HHsearch alignment for GI: 254780281 and conserved domain: cd02963

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.82  E-value=0.00014  Score=48.54  Aligned_cols=89  Identities=11%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCHHHHHHH
Q ss_conf             99679999604777654468888776555430244333058876514333330577777531368642245898898988
Q gi|254780281|r   55 YIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISGDPIDVMRV  134 (201)
Q Consensus        55 ~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg~~~~i~~l  134 (201)
T Consensus        23 ~~kPvlV~F~A~WC~-pC~~l~P~~~~~a~ele~--~~v~~~~Vn~d--~~-~-------------------------~l   71 (111)
T cd02963          23 FKKPYLIKITSDWCF-SCIHIEPVWKEVIQELEP--LGVGIATVNAG--HE-R-------------------------RL   71 (111)
T ss_pred             CCCCEEEEEECCCCH-HHHHHHHHHHHHHHHHCC--CCEEEEEEECC--CC-H-------------------------HH
T ss_conf             897399999997478-788650799999998345--75599999488--69-8-------------------------99


Q ss_pred             HHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf             88609088622565567777525874206999858982999857898889999999999
Q gi|254780281|r  135 AKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPYKDDSDSAIEKINRL  193 (201)
Q Consensus       135 ~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~~~~~~~i~~~i~~l  193 (201)
T Consensus        72 a~~~gV~------------------siPtl~~~-~~G~~v~~~~G~~s~~~i~~Fi~kl  111 (111)
T cd02963          72 ARKLGAH------------------SVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             HHHCCCC------------------CCCEEEEE-ECCEEEEEECCCCCHHHHHHHHHHC
T ss_conf             9981998------------------68989999-9999988663767989999999739