RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus
Liberibacter asiaticus str. psy62]
(348 letters)
>gnl|CDD|178964 PRK00292, glk, glucokinase; Provisional.
Length = 316
Score = 431 bits (1110), Expect = e-121
Identities = 124/321 (38%), Positives = 184/321 (57%), Gaps = 9/321 (2%)
Query: 13 FPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYRKISIRLRSAFL 72
P L+ DIGGTN RFA+ E E T T+DY +LE AI+ + + +++RSA
Sbjct: 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATADYPSLEDAIRAYLADEHGVQVRSACF 61
Query: 73 AIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVSIG 132
AIA P+ + +TN+HW + + + +LLINDF AQALAI L + V IG
Sbjct: 62 AIAGPVDGDE-VRMTNHHWAFSIAAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIG 120
Query: 133 QFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIFPHL 192
+ ++GPGTGLG++ ++ WI + EGGH+D P ++ + +I +L
Sbjct: 121 GGEPVP---GAPIAVIGPGTGLGVAGLVPVDGRWIVLPGEGGHVDFAPRSEEEAQILQYL 177
Query: 193 TERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKS---EDPIALKAIN 249
G +SAE +LSG GLVN+Y+A+C ADG E +L+ DI ++ P+ + ++
Sbjct: 178 -RAEFGHVSAERVLSGPGLVNLYRAICKADGREPE-LLTPADITERALAGSCPLCRRTLS 235
Query: 250 LFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQIP 309
LFC LGRVAG+LAL ARGGVYI+GGI + ++ + S FR +FE+K + IP
Sbjct: 236 LFCVILGRVAGNLALTLGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIP 295
Query: 310 TYVITNPYIAIAGMVSYIKMT 330
YVIT+P + G +Y++
Sbjct: 296 VYVITHPQPGLLGAGAYLRQA 316
>gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family
transcriptional regulator; Provisional.
Length = 638
Score = 206 bits (526), Expect = 6e-54
Identities = 112/320 (35%), Positives = 171/320 (53%), Gaps = 16/320 (5%)
Query: 14 PVLLADIGGTNVRFAILRSMESEPEFCCTVQT---SDYENLEHAIQEVIYRKISIRLRSA 70
P LLAD+GGTN RFA +E+ P ++ +DY L AI++ + R+ A
Sbjct: 19 PRLLADVGGTNARFA----LETGPGEITQIRVYPGADYPTLTDAIRKYLKDVKIGRVNHA 74
Query: 71 FLAIATPI-GDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYV 129
+AIA P+ GDQ +TN+ W E + F+ +L++NDF A A+A+ L+ + V
Sbjct: 75 AIAIANPVDGDQ--VRMTNHDWSFSIEATRRALGFDTLLVVNDFTALAMALPGLTDAQRV 132
Query: 130 SIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPSTQRDYEIF 189
+G S+ ++GPGTGLG+S +I A D WI + EGGH P +R+ ++
Sbjct: 133 QVGGGTRRQNSVIG---LLGPGTGLGVSGLIPADDRWIALGSEGGHASFAPQDERE-DLV 188
Query: 190 PHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSE--DPIALKA 247
+ +S E + +G G+ IY+AL D + + +IV ++ D +AL+A
Sbjct: 189 LQYARKKYPHVSFERVCAGPGMEIIYRALAARDKKRVAANVDTAEIVERAHAGDALALEA 248
Query: 248 INLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQ 307
+ FC LG AG+LAL A GG+YI GG+ K+ +L SSFR FE K + +
Sbjct: 249 VECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLAN 308
Query: 308 IPTYVITNPYIAIAGMVSYI 327
IPTY+IT Y A G+ + +
Sbjct: 309 IPTYLITAEYPAFLGVSAIL 328
>gnl|CDD|129832 TIGR00749, glk, glucokinase, proteobacterial type. This model
represents glucokinase of E. coli and close homologs,
mostly from other proteobacteria, presumed to have
equivalent function. This glucokinase is more closely
related to a number of uncharacterized paralogs than to
the glucokinase glcK (fromerly yqgR) of Bacillus
subtilis and its closest homologs, so the two sets are
represented by separate models.
Length = 316
Score = 203 bits (519), Expect = 4e-53
Identities = 112/323 (34%), Positives = 165/323 (51%), Gaps = 25/323 (7%)
Query: 16 LLADIGGTNVRFAILRSMESEPEFCCTVQTSDYENLEHAIQEVIYR---KISIRLRSAF- 71
L+ DIGGTN R A+ E T D+ +LE ++ +Y K+ ++ A
Sbjct: 1 LVGDIGGTNARLALCEIAPGEISQAKTYSGLDFPSLEAVVR--VYLEEHKVELKDPIAKG 58
Query: 72 -LAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAICSLSCSNYVS 130
AIA PI +TN+ W EL + F + +INDF A + AI L + +
Sbjct: 59 CFAIACPITGD-WVAMTNHTWAFSIAELKQNLGFSHLEIINDFTAVSYAIPGLKKEDLIQ 117
Query: 131 IGQF-VEDNRSLFSSRVIVGPGTGLGISSVIRAKD-SWIPISCEGGHMDIGPSTQRDYEI 188
G + + + I+G GTGLG++ +I D W+ + EGGH+D P+++ + I
Sbjct: 118 FGGAEPVEGKPI----AILGAGTGLGVAHLIHQVDGRWVVLPGEGGHVDFAPNSELEAII 173
Query: 189 FPHLTERAE-GRLSAENLLSGKGLVNIYKALCIADGFESNKVLSS-----KDIVSKS--- 239
+L RA+ G +SAE +LSG GLVNIY+AL AD L KDI ++
Sbjct: 174 LEYL--RAKIGHVSAERVLSGPGLVNIYEALVKADPERQFNKLPQENLKPKDISERALAG 231
Query: 240 EDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKS 299
+A++LFC GR AG+LAL RGGVYI+GGI + I+ + S FR +FE+K
Sbjct: 232 SCTDCRRALSLFCVIYGRFAGNLALNLGTRGGVYIAGGIVPRFIEFFKASGFRAAFEDKG 291
Query: 300 PHKELMRQIPTYVITNPYIAIAG 322
KE + IP YV+ + + G
Sbjct: 292 RMKEYVHDIPVYVVLHDNPGLLG 314
>gnl|CDD|183508 PRK12408, PRK12408, glucokinase; Provisional.
Length = 336
Score = 171 bits (434), Expect = 3e-43
Identities = 93/329 (28%), Positives = 165/329 (50%), Gaps = 19/329 (5%)
Query: 8 DFPIAFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSD---YENLEHA-IQEVI--YR 61
P + AD+GGT+VR A+ + + P+ V+ D Y ++ + ++ +
Sbjct: 11 AVPRPESFVAADVGGTHVRVAL---VCASPDAAKPVELLDYRTYRCADYPSLAAILADFL 67
Query: 62 KISIRLRSAFLAIATPIGDQKSFTLTNYHWVIDPEELISRMQFEDVLLINDFEAQALAIC 121
+R +A A D N W + PE++ +++ + V L+NDFEA A A
Sbjct: 68 AECAPVRRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLGLQAVHLVNDFEAVAYAAP 127
Query: 122 SLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSWIPISCEGGHMDIGPS 181
+ + + Q ++ +++GPGTGLG + I + + E G + +
Sbjct: 128 YMEGNQVL---QLSGPAQAAAGPALVLGPGTGLGAALWIPNGGRPVVLPTEAGQAALAAA 184
Query: 182 TQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVS---- 237
++ + ++ HL R + E++LSG GL+N+Y+ALC G + V +S ++
Sbjct: 185 SELEMQLLQHL-LRTRTHVPIEHVLSGPGLLNLYRALCALRG--ATPVHASPAAITAAAL 241
Query: 238 KSEDPIALKAINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFEN 297
+D +A +A+ +FC +LG V GD+AL + ARGGVY++GGI +I D L S F E F N
Sbjct: 242 AGDDALAHEALQVFCGFLGSVVGDMALAYGARGGVYLAGGILPQIADFLARSDFVERFLN 301
Query: 298 KSPHKELMRQIPTYVITNPYIAIAGMVSY 326
K P + + Q+P ++ + + + G S+
Sbjct: 302 KGPMRPALEQVPVKLVEHGQLGVLGAASW 330
>gnl|CDD|185540 PTZ00288, PTZ00288, glucokinase 1; Provisional.
Length = 405
Score = 50.7 bits (121), Expect = 5e-07
Identities = 72/348 (20%), Positives = 124/348 (35%), Gaps = 83/348 (23%)
Query: 19 DIGGTNVRFAILRSMESEPE------FCCTVQTSDY--------ENLEHAIQEVIYRKIS 64
D+GGTN R R ++ + V +D E L+ + +S
Sbjct: 32 DVGGTNARVGFAREVQHDDSGVHIIYVRFNVTKTDIRELLEFFDEVLQKLKKN-----LS 86
Query: 65 IRLRSAFLAIATP------------IGDQKSFTLTNYHWVIDPEELISRMQFEDVLLIND 112
R A AI+ P + LT+Y P EL + L+ND
Sbjct: 87 FIQRVAAGAISVPGPVTGGQLAGPFNNLKGIARLTDY-----PVELFPPGRSA---LLND 138
Query: 113 FEAQALAICSLSCSN--------------YVSIGQFVEDNRSLFSSR-VIVGPGTGLGIS 157
EA A + ++S + + ++ + + R +++ PGTGLG S
Sbjct: 139 LEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSS 198
Query: 158 SVIRA--KDSWIPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIY 215
+ D +I I E GH+ I D + L + ++ + S + IY
Sbjct: 199 LIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDS--TVYPIY 256
Query: 216 KALCIADGFESN---------------KVLSSKDIVSKSEDPIALKAINLFCEYLGRVAG 260
+ + G E N + + D A+KA+ +YL R+A
Sbjct: 257 EDIVSGRGLEFNYAYEKRGNKPSAPLKEAAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAA 316
Query: 261 DLALIFMARGGVYISGGIPYKIIDLLRNSSFRESFENKSPHKELMRQI 308
++++ F+ V + I + NS F F+N K+L +I
Sbjct: 317 EISMQFLPLTVVLMGDNI-------VYNSFF---FDNPENVKQLQARI 354
>gnl|CDD|184386 PRK13906, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 307
Score = 29.4 bits (66), Expect = 1.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 46 SDYENLEHAIQEVIYRKISIRLRSAFLAIATP 77
+DYENL H +Q+ + K I L I
Sbjct: 272 TDYENLIHYVQKTVKEKFGIELNREVRIIGEH 303
>gnl|CDD|162017 TIGR00744, ROK_glcA_fam, ROK family protein (putative glucokinase).
This alignment models one branch of the ROK superfamily
of proteins. The three members of the seed alignment for
this model all have experimental evidence for activity
as glucokinase, but the set of related proteins is
crowded with paralogs of different or unknown function.
Proteins scoring above the trusted_cutoff will show
strong similarity to at least one known glucokinase and
may be designated as putative glucokinases. However,
definitive identification of glucokinases should be done
only with extreme caution.
Length = 318
Score = 27.2 bits (60), Expect = 6.0
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 22/109 (20%)
Query: 203 ENLLSGKGLVNIYKALCIADGFESNKV-------LSSKDI--VSKSEDPIALKAINLFCE 253
E S GLV K + +S+K + ++ DP+A+ +
Sbjct: 178 ETYASATGLVRYAKRANAKPERAEVLLALGDGDGISAKHVFVAARQGDPVAVDSYREVAR 237
Query: 254 YLGRVAGDLALI-----FMARGGVYISGGIPYKIIDLLRNSSFRESFEN 297
+ G DLA + + GG+ +G DLL R+S++
Sbjct: 238 WAGAGLADLASLFNPSAIVLGGGLSDAG-------DLLL-DPIRKSYKR 278
>gnl|CDD|185617 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 26.9 bits (59), Expect = 7.6
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 190 PHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALKAIN 249
PH+ E + RL+ L K +N+ I GF+ ++L+ + + P AIN
Sbjct: 272 PHVWEFS--RLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTP---AAIN 326
Query: 250 LFCEYLG 256
FCE +G
Sbjct: 327 RFCELVG 333
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.409
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,732,672
Number of extensions: 368320
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 10
Length of query: 348
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 254
Effective length of database: 3,963,321
Effective search space: 1006683534
Effective search space used: 1006683534
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)