HHsearch alignment for GI: 254780281 and conserved domain: cd02950
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.97 E-value=6.7e-09 Score=74.56 Aligned_cols=96 Identities=17% Similarity=0.269 Sum_probs=76.7
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf 99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r 55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV 134 (201)
Q Consensus 55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l 134 (201)
T Consensus 19 ngKPvlVdFyA~WC~-~Ck~maP~le~l~~~Y~---dkv~fv~vNVDn~~----------------w----------~~~ 68 (142)
T cd02950 19 NGKPTLVEFYADWCT-VCQEMAPDVAKLKQKYG---DQVNFVMLNVDNPK----------------W----------LPE 68 (142)
T ss_pred CCCCEEEEEECCCCH-HHHHHHHHHHHHHHHHC---CCCEEEEEECCCCC----------------C----------HHH
T ss_conf 799789999899897-78877389999999958---92149999788870----------------5----------679
Q ss_pred HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8860908862256556777752587420699985898299985789888999999999985143
Q gi|254780281|r 135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRLITYGN 198 (201)
Q Consensus 135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~i~~ll~~~~ 198 (201)
T Consensus 69 ~~~y~V~------------------giPt~~~fd~~G~~~~~~iG~~pe~~l~~~l~aL~~~~~ 114 (142)
T cd02950 69 IDRYRVD------------------GIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred HHHHCCC------------------CCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 9981978------------------887699986899691035376988999999999982897