HHsearch alignment for GI: 254780281 and conserved domain: cd02968
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=100.00 E-value=6.2e-42 Score=273.89 Aligned_cols=141 Identities=40% Similarity=0.740 Sum_probs=131.4
Q ss_pred CCCCEEEECCCCCEECHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCCCHHHHHHH
Q ss_conf 67870798299979677884996799996047776544688887765554302443-33058876514333330577777
Q gi|254780281|r 35 FNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTG-TLLNAYFITVDPKRDTPEVMKKF 113 (201)
Q Consensus 35 ~~~~f~L~d~~G~~~~~~~~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~-~~v~~v~IsvDP~rDt~e~l~~y 113 (201)
T Consensus 1 ~~p~f~L~d~~G~~~~~~~~~gk~~lv~F~yt~Cp~~Cp~~~~~l~~~~~~l~~~~~~~v~~v~ISvDP~rDtpe~L~~y 80 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCCCEEEECCCCCEEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHH
T ss_conf 97986999199899827997998899998746799934899999999999864432585799999908888999999999
Q ss_pred HHHCCCCEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECC
Q ss_conf 531368642245898898988886090886225655677775258742069998589829998578
Q gi|254780281|r 114 VQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPY 179 (201)
Q Consensus 114 ~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~ 179 (201)
T Consensus 81 ~~~~~~~w~~Ltg~~~~i~~l~~~~gv~~~~~~~~----~~~~~~~Hs~~~~lid~~G~i~~~~~g 142 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPED----DGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHCCCCEEEECCHHHHHHHHHHCCEEEEECCCC----CCCCEEECCCEEEEECCCCCEEEEECC
T ss_conf 99736584699899999999999769589976788----888788730389999799859999479