HHsearch alignment for GI: 254780281 and conserved domain: cd03008
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.37 E-value=9.6e-12 Score=91.72 Aligned_cols=103 Identities=11% Similarity=0.279 Sum_probs=87.0
Q ss_pred HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCC-----CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEECCCC
Q ss_conf 8849967999960477765446888877655543024-----43330588765143333305777775313686422458
Q gi|254780281|r 52 SSLYIKPSIVFFGFTNCSAVCPTTLSRLDRLLKQVDP-----TGTLLNAYFITVDPKRDTPEVMKKFVQRFSDRIIGISG 126 (201)
Q Consensus 52 ~~~~Gk~~li~F~~T~Cpd~Cp~~l~~l~~~~~~l~~-----~~~~v~~v~IsvDP~rDt~e~l~~y~~~~~~~~~~ltg 126 (201)
T Consensus 21 s~L~GKvVgLYFSA~WCp-PCr~FTP~L~~fY~~l~~~~~~~~~~~fEIVfVS~D---rse~~f~~y~~~MP~~WlAlPf 96 (146)
T cd03008 21 ARLENRVLLLFFGAVVSP-QCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD---QSEQQQESFLKDMPKKWLFLPF 96 (146)
T ss_pred HHCCCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC---CCHHHHHHHHHHCCCCEEECCC
T ss_conf 981899999997478681-487677899999999987654403787799998368---9999999999977987266576
Q ss_pred CHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 98898988886090886225655677775258742069998589829998
Q gi|254780281|r 127 DPIDVMRVAKNFRIYVNNVLAEKSGVEEKYFVDHTTALLLFDTAGSIVGV 176 (201)
Q Consensus 127 ~~~~i~~l~~~~~v~~~~~~~~~~~~~~~y~i~H~~~~~lid~~G~i~~~ 176 (201)
T Consensus 97 ~d~~~~~L~~~f~V~------------------gIPtLVil~~dG~vit~ 128 (146)
T cd03008 97 EDEFRRELEAQFSVE------------------ELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCHHHHHHHHHCCCC------------------CCCEEEEECCCCCEECH
T ss_conf 968999999985998------------------78889999899989737