HHsearch alignment for GI: 254780281 and conserved domain: cd02953
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.18 E-value=7.5e-06 Score=56.17 Aligned_cols=92 Identities=16% Similarity=0.295 Sum_probs=60.5
Q ss_pred HCCCEEEEEEECCCCCCCCHHHHHHH---HHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHH
Q ss_conf 49967999960477765446888877---655543024433305887651433333057777753136864224589889
Q gi|254780281|r 54 LYIKPSIVFFGFTNCSAVCPTTLSRL---DRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPID 130 (201)
Q Consensus 54 ~~Gk~~li~F~~T~Cpd~Cp~~l~~l---~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~ 130 (201)
T Consensus 9 ~~gKpVlvdf~A~WC~-~Ck~m~~~~~~~~~v~~~~~~-----~~v~vkvD~t~~~~----------------------~ 60 (104)
T cd02953 9 AQGKPVFVDFTADWCV-TCKVNEKVVFSDPEVQAALKK-----DVVLLRADWTKNDP----------------------E 60 (104)
T ss_pred HCCCCEEEEEECCCCH-HHHHHHHHCCCCHHHHHHHHC-----CCCEEECCCCCCCH----------------------H
T ss_conf 8299199999867588-888511420488999999724-----77357636778998----------------------9
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEE-EEECCCCCHHHHHHHHH
Q ss_conf 89888860908862256556777752587420699985898299-98578988899999999
Q gi|254780281|r 131 VMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIV-GVIPYKDDSDSAIEKIN 191 (201)
Q Consensus 131 i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~-~~~~~~~~~~~i~~~i~ 191 (201)
T Consensus 61 ~~~l~~~~~v~g------------------~Pt~~f~~~~g~~~~~~l~G~~~~~~fl~~Le 104 (104)
T cd02953 61 ITALLKRFGVFG------------------PPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHHHHCCCCC------------------CCEEEEECCCCCCCCCEEECCCCHHHHHHHHC
T ss_conf 999999839955------------------67799987999867626123048999999759