HHsearch alignment for GI: 254780281 and conserved domain: cd02968

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=100.00  E-value=6.2e-42  Score=273.89  Aligned_cols=141  Identities=40%  Similarity=0.740  Sum_probs=131.4

Q ss_pred             CCCCEEEECCCCCEECHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCCCHHHHHHH
Q ss_conf             67870798299979677884996799996047776544688887765554302443-33058876514333330577777
Q gi|254780281|r   35 FNSDVHLVAQDGTDFSLSSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDPTG-TLLNAYFITVDPKRDTPEVMKKF  113 (201)
Q Consensus        35 ~~~~f~L~d~~G~~~~~~~~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~~~-~~v~~v~IsvDP~rDt~e~l~~y  113 (201)
T Consensus         1 ~~p~f~L~d~~G~~~~~~~~~gk~~lv~F~yt~Cp~~Cp~~~~~l~~~~~~l~~~~~~~v~~v~ISvDP~rDtpe~L~~y   80 (142)
T cd02968           1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY   80 (142)
T ss_pred             CCCCEEEECCCCCEEEHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHH
T ss_conf             97986999199899827997998899998746799934899999999999864432585799999908888999999999


Q ss_pred             HHHCCCCEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECC
Q ss_conf             531368642245898898988886090886225655677775258742069998589829998578
Q gi|254780281|r  114 VQRFSDRIIGISGDPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGVIPY  179 (201)
Q Consensus       114 ~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~~~~  179 (201)
T Consensus        81 ~~~~~~~w~~Ltg~~~~i~~l~~~~gv~~~~~~~~----~~~~~~~Hs~~~~lid~~G~i~~~~~g  142 (142)
T cd02968          81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPED----DGDYLVDHSAAIYLVDPDGKLVRYYGG  142 (142)
T ss_pred             HHHHCCCCEEEECCHHHHHHHHHHCCEEEEECCCC----CCCCEEECCCEEEEECCCCCEEEEECC
T ss_conf             99736584699899999999999769589976788----888788730389999799859999479