HHsearch alignment for GI: 254780281 and conserved domain: cd02948
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.83 E-value=0.00024 Score=47.11 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=58.1
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf 99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r 55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV 134 (201)
Q Consensus 55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l 134 (201)
T Consensus 16 ~~~lvvVdf~A~WC-GPCk~i~P~~~~l~~e~~~--~~~--~~~~~~~--d~~~~~~~~--------------------- 67 (102)
T cd02948 16 NKGLTVVDVYQEWC-GPCKAVVSLFKKIKNELGD--DLL--HFATAEA--DTIDTLKRY--------------------- 67 (102)
T ss_pred CCCCEEEEEECCCC-CCHHHHHHHHHHHHHHCCC--CEE--EEEEECC--CCHHHHHHH---------------------
T ss_conf 79949999989977-4578878999999987478--708--9999779--986799984---------------------
Q ss_pred HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 88609088622565567777525874206999858982999857898889999999999
Q gi|254780281|r 135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRL 193 (201)
Q Consensus 135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~i~~l 193 (201)
T Consensus 68 ----~i~s------------------~PT-f~~fknG~~v~~~~G-A~~~~L~~~I~~l 102 (102)
T cd02948 68 ----RGKC------------------EPT-FLFYKNGELVAVIRG-ANAPLLNKTITEL 102 (102)
T ss_pred ----CCEE------------------EEE-EEEEECCEEEEEEEC-CCHHHHHHHHHHC
T ss_conf ----9886------------------308-999999999999979-8989999999749