HHsearch alignment for GI: 254780281 and conserved domain: cd02961
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.77 E-value=0.017 Score=35.91 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=57.1
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf 99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r 55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV 134 (201)
Q Consensus 55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l 134 (201)
T Consensus 14 ~~~~~lV~Fya~wC~-~C~~~~p~~~~~a~~~~~-~~~~~~~~vd~~--~~-~-------------------------~~ 63 (101)
T cd02961 14 DSKDVLVEFYAPWCG-HCKALAPEYEKLAKELKG-DGKVVVAKVDCT--AN-N-------------------------DL 63 (101)
T ss_pred CCCCEEEEEECCCCC-CCHHHCHHHHHHHHHHCC-CCCEEEEEEECC--CC-H-------------------------HH
T ss_conf 399899999889980-403326778999998514-897899999875--53-4-------------------------22
Q ss_pred HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHH
Q ss_conf 886090886225655677775258742069998589829998578988899999
Q gi|254780281|r 135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIE 188 (201)
Q Consensus 135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~ 188 (201)
T Consensus 64 ~~~~~i------------------~~~Pti~~f~~~~~~~~~y~G~~~~~~l~~ 99 (101)
T cd02961 64 CSEYGV------------------RGYPTIKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred CCCCCE------------------EEECEEEEEECCCEEEEEECCCCCHHHHHH
T ss_conf 226773------------------682879999899543557469899999996