364 FERRAAACLYAALVADTALDLIGSTGRILVEGRFAEA-------DVFVRAL------ASLRPDCAVYTANAHNDVSFGAL 430 (482) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESGGGGC-------HHHHHHH------HHHSTTSEEEEESSCCCTTGGGH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHC-------HHHHHHH------HHHCCCCEEEECCCCCHHHHHHH T ss_conf 9999999999999999999972799869998986336-------9999999------98639987990797637999999 Q ss_pred HHHHCC Q ss_conf 987380 Q gi|254780280|r 325 SYIKMT 330 (348) Q Consensus 325 ~~~r~~ 330 (348) .++... T Consensus 431 lla~~~ 436 (482) T 3h6e_A 431 RLIDPG 436 (482) T ss_dssp HHHCTT T ss_pred HHHHHH T ss_conf 998723 No 48 >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Probab=97.31 E-value=0.0034 Score=36.47 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=36.4 Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEE--CCCC------CCC-------HHHHHHHHHHHCCCCCCCEEEEEEEE Q ss_conf 79998575118999987799808899974--3887------358-------89999999972234565546999730 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESEPEFCCTV--QTSD------YEN-------LEHAIQEVIYRKISIRLRSAFLAIAT 76 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~i~~~~~~--~t~~------~~~-------~~~~i~~~l~~~~~~~~~~igi~v~G 76 (348) .|+||||-|++|+.++|.+ ++++...+. +... ..+ +.+++++++++....++.+|+|+.-+ T Consensus 2 ylgiDiGTtsiKa~l~d~~-g~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~l~~~~~~~~I~aIgis~~~ 77 (484) T 2itm_A 2 YIGIDLGTSGVKVILLNEQ-GEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQM 77 (484) T ss_dssp EEEEEECSSEEEEEEECTT-SCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCCTTCCEEEEEECS T ss_pred EEEEEECCCCEEEEEECCC-CCEEEEEEEECCEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 8999833434245488198-989999998435155899838989999999999999999976796670799997637 No 49 >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Probab=97.27 E-value=0.0017 Score=38.32 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=38.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHHH Q ss_conf 999999999999999999997-4899738996567765567727648999988379837889738879995787227759 Q gi|254780280|r 245 LKAINLFCEYLGRVAGDLALI-FMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAGM 323 (348) Q Consensus 245 ~~~~~~~~~~lg~~i~~l~~~-~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~GA 323 (348) +.+++-.+..+-..+-.+.-. ..++ -|++.||.+++ +.++|.. .+.+ ..||+.....+++.+|| T Consensus 419 ra~lEgia~~~~~~~e~~~~~g~~~~-~i~~~GGga~n-------~~~~Qi~------Adv~-g~pV~~~~~~E~~alGa 483 (554) T 3l0q_A 419 LATIQALALGTRHIIETMNQNGYNID-TMMASGGGTKN-------PIFVQEH------ANAT-GCAMLLPEESEAMLLGS 483 (554) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCC-EEEEESGGGGC-------HHHHHHH------HHHH-CCEEEEESCSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCHHHC-------HHHHHHH------HHHH-CCCEEECCCCCHHHHHH T ss_conf 99999999999999999996399978-79998951347-------8999999------9988-99359678874799999 Q ss_pred HHHHH Q ss_conf 99873 Q gi|254780280|r 324 VSYIK 328 (348) Q Consensus 324 a~~~r 328 (348) |.++. T Consensus 484 A~lA~ 488 (554) T 3l0q_A 484 AMMGT 488 (554) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 50 >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} Probab=97.25 E-value=0.0037 Score=36.27 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=42.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHH Q ss_conf 57999999999999999999999748997389965677655677276489999883798378897388799957872277 Q gi|254780280|r 242 PIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIA 321 (348) Q Consensus 242 ~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~ 321 (348) ..++.+++-.+..+...+..+...-.+..-|++.||.+.+ +.++|-+ .+.+ ..||++....+++.+ T Consensus 374 ~l~rai~Egia~~~~~~~~~~~~~g~~~~~i~~~GGgs~s-------~~~~Qi~------Adv~-g~pV~~~~~~e~~a~ 439 (508) T 3ifr_A 374 HLWRALLEAVALAFRHHVAVLDDIGHAPQRFFASDGGTRS-------RVWMGIM------ADVL-QRPVQLLANPLGSAV 439 (508) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEESGGGGC-------HHHHHHH------HHHH-TSCEEEEECCSTHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------HHHHHHH------HHHH-CCEEEECCCCCHHHH T ss_conf 9999999989998799999999719997779998933017-------9999999------9988-984897587627999 Q ss_pred HHHHHHHCC Q ss_conf 599987380 Q gi|254780280|r 322 GMVSYIKMT 330 (348) Q Consensus 322 GAa~~~r~~ 330 (348) |||.++... T Consensus 440 GaA~lA~~~ 448 (508) T 3ifr_A 440 GAAWVAAIG 448 (508) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999997 No 51 >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Probab=97.14 E-value=0.0047 Score=35.61 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=43.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--CCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHH Q ss_conf 799999999999999999999974--899738996567765567727648999988379837889738879995787227 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIF--MARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAI 320 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~--~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl 320 (348) ..+.+++-.+..+...+-.+.-.. .+. -|++.||.+.+ +.++|-+ .+.+ +.||.+....+++. T Consensus 377 l~rAvlEgia~~~~~~~e~l~~~~g~~~~-~i~~~GG~a~s-------~~w~Qi~------Advl-g~pV~~~~~~e~~a 441 (506) T 3h3n_X 377 FVRATLQAVAYQSKDVIDTMKKDSGIDIP-LLKVDGGAAKN-------DLLMQFQ------ADIL-DIDVQRAANLETTA 441 (506) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCCC-EEEEESGGGGC-------HHHHHHH------HHHH-TSEEEECSSSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCHHC-------HHHHHHH------HHHH-CCEEEECCCCCHHH T ss_conf 99999999999999999999985299987-79998783257-------8999999------9997-99159569884789 Q ss_pred HHHHHHHH Q ss_conf 75999873 Q gi|254780280|r 321 AGMVSYIK 328 (348) Q Consensus 321 ~GAa~~~r 328 (348) +|||.++. T Consensus 442 lGaA~lA~ 449 (506) T 3h3n_X 442 LGAAYLAG 449 (506) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 52 >2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4 c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* Probab=97.07 E-value=0.0052 Score=35.38 Aligned_cols=73 Identities=7% Similarity=0.032 Sum_probs=42.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHH Q ss_conf 79999999999999999999997--4899738996567765567727648999988379837889738879995787227 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALI--FMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAI 320 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~--~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl 320 (348) ..+.+++-.+-.+...+..+.-. ..++. |++.||.+++ +.++|- ..+.+ +.||.+....+++. T Consensus 375 ~~rAvlEgia~~~~~~~~~l~~~~g~~~~~-I~~~GGgakn-------~~~~Qi------~Adv~-g~pV~~~~~~e~~a 439 (510) T 2p3r_A 375 IIRATLESIAYQTRDVLEAMQADSGIRLHA-LRVDGGAVAN-------NFLMQF------QSDIL-GTRVERPEVREVTA 439 (510) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCSE-EEEESGGGGC-------HHHHHH------HHHHH-TSEEEEESCCCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCHHC-------HHHHHH------HHHHH-CCEEEECCCCCHHH T ss_conf 999999968999999999999864989877-9998970347-------899999------99997-99269569885689 Q ss_pred HHHHHHHHCC Q ss_conf 7599987380 Q gi|254780280|r 321 AGMVSYIKMT 330 (348) Q Consensus 321 ~GAa~~~r~~ 330 (348) +|||.++..- T Consensus 440 ~GaA~lA~~~ 449 (510) T 2p3r_A 440 LGAAYLAGLA 449 (510) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999997 No 53 >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1} Probab=97.03 E-value=0.012 Score=33.22 Aligned_cols=71 Identities=7% Similarity=0.077 Sum_probs=40.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHH Q ss_conf 79999999999999999999997489973899656776556772764899998837983788973887999578722775 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAG 322 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~G 322 (348) ..+.+++-.+..+...+-.+-....++ -|++.||.+++ +.++|-+ .+.+ ..||.+....+++.+| T Consensus 369 l~ravlEgia~~~~~~~~~l~~~~~~~-~i~~~GGga~n-------~~~~Qi~------Adv~-g~pV~~~~~~ea~a~G 433 (497) T 2zf5_O 369 LARATLEAIAYLTRDVVDEMEKLVQIK-ELRVDGGATAN-------DFLMQFQ------ADIL-NRKVIRPVVKETTALG 433 (497) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCC-CEEEESGGGGC-------HHHHHHH------HHHH-TSCEEEESCSCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCHHC-------HHHHHHH------HHHH-CCCEEECCCCCHHHHH T ss_conf 999998608999999999998347987-69996580346-------8999999------9997-9905977988679999 Q ss_pred HHHHHH Q ss_conf 999873 Q gi|254780280|r 323 MVSYIK 328 (348) Q Consensus 323 Aa~~~r 328 (348) ||.++. T Consensus 434 aA~lA~ 439 (497) T 2zf5_O 434 AAYLAG 439 (497) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 54 >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Probab=96.97 E-value=0.0021 Score=37.83 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=35.1 Q ss_pred CEEEEEECCCCEEEEEEECCCCEEE----EEEEECCC----------CCCCHHHHHHHHHHHCC--CCCCCEEEEEEEE Q ss_conf 3799985751189999877998088----99974388----------73588999999997223--4565546999730 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMESEPE----FCCTVQTS----------DYENLEHAIQEVIYRKI--SIRLRSAFLAIAT 76 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~~i~----~~~~~~t~----------~~~~~~~~i~~~l~~~~--~~~~~~igi~v~G 76 (348) .+|+||||-|++|.+|+|.++..+. ...+.++. |.+.+.+.+.+.+++.. ..++.+|+++.-+ T Consensus 5 ~~lgiDiGTtsvKa~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~v~~~l~~~~~~~~~I~aI~is~~~ 83 (489) T 2uyt_A 5 NCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAAGIAIDSIGIDTWG 83 (489) T ss_dssp EEEEEEECSSEEEEEEEEEEGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHTTCCCCEEEEEECS T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC T ss_conf 6999977643526589967998899999986516998734899648989999999999999984488981599993677 No 55 >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Probab=96.96 E-value=0.0071 Score=34.52 Aligned_cols=71 Identities=10% Similarity=-0.003 Sum_probs=42.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--CCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHH Q ss_conf 799999999999999999999974--899738996567765567727648999988379837889738879995787227 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIF--MARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAI 320 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~--~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl 320 (348) ..+.+++-.+..+...+-.+.... .++. |++.||.+++ +.++|. +.+.+ ..||.+....+++. T Consensus 377 ~~ra~~Egia~~~~~~~~~l~~~~g~~~~~-i~~~GGgs~s-------~~~~Qi------~Advl-g~pV~~~~~~e~~a 441 (504) T 2d4w_A 377 IARAALEATAFQSREVVDAMNADSGVDLTE-LRVDGGMVAN-------ELLMQF------QADQL-GVDVVRPKVAETTA 441 (504) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCE-EEEESGGGGC-------HHHHHH------HHHHH-TSCEEEESCSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCHHHH-------HHHHHH------HHHHH-CCEEEECCCCCHHH T ss_conf 999999999999999999999863989887-9998952325-------999999------99998-99259579885799 Q ss_pred HHHHHHHH Q ss_conf 75999873 Q gi|254780280|r 321 AGMVSYIK 328 (348) Q Consensus 321 ~GAa~~~r 328 (348) +|||.++. T Consensus 442 lGaA~lA~ 449 (504) T 2d4w_A 442 LGAAYAAG 449 (504) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 56 >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Probab=96.89 E-value=0.00068 Score=40.82 Aligned_cols=76 Identities=12% Similarity=0.140 Sum_probs=39.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHH Q ss_conf 95799999999999999999999974899738996567765567727648999988379837889738879995787227 Q gi|254780280|r 241 DPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAI 320 (348) Q Consensus 241 D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl 320 (348) +.++...++.....+-..+...-+....-+.|+|-||-++ .+++.+ ...+.| .+. +..-...+.+-- T Consensus 275 e~l~~~~~~~~~~~i~~~l~~a~~~~~~I~~V~LvGGssr--iP~v~~-~l~~~f-g~~---------~~~~~npdeaVA 341 (509) T 2v7y_A 275 EELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTR--IPAVQE-AIKREL-GKE---------PHKGVNPDEVVA 341 (509) T ss_dssp HHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGG--CHHHHH-HHHHHH-SSC---------CBCCSCTTTHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCC--CHHHHH-HHHHHH-CCC---------CCCCCCCCHHHH T ss_conf 9888999999999999999983999899968999897047--689999-999985-889---------677978101899 Q ss_pred HHHHHHHHC Q ss_conf 759998738 Q gi|254780280|r 321 AGMVSYIKM 329 (348) Q Consensus 321 ~GAa~~~r~ 329 (348) +|||.++.. T Consensus 342 ~GAai~a~~ 350 (509) T 2v7y_A 342 IGAAIQGGV 350 (509) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999786 No 57 >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Probab=96.73 E-value=0.012 Score=33.10 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=43.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--CCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHH Q ss_conf 799999999999999999999974--899738996567765567727648999988379837889738879995787227 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIF--MARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAI 320 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~--~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl 320 (348) .++.+++-.+..+...+-.+.... .+...|+++||.+++ +.++|.+ .+.+ +.||.+....+++. T Consensus 380 l~rav~Egia~~~~~~~~~l~~~~G~~~~~~i~~~GGgs~s-------~~~~Qi~------Adv~-g~pV~~~~~~e~~a 445 (503) T 2w40_A 380 IVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKN-------KPFMQFN------SDII-NTKIEVSKYKEVTS 445 (503) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCEEEESGGGGC-------HHHHHHH------HHHH-TSCEEEESCSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------HHHHHHH------HHHH-CCEEEECCCCCHHH T ss_conf 99988989999999999999997298976089996863109-------9999999------9988-99079579885699 Q ss_pred HHHHHHHH Q ss_conf 75999873 Q gi|254780280|r 321 AGMVSYIK 328 (348) Q Consensus 321 ~GAa~~~r 328 (348) +|||.++. T Consensus 446 lGaA~lA~ 453 (503) T 2w40_A 446 LGAAVLAG 453 (503) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 58 >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=96.72 E-value=0.0088 Score=33.96 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=38.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHH----C-CCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHH Q ss_conf 999999999999999999974----8-99738996567765567727648999988379837889738879995787227 Q gi|254780280|r 246 KAINLFCEYLGRVAGDLALIF----M-ARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAI 320 (348) Q Consensus 246 ~~~~~~~~~lg~~i~~l~~~~----~-p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl 320 (348) ++++-..+-++..+....-.+ + +..-|++.||.+++ +.++|-+ .+.+ +.||++....+++. T Consensus 371 ~l~rai~Egia~~~~~~~~~~~~~~g~~~~~i~~~GGgs~s-------~~~~Qi~------Adv~-g~pV~~~~~~e~~a 436 (495) T 2dpn_A 371 HLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQN-------RLFLKIQ------ADLL-GVPVAVPEVTETTA 436 (495) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGC-------HHHHHHH------HHHH-TSCEEEESCSCHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHC-------HHHHHHH------HHHH-CCEEEECCCCCHHH T ss_conf 99999998888899999999987639997779997710337-------9999999------9997-99079778874799 Q ss_pred HHHHHHH Q ss_conf 7599987 Q gi|254780280|r 321 AGMVSYI 327 (348) Q Consensus 321 ~GAa~~~ 327 (348) +|||.++ T Consensus 437 ~GaA~lA 443 (495) T 2dpn_A 437 LGAALMA 443 (495) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 59 >1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Probab=96.58 E-value=0.0064 Score=34.79 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=56.1 Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCC--CCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECC Q ss_conf 6773799985751189999877998088999743887--35889999999972234565546999730441685564213 Q gi|254780280|r 11 IAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSD--YENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTN 88 (348) Q Consensus 11 ~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~--~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~ 88 (348) |.|.+|++|.|-.+|=+|+.|+.........+++.++ .+.+.+.|.+++.+ ..+..+.||.|=.. ++.....+. T Consensus 1 ~~MriLgiD~G~kriGvAisD~~~~~a~pl~~i~~~~~~~~~~~~~i~~ii~e---~~i~~iViGlP~~~-dg~~~~~~~ 76 (150) T 1vhx_A 1 MSLRILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKD---YTIDKIVLGFPKNM-NGTVGPRGE 76 (150) T ss_dssp -CEEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTT---SEEEEEEEECCCCB-TTBCCHHHH T ss_pred CCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH---HCCCEEEEECCCCC-CCCHHHHHH T ss_conf 98609999528997999995699883356011332234524799999999998---39996998578466-887548899 Q ss_pred CCCCCCHHHHHHHHCCCCEEEECH Q ss_conf 566669889999828985588212 Q gi|254780280|r 89 YHWVIDPEELISRMQFEDVLLIND 112 (348) Q Consensus 89 ~~~~~~~~~l~~~~~~~~v~i~ND 112 (348) .. ......+.+.++ .||.+.+. T Consensus 77 ~v-~~f~~~l~~~~~-l~V~~~DE 98 (150) T 1vhx_A 77 AS-QTFAKVLETTYN-VPVVLWDE 98 (150) T ss_dssp HH-HHHHHHHHHHHC-SCEEEECC T ss_pred HH-HHHHHHHCCCCC-CCEEEECC T ss_conf 99-999996265889-75688678 No 60 >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Probab=96.38 E-value=0.023 Score=31.41 Aligned_cols=74 Identities=9% Similarity=0.019 Sum_probs=37.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEE-ECCCCHH Q ss_conf 579999999999999999999997489973899656776556772764899998837983788973887999-5787227 Q gi|254780280|r 242 PIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVI-TNPYIAI 320 (348) Q Consensus 242 ~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~-~~~~agl 320 (348) .++..+++++...+-.++...-+....-+.|+|-||-++- +.+.+ ...+.|-.+ ++... ..+.+-- T Consensus 304 ~l~~~l~~r~~~~i~~~L~~a~~~~~dId~V~LvGGssri--P~V~~-~l~~~f~~~----------~~~~~in~deaVa 370 (554) T 1yuw_A 304 ELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRI--PKIQK-LLQDFFNGK----------ELNKSINPDEAVA 370 (554) T ss_dssp HHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGC--HHHHH-HHHHHTTTC----------CCBCCSCTTTHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCH--HHHHH-HHHHHHCCC----------CCCCCCCCHHHHH T ss_conf 8889999999999999999829998889789998983743--77999-999981998----------8888879506789 Q ss_pred HHHHHHHH Q ss_conf 75999873 Q gi|254780280|r 321 AGMVSYIK 328 (348) Q Consensus 321 ~GAa~~~r 328 (348) +|||.++- T Consensus 371 ~GAA~~a~ 378 (554) T 1yuw_A 371 YGAAVQAA 378 (554) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 98999999 No 61 >1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Probab=96.27 E-value=0.0087 Score=33.98 Aligned_cols=92 Identities=15% Similarity=0.022 Sum_probs=51.0 Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCCCC Q ss_conf 73799985751189999877998088999743887358899999999722345655469997304416855642135666 Q gi|254780280|r 13 FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHWV 92 (348) Q Consensus 13 ~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~~~ 92 (348) |.+|++|+|-.+|=+|+.|..+..-.....+..++.+...+.|.+++.+ ..+..+.||.|=.. ++.....+.... T Consensus 1 MriLglD~G~kriGvAisd~~~~~A~pl~~i~~~~~~~~~~~l~~li~e---~~i~~iVvGlP~~~-dG~~~~~~~~v~- 75 (98) T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRR---EGLGKLVVGLPLRT-DLKESAQAGKVL- 75 (98) T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHH---HTCCEEEEECCCCC-CSSSCCCSSTTH- T ss_pred CCEEEEEECCCEEEEEEECCCCCEEECEEEEECCCCHHHHHHHHHHHHH---HCCCEEEECCCCCC-CCCCCHHHHHHH- T ss_conf 9299998089989999925999878177889825856899999999997---18574991589778-999198999999- Q ss_pred CCHHHHHHHHCCCCEEEEC Q ss_conf 6988999982898558821 Q gi|254780280|r 93 IDPEELISRMQFEDVLLIN 111 (348) Q Consensus 93 ~~~~~l~~~~~~~~v~i~N 111 (348) .....|. .. ..||.+.. T Consensus 76 ~f~~~L~-~~-~~pv~~~D 92 (98) T 1iv0_A 76 PLVEALR-AR-GVEVELWD 92 (98) T ss_dssp HHHHHHH-HT-TCEEEEEC T ss_pred HHHHHHH-HC-CCCEEEEC T ss_conf 9999986-37-99999986 No 62 >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, acetylation, ATP-binding, calmodulin-binding, chaperone, cytoplasm; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Probab=96.10 E-value=0.022 Score=31.53 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.6 Q ss_pred EEEEEECCCCEEEEEEECC Q ss_conf 7999857511899998779 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSM 33 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~ 33 (348) .++||+|-||+++|+++.. T Consensus 4 ~iGIDlGTt~s~va~~~~~ 22 (675) T 3d2f_A 4 PFGLDLGNNNSVLAVARNR 22 (675) T ss_dssp CEEEECCSSEEEEEEEETT T ss_pred EEEEECCCCCEEEEEEECC T ss_conf 5999837117799999999 No 63 >3djc_A Type III pantothenate kinase; structural genomics, putative transferase, PSI-2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Probab=96.05 E-value=0.019 Score=31.92 Aligned_cols=134 Identities=10% Similarity=0.093 Sum_probs=64.3 Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCC--CCCHHHHHHHHHHHCC--CCCCCEEEEEEEEEEECCCEEEEC Q ss_conf 773799985751189999877998088999743887--3588999999997223--456554699973044168556421 Q gi|254780280|r 12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSD--YENLEHAIQEVIYRKI--SIRLRSAFLAIATPIGDQKSFTLT 87 (348) Q Consensus 12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~--~~~~~~~i~~~l~~~~--~~~~~~igi~v~Gpv~~~~~~~~~ 87 (348) .|- |+||||=|++++++++. .++....+.+++. .+.+...+..++.... ...+..+.++.-.|-.+. T Consensus 2 ~M~-L~IDiGNT~iK~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~v~~ssVvp~~~~------ 72 (266) T 3djc_A 2 SLI-LCIDVGNSHIYGGVFDG--DEIKLRFRHTSKVSTSDELGIFLKSVLRENNCSPETIRKIAICSVVPQVDY------ 72 (266) T ss_dssp -CE-EEEEECSSEEEEEEEET--TEEEEEEEEECSCCCHHHHHHHHHHHHHTTTCCGGGCCEEEEEESCHHHHH------ T ss_pred CEE-EEEEECCCCCEEEEEEC--CEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECHHHHH------ T ss_conf 669-99998677109999989--999999971687678889999999998764897321555799985568899------ Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECHHH---HHHHHHC-CCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEC Q ss_conf 356666988999982898558821265---4320000-1586553530243455766675279931762022454310 Q gi|254780280|r 88 NYHWVIDPEELISRMQFEDVLLINDFE---AQALAIC-SLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIR 161 (348) Q Consensus 88 ~~~~~~~~~~l~~~~~~~~v~i~ND~~---a~a~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~ 161 (348) .....+.+.+...+..+..+.. -..|..+ .++..++..+-.+.. .....+++++-.||-+-+-.+-. T Consensus 73 -----~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~LG~DR~~~~~aa~~--~~~~~~~iVID~GTAiTiD~v~~ 143 (266) T 3djc_A 73 -----SLRSACVKYFSIDPFLLQAGVKTGLNIKYRNPVEVGADRIANAIAATH--SFPNQNIIVIDFGTATTFCAISH 143 (266) T ss_dssp -----HHHHHHHHHTCCCCEECCSSSCCCCEECCSSGGGSCHHHHHHHHHHHH--HSTTSEEEEEEESSEEEEEEECT T ss_pred -----HHHHHHHHHCCCCCCEECHHCCCCCCCCCCCHHHHCHHHHHHHHHHHH--CCCCCCEEEEECCCCEEEEEECC T ss_conf -----999999875256751110002678524367755208379999887875--06899889997687305236626 No 64 >1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Probab=96.02 E-value=0.027 Score=30.92 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=57.0 Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCC Q ss_conf 67737999857511899998779980889997438873588999999997223456554699973044168556421356 Q gi|254780280|r 11 IAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYH 90 (348) Q Consensus 11 ~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~ 90 (348) |+-.+|++|+|--+|=+|+.|..........+.+.++.....+.|.+++.+ ..+..+.||.|=.. ++.....+... T Consensus 1 m~griLgiD~G~kriGlAisd~~~~~a~pl~~i~~~~~~~~~~~l~~~i~e---~~~~~iVvG~P~~~-~g~~~~~~~~v 76 (138) T 1nu0_A 1 MSGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKE---WQPDEIIVGLPLNM-DGTEQPLTARA 76 (138) T ss_dssp CCCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHH---HCCSEEEEEEEECT-TSCBCHHHHHH T ss_pred CCCCEEEEEECCCEEEEEEECCCCCCEECCEEEECCCCHHHHHHHHHHHHH---CCCCEEEECCCCCC-CCCCCHHHHHH T ss_conf 997689999378879999947998843041889827746899999998630---48729995554577-89848899999 Q ss_pred CCCCHHHHHHHHCCCCEEEECH Q ss_conf 6669889999828985588212 Q gi|254780280|r 91 WVIDPEELISRMQFEDVLLIND 112 (348) Q Consensus 91 ~~~~~~~l~~~~~~~~v~i~ND 112 (348) ......|...++ .+|.+.+. T Consensus 77 -~~F~~~L~~~~~-i~v~~~DE 96 (138) T 1nu0_A 77 -RKFANRIHGRFG-VEVKLHDE 96 (138) T ss_dssp -HHHHHHHHHHHC-CCEEEEEE T ss_pred -HHHHHHHHHHHC-CCEEEEEC T ss_conf -999999998509-98799607 No 65 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Probab=95.93 E-value=0.066 Score=28.53 Aligned_cols=278 Identities=10% Similarity=0.038 Sum_probs=129.4 Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCC-------------CCHHHHHHHHHHHCC--CCCCCEEEEEEEEE Q ss_conf 737999857511899998779980889997438873-------------588999999997223--45655469997304 Q gi|254780280|r 13 FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDY-------------ENLEHAIQEVIYRKI--SIRLRSAFLAIATP 77 (348) Q Consensus 13 ~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~-------------~~~~~~i~~~l~~~~--~~~~~~igi~v~Gp 77 (348) |.+|+||==--.+-+|++++ +..+......-...+ +.+..++++.+++.. ..+++.++++. || T Consensus 1 M~iLgIeTScd~tsvAi~~~-~~il~~~~~~~~~~~GGvvP~~A~r~H~~~l~~~i~~~l~~a~i~~~~id~iavt~-gP 78 (330) T 2ivn_A 1 MLALGIEGTAHTLGIGIVSE-DKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQ-GP 78 (330) T ss_dssp CCEEEEECSSSEEEEEEECS-SCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCEEEEEE-ES T ss_pred CEEEEEECCCHHHEEEEEEC-CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEC-CC T ss_conf 90999983644028999989-99999988831267798585899999999999999999998499855686688812-89 Q ss_pred EECCCEEEECCCCC-CCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEE Q ss_conf 41685564213566-66988999982898558821265432000015865535302434557666752799317620224 Q gi|254780280|r 78 IGDQKSFTLTNYHW-VIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGI 156 (348) Q Consensus 78 v~~~~~~~~~~~~~-~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~ 156 (348) -. ++.+.- ....+.+...++ .|+.-+|-+++.+++..... .... ..+.+..|+-. T Consensus 79 G~------~~~L~vG~~~Ak~la~~~~-~P~i~v~Hl~aH~~~~~~~~--------------~~~p-l~llvSGGht~-- 134 (330) T 2ivn_A 79 GL------GPALRVVATAARALAVKYR-KPIVGVNHCIAHVEITKMFG--------------VKDP-VGLYVSGGNTQ-- 134 (330) T ss_dssp SC------HHHHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHGGGGGT--------------CCSC-EEEEECSSCEE-- T ss_pred CC------CCCHHHHHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHCC--------------CCCC-EEEEEECCCCE-- T ss_conf 84------1026999999999998608-76376263999998765336--------------7763-47788268827-- Q ss_pred EEEECCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCC-------C Q ss_conf 543105886301135678666676610234789999853189864877522223899999998740888643-------6 Q gi|254780280|r 157 SSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNK-------V 229 (348) Q Consensus 157 ~~~~~~~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~-------~ 229 (348) .+..... .+.. .|.+ ....-++-.|....+... .|-+|+-|++.++. ......... . T Consensus 135 ll~~~~~-~~~i----lg~T-~Dda~Gea~DKvar~Lgl--------~~PgGp~ie~~a~~--g~~~~~~~~~~~~~~fS 198 (330) T 2ivn_A 135 VLALEGG-RYRV----FGET-LDIGIGNAIDVFARELGL--------GFPGGPKVEKLAEK--GEKYIELPYAVKGMDLS 198 (330) T ss_dssp EEEEETT-EEEE----EEEB-SSSCHHHHHHHHHHHHTC--------CSCHHHHHHHHHHT--CCSCCCCCCCEETTEEC T ss_pred EEEECCC-CEEE----EEEE-CCCCHHHHHHHHHHHCCC--------CCCCCHHHHHHHHH--CCCCCCCCCCCCCCCEE T ss_conf 9998378-5389----8886-475236789999986699--------88896777899870--87655688788877230 Q ss_pred CC----HHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCH Q ss_conf 98----889988368----9579999999999999999999997489973899656776556772764899998837983 Q gi|254780280|r 230 LS----SKDIVSKSE----DPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPH 301 (348) Q Consensus 230 ~~----~~~~~~~~~----D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~ 301 (348) .+ +.....+.+ ...|..+-+...+.|-.-+...+-.+.+.. ++++|||+.+ .+| |+.+. T Consensus 199 FSGlkt~v~~~~~~~~~~~~diaasfQ~ai~~~L~~k~~~A~~~~~~~~-lvv~GGVAAN--~~L-----R~~L~----- 265 (330) T 2ivn_A 199 FSGLLTEAIRKYRSGKYRVEDLAYSFQETAFAALVEVTERAVAHTEKDE-VVLVGGVAAN--NRL-----REMLR----- 265 (330) T ss_dssp CHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSE-EEEESGGGGC--HHH-----HHHHH----- T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEECCHHHHH--HHH-----HHHHH----- T ss_conf 1378888899987302105888899999999999999999999839975-2322157766--999-----99999----- Q ss_pred HHHH--HHCCEEEE----ECCCCHHHHHHHHHHCCCCCCCCCC-CCCCCCCC Q ss_conf 7889--73887999----5787227759998738001244457-53110013 Q gi|254780280|r 302 KELM--RQIPTYVI----TNPYIAIAGMVSYIKMTDCFNLFIS-EGIKRRWF 346 (348) Q Consensus 302 ~~~l--~~ipv~~~----~~~~agl~GAa~~~r~~~~~~~~~~-~~~~~~~~ 346 (348) .+. +.++++.- .-|++..++.+.+.+-+..+...++ ..++.||- T Consensus 266 -~~~~~~g~~~~~Pp~~lCTDNAaMIA~aG~~~~~~G~~~~l~~~~i~prw~ 316 (330) T 2ivn_A 266 -IMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKAGISFRLEETIVKQKFR 316 (330) T ss_dssp -HHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHHTTCCCCGGGGSCCTTCC T ss_pred -HHHHHCCCEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC T ss_conf -999975998985886874067999999999999769999877686688895 No 66 >1e4f_T Cell division protein FTSA; bacterial cell division, actin family; 1.9A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1e4g_T* Probab=92.80 E-value=0.25 Score=24.94 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=41.8 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCC--EEEEEEEECCC--------CCCCHHHHHHHHHHH---CCCCCC Q ss_conf 98743458766773799985751189999877998--08899974388--------735889999999972---234565 Q gi|254780280|r 1 MNNISKKDFPIAFPVLLADIGGTNVRFAILRSMES--EPEFCCTVQTS--------DYENLEHAIQEVIYR---KISIRL 67 (348) Q Consensus 1 ~~~~~~~~~~~~~~vL~iDIGGT~ir~glv~~~~~--~i~~~~~~~t~--------~~~~~~~~i~~~l~~---~~~~~~ 67 (348) |+++|++.+ +.++|||-|+|++.+....++ ++......|+. +.+.+.++|++.+.+ .....+ T Consensus 1 m~~m~k~~~-----~vgiDIGSs~Ik~vv~~~~~~~~~iig~g~~ps~Gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~~i 75 (419) T 1e4f_T 1 MIDLSKTVF-----YTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSL 75 (419) T ss_dssp ------CEE-----EEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSEETTEESCHHHHHHHHHHHHHHHHHHHTSCC T ss_pred CCCCCCCCE-----EEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCEECCEEECHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 987776886-----999998756199999997599389999997456770388687689999999999999999838872 Q ss_pred CE-EEEEEEEE Q ss_conf 54-69997304 Q gi|254780280|r 68 RS-AFLAIATP 77 (348) Q Consensus 68 ~~-igi~v~Gp 77 (348) .. ..++++|. T Consensus 76 ~~~~vi~~~~~ 86 (419) T 1e4f_T 76 RSDFVISFSSV 86 (419) T ss_dssp CSCEEEEECCT T ss_pred CEEEEEECCCC T ss_conf 13799944764 No 67 >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Probab=92.76 E-value=0.37 Score=23.91 Aligned_cols=280 Identities=11% Similarity=0.021 Sum_probs=125.1 Q ss_pred CCCEEEEEECCCCEEEEEEECCCCEEEEEEEEC-CCCC-------------CCHHHHHHHHHHHCCCCCCCEEEEEEEEE Q ss_conf 773799985751189999877998088999743-8873-------------58899999999722345655469997304 Q gi|254780280|r 12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQ-TSDY-------------ENLEHAIQEVIYRKISIRLRSAFLAIATP 77 (348) Q Consensus 12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~-t~~~-------------~~~~~~i~~~l~~~~~~~~~~igi~v~Gp 77 (348) +|-+|+||===--+-+|+++.+ +++....+.. ...+ +.+..++++.+++.....+..|++.. || T Consensus 5 ~m~vLgIETScddTs~Aiv~~~-~~il~~~~~~~~~~~gGvvPe~A~r~H~~~l~~li~~al~~~~~~~id~IavT~-gP 82 (540) T 3en9_A 5 PMICLGLEGTAEKTGVGIVTSD-GEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEVVDKNEIDLIAFSQ-GP 82 (540) T ss_dssp SCEEEEEECSSSEEEEEEEETT-SCEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHHSCGGGCCEEEEEE-ES T ss_pred CCEEEEEECCCCCEEEEEEECC-CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CC T ss_conf 7379999866666078999689-809998678743898998908999999999999999999758954588899957-99 Q ss_pred EECCCEEEECCC-CCCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEE Q ss_conf 416855642135-6666988999982898558821265432000015865535302434557666752799317620224 Q gi|254780280|r 78 IGDQKSFTLTNY-HWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGI 156 (348) Q Consensus 78 v~~~~~~~~~~~-~~~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~ 156 (348) -. .+.+ ........+...++ .|+.-+|-+++..++...... ... . ..+.+..|... . T Consensus 83 Gl------~g~L~vG~~~Ak~La~~~~-iPli~V~HleaH~~a~~~~~~------------~~~-p-l~llvSGGht~-l 140 (540) T 3en9_A 83 GL------GPSLRVTATVARTLSLTLK-KPIIGVNHCIAHIEIGKLTTE------------AED-P-LTLYVSGGNTQ-V 140 (540) T ss_dssp SC------HHHHHHHHHHHHHHHHHHT-CCEEEEEHHHHHHHHHHHHSS------------CSS-C-EEEEECSSCEE-E T ss_pred CC------HHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHCCCCCCC------------CCC-C-EEEEECCCCEE-E T ss_conf 73------4638999999999999639-981563389886743323345------------667-4-58998379737-9 Q ss_pred EEEECCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCC-------C Q ss_conf 543105886301135678666676610234789999853189864877522223899999998740888643-------6 Q gi|254780280|r 157 SSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNK-------V 229 (348) Q Consensus 157 ~~~~~~~~g~~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~-------~ 229 (348) +.... +.+-+ .|.+. .-..++-.+-...+..- .|-.|+.+++.+..- ........ . T Consensus 141 -i~~~~--~~~~i---lg~T~-Dda~Ge~fDKvAr~Lgl--------~~pgG~~ie~lA~~g--~~~~~~~~~~~~~~fS 203 (540) T 3en9_A 141 -IAYVS--KKYRV---FGETL-DIAVGNCLDQFARYVNL--------PHPGGPYIEELARKG--KKLVDLPYTVKGMDIA 203 (540) T ss_dssp -EEEET--TEEEE---EEEBS-SSCHHHHHHHHHHHTTC--------CSSCHHHHHHHHHTC--CCCCCCCCCEETTEEC T ss_pred -EEECC--CCEEE---EEEEC-CCHHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHC--CCCCCCCCCCCCCCCC T ss_conf -99836--42699---87606-83137899999986487--------789827899998608--8655688779998647 Q ss_pred CC----HHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHH Q ss_conf 98----8899883689---5799999999999999999999974899738996567765567727648999988379837 Q gi|254780280|r 230 LS----SKDIVSKSED---PIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHK 302 (348) Q Consensus 230 ~~----~~~~~~~~~D---~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~ 302 (348) .+ +.....+.+. .+|..+-+...+.|...+......+.... ++++|||+.+ .+| ++.+. T Consensus 204 FSGlktav~~~~~~~~~~~diaas~Q~~i~~~L~~~~~~a~~~~~~~~-lvvsGGVaaN--~~L-----R~~l~------ 269 (540) T 3en9_A 204 FSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTNKGE-VMLVGGVAAN--NRL-----REMLK------ 269 (540) T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE-EEEESGGGGC--HHH-----HHHHH------ T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECCHHHH--HHH-----HHHHH------ T ss_conf 886879999998739989999999999999999999999999709297-9998549998--999-----99999------ Q ss_pred HHHH--HCCEEEE----ECCCCHHHHHHHHHHCCCCCCCCC-CCCCCCCCC Q ss_conf 8897--3887999----578722775999873800124445-753110013 Q gi|254780280|r 303 ELMR--QIPTYVI----TNPYIAIAGMVSYIKMTDCFNLFI-SEGIKRRWF 346 (348) Q Consensus 303 ~~l~--~ipv~~~----~~~~agl~GAa~~~r~~~~~~~~~-~~~~~~~~~ 346 (348) .+.+ .++++.- ..|++..++-+.+.+-+......+ ...+..+|- T Consensus 270 ~~~~~~~~~~~~p~~~~ctDNaaMIA~~g~~~~~~g~~~~l~~~~i~p~~r 320 (540) T 3en9_A 270 AMCEGQNVDFYVPPKEFCGDNGAMIAWLGLLMHKNGRWMSLDETKIIPNYR 320 (540) T ss_dssp HHHHHTTCEEECCCHHHHSSCHHHHHHHHHHHHHTCCCCCGGGCCCCTTCC T ss_pred HHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC T ss_conf 999876999987887871488999999999999759999866576313899 No 68 >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Probab=91.61 E-value=0.51 Score=23.05 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=17.9 Q ss_pred HHHHHCCCCEEEECHHHHHHHHHC Q ss_conf 999828985588212654320000 Q gi|254780280|r 98 LISRMQFEDVLLINDFEAQALAIC 121 (348) Q Consensus 98 l~~~~~~~~v~i~ND~~a~a~~~~ 121 (348) ..+..+...+.+.++..|++++.. T Consensus 117 Aa~~Ag~~~v~li~ep~AAa~~y~ 140 (344) T 1jce_A 117 AGLEAGASKVFLIEEPMAAAIGSN 140 (344) T ss_dssp HHHHTTCSEEEEEEHHHHHHHHTT T ss_pred HHHHHCCCEEEECCCHHHHHHHHC T ss_conf 999809868984165289873301 No 69 >3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Probab=90.79 E-value=0.2 Score=25.63 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=24.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECH Q ss_conf 9579999999999999999999997489973899656 Q gi|254780280|r 241 DPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGG 277 (348) Q Consensus 241 D~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGG 277 (348) +..|..+.+...+.+...+..+.....+.. |++.|| T Consensus 249 ~~~a~~i~~~~~~~i~~ai~~v~~~~~~~p-lv~~Gg 284 (334) T 3cet_A 249 ENIAKNYYELWKELILENVENVAEKYGSKK-VVITGL 284 (334) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEST T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEECC T ss_conf 999999999999999999999972689982-999888 No 70 >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Probab=89.62 E-value=0.77 Score=21.95 Aligned_cols=90 Identities=12% Similarity=0.197 Sum_probs=50.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH--HCCEEEE----EC Q ss_conf 57999999999999999999999748997389965677655677276489999883798378897--3887999----57 Q gi|254780280|r 242 PIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMR--QIPTYVI----TN 315 (348) Q Consensus 242 ~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~--~ipv~~~----~~ 315 (348) ..|..+-+...+.|-..+......+.+. -++++|||+.+ .+| ++.+. .+.+ +++++.- .. T Consensus 224 diaas~Q~~i~~~l~~~~~~al~~~~~k-~lvvsGGVAaN--~~L-----R~~l~------~~~~~~~~~~~~pp~~~ct 289 (334) T 3eno_A 224 DISYSIQETAFAMLVEVLERALYVSGKD-EILMAGGVALN--RRL-----RDMVT------NMAREAGIRSYLTDREYCM 289 (334) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCS-EEEEESSGGGC--HHH-----HHHHH------HHHHHHTSEEECCCTTTTS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECCCHHHH--HHH-----HHHHH------HHHHHCCCEEECCCHHHHH T ss_conf 2118899999999999999999985888-05414857788--999-----99999------9999759989889858724 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCC-CCCCCCC Q ss_conf 87227759998738001244457-5311001 Q gi|254780280|r 316 PYIAIAGMVSYIKMTDCFNLFIS-EGIKRRW 345 (348) Q Consensus 316 ~~agl~GAa~~~r~~~~~~~~~~-~~~~~~~ 345 (348) |++..++.+.+.+-+........ ..++-|| T Consensus 290 DNAaMIA~ag~~~~~~g~~~~~~~~~~~pr~ 320 (334) T 3eno_A 290 DNGIMIAQAALLMYKSGVRMSVEETAVNPRF 320 (334) T ss_dssp CCTHHHHHHHHHHHHTTCCCCGGGCCCCTTC T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC T ss_conf 7799999999999985999986537768999 No 71 >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Probab=84.44 E-value=0.47 Score=23.31 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.5 Q ss_pred CEEEEEECCCCEEEEEEECC Q ss_conf 37999857511899998779 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSM 33 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~ 33 (348) +|++||+|-||..+|+++.. T Consensus 3 ~viGIDlGtt~s~va~~~~~ 22 (605) T 2kho_A 3 KIIGIDLGTTNSCVAIMDGT 22 (605) T ss_dssp -CEEEECCSSEEEEEEEETT T ss_pred CEEEEECCHHHEEEEEEECC T ss_conf 87999848235899999999 No 72 >2gel_A Putative GRAM negative resuscitation promoting factor; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium LT2} PDB: 2gem_A 1okj_A Probab=82.63 E-value=1.8 Score=19.68 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=58.4 Q ss_pred CCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCC-CCCHHHHHHHHHHHCC--CCCCCEEEEEEEEEEECCCEEEECCC Q ss_conf 73799985751189999877998088999743887-3588999999997223--45655469997304416855642135 Q gi|254780280|r 13 FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSD-YENLEHAIQEVIYRKI--SIRLRSAFLAIATPIGDQKSFTLTNY 89 (348) Q Consensus 13 ~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~-~~~~~~~i~~~l~~~~--~~~~~~igi~v~Gpv~~~~~~~~~~~ 89 (348) |+||+||-=...+-+++.++ +++........+. .+.+...|++++.+.. ..+++.+++++ ||=. +|.+ T Consensus 1 M~iLaIdTS~~~~sval~~~--~~i~~~~~~~~r~hs~~L~~~i~~~L~~~~i~~~did~i~v~~-GPGS------FTGl 71 (231) T 2gel_A 1 MRILAIDTATEACSVALWNN--GTINAHFELCPREHTQRILPMVQEILAASGASLNEIDALAFGR-GPGS------FTGV 71 (231) T ss_dssp CEEEEEECSSSEEEEEEEET--TEEEEEEEECCSCCHHHHHHHHHHHHHHTTCCGGGCSEEEEEC-CSSC------HHHH T ss_pred CCEEEEECCCCCEEEEEEEC--CEEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHCEEEEEC-CCCC------HHHH T ss_conf 98999993772719999999--9999999975589999999999999875502123310799975-8651------3758 Q ss_pred CCCCC-HHHHHHHHCCCCEEEECHHHHHHHHH Q ss_conf 66669-88999982898558821265432000 Q gi|254780280|r 90 HWVID-PEELISRMQFEDVLLINDFEAQALAI 120 (348) Q Consensus 90 ~~~~~-~~~l~~~~~~~~v~i~ND~~a~a~~~ 120 (348) .-... ...+...+ ..|+.=++-+++.|+.. T Consensus 72 Rig~s~akgla~~~-~ip~igvssl~~lA~~~ 102 (231) T 2gel_A 72 RIGIGIAQGLALGA-NLPMIGVSTLATMAQGA 102 (231) T ss_dssp HHHHHHHHHHHHTT-TCCEEEECHHHHHHHHH T ss_pred HHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHH T ss_conf 89999999999974-88867527699999986 No 73 >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Probab=76.68 E-value=0.95 Score=21.38 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.1 Q ss_pred CEEEEEECCCCEEEEEEECC Q ss_conf 37999857511899998779 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSM 33 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~ 33 (348) +|++||+|-||+.+++++.. T Consensus 3 ~viGIDfGTt~s~va~~~~~ 22 (383) T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGT 22 (383) T ss_dssp CCCEEECCSSEEEEEEEETT T ss_pred CEEEEECCCCCEEEEEEECC T ss_conf 99999856028899999999 No 74 >2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermotoga maritima MSB8} SCOP: c.55.1.9 c.55.1.9 Probab=76.27 E-value=2.9 Score=18.43 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=56.1 Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCC-CCCHHHHHHHHHHHC--CCCCCCEEEEEEEEEEECCCEEEEC Q ss_conf 6773799985751189999877998088999743887-358899999999722--3456554699973044168556421 Q gi|254780280|r 11 IAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSD-YENLEHAIQEVIYRK--ISIRLRSAFLAIATPIGDQKSFTLT 87 (348) Q Consensus 11 ~~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~-~~~~~~~i~~~l~~~--~~~~~~~igi~v~Gpv~~~~~~~~~ 87 (348) .-|.+|+||-= |++.+++.+. ..+........+. .+.+...|++++.+. ....++.+++++ ||=. +| T Consensus 11 ~~M~iLaiDTS-~~~sval~~~--~~i~~~~~~~~r~hse~L~~~i~~~L~~~~l~~~did~i~v~~-GPGs------FT 80 (218) T 2a6a_A 11 HHMNVLALDTS-QRIRIGLRKG--EDLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGI-GPGG------LT 80 (218) T ss_dssp --CEEEEEECS-SSEEEEEEET--TEEEEEEEESCGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEEC-CSSC------HH T ss_pred CCCEEEEEECC-CCCEEEEEEC--CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEC-CCCC------HH T ss_conf 54607779827-7647999989--9999998326668999999999999998599978863899956-8980------88 Q ss_pred CCCCCCC-HHHHHHHHCCCCEEEECHHHHHHHH Q ss_conf 3566669-8899998289855882126543200 Q gi|254780280|r 88 NYHWVID-PEELISRMQFEDVLLINDFEAQALA 119 (348) Q Consensus 88 ~~~~~~~-~~~l~~~~~~~~v~i~ND~~a~a~~ 119 (348) ...-... ...+...+ ..|+.-++-+++.++. T Consensus 81 GlRIg~a~akgla~~~-~ipl~~vssl~~la~~ 112 (218) T 2a6a_A 81 GLRVGIATVVGLVSPY-DIPVAPLNSFEMTAKS 112 (218) T ss_dssp HHHHHHHHHHHHHGGG-TCCEEEECHHHHHHHT T ss_pred HHHHHHHHHHHHHHHC-CCCCCCCCHHHHHHHH T ss_conf 8989999999999864-9985545779999975 No 75 >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Probab=75.24 E-value=3 Score=18.26 Aligned_cols=99 Identities=10% Similarity=0.041 Sum_probs=52.4 Q ss_pred CCEEEEEEC-CCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCCC Q ss_conf 737999857-5118999987799808899974388735889999999972234565546999730441685564213566 Q gi|254780280|r 13 FPVLLADIG-GTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHW 91 (348) Q Consensus 13 ~~vL~iDIG-GT~ir~glv~~~~~~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~~ 91 (348) ..+|++|-| -|-++++++|..+..+.....+|......-......+..-....++.-|+||- |... . .- T Consensus 329 ~~vlg~dPg~r~g~k~a~vD~~G~vld~~~iyp~~~~~~~~~a~~~l~~li~~~~~~vIaIGn-gtas-----r----et 398 (785) T 3bzc_A 329 RATLGLDPGLRTGVKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALCAKHQVELIAIGN-GTAS-----R----ET 398 (785) T ss_dssp CCEEEEECCSSSCEEEEEECTTSCEEEEEEECCSGGGCCHHHHHHHHHHHHHHHTCCEEEEES-STTH-----H----HH T ss_pred CCEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC-CHHH-----H----HH T ss_conf 823554789877359999989998787679746897423599999999999982996899768-6387-----8----99 Q ss_pred CCCHHHHHHHHC--CCCEEEECHHHHHHHHHC Q ss_conf 669889999828--985588212654320000 Q gi|254780280|r 92 VIDPEELISRMQ--FEDVLLINDFEAQALAIC 121 (348) Q Consensus 92 ~~~~~~l~~~~~--~~~v~i~ND~~a~a~~~~ 121 (348) .-...++.+... ..++.+.|+.-|.-|+.. T Consensus 399 e~~v~~li~~~~~~~v~~~~V~E~gAsvYsaS 430 (785) T 3bzc_A 399 DKLAGELIKKYPGMKLTKIMVSEAGASVYSAS 430 (785) T ss_dssp HHHHHHHHHHCGGGCCEEEEECCHHHHHHHHS T ss_pred HHHHHHHHHHCCCCCCEEEEECCHHHHHHHCC T ss_conf 99999999856577864898332026776438 No 76 >2nrh_A Transcriptional activator, putative, BAF family; structural genomics, unknown function, putative transcription activator, PSI-2; 2.30A {Campylobacter jejuni} SCOP: c.55.1.13 c.55.1.13 Probab=64.21 E-value=2.2 Score=19.18 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=27.0 Q ss_pred HHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEECCCCHHHHHHHHHHCCC Q ss_conf 999997489973899656776556772764899998837983788973887999578722775999873800 Q gi|254780280|r 260 GDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITNPYIAIAGMVSYIKMTD 331 (348) Q Consensus 260 ~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~~~agl~GAa~~~r~~~ 331 (348) ..++.-+.++--|++.||-+..+.+.+.. + +.+++.-|.|-..++++.. T Consensus 159 ~~~I~~~~~~~~vilTGG~a~~l~~~l~~--------------------~---~~~~~Lvl~GL~~i~~~n~ 207 (219) T 2nrh_A 159 YLLIKDAAQNKKLYFTGGDGQFLANYFDH--------------------A---IYDKLLIFRGMKKIIKENP 207 (219) T ss_dssp HHHHHHHTTTSCEEEESTTHHHHHTTCSS--------------------E---EECTTHHHHHHHHHHHHCG T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHCCC--------------------C---EECCCHHHHHHHHHHHHCC T ss_conf 99999875599099989888999865799--------------------8---8972709999999999784 No 77 >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Probab=55.48 E-value=7.5 Score=15.85 Aligned_cols=108 Identities=13% Similarity=0.013 Sum_probs=54.2 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCC--EEEEEEEECCCCC-----------CC---HHHHHHHHHHHCCC Q ss_conf 98743458766773799985751189999877998--0889997438873-----------58---89999999972234 Q gi|254780280|r 1 MNNISKKDFPIAFPVLLADIGGTNVRFAILRSMES--EPEFCCTVQTSDY-----------EN---LEHAIQEVIYRKIS 64 (348) Q Consensus 1 ~~~~~~~~~~~~~~vL~iDIGGT~ir~glv~~~~~--~i~~~~~~~t~~~-----------~~---~~~~i~~~l~~~~~ 64 (348) ||...+ .|.++.+=+||||--.+|+-+++..++ ++....+.++.-. +. ..++|..|...... T Consensus 1 ~p~~~~--~~~~~~~AvIDiGSNSirl~I~~~~~~~~~~i~~~k~~vrLg~~l~~~g~l~~~~i~~~~~~L~~f~~~~~~ 78 (513) T 1u6z_A 1 MPIHDK--SPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQG 78 (513) T ss_dssp -------------CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTT T ss_pred CCCCCC--CCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999999--999887999997555089999995599720200037897432465546991999999999999999999986 Q ss_pred CCCCEE-EEEEEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCEEEECHHHHHHHH Q ss_conf 565546-9997304416855642135666698899998289855882126543200 Q gi|254780280|r 65 IRLRSA-FLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALA 119 (348) Q Consensus 65 ~~~~~i-gi~v~Gpv~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~i~ND~~a~a~~ 119 (348) ..+..+ +++... +.+ .. |-......+.+.++ .++.++..-+-+-|+ T Consensus 79 ~~v~~~~~vATsA-~R~-----A~--N~~~fl~~i~~~tG-~~i~visg~eEA~l~ 125 (513) T 1u6z_A 79 FSPASVCIVGTHT-LRQ-----AL--NATDFLKRAEKVIP-YPIEIISGNEEARLI 125 (513) T ss_dssp CCGGGEEEEECHH-HHH-----CT--THHHHHHHHTTTCS-SCEEECCHHHHHHHH T ss_pred CCCCEEEEEEEHH-HHC-----CC--CHHHHHHHHHHHHC-CCEEEECHHHHHHHH T ss_conf 7998899981699-883-----92--99999999999869-977996689999999 No 78 >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Probab=53.75 E-value=8 Score=15.68 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEEC-CCCHH Q ss_conf 57999999999999999999999748997389965677655677276489999883798378897388799957-87227 Q gi|254780280|r 242 PIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVITN-PYIAI 320 (348) Q Consensus 242 ~~A~~~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~~-~~agl 320 (348) ....+.++.+.+.+...+.+....+...+.|++.||-++-+.+++ .+.|.. + ...|....+ +.|-. T Consensus 246 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~I~l~GGga~li~~~l-----~~~~~~----~----~~~v~~~~~p~~A~~ 312 (320) T 2zgy_A 246 SIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAV-----KKHTQI----R----DERFFKTNNSQYDLV 312 (320) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEESTTHHHHHHHH-----HHTSCC----C----GGGEECCSCGGGHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEECCHHHHHHHHH-----HHHHCC----C----CCCEEECCCCHHHHH T ss_conf 999999999999999999985663412985999988888899999-----999589----9----987797899768999 Q ss_pred HHHHHHH Q ss_conf 7599987 Q gi|254780280|r 321 AGMVSYI 327 (348) Q Consensus 321 ~GAa~~~ 327 (348) +|++.+. T Consensus 313 ~G~~~~g 319 (320) T 2zgy_A 313 NGMYLIG 319 (320) T ss_dssp HHHHHHH T ss_pred HHHHHHC T ss_conf 9999855 No 79 >3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae} Probab=51.93 E-value=8.5 Score=15.50 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=34.1 Q ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEEEECC----CCCCCHHHHHHHHHHHCCC Q ss_conf 37999857511899998779980889997438----8735889999999972234 Q gi|254780280|r 14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQT----SDYENLEHAIQEVIYRKIS 64 (348) Q Consensus 14 ~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t----~~~~~~~~~i~~~l~~~~~ 64 (348) ..+++|-|-||.|.-+++. +.+..+++.+. -..++|+.++.+.+..... T Consensus 7 ~~IavDWGTtnlRa~l~~~--~~vl~~~~~~~Gi~~~~~~~f~~~l~~~~~~w~~ 59 (295) T 3nuw_A 7 RYIAIDWGSTNLRAWLYQG--EECLESRQSEAGVTRLNGRSPAAVLAEITQHWRD 59 (295) T ss_dssp EEEEEEECSSCEEEEEEET--TEEEEEEEESCCTTCCTTCCHHHHHHHHTTTTCC T ss_pred CEEEEEECCCCEEEEEECC--CCEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHC T ss_conf 7799920640035788749--9589986167375435864689999999876504 No 80 >1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 Probab=46.35 E-value=10 Score=14.96 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=23.4 Q ss_pred EEEEEECCCCEEEEEEECCCCE--EEEEEEECCCC Q ss_conf 7999857511899998779980--88999743887 Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESE--PEFCCTVQTSD 47 (348) Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~--i~~~~~~~t~~ 47 (348) ||+||-|=|++=+|+++..+.+ +.....+.|+. T Consensus 3 ILGiDPgl~~tG~avid~~~~~~~~i~~g~i~t~~ 37 (158) T 1hjr_A 3 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKV 37 (158) T ss_dssp EEEEECCSSEEEEEEEEEETTEEEEEEEEEEECCC T ss_pred EEEECCCCCCEEEEEEEEECCEEEEEEEEEEECCC T ss_conf 99984355856899999539878999866897799 No 81 >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Probab=42.60 E-value=12 Score=14.60 Aligned_cols=59 Identities=15% Similarity=0.298 Sum_probs=31.4 Q ss_pred CEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHH-HHCCEEEEECC---CCHHHHHHHHHHCCCCCCCCCC Q ss_conf 38996567765567727648999988379837889-73887999578---7227759998738001244457 Q gi|254780280|r 271 GVYISGGIPYKIIDLLRNSSFRESFENKSPHKELM-RQIPTYVITNP---YIAIAGMVSYIKMTDCFNLFIS 338 (348) Q Consensus 271 ~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l-~~ipv~~~~~~---~agl~GAa~~~r~~~~~~~~~~ 338 (348) -|+|.||.+.- +.|.+++... +..++ ....++++... .+.-+||+.++....-...|++ T Consensus 296 nIil~GG~s~~-------~G~~~RL~~e--L~~~~p~~~~~~v~~~~~~~~~~W~Ggsilasl~~f~~~~it 358 (375) T 2fxu_A 296 NNVMSGGTTMY-------PGIADRMQKE--ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIT 358 (375) T ss_dssp CEEEESGGGCS-------TTHHHHHHHH--HHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEE T ss_pred CEEEECCCCCC-------CCHHHHHHHH--HHHHCCCCCEEEEECCCCCCEEEEHHHHHHHCCCCHHHEEEE T ss_conf 55882551357-------0589999999--997689983489945998782586416674676458765677 No 82 >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Probab=35.66 E-value=15 Score=13.93 Aligned_cols=106 Identities=17% Similarity=0.056 Sum_probs=54.9 Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEECCCCE--EEEEEEECCCCCCC--------------HHHHHHHHHHHCCCCCC Q ss_conf 434587667737999857511899998779980--88999743887358--------------89999999972234565 Q gi|254780280|r 4 ISKKDFPIAFPVLLADIGGTNVRFAILRSMESE--PEFCCTVQTSDYEN--------------LEHAIQEVIYRKISIRL 67 (348) Q Consensus 4 ~~~~~~~~~~~vL~iDIGGT~ir~glv~~~~~~--i~~~~~~~t~~~~~--------------~~~~i~~~l~~~~~~~~ 67 (348) +|....| .|++=+||||--.+|+-+++..++. +....+.++.-.++ ..++|..|........+ T Consensus 4 ~~~~~~~-~mriAvIDIGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g~l~~~~i~~~~~~L~~f~~~~~~~~v 82 (315) T 1t6c_A 4 MSLDNKP-IMRVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKV 82 (315) T ss_dssp ------C-CEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTC T ss_pred CCCCCCC-CCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 7788897-458999997644089999982599730241115787521265315980999999999999999999875074 Q ss_pred CEE-EEEEEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCEEEECHHHHHHHH Q ss_conf 546-9997304416855642135666698899998289855882126543200 Q gi|254780280|r 68 RSA-FLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALA 119 (348) Q Consensus 68 ~~i-gi~v~Gpv~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~i~ND~~a~a~~ 119 (348) ..+ +++... +.+ . .+-......+.+.++. ++.++..-+-+-|. T Consensus 83 ~~i~~vATsA-~R~-----A--~N~~~~~~~i~~~~Gi-~i~IIsg~eEA~l~ 126 (315) T 1t6c_A 83 ERVKAVATEA-IRR-----A--KNAEEFLERVKREVGL-VVEVITPEQEGRYA 126 (315) T ss_dssp SEEEEEECHH-HHT-----S--TTHHHHHHHHHHHTCC-CEEECCHHHHHHHH T ss_pred CCEEEEEHHH-HHH-----C--CCHHHHHHHHHHHHCC-EEEEECHHHHHHHH T ss_conf 6199970299-884-----7--5665999999999698-58997489999987 No 83 >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* Probab=34.79 E-value=16 Score=13.85 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=16.2 Q ss_pred CCEEEEEECCCCEEEEEEEC Q ss_conf 73799985751189999877 Q gi|254780280|r 13 FPVLLADIGGTNVRFAILRS 32 (348) Q Consensus 13 ~~vL~iDIGGT~ir~glv~~ 32 (348) +|.+++|+|...+|+|+.-+ T Consensus 5 ~p~vViD~Gs~~~K~G~age 24 (418) T 1k8k_A 5 LPACVVDCGTGYTKLGYAGN 24 (418) T ss_dssp SCCEEEEECSSEEEEEETTC T ss_pred CCEEEEECCCCEEEEEECCC T ss_conf 98599999968799868899 No 84 >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 2p9k_B* Probab=30.58 E-value=8.6 Score=15.48 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=17.9 Q ss_pred CCCEEEEEECCCCEEEEEEECC Q ss_conf 7737999857511899998779 Q gi|254780280|r 12 AFPVLLADIGGTNVRFAILRSM 33 (348) Q Consensus 12 ~~~vL~iDIGGT~ir~glv~~~ 33 (348) ..++++||+|...+|+|+..++ T Consensus 5 ~~~~vViD~Gs~~~k~G~age~ 26 (394) T 1k8k_B 5 GRKVVVCDNGTGFVKCGYAGSN 26 (394) T ss_dssp ---------------------- T ss_pred CCCEEEEECCCCEEEEEECCCC T ss_conf 9988999899886998278899 No 85 >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Probab=28.27 E-value=20 Score=13.17 Aligned_cols=74 Identities=8% Similarity=-0.114 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCEEEEE-CCCCHH Q ss_conf 79999999999999999999997489-9738996567765567727648999988379837889738879995-787227 Q gi|254780280|r 243 IALKAINLFCEYLGRVAGDLALIFMA-RGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIPTYVIT-NPYIAI 320 (348) Q Consensus 243 ~A~~~~~~~~~~lg~~i~~l~~~~~p-~~~IvlgGGi~~~~~~~l~~~~f~~~f~~~~~~~~~l~~ipv~~~~-~~~agl 320 (348) .-.+.++.+.+.+-..+....-...+ -..|+|.||-+.-+.+++ .+.|..+.. +.... ...|.. T Consensus 270 ~i~~~~e~~~~~i~~~i~~~~~~~~~~i~~Iil~GGga~ll~~~l-----~e~~~~~~~---------~~~~~~p~~ana 335 (346) T 2fsj_A 270 VSGPILEDLANRIIENIRLNLRGEVDRVTSLIPVGGGSNLIGDRF-----EEIAPGTLV---------KIKPEDLQFANA 335 (346) T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGGEEEEEEESTTHHHHGGGG-----GGGSTTCBC---------CCCTTTTTTHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEECCHHHHHHHHH-----HHHCCCCCE---------ECCCCCCHHHHH T ss_conf 999999999999999999998637656598999897799999999-----997589813---------369998571599 Q ss_pred HHHHHHHHCC Q ss_conf 7599987380 Q gi|254780280|r 321 AGMVSYIKMT 330 (348) Q Consensus 321 ~GAa~~~r~~ 330 (348) .|...+++++ T Consensus 336 ~G~~~~a~~~ 345 (346) T 2fsj_A 336 LGYRDAAERS 345 (346) T ss_dssp HHHHHHHHTC T ss_pred HHHHHHHHHH T ss_conf 9999998622 No 86 >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoplasm, cytoskeleton, nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces pombe} Probab=22.42 E-value=26 Score=12.50 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=14.9 Q ss_pred EEEEECCCCEEEEEEEC Q ss_conf 99985751189999877 Q gi|254780280|r 16 LLADIGGTNVRFAILRS 32 (348) Q Consensus 16 L~iDIGGT~ir~glv~~ 32 (348) +++|+|..++|+|+.-+ T Consensus 8 iViD~Gs~~~R~G~agd 24 (427) T 3dwl_A 8 IIMDNGTGYSKLGYAGN 24 (427) T ss_dssp EEECCCSSBC-CEETTS T ss_pred EEEECCCCEEEEEECCC T ss_conf 99999988399878889 Done!