HHsearch alignment for GI: 254780281 and conserved domain: cd02949

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.04  E-value=4.3e-05  Score=51.57  Aligned_cols=85  Identities=19%  Similarity=0.253  Sum_probs=61.1

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf             99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r   55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV  134 (201)
Q Consensus        55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l  134 (201)
T Consensus        12 s~k~VlV~F~A~wCg-pCk~l~P~l~~la~ey~---~~v~f~kvDvd---~~~-------------------------~l   59 (97)
T cd02949          12 SDRLILVLYTSPTCG-PCRTLKPILNKVIDEFD---GAVHFVEIDID---EDQ-------------------------EI   59 (97)
T ss_pred             CCCEEEEEEECCCCC-CHHHHHHHHHHHHHHCC---CCEEEEEEECC---CCH-------------------------HH
T ss_conf             799499999899985-65642699999999837---97199999688---798-------------------------89


Q ss_pred             HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             88609088622565567777525874206999858982999857898889999999
Q gi|254780281|r  135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKI  190 (201)
Q Consensus       135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~i  190 (201)
T Consensus        60 a~~~~I~~------------------~PT~~~f-k~g~~v~~~~G~~~~~~l~~~i   96 (97)
T cd02949          60 AEAAGIMG------------------TPTVQFF-KDKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             HHHCCCCC------------------CCEEEEE-ECCEEEEEEECCCCHHHHHHHH
T ss_conf             99819931------------------7789999-9999968888888899999975